# Contreras-Moreira,B. (2010) 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic Acids Research, 38: D91-D97 # Wed Dec 18 20:15:19 2024 # Legend: DG(C1):DC(D12) corresponds to a GC base pair including nucleotide 1 from chain C # and nucleotide 12 from chain D found in the original Protein Data Bank coordinates. # WARNING: check out base numbers in case there are breaks (missing unpaired nucleotides) with respect to original PDB coordinates >10mh_A:S-adenosyl-L-methionine-dependent_methyltransferases; title=TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH ADOHCY AND HEMIMETHYLATED DNA CONTAINING 5,6-DIHYDRO-5-AZACYTOSINE AT THE TARGET organism=Haemophilus haemolyticus DNA sequence DG(C422):DC(B413) DT(C423):DA(B412) DC(C424):DG(B411) DA(C425):DT(B410) DG(C426):DC(B409) 5NC(C427):DG(B408) DG(C428):5CM(B407) DC(C429):DG(B406) DA(C430):DT(B405) DT(C431):DA(B404) DG(C432):DC(B403) DG(C433):DC(B402) chainA ( 81) CYS81 0 0 0 0 0 7 0 0 0 0 0 0 ( 86) ILE86 0 0 1 3 0 0 0 0 0 0 0 0 ( 87) SER87 0 0 0 0 12 0 3 0 0 0 0 0 (119) GLU119 0 0 0 0 0 11 0 0 0 0 0 0 (121) VAL121 0 0 0 0 0 5 0 0 0 0 0 0 (163) ARG163 0 0 0 0 0 4 0 0 0 0 0 0 (165) ARG165 0 0 0 0 0 9 0 0 0 0 0 0 (237) GLN237 0 0 0 0 62 7 21 0 0 0 0 0 (239) GLU239 0 0 0 0 0 0 4 0 0 0 0 0 (240) ARG240 0 0 0 6 22 0 0 0 0 0 0 0 (260) ALA260 0 0 0 0 0 0 0 0 1 0 0 0 (304) ASN304 0 0 0 0 0 2 0 0 0 0 0 0 prot.sequence mieikdkqltglrfidlfaglggfrlalescgaecvysnewdkyaqevyemnfgekpegditqvnektipdhdilcagfpcqafsISgkqkgfedsrgtlffdiarivrekkpkvvfmenvknfashdngntlevvkntmneldysfhakvlnaldygipqkreriymicfrndlniqnfqfpkpfelntfvkdlllpdsevehlvidrkdlvmtnqeieqttpktvRlgivgkggQgeRiystrgiaitlSaygggifAktggylvngktrklhprecarvmgypdsykvhpstsqaykqfgnsvvinvlqyiaynigsslnfkpy >1a02_FJN:p53-like_transcription_factors;E_set_domains; title=STRUCTURE OF THE DNA BINDING DOMAINS OF NFAT, FOS AND JUN BOUND TO DNA organism=HOMO SAPIENS DNA sequence DC(B5003):DG(A4020) DT(B5004):DA(A4019) DA(B5005):DT(A4018) DT(B5006):DA(A4017) DG(B5007):DC(A4016) DA(B5008):DT(A4015) DA(B5009):DT(A4014) DA(B5010):DT(A4013) DC(B5011):DG(A4012) DA(B5012):DT(A4011) DA(B5013):DT(A4010) DA(B5014):DT(A4009) DT(B5015):DA(A4008) DT(B5016):DA(A4007) DT(B5017):DA(A4006) DT(B5018):DA(A4005) DC(B5019):DG(A4004) DC(B5020):DG(A4003) chainN ( 23) ARG421 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 11 5 ( 26) TYR424 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 7 0 0 ( 29) GLU427 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 6 0 ( 32) ARG430 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 10 (139) ARG537 0 0 0 0 0 0 0 0 0 0 3 2 1 0 0 0 0 0 (173) GLN571 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 6 0 (174) ARG572 0 0 0 0 0 0 0 0 0 0 0 0 6 3 0 0 0 0 chainF ( 8) ASN147 0 0 5 8 8 4 0 0 0 0 0 0 0 0 0 0 0 0 ( 11) ALA150 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 12) ALA151 0 0 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 ( 16) ARG155 0 0 0 0 0 0 5 2 0 0 0 0 0 0 0 0 0 0 chainJ ( 6) ASN272 0 0 0 0 0 0 0 0 7 4 1 0 0 0 0 0 0 0 ( 9) ALA275 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 ( 13) SER279 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 ( 14) ARG280 0 0 0 0 0 9 1 0 0 0 0 0 0 0 0 0 0 0 prot.sequence rrirrerNkmAAaksRnrrreltdtlqaetdqledeksalqteianllkekek/rkrmrNriAaskSRkrkleriarleekvktlkaqnselastanmlreqvaql/wplssqsgsyelrievqpkphhRahYetEgsRgavkaptgghpvvqlhgymenkplglqifigtaderilkphafyqvhritgktvtttsyekivgntkvleiplepknnmratidcagilklrnadielrkgetdigRkntrvrlvfrvhipessgrivslqtasnpiecsQRsahelpmverqdtdsclvyggqqmiltgqnftseskvvftekttdgqqiwemeatvdkdksqpnmlfveipeyrnkhirtpvkvnfyvingkrkrsqpqhftyhpv >1a02_J:Leucine_zipper_domain;A_DNA-binding_domain_in_eukaryotic_transcription_factors; title=STRUCTURE OF THE DNA BINDING DOMAINS OF NFAT, FOS AND JUN BOUND TO DNA organism=HOMO SAPIENS DNA sequence DC(B5003):DG(A4020) DT(B5004):DA(A4019) DA(B5005):DT(A4018) DT(B5006):DA(A4017) DG(B5007):DC(A4016) DA(B5008):DT(A4015) DA(B5009):DT(A4014) DA(B5010):DT(A4013) DC(B5011):DG(A4012) DA(B5012):DT(A4011) DA(B5013):DT(A4010) DA(B5014):DT(A4009) DT(B5015):DA(A4008) DT(B5016):DA(A4007) DT(B5017):DA(A4006) DT(B5018):DA(A4005) DC(B5019):DG(A4004) DC(B5020):DG(A4003) chainJ ( 6) ASN272 0 0 0 0 0 0 0 0 7 4 1 0 0 0 0 0 0 0 ( 9) ALA275 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 ( 13) SER279 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 ( 14) ARG280 0 0 0 0 0 9 1 0 0 0 0 0 0 0 0 0 0 0 prot.sequence rkrmrNriAaskSRkrkleriarleekvktlkaqnselastanmlreqvaql >1a0a_AB: title=PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO4/DNA COMPLEX organism=Saccharomyces cerevisiae DNA sequence DC(D1):DG(C17) DT(D2):DA(C16) DA(D3):DT(C15) DG(D4):DC(C14) DT(D5):DA(C13) DC(D6):DG(C12) DC(D7):DG(C11) DC(D8):DG(C10) DA(D9):DT(C9) DC(D10):DG(C8) DG(D11):DC(C7) DT(D12):DA(C6) DG(D13):DC(C5) DT(D14):DA(C4) DG(D15):DC(C3) DA(D16):DT(C2) DG(D17):DC(C1) chainA ( 2) LYS1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 ( 3) ARG2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 ( 6) HIS5 0 0 0 0 0 0 0 0 0 0 0 3 5 0 0 0 0 ( 10) GLU9 0 0 0 0 0 0 0 0 0 0 0 14 12 0 0 0 0 ( 13) ARG12 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 ( 14) ARG13 0 0 0 0 0 0 0 0 0 6 5 1 0 0 0 0 0 chainB ( 3) ARG2 0 0 0 0 0 1 9 0 0 0 0 0 0 0 0 0 0 ( 6) HIS5 0 0 0 0 0 0 13 10 12 0 0 0 0 0 0 0 0 ( 7) LYS6 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 10) GLU9 0 0 0 0 0 0 22 14 5 0 0 0 0 0 0 0 0 ( 13) ARG12 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 ( 14) ARG13 0 0 0 0 0 0 0 0 2 7 7 1 0 0 0 0 0 prot.sequence mKResHkhaEqaRRnrlavalhelaslipaewkqqnvsaapskattveaacryirhlqqngst/mkResHKhaEqaRRnrlavalhelaslipaewkqqnvsaapskattveaacryirhlqqngst >1a1f_A:beta-beta-alpha_zinc_fingers; title=DSNR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GACC SITE) organism=Mus musculus DNA sequence DG(B2):DC(C61) DC(B3):DG(C60) DG(B4):DC(C59) DT(B5):DA(C58) DG(B6):DC(C57) DG(B7):DC(C56) DG(B8):DC(C55) DA(B9):DT(C54) DC(B10):DG(C53) DC(B11):DG(C52) chainA ( 16) ASP118 0 0 0 0 0 0 0 1 10 0 ( 18) SER120 0 0 0 0 0 0 0 0 5 7 ( 19) ASN121 0 0 0 0 0 0 4 10 1 0 ( 22) ARG124 0 0 0 0 0 15 12 4 0 0 ( 44) ARG146 0 0 0 0 6 10 2 0 0 0 ( 45) SER147 0 0 0 0 0 0 0 1 0 0 ( 46) ASP148 0 0 0 0 0 2 5 10 0 0 ( 47) HIS149 0 0 0 24 11 0 0 0 0 0 ( 50) THR152 0 0 0 1 0 0 0 0 0 0 ( 72) ARG174 0 17 11 8 0 0 0 0 0 0 ( 73) SER175 0 0 0 0 1 1 0 0 0 0 ( 74) ASP176 0 0 1 5 4 0 0 0 0 0 ( 75) GLU177 3 6 0 0 0 0 0 0 0 0 ( 78) ARG180 12 4 0 0 0 0 0 0 0 0 prot.sequence rpyacpvescdrrfsDsSNltRhirihtgqkpfqcricmrnfsRSDHltThirthtgekpfacdicgrkfaRSDErkRhtkihl >1a1g_A:beta-beta-alpha_zinc_fingers; title=DSNR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCGT SITE) organism=Mus musculus DNA sequence