4s05_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF KLEBSIELLA PNEUMONIAE PMRA IN COMPLEX WITH PMRA BOX DNA
reference	Hsiao et al. 'Nat 6 8838 2015
source	Klebsiella pneumoniae
experiment	X-ray (resolution=3.80, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4s05_A interface=187,188,191,192,193,195,210, mkilvieddalllqglilamqsegyvcdgvstaheaalslasnhyslivldlglpdedglhflsrmrrekmtqpvliltardtledrisgldtgaddylvkpfaleelnarirallrrhnnqgdneisvgnlrlnvtrrlvwlgetaldltpkeyallsrlmmkagspvhreilyndiysgdnepaTNtlEVHiHnlrekigksrirtvRgfgymlann > 4s05_B interface=187,188,189,191,192,195, mkilvieddalllqglilamqsegyvcdgvstaheaalslasnhyslivldlglpdedglhflsrmrrekmtqpvliltardtledrisgldtgaddylvkpfaleelnarirallrrhnnqgdneisvgnlrlnvtrrlvwlgetaldltpkeyallsrlmmkagspvhreilyndiysgdnepaTNTlEVhiHnlrekigksrirtvrgfgymlann
interface signature	TNEVHHR/TNTEVH

Estimated binding specificities ?

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# IC=10.688 IC/col=0.668 n_of_columns=16

specificity:

A |   2  11   0  96   4  24  24  24  64  24  24  88   0   0  64  94
C |  88   8   0   0   2  24  24  24  14  24  24   2   0   0   8   0
G |   4  13   0   0  88  24  24  24   8  24  24   2   0   0  14   0
T |   2  64  96   0   2  24  24  24  10  24  24   4  96  96  10   2

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updated Wed Jul 30 02:52:02 2025