8xvb_ABCDEFGH : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF ATP-DNA-MUB FILAMENTS
experiment	NMR
structural superfamily	C-terminal domain of B transposition protein;P-loop containing nucleoside triphosphate hydrolases;
reference complex	8xvb_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8xvb_A interface=85, lpepprfvetqtvkqiwtsmrfasltesiavvcgnpgvgkteaareyrrtnnnvwmititpscasvlecltelafelgmndaprRkgplsralrrrlegtqglviideadhlgaevleelrllqestriglvlmgnhrvysnmtggnrtvefarlfsriakrtainktkkadvkaiadawqingekelellqqiaqkpgalrilnhslrlaamtahgkgervnedylrqafreldldvdistllrn > 8xvb_B interface=85, lpepprfvetqtvkqiwtsmrfasltesiavvcgnpgvgkteaareyrrtnnnvwmititpscasvlecltelafelgmndaprRkgplsralrrrlegtqglviideadhlgaevleelrllqestriglvlmgnhrvysnmtggnrtvefarlfsriakrtainktkkadvkaiadawqingekelellqqiaqkpgalrilnhslrlaamtahgkgervnedylrqafreldldvdistllrn > 8xvb_C interface=85, lpepprfvetqtvkqiwtsmrfasltesiavvcgnpgvgkteaareyrrtnnnvwmititpscasvlecltelafelgmndaprRkgplsralrrrlegtqglviideadhlgaevleelrllqestriglvlmgnhrvysnmtggnrtvefarlfsriakrtainktkkadvkaiadawqingekelellqqiaqkpgalrilnhslrlaamtahgkgervnedylrqafreldldvdistllrn > 8xvb_D interface=85, lpepprfvetqtvkqiwtsmrfasltesiavvcgnpgvgkteaareyrrtnnnvwmititpscasvlecltelafelgmndaprRkgplsralrrrlegtqglviideadhlgaevleelrllqestriglvlmgnhrvysnmtggnrtvefarlfsriakrtainktkkadvkaiadawqingekelellqqiaqkpgalrilnhslrlaamtahgkgervnedylrqafreldldvdistllrn > 8xvb_E interface=85, lpepprfvetqtvkqiwtsmrfasltesiavvcgnpgvgkteaareyrrtnnnvwmititpscasvlecltelafelgmndaprRkgplsralrrrlegtqglviideadhlgaevleelrllqestriglvlmgnhrvysnmtggnrtvefarlfsriakrtainktkkadvkaiadawqingekelellqqiaqkpgalrilnhslrlaamtahgkgervnedylrqafreldldvdistllrn > 8xvb_F interface=85, lpepprfvetqtvkqiwtsmrfasltesiavvcgnpgvgkteaareyrrtnnnvwmititpscasvlecltelafelgmndaprRkgplsralrrrlegtqglviideadhlgaevleelrllqestriglvlmgnhrvysnmtggnrtvefarlfsriakrtainktkkadvkaiadawqingekelellqqiaqkpgalrilnhslrlaamtahgkgervnedylrqafreldldvdistllrn > 8xvb_G interface=85, lpepprfvetqtvkqiwtsmrfasltesiavvcgnpgvgkteaareyrrtnnnvwmititpscasvlecltelafelgmndaprRkgplsralrrrlegtqglviideadhlgaevleelrllqestriglvlmgnhrvysnmtggnrtvefarlfsriakrtainktkkadvkaiadawqingekelellqqiaqkpgalrilnhslrlaamtahgkgervnedylrqafreldldvdistllrn > 8xvb_H interface=85, lpepprfvetqtvkqiwtsmrfasltesiavvcgnpgvgkteaareyrrtnnnvwmititpscasvlecltelafelgmndaprRkgplsralrrrlegtqglviideadhlgaevleelrllqestriglvlmgnhrvysnmtggnrtvefarlfsriakrtainktkkadvkaiadawqingekelellqqiaqkpgalrilnhslrlaamtahgkgervnedylrqafreldldvdistllrn
interface signature	R/R/R/R/R/R/R/R

Estimated binding specificities ?

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# IC=13.375 IC/col=1.029 n_of_columns=13

specificity:

A |  86  86  96  96  86  86  77  96  86  96  69  87  96
C |   3   3   0   0   3   4   4   0   4   0   9   3   0
G |   4   3   0   0   3   3   3   0   3   0  12   3   0
T |   3   4   0   0   4   3  12   0   3   0   6   3   0

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updated Mon Dec 16 16:45:56 2024