DG(B2):DC(C61) DC(B3):DG(C60) DG(B4):DC(C59) DT(B5):DA(C58) DG(B6):DC(C57) DG(B7):DC(C56) DG(B8):DC(C55) DC(B9):DG(C54) DG(B10):DC(C53) DT(B11):DA(C52) chainA ( 18) SER120 0 0 0 0 0 0 0 0 0 1 ( 19) ASN121 0 0 0 0 0 0 2 9 0 0 ( 22) ARG124 0 0 0 0 0 10 11 4 0 0 ( 44) ARG146 0 0 0 0 11 12 4 0 0 0 ( 46) ASP148 0 0 0 0 0 2 8 3 0 0 ( 47) HIS149 0 0 0 28 12 0 0 0 0 0 ( 50) THR152 0 0 0 1 0 0 0 0 0 0 ( 72) ARG174 0 16 14 10 0 0 0 0 0 0 ( 74) ASP176 0 0 1 4 1 0 0 0 0 0 ( 75) GLU177 1 5 0 0 0 0 0 0 0 0 ( 78) ARG180 12 9 0 0 0 0 0 0 0 0 prot.sequence rpyacpvescdrrfsdsSNltRhirihtgqkpfqcricmrnfsRSDHltThirthtgekpfacdicgrkfaRsDErkRhtkihl >1a1h_A:C2H2_and_C2HC_zinc_fingers; title=QGSR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCAC SITE) organism=Mus musculus DNA sequence DG(B2):DC(C61) DC(B3):DG(C60) DG(B4):DC(C59) DT(B5):DA(C58) DG(B6):DC(C57) DG(B7):DC(C56) DG(B8):DC(C55) DC(B9):DG(C54) DA(B10):DT(C53) DC(B11):DG(C52) chainA ( 16) GLN118 0 0 0 0 0 0 0 11 11 4 ( 19) SER121 0 0 0 0 0 0 0 3 0 0 ( 22) ARG124 0 0 0 0 0 12 11 4 0 0 ( 44) ARG146 0 0 0 0 12 13 2 0 0 0 ( 45) SER147 0 0 0 0 0 0 0 1 0 0 ( 46) ASP148 0 0 0 0 0 1 6 4 0 0 ( 47) HIS149 0 0 0 26 11 0 0 0 0 0 ( 50) THR152 0 0 0 1 0 0 0 0 0 0 ( 72) ARG174 0 16 13 11 0 0 0 0 0 0 ( 74) ASP176 0 0 1 5 1 0 0 0 0 0 ( 75) GLU177 1 6 0 0 0 0 0 0 0 0 ( 78) ARG180 14 8 0 0 0 0 0 0 0 0 prot.sequence rpyacpvescdrrfsQsgSltRhirihtgqkpfqcricmrnfsRSDHltThirthtgekpfacdicgrkfaRsDErkRhtkihlr >1a1i_A:beta-beta-alpha_zinc_fingers; title=RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCAC SITE) organism=Mus musculus DNA sequence DG(B2):DC(C61) DC(B3):DG(C60) DG(B4):DC(C59) DT(B5):DA(C58) DG(B6):DC(C57) DG(B7):DC(C56) DG(B8):DC(C55) DC(B9):DG(C54) DA(B10):DT(C53) DC(B11):DG(C52) chainA ( 16) ARG118 0 0 0 0 0 0 0 4 0 0 ( 19) ASP121 0 0 0 0 0 0 0 8 0 0 ( 22) ARG124 0 0 0 0 0 8 11 7 0 0 ( 44) ARG146 0 0 0 0 12 12 2 0 0 0 ( 45) SER147 0 0 0 0 0 0 0 1 0 0 ( 46) ASP148 0 0 0 0 0 1 7 4 0 0 ( 47) HIS149 0 0 0 26 10 0 0 0 0 0 ( 50) THR152 0 0 0 1 0 0 0 0 0 0 ( 72) ARG174 0 13 13 12 0 0 0 0 0 0 ( 74) ASP176 0 0 1 6 1 0 0 0 0 0 ( 75) GLU177 1 6 0 0 0 0 0 0 0 0 ( 78) ARG180 11 6 0 0 0 0 0 0 0 0 prot.sequence rpyacpvescdrrfsRsaDltRhirihtgqkpfqcricmrnfsRSDHltThirthtgekpfacdicgrkfaRsDErkRhtkihlr >1a1j_A:beta-beta-alpha_zinc_fingers; title=RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCGT SITE) organism=Mus musculus DNA sequence DG(B2):DC(C61) DC(B3):DG(C60) DG(B4):DC(C59) DT(B5):DA(C58) DG(B6):DC(C57) DG(B7):DC(C56) DG(B8):DC(C55) DC(B9):DG(C54) DG(B10):DC(C53) DT(B11):DA(C52) chainA ( 16) ARG118 0 0 0 0 0 0 0 4 0 0 ( 19) ASP121 0 0 0 0 0 0 1 7 0 0 ( 22) ARG124 0 0 0 0 0 10 11 6 0 0 ( 44) ARG146 0 0 0 0 14 14 5 0 0 0 ( 46) ASP148 0 0 0 0 0 1 9 3 0 0 ( 47) HIS149 0 0 0 30 12 0 0 0 0 0 ( 50) THR152 0 0 0 1 0 0 0 0 0 0 ( 72) ARG174 0 14 13 9 0 0 0 0 0 0 ( 74) ASP176 0 0 0 3 1 0 0 0 0 0 ( 75) GLU177 0 6 0 0 0 0 0 0 0 0 ( 78) ARG180 11 9 0 0 0 0 0 0 0 0 prot.sequence rpyacpvescdrrfsRsaDltRhirihtgqkpfqcricmrnfsRSDHltThirthtgekpfacdicgrkfaRsDErkRhtkihl >1a1k_A:beta-beta-alpha_zinc_fingers; title=RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GACC SITE) organism=Mus musculus DNA sequence DG(C52):DC(B11) DG(C53):DC(B10) DT(C54):DA(B9) DC(C55):DG(B8) DC(C56):DG(B7) DC(C57):DG(B6) DA(C58):DT(B5) DC(C59):DG(B4) DG(C60):DC(B3) DC(C61):DG(B2) chainA ( 16) ARG118 0 3 2 0 0 0 0 0 0 0 ( 19) ASP121 0 0 1 6 0 0 0 0 0 0 ( 22) ARG124 0 0 7 13 11 0 0 0 0 0 ( 44) ARG146 0 0 0 2 14 12 0 0 0 0 ( 45) SER147 0 0 1 0 0 0 0 0 0 0 ( 46) ASP148 0 0 10 7 1 0 0 0 0 0 ( 47) HIS149 0 0 0 0 0 12 27 0 0 0 ( 50) THR152 0 0 0 0 0 0 1 0 0 0 ( 72) ARG174 0 0 0 0 0 0 12 14 15 0 ( 74) ASP176 0 0 0 0 0 1 5 2 0 0 ( 75) GLU177 0 0 0 0 0 0 0 0 7 1 ( 78) ARG180 0 0 0 0 0 0 0 0 7 12 prot.sequence rpyacpvescdrrfsRsaDltRhirihtgqkpfqcricmrnfsRSDHltThirthtgekpfacdicgrkfaRsDErkRhtkihlr >1a1l_A:beta-beta-alpha_zinc_fingers; title=ZIF268 ZINC FINGER-DNA COMPLEX (GCAC SITE) organism=Mus musculus DNA sequence DG(C52):DC(B11) DT(C53):DA(B10) DG(C54):DC(B9) DC(C55):DG(B8) DC(C56):DG(B7) DC(C57):DG(B6) DA(C58):DT(B5) DC(C59):DG(B4) DG(C60):DC(B3) DC(C61):DG(B2) chainA ( 16) ARG118 0 0 2 0 0 0 0 0 0 0 ( 19) GLU121 0 0 4 2 0 0 0 0 0 0 ( 22) ARG124 0 0 6 11 9 0 0 0 0 0 ( 44) ARG146 0 0 0 2 12 13 0 0 0 0 ( 46) ASP148 0 0 3 6 2 0 0 0 0 0 ( 47) HIS149 0 0 0 0 0 12 28 0 0 0 ( 50) THR152 0 0 0 0 0 0 1 0 0 0 ( 72) ARG174 0 0 0 0 0 0 10 11 16 0 ( 74) ASP176 0 0 0 0 0 1 4 1 0 0 ( 75) GLU177 0 0 0 0 0 0 0 0 8 1 ( 78) ARG180 0 0 0 0 0 0 0 0 9 12 prot.sequence rpyacpvescdrrfsRsDEltRhirihtgqkpfqcricmrnfsRSDHltThirthtgekpfacdicgrkfaRsDErkRhtkihlr >1a35_A:Eukaryotic_DNA_topoisomerase_I,_N-terminal_DNA-binding_fragment;DNA_breaking-rejoining_enzymes; title=HUMAN TOPOISOMERASE I/DNA COMPLEX organism=Homo sapiens DNA sequence DA(C1):DT(D122) DA(C2):BRU(D121) DA(C3):DT(D120) DA(C4):DT(D119) DA(C5):DT(D118) DG(C6):DC(D117) DA(C7):DT(D116) DC(C8):DG(D115) DT(C9):DA(D114) DT(C10):DA(D113) DA(C11):BRU(D112) DG(C12):DC(D111) DA(C13):BRU(D110) DA(C14):BRU(D109) DA(C15):BRU(D108) DA(C16):BRU(D107) DA(C17):DT(D106) BRU(C18):DA(D105) BRU(C19):DA(D104) DT(C20):DA(D103) DT(C21):DA(D102) DT(C22):DA(D101) chainA (138) ASN352 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 (150) ARG364 0 0 0 0 0 0 0 0 0 1 3 9 0 0 0 0 0 0 0 0 0 0 (212) TYR426 0 0 0 0 0 0 8 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (214) MET428 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 (277) ASN491 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (279) LYS493 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (318) LYS532 0 0 0 0 0 0 0 0 3 4 0 0 0 0 0 0 0 0 0 0 0 0 (427) THR718 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 (431) ASN722 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence ikwkflehkgpvfappyeplpenvkfyydgkvmklspkaeevatffakmldheyttkeifrknffkdwrkemtneekniitnlskcdftqmsqyfkaqtearkqmskeeklkikeenekllkeygfcimdnhkerianfkieppglfrgRgnhpkmgmlkrrimpediiincskdakvpspppghkwkevrhdnkvtwlvswteniqgsiKYiMlnpssrikgekdwqkyetarrlkkcvdkirnqyredwkskemkvrqravalyfidklalragNeKeegetadtvgccslrvehinlhpeldgqeyvvefdflgKdsiryynkvpvekrvfknlqlfmenkqpeddlfdrlntgilnkhlqdlmegltaKvfrtynasitlqqqlkeltapdenipakilsynranravailcnhqraqialgTsklNfldpritvawckkwgvpiekiynktqrekfawaidmadedyef >1a36_A:Eukaryotic_DNA_topoisomerase_I,_N-terminal_DNA-binding_fragment;DNA_breaking-rejoining_enzymes;Eukaryotic_DNA_topoisomerase_I,_dispensable_insert_domain; title=TOPOISOMERASE I/DNA COMPLEX organism=Homo sapiens DNA sequence DA(B1):DT(C122) DA(B2):DT(C121) DA(B3):DT(C120) DA(B4):DT(C119) DA(B5):DT(C118) DG(B6):DC(C117) DA(B7):DT(C116) DC(B8):DG(C115) DT(B9):DA(C114) DT(B10):DA(C113) DA(B11):DT(C112) DG(B12):DC(C111) DA(B13):DT(C110) DA(B14):DT(C109) DA(B15):DT(C108) DA(B16):DT(C107) DA(B17):DT(C106) DT(B18):DA(C105) DT(B19):DA(C104) DT(B20):DA(C103) DT(B21):DA(C102) DT(B22):DA(C101) chainA (138) ASN352 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 (150) ARG364 0 0 0 0 0 0 0 0 0 0 1 14 0 0 0 0 0 0 0 0 0 0 (212) TYR426 0 0 0 0 0 0 9 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (214) MET428 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 (277) ASN491 0 0 0 0 0 2 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (279) LYS493 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (318) LYS532 0 0 0 0 0 0 0 0 6 4 0 0 0 0 0 0 0 0 0 0 0 0 (497) THR718 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 (501) ASN722 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 (524) ASN745 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 prot.sequence ikwkflehkgpvfappyeplpenvkfyydgkvmklspkaeevatffakmldheyttkeifrknffkdwrkemtneekniitnlskcdftqmsqyfkaqtearkqmskeeklkikeenekllkeygfcimdnhkeriaNfkieppglfrgRgnhpkmgmlkrrimpediiincskdakvpspppghkwkevrhdnkvtwlvswteniqgsikYiMlnpssrikgekdwqkyetarrlkkcvdkirnqyredwkskemkvrqravalyfidklalragNeKeegetadtvgccslrvehinlhpeldgqeyvvefdflgKdsiryynkvpvekrvfknlqlfmenkqpeddlfdrlntgilnkhlqdlmegltakvfrtynasitlqqqlkeltapdenipakilsynranravailcnhqeksmmnlqtkidakkeqladarrdlksakadakvmkdaktkkvveskkkavqrleeqlmklevqatdreenkqialgTsklNfldpritvawckkwgvpiekiyNktqrekfawaidmadedyef >1a3q_AB: title=HUMAN NF-KAPPA-B P52 BOUND TO DNA organism=Homo sapiens DNA sequence DG(C505):DC(D615) DG(C506):DC(D614) DG(C507):DC(D613) DG(C508):DC(D612) DA(C509):DT(D611) DA(C510):DT(D610) DT(C511):DA(D609) DC(C512):DG(D608) DC(C513):DG(D607) DC(C514):DG(D606) DC(C515):DG(D605) chainA ( 16) ARG52 0 0 0 0 0 0 0 7 10 8 0 ( 18) ARG54 0 0 0 0 0 0 0 0 1 10 5 ( 19) TYR55 0 0 0 0 0 0 8 2 0 0 0 ( 21) CYS57 0 0 0 0 0 0 0 1 0 0 0 ( 22) GLU58 0 0 0 0 0 0 0 8 6 2 0 ( 26) HIS62 0 0 0 0 0 0 0 0 0 4 12 (179) LYS221 0 0 0 0 0 0 2 8 0 0 0 chainB ( 16) ARG52 0 8 6 4 0 0 0 0 0 0 0 ( 18) ARG54 3 10 1 0 0 0 0 0 0 0 0 ( 19) TYR55 0 0 0 1 9 0 0 0 0 0 0 ( 21) CYS57 0 0 0 1 0 0 0 0 0 0 0 ( 22) GLU58 0 1 9 10 0 0 0 0 0 0 0 ( 26) HIS62 4 4 0 0 0 0 0 0 0 0 0 (179) LYS221 0 0 1 7 5 0 0 0 0 0 0 (210) LYS252 0 0 0 0 0 1 0 0 0 0 0 prot.sequence gpylviveqpkqrgfRfRYgCEgpsHgglpgassekgrktyptvkicnyegpakievdlvthsdpprahahslvgkqcselgicavsvgpkdmtaqfnnlgvlhvtkknmmgtmiqklqrqrlrsrpqglteaeqreleqeakelkkvmdlsivrlrfsaflrslplkpvisqpihdsKspgasnlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdfsptdvhkqyaivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyyp/gpylviveqpkqrgfRfRYgCEgpsHgglpgassekgrktyptvkicnyegpakievdlvthsdpprahahslvgkqcselgicavsvgpkdmtaqfnnlgvlhvtkknmmgtmiqklqrqrlrsrpqglteaeqreleqeakelkkvmdlsivrlrfsaflrslplkpvisqpihdsKspgasnlkisrmdktagsvrggdevyllcdKvqkddievrfyeddengwqafgdfsptdvhkqyaivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyyp >1a6y_AB: title=REVERBA ORPHAN NUCLEAR RECEPTOR/DNA COMPLEX organism=Homo sapiens DNA sequence DC(C600):DG(D640) DA(C601):DT(D639) DA(C602):DT(D638) DC(C603):DG(D637) DT(C604):DA(D636) DA(C605):DT(D635) DG(C606):DC(D634) DG(C607):DC(D633) DT(C608):DA(D632) DC(C609):DG(D631) DA(C610):DT(D630) DC(C611):DG(D629) 5IU(C612):DA(D628) DA(C613):DT(D627) DG(C614):DC(D626) DG(C615):DC(D625) DT(C616):DA(D624) DC(C617):DG(D623) DA(C618):DT(D622) DG(C619):DC(D621) chainA ( 14) HIS112 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 21) GLU119 0 0 0 0 0 0 1 10 6 0 0 0 0 0 0 0 0 0 0 0 ( 24) LYS122 0 0 0 0 0 9 6 1 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) ARG126 0 0 0 0 0 0 8 16 5 0 0 0 0 0 0 0 0 0 0 0 ( 29) ARG127 0 0 0 0 0 0 0 0 0 10 7 0 0 0 0 0 0 0 0 0 ( 76) PHE173 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 24) GLU119 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5 6 0 0 0 ( 27) LYS122 0 0 0 0 0 0 0 0 0 0 0 0 0 1 7 1 0 0 0 0 ( 31) ARG126 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 7 2 0 0 0 ( 32) ARG127 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 10 0 ( 79) PHE173 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 ( 81) ARG175 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 prot.sequence llckvcgdvasgfHygvlacEgcKgffRRsiqqniqykrclknencsivrinrnrcqqcrfkkclsvgmsrdavrFgr/gmvllckvcgdvasgfhygvlacEgcKgffRRsiqqniqykrclknencsivrinrnrcqqcrfkkclsvgmsrdavrfgRipk >1a74_AB:His-Me_finger_endonucleases; title=I-PPOL HOMING ENDONUCLEASE/DNA COMPLEX organism=Physarum polycephalum DNA sequence DT(C402):DA(D421) DG(C403):DC(D420) DA(C404):DT(D419) DC(C405):DG(D418) DT(C406):DA(D417) DC(C407):DG(D416) DT(C408):DA(D415) DC(C409):DG(D414) DT(C410):DA(D413) DT(C411):DA(D412) DA(C412):DT(D411) DA(C413):DT(D410) DG(C414):DC(D409) DA(C415):DT(D408) DG(C416):DC(D407) DA(C417):DT(D406) DG(C418):DC(D405) DT(C419):DA(D404) DC(C420):DG(D403) DA(C421):DT(D402) chainA ( 54) ALA55 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 56) ASN57 0 0 0 0 4 7 4 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 60) ARG61 0 0 0 0 0 0 10 13 0 0 0 0 0 0 0 0 0 0 0 0 ( 62) GLN63 0 0 0 0 10 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 64) LYS65 5 6 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 66) THR67 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 71) VAL72 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 73) ARG74 0 0 0 8 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (115) LEU116 0 0 0 0 0 0 0 0 7 2 0 0 0 0 0 0 0 0 0 0 (119) LYS120 0 0 0 0 0 0 0 0 4 4 1 0 0 0 0 0 0 0 0 0 chainB ( 54) ALA55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 ( 56) ASN57 0 0 0 0 0 0 0 0 0 0 0 0 0 3 7 6 0 0 0 0 ( 60) ARG61 0 0 0 0 0 0 0 0 0 0 0 0 10 10 0 0 0 0 0 0 ( 62) GLN63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 11 0 0 0 0 ( 64) LYS65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 7 7 ( 66) THR67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 ( 73) ARG74 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 8 0 0 0 (115) LEU116 0 0 0 0 0 0 0 0 0 0 1 4 0 0 0 0 0 0 0 0 (119) LYS120 0 0 0 0 0 0 0 0 0 1 4 3 0 0 0 0 0 0 0 0 prot.sequence altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv/altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvvhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv >1a74_B:His-Me_finger_endonucleases; title=I-PPOL HOMING ENDONUCLEASE/DNA COMPLEX organism=Physarum polycephalum DNA sequence DT(C402):DA(D421) DG(C403):DC(D420) DA(C404):DT(D419) DC(C405):DG(D418) DT(C406):DA(D417) DC(C407):DG(D416) DT(C408):DA(D415) DC(C409):DG(D414) DT(C410):DA(D413) DT(C411):DA(D412) DA(C412):DT(D411) DA(C413):DT(D410) DG(C414):DC(D409) DA(C415):DT(D408) DG(C416):DC(D407) DA(C417):DT(D406) DG(C418):DC(D405) DT(C419):DA(D404) DC(C420):DG(D403) DA(C421):DT(D402) chainB ( 54) ALA55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 ( 56) ASN57 0 0 0 0 0 0 0 0 0 0 0 0 0 3 7 6 0 0 0 0 ( 60) ARG61 0 0 0 0 0 0 0 0 0 0 0 0 10 10 0 0 0 0 0 0 ( 