,Espinosa Angarica,V. et al.(2008) Prediction of TF target sites based on atomistic models of protein-DNA complexes. BMC Bioinformatics, 9:436. ,Sun Jan 4 10:13:56 2026 entries=588 ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- , AMINOACIDS THYMINE CYTOSINE ADENINE GUANINE AMINOACIDS ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- , N1 O2 N3 O4 N1 O2 N3 N4 N9 N7 N6 N1 N3 N9 N7 O6 N1 N2 N3 ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- , , ARG R ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ARG R NE -7.030 1.898 -7.030 1.493 -7.030 2.341 -7.030 -7.030 -7.030 -0.255 -7.030 -7.030 1.690 -7.030 3.461 2.984 -7.030 -7.030 1.192 NE NH1 -7.030 3.439 -7.030 2.504 -7.030 2.793 1.311 -7.030 -7.030 1.941 -7.030 -7.030 2.788 -7.030 4.829 4.718 -7.030 -7.030 2.291 NH1 NH2 -7.030 3.474 -7.030 2.781 -7.030 2.793 2.004 -7.030 -7.030 1.353 -7.030 -7.030 2.788 -7.030 4.984 5.175 -7.030 -7.030 2.866 NH2 , LYS K ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- LYS K NZ -6.133 2.852 -6.133 2.670 -6.133 2.236 0.503 -6.133 -6.133 2.335 -6.133 -6.133 2.010 -6.133 4.189 4.531 -6.133 -6.133 1.181 NZ , SER S ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SER S OG -5.451 3.016 1.582 2.744 -5.451 1.870 1.870 3.093 -5.451 3.346 2.787 -5.451 2.381 -5.451 3.424 3.049 -5.451 2.597 1.750 OG , THR T ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- THR T OG1 -4.920 2.093 1.805 3.104 -4.920 1.688 0.997 3.074 -4.920 2.646 1.730 -4.920 2.135 -4.920 2.772 3.331 -4.920 3.177 1.387 OG1 , ASN N ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ASN N OD1 -5.924 -5.924 2.847 -5.924 -5.924 -5.924 -5.924 3.136 -5.924 -5.924 4.636 -5.924 -5.924 -5.924 -5.924 -5.924 -5.924 3.933 -5.924 OD1 ND2 -5.924 3.803 -5.924 4.011 -5.924 3.606 -5.924 -5.924 -5.924 4.430 -5.924 -5.924 3.072 -5.924 3.422 4.316 -5.924 -5.924 3.933 ND2 , GLN Q ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GLN Q OE1 -5.561 -5.561 2.318 -5.561 -5.561 -5.561 -5.561 3.522 -5.561 -5.561 4.662 -5.561 -5.561 -5.561 -5.561 -5.561 -5.561 4.383 -5.561 OE1 NE2 -5.561 3.234 -5.561 4.189 -5.561 3.011 1.221 -5.561 -5.561 4.816 -5.561 -5.561 3.207 -5.561 3.403 4.607 -5.561 -5.561 4.096 NE2 , HIS H ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HIS H ND1 -4.710 2.298 -4.710 3.396 -4.710 2.586 2.586 2.586 -4.710 -4.710 3.321 -4.710 -4.710 -4.710 5.056 5.280 -4.710 -4.710 2.977 ND1 NE2 -4.710 3.907 -4.710 4.494 -4.710 3.972 -4.710 2.586 -4.710 3.321 -4.710 -4.710 3.321 -4.710 5.056 6.235 -4.710 2.977 2.977 NE2 , TYR Y ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TYR Y OH -4.852 2.512 1.128 2.735 -4.852 2.108 2.108 3.360 -4.852 3.247 3.401 -4.852 3.758 -4.852 3.415 2.499 -4.852 3.597 2.499 OH , GLU E ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GLU E OE1 -5.231 -5.231 1.414 -5.231 -5.231 -5.231 -5.231 4.535 -5.231 -5.231 2.437 -5.231 -5.231 -5.231 -5.231 -5.231 -5.231 3.346 -5.231 OE1 OE2 -5.231 -5.231 1.819 -5.231 -5.231 -5.231 -5.231 4.266 -5.231 -5.231 2.660 -5.231 -5.231 -5.231 -5.231 -5.231 -5.231 3.192 -5.231 OE2 , ASP D ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ASP D OD1 -5.124 -5.124 1.107 -5.124 -5.124 -5.124 -5.124 4.284 -5.124 -5.124 3.044 -5.124 -5.124 -5.124 -5.124 -5.124 -5.124 4.183 -5.124 OD1 OD2 -5.124 -5.124 3.051 -5.124 -5.124 -5.124 -5.124 4.725 -5.124 -5.124 2.821 -5.124 -5.124 -5.124 -5.124 -5.124 -5.124 4.183 -5.124 OD2 , CYS C ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CYS C SG -2.890 -2.890 -2.890 5.566 -2.890 4.246 -2.890 -2.890 -2.890 4.288 4.288 -2.890 -2.890 - - - - - - SG , MET M ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MET M SD -2.773 -2.773 3.752 -2.773 - - - - -2.773 -2.773 4.775 -2.773 -2.773 - - - - - - SD , TRP W ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TRP W NE1 -3.332 4.698 -3.332 3.600 -3.332 5.274 -3.332 -3.332 -3.332 -3.332 -3.332 -3.332 3.930 - - - - - - NE1