,Espinosa Angarica,V. et al.(2008) Prediction of TF target sites based on atomistic models of protein-DNA complexes. BMC Bioinformatics, 9:436. ,Fri Jul 18 16:21:05 2025 entries=635 ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- , AMINOACIDS THYMINE CYTOSINE ADENINE GUANINE AMINOACIDS ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- , N1 O2 N3 O4 N1 O2 N3 N4 N9 N7 N6 N1 N3 N9 N7 O6 N1 N2 N3 ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- , , ARG R ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ARG R NE -7.133 1.976 -7.133 1.534 -7.133 2.216 -7.133 -7.133 -7.133 -0.339 -7.133 -7.133 1.606 -7.133 3.442 3.021 -7.133 -7.133 1.075 NE NH1 -7.133 3.414 -7.133 2.428 -7.133 2.909 1.186 -7.133 -7.133 2.058 -7.133 -7.133 2.838 -7.133 4.764 4.780 -7.133 -7.133 2.279 NH1 NH2 -7.133 3.397 -7.133 2.833 -7.133 2.835 1.974 -7.133 -7.133 1.269 -7.133 -7.133 2.704 -7.133 5.020 5.164 -7.133 -7.133 2.810 NH2 , LYS K ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- LYS K NZ -6.203 2.902 -6.203 2.762 -6.203 2.308 0.412 -6.203 -6.203 2.340 -6.203 -6.203 2.035 -6.203 4.212 4.500 -6.203 -6.203 1.322 NZ , SER S ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SER S OG -5.525 2.869 1.535 2.698 -5.525 1.957 1.774 2.998 -5.525 3.426 2.646 -5.525 2.445 -5.525 3.509 3.049 -5.525 2.762 1.951 OG , THR T ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- THR T OG1 -4.970 2.056 2.056 3.067 -4.970 1.603 0.911 3.106 -4.970 2.602 1.686 -4.970 1.686 -4.970 2.696 3.255 -4.970 3.255 1.311 OG1 , ASN N ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ASN N OD1 -6.004 -6.004 2.973 -6.004 -6.004 -6.004 -6.004 3.366 -6.004 -6.004 4.617 -6.004 -6.004 -6.004 -6.004 -6.004 -6.004 3.766 -6.004 OD1 ND2 -6.004 3.820 -6.004 4.125 -6.004 3.618 -6.004 -6.004 -6.004 4.448 -6.004 -6.004 2.890 -6.004 3.525 4.385 -6.004 -6.004 3.766 ND2 , GLN Q ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GLN Q OE1 -5.652 -5.652 2.642 -5.652 -5.652 -5.652 -5.652 3.487 -5.652 -5.652 4.607 -5.652 -5.652 -5.652 -5.652 -5.652 -5.652 4.262 -5.652 OE1 NE2 -5.652 3.335 -5.652 4.217 -5.652 3.035 1.091 -5.652 -5.652 4.728 -5.652 -5.652 3.119 -5.652 3.281 4.625 -5.652 -5.652 3.974 NE2 , HIS H ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HIS H ND1 -4.736 -4.736 -4.736 3.669 -4.736 2.523 2.523 2.523 -4.736 -4.736 3.299 -4.736 -4.736 -4.736 5.002 4.868 -4.736 -4.736 2.923 ND1 NE2 -4.736 4.075 -4.736 4.480 -4.736 3.909 -4.736 2.523 -4.736 3.299 -4.736 -4.736 3.299 -4.736 5.120 6.218 -4.736 2.923 2.923 NE2 , TYR Y ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TYR Y OH -4.927 2.692 1.084 2.692 -4.927 2.421 2.016 3.519 -4.927 3.197 3.351 -4.927 3.351 -4.927 3.331 2.415 -4.927 3.801 3.108 OH , GLU E ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GLU E OE1 -5.318 -5.318 1.753 -5.318 -5.318 -5.318 -5.318 4.477 -5.318 -5.318 2.364 -5.318 -5.318 -5.318 -5.318 -5.318 -5.318 3.596 -5.318 OE1 OE2 -5.318 -5.318 2.041 -5.318 -5.318 -5.318 -5.318 4.226 -5.318 -5.318 2.587 -5.318 -5.318 -5.318 -5.318 -5.318 -5.318 3.240 -5.318 OE2 , ASP D ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ASP D OD1 -5.231 -5.231 1.026 -5.231 -5.231 -5.231 -5.231 4.097 -5.231 -5.231 2.957 -5.231 -5.231 -5.231 -5.231 -5.231 -5.231 4.149 -5.231 OD1 OD2 -5.231 -5.231 2.970 -5.231 -5.231 -5.231 -5.231 4.790 -5.231 -5.231 2.957 -5.231 -5.231 -5.231 -5.231 -5.231 -5.231 4.372 -5.231 OD2 , CYS C ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CYS C SG -2.773 -2.773 -2.773 5.488 -2.773 4.342 -2.773 -2.773 -2.773 4.425 4.425 -2.773 4.425 - - - - - - SG , MET M ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MET M SD -2.773 -2.773 3.768 -2.773 - - - - -2.773 -2.773 4.783 -2.773 -2.773 - - - - - - SD , TRP W ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TRP W NE1 -3.367 4.687 -3.367 3.589 -3.367 5.214 -3.367 -3.367 - - - - - - - - - - - NE1