62) GLN63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 11 0 0 0 0 ( 64) LYS65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 7 7 ( 66) THR67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 ( 73) ARG74 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 8 0 0 0 (115) LEU116 0 0 0 0 0 0 0 0 0 0 1 4 0 0 0 0 0 0 0 0 (119) LYS120 0 0 0 0 0 0 0 0 0 1 4 3 0 0 0 0 0 0 0 0 prot.sequence altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvvhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv >1aay_A:beta-beta-alpha_zinc_fingers; title=ZIF268 ZINC FINGER-DNA COMPLEX organism=Mus musculus DNA sequence DG(B2):DC(C61) DC(B3):DG(C60) DG(B4):DC(C59) DT(B5):DA(C58) DG(B6):DC(C57) DG(B7):DC(C56) DG(B8):DC(C55) DC(B9):DG(C54) DG(B10):DC(C53) DT(B11):DA(C52) chainA ( 16) ARG118 0 0 0 0 0 0 0 13 12 9 ( 18) ASP120 0 0 0 0 0 0 0 1 1 6 ( 19) GLU121 0 0 0 0 0 0 2 4 0 0 ( 22) ARG124 0 0 0 0 0 8 12 5 0 0 ( 44) ARG146 0 0 0 0 14 14 2 0 0 0 ( 46) ASP148 0 0 0 0 0 2 7 3 0 0 ( 47) HIS149 0 0 0 26 12 0 0 0 0 0 ( 50) THR152 0 0 0 1 0 0 0 0 0 0 ( 72) ARG174 0 13 12 11 0 0 0 0 0 0 ( 74) ASP176 0 0 1 7 1 0 0 0 0 0 ( 75) GLU177 1 5 0 0 0 0 0 0 0 0 ( 78) ARG180 12 4 0 0 0 0 0 0 0 0 prot.sequence rpyacpvescdrrfsRsDEltRhirihtgqkpfqcricmrnfsRSDHltThirthtgekpfacdicgrkfaRsDErkRhtkihlr >1ahd_P:Homeodomain-like; title=DETERMINATION OF THE NMR SOLUTION STRUCTURE OF AN ANTENNAPEDIA HOMEODOMAIN-DNA COMPLEX organism=DROSOPHILA SUBOBSCURA DNA sequence DG(A1):DC(B28) DA(A2):DT(B27) DA(A3):DT(B26) DA(A4):DT(B25) DG(A5):DC(B24) DC(A6):DG(B23) DC(A7):DG(B22) DA(A8):DT(B21) DT(A9):DA(B20) DT(A10):DA(B19) DA(A11):DT(B18) DG(A12):DC(B17) DA(A13):DT(B16) DG(A14):DC(B15) chainP ( 4) ARG3 0 0 0 0 0 0 0 0 0 0 3 11 5 0 ( 29) ARG28 0 1 6 0 0 0 0 0 0 0 0 0 0 0 ( 47) LYS46 0 0 0 2 0 0 0 0 0 0 0 0 0 0 ( 48) ILE47 0 0 0 0 0 0 0 1 5 0 0 0 0 0 ( 51) GLN50 0 0 0 0 0 2 10 5 1 0 0 0 0 0 ( 52) ASN51 0 0 0 0 0 0 0 0 0 4 1 0 0 0 ( 55) MET54 0 0 0 0 0 0 6 0 0 0 0 0 0 0 prot.sequence mrkRgrqtytryqtlelekefhfnryltRrrrieiahalslterqiKIwfQNrrMkwkkenktkgepg >1ais_AB: title=TATA-BINDING PROTEIN/TRANSCRIPTION FACTOR (II)B/TATA-BOX COMPLEX FROM PYROCOCCUS WOESEI organism=PYROCOCCUS WOESEI DNA sequence DA(C1401):DT(E1434) DA(C1402):DT(E1433) DC(C1403):DG(E1432) DT(C1404):DA(E1431) DT(C1405):DA(E1430) DA(C1406):DT(E1429) DC(C1407):DG(E1428) DT(C1408):DA(E1427) DT(C1409):DA(E1426) DT(C1410):DA(E1425) 5IU(C1411):DA(E1424) 5IU(C1412):DA(E1423) DA(C1413):DT(E1422) DA(C1414):DT(E1421) DA(C1415):DT(E1420) DG(C1416):DC(E1419) DC(C1417):DG(E1418) chainA ( 13) ASN13 0 0 0 0 0 0 0 0 0 0 5 5 0 0 0 0 0 ( 15) VAL15 0 0 0 0 0 0 0 0 0 0 0 5 2 0 0 0 0 ( 43) PHE43 0 0 0 0 0 0 0 0 0 0 0 0 0 16 2 0 0 ( 44) PRO44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 ( 58) LEU58 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 ( 60) PHE60 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 ( 66) VAL66 0 0 0 0 0 0 0 0 0 0 0 0 4 3 0 0 0 ( 68) THR68 0 0 0 0 0 0 0 0 0 0 0 5 4 0 0 0 0 (104) ASN104 0 0 0 0 0 0 0 0 0 0 5 6 0 0 0 0 0 (106) VAL106 0 0 0 0 0 0 0 0 0 2 5 0 0 0 0 0 0 (134) PHE134 0 0 0 0 0 0 0 9 15 0 0 0 0 0 0 0 0 (135) PRO135 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 (149) LEU149 0 0 0 0 0 0 0 0 5 2 0 0 0 0 0 0 0 (151) PHE151 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 (157) VAL157 0 0 0 0 0 0 0 0 5 4 0 0 0 0 0 0 0 (159) SER159 0 0 0 0 0 0 0 0 0 3 1 0 0 0 0 0 0 chainB prot.sequence mvdmskvklrieNiVasvdlfaqldlekvldlcpnskynpeeFPgiichlddpkvalLiFssgklVvTgaksvqdieravaklaqklksigvkfkrapqidvqnmVfsgdigrefnldvvaltlpnceyepeqFPgviyrvkepksviLlFssgkiVcSgakseadaweavrkllreldky/nlafalseldriTaQlklprhveeeaarlyreavrkglirgrSIesvmaacvyaacrLlKvprtlDeIadiarvdkkeigrsyrfiarnlnltpkklfvkptdyvNkfadelglsekvrrraieildeaykrgLTsgkspaglvaaalYiAsllegEkRtqrevaevarvtevtvrnrykelveklkikvpia >1akh_A:Homeodomain-like; title=MAT A1/ALPHA2/DNA TERNARY COMPLEX organism=SACCHAROMYCES CEREVISIAE DNA sequence DC(C3):DG(D42) DA(C4):DT(D41) DT(C5):DA(D40) DG(C6):DC(D39) DT(C7):DA(D38) DA(C8):DT(D37) DA(C9):DT(D36) DA(C10):DT(D35) DA(C11):DT(D34) DA(C12):DT(D33) DT(C13):DA(D32) DT(C14):DA(D31) DT(C15):DA(D30) DA(C16):DT(D29) DC(C17):DG(D28) DA(C18):DT(D27) DT(C19):DA(D26) DC(C20):DG(D25) DA(C21):DT(D24) chainA ( 39) ARG115 0 0 0 0 0 0 0 0 0 0 0 3 6 0 0 0 0 0 0 ( 40) VAL116 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 ( 43) ILE119 0 0 0 0 0 0 0 0 0 0 0 0 3 4 1 0 0 0 0 ( 44) ASN120 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 3 0 ( 47) MET123 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 ( 48) ARG124 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 15 13 prot.sequence ispqarafleevfrrkqslnskekeevakkcgitplqvRVwfINkrMRs >1akh_AB: title=MAT A1/ALPHA2/DNA TERNARY COMPLEX organism=SACCHAROMYCES CEREVISIAE DNA sequence DT(D24):DA(C21) DG(D25):DC(C20) DA(D26):DT(C19) DT(D27):DA(C18) DG(D28):DC(C17) DT(D29):DA(C16) DA(D30):DT(C15) DA(D31):DT(C14) DA(D32):DT(C13) DT(D33):DA(C12) DT(D34):DA(C11) DT(D35):DA(C10) DT(D36):DA(C9) DT(D37):DA(C8) DA(D38):DT(C7) DC(D39):DG(C6) DA(D40):DT(C5) DT(D41):DA(C4) DG(D42):DC(C3) chainA ( 39) ARG115 0 0 0 0 0 0 6 3 0 0 0 0 0 0 0 0 0 0 0 ( 40) VAL116 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 43) ILE119 0 0 0 0 1 4 3 0 0 0 0 0 0 0 0 0 0 0 0 ( 44) ASN120 0 3 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 47) MET123 0 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 48) ARG124 13 15 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 5) ARG132 0 0 0 0 0 0 0 0 0 0 0 0 2 13 8 1 0 0 0 ( 8) ARG135 0 0 0 0 0 0 0 0 0 1 7 7 2 0 0 0 0 0 0 ( 51) ASN178 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 ( 54) SER181 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 ( 55) ASN182 0 0 0 0 0 0 0 0 0 0 0 0 0 6 4 2 0 0 0 ( 58) ARG185 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 9 17 0 0 prot.sequence ispqarafleevfrrkqslnskekeevakkcgitplqvRVwfINkrMRs/tkpyRghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvSNrrRkektitiapeladllsgepl >1am9_AB: title=HUMAN SREBP-1A BOUND TO LDL RECEPTOR PROMOTER organism=Homo sapiens DNA sequence DA(F22):DT(G55) DG(F23):DC(G54) DA(F24):DT(G53) DT(F25):DA(G52) DC(F26):DG(G51) DA(F27):DT(G50) DC(F28):DG(G49) DC(F29):DG(G48) DC(F30):DG(G47) DC(F31):DG(G46) DA(F32):DT(G45) DC(F33):DG(G44) DT(F34):DA(G43) DG(F35):DC(G42) DC(F36):DG(G41) DA(F37):DT(G40) DA(F38):DT(G39) chainA ( 10) HIS328 0 0 1 7 14 10 0 0 0 0 0 0 0 0 0 0 0 ( 11) ASN329 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 ( 13) ILE331 0 2 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 14) GLU332 0 0 0 4 11 15 2 0 0 0 0 0 0 0 0 0 0 ( 17) TYR335 0 0 0 5 7 0 0 0 0 0 0 0 0 0 0 0 0 ( 18) ARG336 0 0 0 0 0 1 7 13 0 0 0 0 0 0 0 0 0 chainB ( 6) ARG325 0 0 0 0 0 0 0 0 8 4 0 0 0 0 0 0 0 ( 9) HIS328 0 0 0 0 0 0 0 0 0 2 10 11 4 