7q94_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF AGROBACTERIUM TUMEFACIENS NADQ, DNA COMPLEX.
reference	Gasparrini et al. J.Struct.Biol. 214 107917 2022
source	Agrobacterium fabrum (strain C58 / ATCC 33970) / Agrobacterium fabrum (strain C58 / ATCC 33970) / Agrobacterium fabrum (strain C58 / ATCC 33970) / Agrobacterium fabrum (strain C58 / ATCC 33970)
experiment	X-ray (resolution=4.30, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;Nudix;
reference complex	7q94_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7q94_A interface=225,226,227,228,231,252, eliavvtaittdeprvmtvregaalpsgpfefghrtlqsglrewiheqthhpvgyleqlytfadrdrnngrtisigylglvrefwhgwyeyfpwedhrqgrpdildsiidklrawadsepdsraqrhlradftfgldgggwneeltlqryellyeaglvgeaqseprinfgrpmfadhrrilatgiarlrakikyrpvvfelmadsftllqlqraiealagltlHKQNfrRlieqqqlveetgdmatetggRpaklfrfrqtvlder > 7q94_B interface=222,223,224,225,227,228,249, aeliavvtaittdeprvmtvregaalpsgpfefghrtlqsglrewiheqthhpvgyleqlytfadrrtisigylglvreqfwhgwyeyfpwedhrqgrpdildsiidklrawadsepdsraqrhlradftfgldgggwneeltlqryellyeaglvgeaqseprinfgrpmfadhrrilatgiarlrakikyrpvvfelmadsftllqlqraiealagltlHKQNfRRlieqqqlveetgdmatetggRpaklfrfrqtvlder
interface signature	HKQNRR/HKQNRRR

Estimated binding specificities ?

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# IC=19.331 IC/col=0.879 n_of_columns=22

specificity:

A |   0  96  12  24   0   0   0  96  24  24  24  24   6  96   0  96  96   0  64   0   0   6
C |   0   0  15  24  96   0  96   0  24  24  24  24   6   0   0   0   0   0  12   0   0   6
G |   0   0  12  24   0   0   0   0  24  24  24  24  78   0  96   0   0   0   8   0  96   6
T |  96   0  57  24   0  96   0   0  24  24  24  24   6   0   0   0   0  96  12  96   0  78

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updated Sun Dec 15 13:25:55 2024