,Espinosa Angarica,V. et al.(2008) Prediction of TF target sites based on atomistic models of protein-DNA complexes. BMC Bioinformatics, 9:436. ,Fri Dec 13 01:49:46 2024 entries=634 ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- , AMINOACIDS THYMINE CYTOSINE ADENINE GUANINE AMINOACIDS ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- , N1 O2 N3 O4 N1 O2 N3 N4 N9 N7 N6 N1 N3 N9 N7 O6 N1 N2 N3 ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- , , ARG R ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ARG R NE -7.126 1.978 -7.126 1.536 -7.126 2.224 -7.126 -7.126 -7.126 -0.335 -7.126 -7.126 1.610 -7.126 3.451 3.029 -7.126 -7.126 1.084 NE NH1 -7.126 3.416 -7.126 2.430 -7.126 2.880 1.194 -7.126 -7.126 2.062 -7.126 -7.126 2.842 -7.126 4.772 4.797 -7.126 -7.126 2.287 NH1 NH2 -7.126 3.399 -7.126 2.835 -7.126 2.803 1.983 -7.126 -7.126 1.050 -7.126 -7.126 2.708 -7.126 5.022 5.172 -7.126 -7.126 2.818 NH2 , LYS K ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- LYS K NZ -6.205 2.901 -6.205 2.761 -6.205 2.314 0.418 -6.205 -6.205 2.342 -6.205 -6.205 2.036 -6.205 4.207 4.514 -6.205 -6.205 1.328 NZ , SER S ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SER S OG -5.517 2.877 1.542 2.705 -5.517 1.970 1.788 3.011 -5.517 3.435 2.655 -5.517 2.455 -5.517 3.523 3.063 -5.517 2.776 1.965 OG , THR T ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- THR T OG1 -4.970 2.052 2.052 3.063 -4.970 1.605 0.914 2.991 -4.970 2.600 1.684 -4.970 1.684 -4.970 2.698 3.257 -4.970 3.257 1.313 OG1 , ASN N ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ASN N OD1 -6.004 -6.004 2.973 -6.004 -6.004 -6.004 -6.004 3.299 -6.004 -6.004 4.619 -6.004 -6.004 -6.004 -6.004 -6.004 -6.004 3.773 -6.004 OD1 ND2 -6.004 3.820 -6.004 4.099 -6.004 3.624 -6.004 -6.004 -6.004 4.450 -6.004 -6.004 2.892 -6.004 3.532 4.392 -6.004 -6.004 3.773 ND2 , GLN Q ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GLN Q OE1 -5.652 -5.652 2.637 -5.652 -5.652 -5.652 -5.652 3.489 -5.652 -5.652 4.604 -5.652 -5.652 -5.652 -5.652 -5.652 -5.652 4.264 -5.652 OE1 NE2 -5.652 3.330 -5.652 4.212 -5.652 3.037 1.092 -5.652 -5.652 4.726 -5.652 -5.652 3.116 -5.652 3.283 4.627 -5.652 -5.652 3.976 NE2 , HIS H ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HIS H ND1 -4.745 -4.745 -4.745 3.658 -4.745 2.518 2.518 2.518 -4.745 -4.745 3.290 -4.745 -4.745 -4.745 4.998 4.864 -4.745 -4.745 2.918 ND1 NE2 -4.745 4.064 -4.745 4.469 -4.745 3.904 -4.745 2.518 -4.745 3.290 -4.745 -4.745 3.290 -4.745 5.115 6.214 -4.745 2.918 2.918 NE2 , TYR Y ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TYR Y OH -4.920 2.696 1.088 2.696 -4.920 2.431 2.026 3.529 -4.920 3.203 3.357 -4.920 3.357 -4.920 3.342 2.426 -4.920 3.811 3.118 OH , GLU E ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GLU E OE1 -5.328 -5.328 1.741 -5.328 -5.328 -5.328 -5.328 4.498 -5.328 -5.328 2.353 -5.328 -5.328 -5.328 -5.328 -5.328 -5.328 3.590 -5.328 OE1 OE2 -5.328 -5.328 2.028 -5.328 -5.328 -5.328 -5.328 4.289 -5.328 -5.328 2.576 -5.328 -5.328 -5.328 -5.328 -5.328 -5.328 3.234 -5.328 OE2 , ASP D ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ASP D OD1 -5.215 -5.215 1.039 -5.215 -5.215 -5.215 -5.215 4.116 -5.215 -5.215 2.972 -5.215 -5.215 -5.215 -5.215 -5.215 -5.215 4.168 -5.215 OD1 OD2 -5.215 -5.215 2.983 -5.215 -5.215 -5.215 -5.215 4.809 -5.215 -5.215 2.972 -5.215 -5.215 -5.215 -5.215 -5.215 -5.215 4.391 -5.215 OD2 , CYS C ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CYS C SG -2.773 -2.773 -2.773 5.486 -2.773 4.346 -2.773 -2.773 -2.773 4.425 4.425 -2.773 4.425 - - - - - - SG , MET M ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MET M SD -2.773 -2.773 3.763 -2.773 - - - - -2.773 -2.773 4.781 -2.773 -2.773 - - - - - - SD , TRP W ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TRP W NE1 -3.367 4.681 -3.367 3.583 -3.367 5.214 -3.367 -3.367 - - - - - - - - - - - NE1