0 0 0 0 ( 10) ASN329 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 12) ILE331 0 0 0 0 0 0 0 0 0 0 1 2 1 0 0 0 0 ( 13) GLU332 0 0 0 0 0 0 0 3 11 8 3 0 0 0 0 0 0 ( 16) TYR335 0 0 0 0 0 0 0 0 0 8 6 0 0 0 0 0 0 ( 17) ARG336 0 0 0 0 0 0 9 2 0 0 0 0 0 0 0 0 0 prot.sequence qsrgekrtaHNaIEkrYRssindkiielkdlvvgteaklnksavlrkaidyirflqhsnqklkqenlslrtavhkskslk/srgekRtaHNaIEkrYRssindkiielkdlvvgteaklnksavlrkaidyirflqhsnqklkqenlslrtavhks >1am9_CD: title=HUMAN SREBP-1A BOUND TO LDL RECEPTOR PROMOTER organism=Homo sapiens DNA sequence DA(H60):DT(E17) DG(H61):DC(E16) DA(H62):DT(E15) DT(H63):DA(E14) DC(H64):DG(E13) DA(H65):DT(E12) DC(H66):DG(E11) DC(H67):DG(E10) DC(H68):DG(E9) DC(H69):DG(E8) DA(H70):DT(E7) DC(H71):DG(E6) DT(H72):DA(E5) DG(H73):DC(E4) DC(H74):DG(E3) DA(H75):DT(E2) DA(H76):DT(E1) chainC ( 10) HIS328 0 0 0 7 16 8 0 0 0 0 0 0 0 0 0 0 0 ( 11) ASN329 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 ( 13) ILE331 0 2 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 14) GLU332 0 0 0 4 11 14 2 0 0 0 0 0 0 0 0 0 0 ( 17) TYR335 0 0 0 3 7 0 0 0 0 0 0 0 0 0 0 0 0 ( 18) ARG336 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 0 chainD ( 7) ARG325 0 0 0 0 0 0 0 0 8 4 0 0 0 0 0 0 0 ( 10) HIS328 0 0 0 0 0 0 0 0 0 2 11 11 4 0 0 0 0 ( 11) ASN329 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 13) ILE331 0 0 0 0 0 0 0 0 0 0 1 2 1 0 0 0 0 ( 14) GLU332 0 0 0 0 0 0 0 2 11 8 3 0 0 0 0 0 0 ( 17) TYR335 0 0 0 0 0 0 0 0 0 9 9 0 0 0 0 0 0 ( 18) ARG336 0 0 0 0 0 0 9 1 0 0 0 0 0 0 0 0 0 prot.sequence qsrgekrtaHNaIEkrYRssindkiielkdlvvgteaklnksavlrkaidyirflqhsnqklkqenlslrtavhkskslkdl/qsrgekRtaHNaIEkrYRssindkiielkdlvvgteaklnksavlrkaidyirflqhsnqklkqenlslrtavhks >1an2_A:HLH,_helix-loop-helix_DNA-binding_domain; title=RECOGNITION BY MAX OF ITS COGNATE DNA THROUGH A DIMERIC B/HLH/Z DOMAIN organism=Mus musculus DNA sequence DG(B1) DT(B2) DG(B3) DT(B4) DA(B5) DG(B6) DG(B7) DT(B8) DC(B9) DA(B10) DC(B11) DG(B12) DT(B13) DG(B14) DA(B15) DC(B16) DC(B17) DT(B18) DA(B19) DC(B20) DA(B21) DC(B22) chainA ( 7) HIS28 0 0 0 0 0 0 0 0 0 0 0 0 8 3 0 0 0 0 0 0 0 0 ( 8) ASN29 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 ( 11) GLU32 0 0 0 0 0 0 0 0 0 0 0 0 10 0 0 0 0 0 0 0 0 0 ( 15) ARG36 0 0 0 0 0 0 0 0 0 0 11 8 1 0 0 0 0 0 0 0 0 0 prot.sequence adkrahHNalErkrRdhikdsfhslrdsvpslqgekasraqildkateyiqymrrknhthqqdiddlkrqnalleqqvralekars >1an4_AB: title=STRUCTURE AND FUNCTION OF THE B/HLH/Z DOMAIN OF USF organism=Homo sapiens DNA sequence DA(C302):DT(D342) DC(C303):DG(D341) DC(C304):DG(D340) DC(C305):DG(D339) DG(C306):DC(D338) DG(C307):DC(D337) DT(C308):DA(D336) DC(C309):DG(D335) DA(C310):DT(D334) DC(C311):DG(D333) DG(C312):DC(D332) DT(C313):DA(D331) DG(C314):DC(D330) DG(C315):DC(D329) DC(C316):DG(D328) DC(C317):DG(D327) DT(C318):DA(D326) DA(C319):DT(D325) DC(C320):DG(D324) DA(C321):DT(D323) chainA ( 8) GLN203 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 12) VAL207 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 13) GLU208 0 0 0 0 0 0 8 9 5 0 0 0 0 0 0 0 0 0 0 0 ( 16) ARG211 0 0 0 0 0 0 3 14 0 0 0 0 0 0 0 0 0 0 0 0 ( 17) ARG212 0 0 0 0 0 0 0 0 6 10 0 0 0 0 0 0 0 0 0 0 ( 43) GLN238 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 chainB ( 5) ARG200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 7 3 0 0 ( 9) HIS204 0 0 0 0 0 0 0 0 0 0 0 2 2 2 0 0 0 0 0 0 ( 13) GLU208 0 0 0 0 0 0 0 0 0 0 0 6 2 0 0 0 0 0 0 0 ( 16) ARG211 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 ( 17) ARG212 0 0 0 0 0 0 0 0 0 3 7 3 0 0 0 0 0 0 0 0 prot.sequence mdekrraQhneVErrRRdkinnwivqlskiipdssmestksgQskggilskasdyiqelrqsnhr/mdekRraqHnevErrRRdkinnwivqlskiipdssmestksgqskggilskasdyiqelrqsnhr >1aoi_ABCDEFGH:Histone-fold;lambda_repressor-like_DNA-binding_domains;p53-like_transcription_factors;Nucleic_acid-binding_proteins;P-loop_containing_nucleoside_triphosphate_hydrolases; title=COMPLEX BETWEEN NUCLEOSOME CORE PARTICLE (H3,H4,H2A,H2B) AND 146 BP LONG DNA FRAGMENT organism=XENOPUS LAEVIS DNA sequence DA(J147):DT(I146) DT(J148):DA(I145) DC(J149):DG(I144) DA(J150):DT(I143) DA(J151):DT(I142) DT(J152):DA(I141) DA(J153):DT(I140) DT(J154):DA(I139) DC(J155):DG(I138) DC(J156):DG(I137) DA(J157):DT(I136) DC(J158):DG(I135) DC(J159):DG(I134) DT(J160):DA(I133) DG(J161):DC(I132) DC(J162):DG(I131) DA(J163):DT(I130) DG(J164):DC(I129) DA(J165):DT(I128) DT(J166):DA(I127) DT(J167):DA(I126) DC(J168):DG(I125) DT(J169):DA(I124) DA(J170):DT(I123) DC(J171):DG(I122) DC(J172):DG(I121) DA(J173):DT(I120) DA(J174):DT(I119) DA(J175):DT(I118) DA(J176):DT(I117) DG(J177):DC(I116) DT(J178):DA(I115) DG(J179):DC(I114) DT(J180):DA(I113) DA(J181):DT(I112) DT(J182):DA(I111) DT(J183):DA(I110) DT(J184):DA(I109) DG(J185):DC(I108) DG(J186):DC(I107) DA(J187):DT(I106) DA(J188):DT(I105) DA(J189):DT(I104) DC(J190):DG(I103) DT(J191):DA(I102) DG(J192):DC(I101) DC(J193):DG(I100) DT(J194):DA(I99) DC(J195):DG(I98) DC(J196):DG(I97) DA(J197):DT(I96) DT(J198):DA(I95) DC(J199):DG(I94) DA(J200):DT(I93) DA(J201):DT(I92) DA(J202):DT(I91) DA(J203):DT(I90) DG(J204):DC(I89) DG(J205):DC(I88) DC(J206):DG(I87) DA(J207):DT(I86) DT(J208):DA(I85) DG(J209):DC(I84) DT(J210):DA(I83) DT(J211):DA(I82) DC(J212):DG(I81) DA(J213):DT(I80) DG(J214):DC(I79) DC(J215):DG(I78) DT(J216):DA(I77) DG(J217):DC(I76) DA(J218):DT(I75) DA(J219):DT(I74) DT(J220):DA(I73) DT(J221):DA(I72) DC(J222):DG(I71) DA(J223):DT(I70) DG(J224):DC(I69) DC(J225):DG(I68) DT(J226):DA(I67) DG(J227):DC(I66) DA(J228):DT(I65) DA(J229):DT(I64) DC(J230):DG(I63) DA(J231):DT(I62) DT(J232):DA(I61) DG(J233):DC(I60) DC(J234):DG(I59) DC(J235):DG(I58) DT(J236):DA(I57) DT(J237):DA(I56) DT(J238):DA(I55) DT(J239):DA(I54) DG(J240):DC(I53) DA(J241):DT(I52) DT(J242):DA(I51) DG(J243):DC(I50) DG(J244):DC(I49) DA(J245):DT(I48) DG(J246):DC(I47) DC(J247):DG(I46) DA(J248):DT(I45) DG(J249):DC(I44) DT(J250):DA(I43) DT(J251):DA(I42) DT(J252):DA(I41) DC(J253):DG(I40) DC(J254):DG(I39) DA(J255):DT(I38) DA(J256):DT(I37) DA(J257):DT(I36) DT(J258):DA(I35) DA(J259):DT(I34) DC(J260):DG(I33) DA(J261):DT(I32) DC(J262):DG(I31) DT(J263):DA(I30) DT(J264):DA(I29) DT(J265):DA(I28) DT(J266):DA(I27) DG(J267):DC(I26) DG(J268):DC(I25) DT(J269):DA(I24) DA(J270):DT(I23) DG(J271):DC(I22) DA(J272):DT(I21) DA(J273):DT(I20) DT(J274):DA(I19) DC(J275):DG(I18) DT(J276):DA(I17) DG(J277):DC(I16) DC(J278):DG(I15) DA(J279):DT(I14) DG(J280):DC(I13) DG(J281):DC(I12) DT(J282):DA(I11) DG(J283):DC(I10) DG(J284):DC(I9) DA(J285):DT(I8) DT(J286):DA(I7) DA(J287):DT(I6) DT(J288):DA(I5) DT(J289):DA(I4) DG(J290):DC(I3) DA(J291):DT(I2) DT(J292):DA(I1) chainA ( 3) ARG40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 4) TYR41 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) LEU65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) ARG83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 