,Espinosa Angarica,V. et al.(2008) Prediction of TF target sites based on atomistic models of protein-DNA complexes. BMC Bioinformatics, 9:436. ,Fri Dec 13 01:49:46 2024 entries=634 ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- , AMINOACIDS THYMINE CYTOSINE ADENINE GUANINE AMINOACIDS ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- , N1 O2 N3 O4 N1 O2 N3 N4 N9 N7 N6 N1 N3 N9 N7 O6 N1 N2 N3 ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- , , ARG R ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ARG R NE -7.126 0.438 -7.126 1.131 -7.126 -0.414 -0.414 -0.414 -7.126 -0.335 0.763 -7.126 -7.126 -7.126 1.594 1.084 -7.126 -7.126 1.084 NE NH1 -7.126 1.824 -0.660 1.904 -7.126 1.194 -7.126 1.531 -7.126 0.357 1.456 -7.126 2.497 -7.126 1.777 2.757 -7.126 1.084 1.371 NH1 NH2 -7.126 2.047 -0.660 2.172 -7.126 1.782 -0.414 0.971 -7.126 1.743 1.861 -7.126 1.610 -7.126 1.931 2.550 -7.126 1.594 1.084 NH2 , LYS K ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- LYS K NZ -6.205 0.459 -0.232 1.845 -6.205 1.398 0.013 0.705 -6.205 1.700 2.036 -6.205 1.700 -6.205 2.357 2.896 -6.205 0.413 1.798 NZ , SER S ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SER S OG -5.517 1.724 -0.064 2.130 -5.517 1.788 -5.517 2.124 -5.517 2.337 2.203 -5.517 0.260 -5.517 2.881 2.881 -5.517 1.272 2.370 OG , THR T ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- THR T OG1 -4.970 2.745 2.052 2.457 -4.970 2.010 0.914 2.521 -4.970 2.089 3.187 -4.970 2.600 -4.970 3.509 2.921 -4.970 2.005 2.005 OG1 , ASN N ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ASN N OD1 -6.004 2.097 1.874 3.053 -6.004 2.120 -6.004 2.813 -6.004 2.199 2.759 -6.004 -6.004 -6.004 1.827 2.926 -6.004 2.520 3.331 OD1 ND2 -6.004 2.097 1.874 2.886 -6.004 1.833 -6.004 1.833 -6.004 1.912 2.759 -6.004 1.912 -6.004 2.926 3.331 -6.004 1.135 3.080 ND2 , GLN Q ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GLN Q OE1 -5.652 2.455 -5.652 3.148 -5.652 -5.652 -5.652 3.576 -5.652 1.864 2.780 -5.652 1.864 -5.652 2.878 3.101 -5.652 1.492 1.492 OE1 NE2 -5.652 0.847 0.847 1.944 -5.652 3.037 -5.652 -5.652 -5.652 1.864 2.962 -5.652 1.864 -5.652 2.590 2.878 -5.652 1.492 1.492 NE2 , HIS H ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HIS H ND1 -4.745 -4.745 -4.745 -4.745 -4.745 -4.745 -4.745 2.518 -4.745 2.598 2.598 -4.745 -4.745 -4.745 -4.745 4.017 -4.745 -4.745 -4.745 ND1 NE2 -4.745 3.881 -4.745 2.273 -4.745 3.211 -4.745 3.211 -4.745 -4.745 2.598 -4.745 3.290 -4.745 3.611 -4.745 -4.745 2.918 -4.745 NE2 , TYR Y ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TYR Y OH -4.920 2.878 1.780 2.878 -4.920 2.026 -4.920 1.334 -4.920 3.203 2.510 -4.920 1.413 -4.920 3.524 3.524 -4.920 2.831 3.342 OH , GLU E ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GLU E OE1 -5.328 2.434 2.028 2.588 -5.328 2.497 0.889 3.596 -5.328 0.968 2.913 -5.328 0.968 -5.328 1.289 2.387 -5.328 -5.328 2.674 OE1 OE2 -5.328 2.251 -5.328 2.588 -5.328 1.582 -5.328 3.453 -5.328 0.968 2.759 -5.328 -5.328 -5.328 1.981 2.674 -5.328 1.981 -5.328 OE2 , ASP D ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ASP D OD1 -5.215 2.136 2.136 2.136 -5.215 1.284 1.977 2.382 -5.215 2.056 3.154 -5.215 -5.215 -5.215 -5.215 3.293 -5.215 2.377 2.782 OD1 OD2 -5.215 1.039 2.424 2.829 -5.215 1.977 -5.215 3.848 -5.215 2.056 2.972 -5.215 1.363 -5.215 2.782 3.070 -5.215 1.684 2.377 OD2 , CYS C ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CYS C SG -2.773 -2.773 -2.773 4.101 -2.773 -2.773 -2.773 4.346 -2.773 4.425 4.425 -2.773 -2.773 -2.773 4.746 -2.773 -2.773 -2.773 -2.773 SG , MET M ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MET M SD -2.773 3.763 -2.773 -2.773 - - - - -2.773 -2.773 4.088 -2.773 4.088 - - - - - - SD , TRP W ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TRP W NE1 -3.367 4.681 -3.367 -3.367 - - - - -3.367 -3.367 3.907 -3.367 -3.367 -3.367 4.228 4.228 -3.367 -3.367 4.921 NE1