,Espinosa Angarica,V. et al.(2008) Prediction of TF target sites based on atomistic models of protein-DNA complexes. BMC Bioinformatics, 9:436. ,Fri Jul 18 16:21:05 2025 entries=635 ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- , AMINOACIDS THYMINE CYTOSINE ADENINE GUANINE AMINOACIDS ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- , N1 O2 N3 O4 N1 O2 N3 N4 N9 N7 N6 N1 N3 N9 N7 O6 N1 N2 N3 ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- , , ARG R ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ARG R NE -7.133 0.436 -7.133 1.129 -7.133 -0.422 -0.422 -0.422 -7.133 -0.339 0.759 -7.133 -7.133 -7.133 1.586 1.075 -7.133 -7.133 1.075 NE NH1 -7.133 1.640 -0.662 1.976 -7.133 1.368 -7.133 1.774 -7.133 0.353 1.452 -7.133 2.550 -7.133 1.922 2.749 -7.133 1.075 1.363 NH1 NH2 -7.133 1.822 -0.662 2.045 -7.133 1.656 -0.422 0.963 -7.133 1.739 1.857 -7.133 2.145 -7.133 1.922 2.749 -7.133 1.586 1.075 NH2 , LYS K ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- LYS K NZ -6.203 0.460 -0.231 1.846 -6.203 1.259 0.007 0.700 -6.203 1.699 2.035 -6.203 1.699 -6.203 2.352 2.891 -6.203 0.407 1.792 NZ , SER S ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SER S OG -5.525 1.535 -0.071 2.228 -5.525 1.957 -5.525 2.244 -5.525 2.327 2.194 -5.525 0.251 -5.525 2.867 2.867 -5.525 1.259 2.356 OG , THR T ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- THR T OG1 -4.970 2.749 2.056 2.462 -4.970 1.603 0.911 2.519 -4.970 2.091 3.189 -4.970 2.602 -4.970 3.506 2.919 -4.970 2.003 2.003 OG1 , ASN N ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ASN N OD1 -6.004 2.097 1.874 3.127 -6.004 2.114 -6.004 2.807 -6.004 2.197 2.757 -6.004 -6.004 -6.004 1.821 2.737 -6.004 2.514 3.325 OD1 ND2 -6.004 2.097 1.874 3.053 -6.004 1.826 -6.004 1.826 -6.004 1.910 2.602 -6.004 2.197 -6.004 3.073 3.207 -6.004 -6.004 2.514 ND2 , GLN Q ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GLN Q OE1 -5.652 2.237 -5.652 3.153 -5.652 1.091 -5.652 3.574 -5.652 1.866 2.782 -5.652 1.866 -5.652 2.876 3.099 -5.652 1.490 1.490 OE1 NE2 -5.652 0.851 0.851 2.237 -5.652 3.035 -5.652 -5.652 -5.652 1.866 2.782 -5.652 1.866 -5.652 2.588 2.876 -5.652 1.490 1.490 NE2 , HIS H ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HIS H ND1 -4.736 -4.736 -4.736 -4.736 -4.736 -4.736 -4.736 2.523 -4.736 2.606 2.606 -4.736 -4.736 -4.736 -4.736 4.021 -4.736 -4.736 -4.736 ND1 NE2 -4.736 4.075 -4.736 2.284 -4.736 2.523 -4.736 3.216 -4.736 -4.736 2.606 -4.736 2.606 -4.736 3.616 -4.736 -4.736 2.923 -4.736 NE2 , TYR Y ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TYR Y OH -4.927 3.028 1.776 2.874 -4.927 2.016 -4.927 1.323 -4.927 3.197 2.504 -4.927 1.407 -4.927 3.514 3.514 -4.927 2.821 3.331 OH , GLU E ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GLU E OE1 -5.318 2.446 2.041 2.600 -5.318 2.503 0.895 3.602 -5.318 0.979 2.923 -5.318 0.979 -5.318 1.295 2.680 -5.318 -5.318 2.680 OE1 OE2 -5.318 2.264 -5.318 2.600 -5.318 1.588 -5.318 3.459 -5.318 0.979 2.769 -5.318 -5.318 -5.318 1.987 2.680 -5.318 1.987 -5.318 OE2 , ASP D ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ASP D OD1 -5.231 2.123 1.718 2.411 -5.231 1.958 1.958 2.650 -5.231 2.446 3.139 -5.231 -5.231 -5.231 -5.231 3.273 -5.231 2.357 2.763 OD1 OD2 -5.231 1.026 2.411 2.816 -5.231 1.958 -5.231 3.903 -5.231 2.041 2.957 -5.231 1.348 -5.231 2.763 2.763 -5.231 1.665 2.357 OD2 , CYS C ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CYS C SG -2.773 -2.773 -2.773 4.103 -2.773 -2.773 -2.773 4.342 -2.773 4.425 4.425 -2.773 -2.773 -2.773 4.742 -2.773 -2.773 -2.773 -2.773 SG , MET M ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MET M SD -2.773 3.768 -2.773 -2.773 - - - - -2.773 -2.773 4.091 -2.773 4.091 - - - - - - SD , TRP W ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TRP W NE1 -3.367 4.687 -3.367 -3.367 - - - - -3.367 -3.367 3.912 -3.367 -3.367 -3.367 4.228 4.228 -3.367 -3.367 4.921 NE1