26) ARG45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainC ( 39) ARG42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 74) ARG77 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainD ( 4) ARG27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 5) LYS28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainE ( 21) ARG40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 22) TYR41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 46) LEU65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 64) ARG83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainF ( 30) ARG45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainG ( 31) ARG42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainH ( 5) LYS28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence phRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera/kvlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/gkqggktrakaktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktRiiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpk/kkrRKtrkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak/latkaarksapatggvkkphRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera/krhrkvlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/akaktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk/kkrrKtrkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak >1apl_CD: title=CRYSTAL STRUCTURE OF A MAT-ALPHA2 HOMEODOMAIN-OPERATOR COMPLEX SUGGESTS A GENERAL MODEL FOR HOMEODOMAIN-DNA INTERACTIONS organism=Saccharomyces cerevisiae DNA sequence DC(A2):DG(B42) DA(A3):DT(B41) DT(A4):DA(B40) DG(A5):DC(B39) DT(A6):DA(B38) DA(A7):DT(B37) DA(A8):DT(B36) DT(A9):DA(B35) DT(A10):DA(B34) DC(A11):DG(B33) DA(A12):DT(B32) DT(A13):DA(B31) DT(A14):DA(B30) DT(A15):DA(B29) DA(A16):DT(B28) DC(A17):DG(B27) DA(A18):DT(B26) DC(A19):DG(B25) DG(A20):DC(B24) DC(A21):DG(B23) chainC ( 1) TYR131 0 0 0 0 0 0 0 0 0 0 0 0 0 3 2 0 0 0 0 0 ( 5) ARG135 0 0 0 0 0 0 0 0 0 0 6 8 2 0 0 0 0 0 0 0 ( 48) ASN178 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 ( 51) SER181 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 ( 52) ASN182 0 0 0 0 0 0 0 0 0 0 0 0 0 8 10 1 0 0 0 0 ( 55) ARG185 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 10 12 0 0 0 chainD ( 4) ARG135 0 0 0 0 0 0 1 10 6 0 0 0 0 0 0 0 0 0 0 0 ( 47) ASN178 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 50) SER181 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 51) ASN182 0 0 0 1 10 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 54) ARG185 0 0 11 8 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence YrghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvSNrrRkekt/rghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvSNrrRkekt >1apl_D:Homeodomain-like; title=CRYSTAL STRUCTURE OF A MAT-ALPHA2 HOMEODOMAIN-OPERATOR COMPLEX SUGGESTS A GENERAL MODEL FOR HOMEODOMAIN-DNA INTERACTIONS organism=Saccharomyces cerevisiae DNA sequence DC(A2):DG(B42) DA(A3):DT(B41) DT(A4):DA(B40) DG(A5):DC(B39) DT(A6):DA(B38) DA(A7):DT(B37) DA(A8):DT(B36) DT(A9):DA(B35) DT(A10):DA(B34) DC(A11):DG(B33) DA(A12):DT(B32) DT(A13):DA(B31) DT(A14):DA(B30) DT(A15):DA(B29) DA(A16):DT(B28) DC(A17):DG(B27) DA(A18):DT(B26) DC(A19):DG(B25) DG(A20):DC(B24) DC(A21):DG(B23) chainD ( 4) ARG135 0 0 0 0 0 0 1 10 6 0 0 0 0 0 0 0 0 0 0 0 ( 47) ASN178 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 50) SER181 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 51) ASN182 0 0 0 1 10 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 54) ARG185 0 0 11 8 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence rghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvSNrrRkekt >1au7_AB: title=PIT-1 MUTANT/DNA COMPLEX organism=Rattus norvegicus DNA sequence DC(D475):DG(C472) DT(D476):DA(C471) DT(D477):DA(C470) DC(D478):DG(C469) DC(D479):DG(C468) DT(D480):DA(C467) DC(D481):DG(C466) DA(D482):DT(C465) DT(D483):DA(C464) DG(D484):DC(C463) DT(D485):DA(C462) DA(D486):DT(C461) DT(D487):DA(C460) DA(D488):DT(C459) DT(D489):DA(C458) DA(D490):DT(C457) DC(D491):DG(C456) DA(D492):DT(C455) DT(D493):DA(C454) DG(D494):DC(C453) DA(D495):DT(C452) DG(D496):DC(C451) DG(D497):DC(C450) DA(D498):DT(C449) chainA ( 39) SER43 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 40) GLN44 0 0 0 0 0 0 0 0 0 0 0 0 10 19 0 0 0 0 0 0 0 0 0 0 ( 41) THR45 0 0 0 0 0 0 0 0 0 0 8 7 1 0 0 0 0 0 0 0 0 0 0 0 ( 44) CYS48 0 0 0 0 0 0 0 0 0 0 0 1 4 0 0 0 0 0 0 0 0 0 0 0 ( 45) ARG49 0 0 0 0 0 0 0 0 15 11 2 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 51) LEU55 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 55) ASN59 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 75) ARG105 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 11 10 0 0 0 0 0 0 0 (116) ARG146 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 (117) VAL147 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 0 0 (120) CYS150 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 (121) ASN151 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 9 0 0 0 0 0 0 (124) GLN154 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 7 6 0 0 0 0 (125) ARG155 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 chainB ( 23) GLN27 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 ( 39) SER43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 ( 40) GLN44 0 0 0 0 0 0 0 0 0 0 0 0 17 10 0 0 0 0 0 0 0 0 0 0 ( 41) THR45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 9 0 0 0 0 0 0 0 0 ( 44) CYS48 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 ( 45) ARG49 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 17 15 0 0 0 0 0 0 ( 51) LEU55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 ( 73) ARG105 0 0 0 0 0 0 0 0 0 0 9 7 0 0 0 0 0 0 0 0 0 0 0 0 (114) ARG146 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (115) VAL147 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (118) CYS150 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (119) ASN151 0 0 0 0 0 0 0 0 10 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (122) GLN154 0 0 0 0 0 0 9 10 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence gmraleqfanefkvrriklgytqtnvgealaavhgsefSQTtiCRfenlqLsfkNacklkailskwleeaeqkrRttisiaakdalerhfgehskpssqeimrmaeelnlekevvRVwfCNrrQRekrvk/gmraleqfanefkvrriklgytQtnvgealaavhgsefSQTtiCRfenlqLsfknacklkailskwleeakrRttisiaakdalerhfgehskpssqeimrmaeelnlekevvRVwfCNrrQrekrvk >1az0_A:Restriction_endonuclease-like; title=ECORV ENDONUCLEASE/DNA COMPLEX organism=ESCHERICHIA COLI DNA sequence DA(C902):DT(D811) DA(C903):DT(D810) DG(C904):DC(D809) DA(C905):DT(D808) DT(C906):DA(D807) DA(C907):DT(D806) DT(C908):DA(D805) DC(C909):DG(D804) DT(C910):DA(D803) DT(C911):DA(D802) chainA (103) LYS104 0 0 0 0 0 0 0 0 1 0 (105) THR106 0 0 0 0 0 0 9 0 0 0 (175) SER183 0 0 0 0 0 0 7 3 0 0 (177) ASN185 0 0 0 0 0 0 11 16 0 0 (178) THR186 0 0 0 0 5 4 8 0 0 0 (180) ASN188 0 0 0 0 0 0 4 0 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqnhypdftlykpsepnkkiaidikttytnkenekiKfTlggytsfirnntknivypfdqyiahwiigyvytrvktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk >1az0_AB: title=ECORV ENDONUCLEASE/DNA COMPLEX organism=ESCHERICHIA COLI DNA sequence DA(C902):DT(D811) DA(C903):DT(D810) DG(C904):DC(D809) DA(C905):DT(D808) DT(C906):DA(D807) DA(C907):DT(D806) DT(C908):DA(D805) DC(C909):DG(D804) DT(C910):DA(D803) DT(C911):DA(D802) chainA (103) LYS104 0 0 0 0 0 0 0 0 1 0 (105) THR106 0 0 0 0 0 0 9 0 0 0 (175) SER183 0 0 0 0 0 0 7 3 0 0 (177) ASN185 0 0 0 0 0 0 11 16 0 0 (178) THR186 0 0 0 0 5 4 8 0 0 0 (180) ASN188 0 0 0 0 0 0 4 0 0 0 chainB ( 65) ASN70 0 0 0 0 0 0 4 4 0 0 ( 96) THR106 0 0 0 9 0 0 0 0 0 0 (167) SER183 0 0 4 7 0 0 0 0 0 0 (169) ASN185 0 0 18 11 0 0 0 0 0 0 (170) THR186 0 0 0 8 3 5 0 0 0 0 (172) ASN188 0 0 0 4 0 0 0 0 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqnhypdftlykpsepnkkiaidikttytnkenekiKfTlggytsfirnntknivypfdqyiahwiigyvytrvktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk/slrsdlinalydedvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytnikfTlggytsfirnntknivypfdqyiahwiigyvytrvslktynielneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk >1azp_A:Chromo_domain-like; title=HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D BOUND WITH KINKED DNA DUPLEX organism=SULFOLOBUS ACIDOCALDARIUS DNA sequence DG(B101):DC(C116) DC(B102):DG(C115) DG(B103):DC(C114) DA(B104):DT(C113) DT(B105):DA(C112) DC(B106):DG(C111) DG(B107):DC(C110) DC(B108):DG(C109) chainA ( 8) TYR8 0 0 0 1 0 0 0 0 ( 24) TRP24 0 0 10 2 0 0 0 0 ( 26) VAL26 0 7 7 0 0 0 0 0 ( 29) MET29 0 12 13 0 0 0 0 0 ( 31) SER31 0 0 4 0 0 0 0 0 ( 42) ARG42 0 0 0 0 7 8 0 0 prot.sequence mvkvkfkYkgeekevdtskikkvWrVgkMvSftyddngktgRgavsekdapkelldmlaraerekk >1azq_A:Chromo_domain-like; title=HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D BOUND WITH KINKED DNA DUPLEX organism=SULFOLOBUS ACIDOCALDARIUS DNA sequence DG(C109):DC(B108) DT(C110):DA(B107) DA(C111):DT(B106) DA(C112):DT(B105) DT(C113):DA(B104) DT(C114):DA(B103) DA(C115):DT(B102) DC(C116):DG(B101) chainA ( 24) TRP24 0 0 0 4 7 0 0 0 ( 26) VAL26 0 0 0 0 14 9 0 0 ( 29) MET29 0 0 0 0 7 15 0 0 ( 31) SER31 0 0 0 0 2 0 0 0 ( 42) ARG42 0 7 7 1 0 0 0 0 ( 44) ALA44 0 0 0 0 1 0 0 0 prot.sequence mvkvkfkYkgeekevdtskikkvWrVgkMvSftyddngktgRgAvsekdapkelldmlaraerekk >1b01_AB: title=TRANSCRIPTIONAL REPRESSOR COPG/DNA COMPLEX organism=Streptococcus agalactiae DNA sequence DA(F111):DT(E110) DG(F112):DC(E109) DT(F113):DA(E108) DG(F114):DC(E107) DC(F115):DG(E106) DA(F116):DT(E105) DC(F117):DG(E104) DG(F118):DC(E103) DG(F119):DC(E102) chainA ( 4) ARG4 0 0 15 8 13 3 0 0 0 ( 6) THR6 0 0 0 0 1 9 1 0 0 chainB ( 4) ARG4 0 0 0 0 0 5 9 15 0 ( 6) THR6 0 0 6 6 5 1 0 0 0 ( 8) THR8 0 6 3 0 0 0 0 0 0 prot.sequence mkkRlTitlsesvlenlekmaremglsksamisvalenykkgq/mkkRlTiTlsesvlenlekmaremglsksamisvalenykkgq >1b3t_A:Viral_DNA-binding_domain; title=EBNA-1 NUCLEAR PROTEIN/DNA COMPLEX organism=Human herpesvirus 4 DNA sequence DG(D201):DC(C118) DG(D202):DC(C117) DG(D203):DC(C116) DA(D204):DT(C115) DA(D205):DT(C114) DG(D206):DC(C113) DC(D207):DG(C112) DA(D208):DT(C111) DT(D209):DA(C110) DA(D210):DT(C109) DT(D211):DA(C108) DG(D212):DC(C107) DC(D213):DG(C106) DT(D214):DA(C105) DT(D215):DA(C104) DC(D216):DG(C103) DC(D217):DG(C102) DC(D218):DG(C101) chainA ( 1) LYS461 0 0 6 12 4 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 4) TRP464 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 ( 5) PHE465 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 9) ARG469 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 ( 15) ASN475 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 17) LYS477 11 10 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 18) PHE478 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 54) LYS514 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 ( 55) THR515 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 58) TYR518 0 0 0 0 2 5 0 0 0 0 0 0 0 0 0 0 0 0 ( 59) ASN519 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 62) ARG522 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence KggWFgkhRgqggsNpKFeniaeglrallarshverttdegtwvagvfvyggsKTslYNlrRgtalaipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnirvtvcsfddgvdlp >1b3t_AB:Viral_DNA-binding_domain; title=EBNA-1 NUCLEAR PROTEIN/DNA COMPLEX organism=Human herpesvirus 4 DNA sequence DG(D201):DC(C118) DG(D202):DC(C117) DG(D203):DC(C116) DA(D204):DT(C115) DA(D205):DT(C114) DG(D206):DC(C113) DC(D207):DG(C112) DA(D208):DT(C111) DT(D209):DA(C110) DA(D210):DT(C109) DT(D211):DA(C108) DG(D212):DC(C107) DC(D213):DG(C106) DT(D214):DA(C105) DT(D215):DA(C104) DC(D216):DG(C103) DC(D217):DG(C102) DC(D218):DG(C101) chainA ( 1) LYS461 0 0 6 12 4 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 4) TRP464 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 ( 5) PHE465 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 9) ARG469 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 ( 15) ASN475 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 17) LYS477 11 10 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 18) PHE478 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 54) LYS514 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 ( 55) THR515 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 58) TYR518 0 0 0 0 2 5 0 0 0 0 0 0 0 0 0 0 0 0 ( 59) ASN519 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 62) ARG522 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 1) LYS461 0 0 0 0 0 0 0 0 0 0 0 0 0 2 10 2 0 0 ( 4) TRP464 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 ( 5) PHE465 0 0 0 0 0 0 0 0 0 0 0 0 2 4 0 0 0 0 ( 9) ARG469 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 ( 17) LYS477 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 10 7 ( 18) PHE478 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 ( 54) LYS514 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 ( 55) THR515 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 ( 58) TYR518 0 0 0 0 0 0 0 0 0 0 0 0 5 2 0 0 0 0 ( 59) ASN519 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 ( 62) ARG522 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 prot.sequence KggWFgkhRgqggsNpKFeniaeglrallarshverttdegtwvagvfvyggsKTslYNlrRgtalaipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnirvtvcsfddgvdlp/KggWFgkhRgqggsnpKFeniaeglrallarshverttdegtwvagvfvyggsKTslYNlrRgtalaipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnirvtvcsfddgvdlp >1b72_AB: title=PBX1, HOMEOBOX PROTEIN HOX-B1/DNA TERNARY COMPLEX organism=HOMO SAPIENS DNA sequence DC(D2):DG(E40) DT(D3):DA(E39) DC(D4):DG(E38) DT(D5):DA(E37) DA(D6):DT(E36) DT(D7):DA(E35) DG(D8):DC(E34) DA(D9):DT(E33) DT(D10):DA(E32) DT(D11):DA(E31) DG(D12):DC(E30) DA(D13):DT(E29) DT(D14):DA(E28) DC(D15):DG(E27) DG(D16):DC(E26) DG(D17):DC(E25) DC(D18):DG(E24) DT(D19):DA(E23) DG(D20):DC(E22) chainA ( 11) ARG207 0 0 0 0 0 0 0 0 0 5 7 0 0 0 0 0 0 0 0 ( 53) ILE249 0 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 0 0 0 ( 56) GLN252 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 2 0 0 0 ( 57) ASN253 0 0 0 0 0 0 0 0 0 0 6 10 0 0 0 0 0 0 0 ( 60) MET256 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 chainB ( 3) ARG237 0 0 0 1 9 6 9 0 0 0 0 0 0 0 0 0 0 0 0 ( 48) ASN282 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 ( 52) ASN286 0 0 0 0 0 0 4 11 2 0 0 0 0 0 0 0 0 0 0 ( 55) ILE289 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 ( 56) ARG290 0 0 0 0 0 21 11 4 0 0 0 0 0 0 0 0 0 0 0 prot.sequence artfdwmkvlRtnfttrqltelekefhfnkylsrarrveiaatlelnetqvkIwfQNrrMkqkkrere/rkRrnfnkqateilneyfyshlsnpypseeakeelakkcgitvsqvsNwfgNkrIRykknigkfqeeaniyaa >1b8i_A:Homeodomain-like; title=STRUCTURE OF THE HOMEOTIC UBX/EXD/DNA TERNARY COMPLEX organism=DROSOPHILA MELANOGASTER DNA sequence DG(D18):DC(C15) DT(D19):DA(C14) DG(D20):DC(C13) DA(D21):DT(C12) DT(D22):DA(C11) DT(D23):DA(C10) DT(D24):DA(C9) DA(D25):DT(C8) DT(D26):DA(C7) DG(D27):DC(C6) DG(D28):DC(C5) DC(D29):DG(C4) DG(D30):DC(C3) chainA ( 7) ARG105 0 0 0 0 7 11 6 0 0 0 0 0 0 ( 49) ILE147 0 0 0 0 0 0 0 2 4 0 0 0 0 ( 52) GLN150 0 0 0 0 0 0 0 0 0 3 10 2 0 ( 53) ASN151 0 0 0 0 0 0 8 10 0 0 0 0 0 ( 56) MET154 0 0 0 0 0 0 0 0 0 4 0 0 0 prot.sequence fypwmaRqtytryqtlelekefhtnhyltrrrriemahalslterqikIwfQNrrMklkkei >1b8i_AB:Homeodomain-like; title=STRUCTURE OF THE HOMEOTIC UBX/EXD/DNA TERNARY COMPLEX organism=DROSOPHILA MELANOGASTER DNA sequence DC(C3):DG(D30) DG(C4):DC(D29) DC(C5):DG(D28) DC(C6):DG(D27) DA(C7):DT(D26) DT(C8):DA(D25) DA(C9):DT(D24) DA(C10):DT(D23) DA(C11):DT(D22) DT(C12):DA(D21) DC(C13):DG(D20) DA(C14):DT(D19) DC(C15):DG(D18) chainA ( 7) ARG105 0 0 0 0 0 0 6 11 7 0 0 0 0 ( 49) ILE147 0 0 0 0 4 2 0 0 0 0 0 0 0 ( 52) GLN150 0 2 10 3 0 0 0 0 0 0 0 0 0 ( 53) ASN151 0 0 0 0 0 10 8 0 0 0 0 0 0 ( 56) MET154 0 0 0 4 0 0 0 0 0 0 0 0 0 chainB ( 1) ARG205 0 0 0 0 0 0 0 0 0 0 11 11 8 ( 46) ASN250 0 0 0 0 0 0 0 0 3 1 0 0 0 ( 50) ASN254 0 0 0 0 0 0 0 0 1 11 5 0 0 ( 54) ARG258 0 0 0 0 0 0 0 0 0 4 14 15 0 prot.sequence fypwmaRqtytryqtlelekefhtnhyltrrrriemahalslterqikIwfQNrrMklkkei/RrnfskqaseilneyfyshlsnpypseeakeelarkcgitvsqvsNwfgNkriRykkn >1b94_A:Restriction_endonuclease-like; title=RESTRICTION ENDONUCLEASE ECORV WITH CALCIUM organism=Escherichia coli DNA sequence DA(D2):DT(C11) DA(D3):DT(C10) DG(D4):DC(C9) DA(D5):DT(C8) DT(D6):DA(C7) DA(D7):DT(C6) DT(D8):DA(C5) DC(D9):DG(C4) DT(D10):DA(C3) DT(D11):DA(C2) chainA ( 69) ASN70 0 0 0 0 0 3 7 5 0 0 (103) LYS104 0 2 0 0 0 0 0 0 0 0 (105) THR106 0 0 0 9 0 0 0 0 0 0 (182) SER183 0 0 3 8 0 0 0 0 0 0 (184) ASN185 0 0 18 10 0 0 0 0 0 0 (185) THR186 0 0 0 8 3 5 0 0 0 0 (187) ASN188 0 0 0 4 0 0 0 0 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytnkenekiKfTlggytsfirnntknivypfdqyiahwiigyvytrvatrksslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk >1b94_AB: title=RESTRICTION ENDONUCLEASE ECORV WITH CALCIUM organism=Escherichia coli DNA sequence DA(D2):DT(C11) DA(D3):DT(C10) DG(D4):DC(C9) DA(D5):DT(C8) DT(D6):DA(C7) DA(D7):DT(C6) DT(D8):DA(C5) DC(D9):DG(C4) DT(D10):DA(C3) DT(D11):DA(C2) chainA ( 69) ASN70 0 0 0 0 0 3 7 5 0 0 (103) LYS104 0 2 0 0 0 0 0 0 0 0 (105) THR106 0 0 0 9 0 0 0 0 0 0 (182) SER183 0 0 3 8 0 0 0 0 0 0 (184) ASN185 0 0 18 10 0 0 0 0 0 0 (185) THR186 0 0 0 8 3 5 0 0 0 0 (187) ASN188 0 0 0 4 0 0 0 0 0 0 chainB ( 37) LYS38 0 0 0 0 1 0 0 0 0 0 ( 69) ASN70 0 0 4 4 1 0 0 0 0 0 (103) LYS104 0 0 0 0 0 0 0 0 1 0 (105) THR106 0 0 0 0 0 0 8 0 0 0 (182) SER183 0 0 0 0 0 0 8 4 0 0 (184) ASN185 0 0 0 0 0 0 11 18 0 0 (185) THR186 0 0 0 0 5 3 9 0 0 0 (187) ASN188 0 0 0 0 0 0 4 0 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytnkenekiKfTlggytsfirnntknivypfdqyiahwiigyvytrvatrksslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk/slrsdlinalydenqkydvcgiisaegkiyplgsdtKvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytnkenekiKfTlggytsfirnntknivypfdqyiahwiigyvytrvatrksslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk >1b95_AB: title=ANALYSIS OF A MUTATIONAL HOT-SPOT IN THE ECORV RESTRICTION ENDONUCLEASE: A CATALYTIC ROLE FOR A MAIN CHAIN CARBONYL GROUP organism=Escherichia coli DNA sequence DA(C2):DT(D11) DA(C3):DT(D10) DG(C4):DC(D9) DA(C5):DT(D8) DT(C6):DA(D7) DA(C7):DT(D6) DT(C8):DA(D5) DC(C9):DG(D4) DT(C10):DA(D3) DT(C11):DA(D2) chainA ( 69) ASN70 0 0 6 7 3 0 0 0 0 0 (103) LYS104 0 0 0 0 0 0 0 0 1 0 (105) THR106 0 0 0 0 0 0 9 1 0 0 (182) SER183 0 0 0 0 0 0 8 5 0 0 (184) ASN185 0 0 0 0 0 0 10 18 0 0 (185) THR186 0 0 0 0 5 3 8 0 0 0 (187) ASN188 0 0 0 0 0 0 4 0 0 0 chainB ( 37) LYS38 0 0 0 0 0 1 0 0 0 0 ( 69) ASN70 0 0 0 0 0 0 3 3 0 0 (103) LYS104 0 1 0 0 0 0 0 0 0 0 (105) THR106 0 0 1 9 0 0 0 0 0 0 (182) SER183 0 0 4 7 0 0 0 0 0 0 (184) ASN185 0 0 18 12 0 0 0 0 0 0 (185) THR186 0 0 0 9 3 5 0 0 0 0 (187) ASN188 0 0 0 4 0 0 0 0 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytnkenekiKfTlggytsfirnntknivypfdqyiahwiigyvytrvatrksslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk/slrsdlinalydenqkydvcgiisaegkiyplgsdtKvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytnkenekiKfTlggytsfirnntknivypfdqyiahwiigyvytrvatrksslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk >1b95_B:Restriction_endonuclease-like; title=ANALYSIS OF A MUTATIONAL HOT-SPOT IN THE ECORV RESTRICTION ENDONUCLEASE: A CATALYTIC ROLE FOR A MAIN CHAIN CARBONYL GROUP organism=Escherichia coli DNA sequence DA(C2):DT(D11) DA(C3):DT(D10) DG(C4):DC(D9) DA(C5):DT(D8) DT(C6):DA(D7) DA(C7):DT(D6) DT(C8):DA(D5) DC(C9):DG(D4) DT(C10):DA(D3) DT(C11):DA(D2) chainB ( 37) LYS38 0 0 0 0 0 1 0 0 0 0 ( 69) ASN70 0 0 0 0 0 0 3 3 0 0 (103) LYS104 0 1 0 0 0 0 0 0 0 0 (105) THR106 0 0 1 9 0 0 0 0 0 0 (182) SER183 0 0 4 7 0 0 0 0 0 0 (184) ASN185 0 0 18 12 0 0 0 0 0 0 (185) THR186 0 0 0 9 3 5 0 0 0 0 (187) ASN188 0 0 0 4 0 0 0 0 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtKvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytnkenekiKfTlggytsfirnntknivypfdqyiahwiigyvytrvatrksslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk >1b96_A:Restriction_endonuclease-like; title=ANALYSIS OF A MUTATIONAL HOT-SPOT IN THE ECORV RESTRICTION ENDONUCLEASE: A CATALYTIC ROLE FOR A MAIN CHAIN CARBONYL GROUP organism=Escherichia coli DNA sequence DA(D2):DT(C11) DA(D3):DT(C10) DG(D4):DC(C9) DA(D5):DT(C8) DT(D6):DA(C7) DA(D7):DT(C6) DT(D8):DA(C5) DC(D9):DG(C4) DT(D10):DA(C3) DT(D11):DA(C2) chainA ( 69) ASN70 0 0 0 0 0 1 7 5 0 0 (103) LYS104 0 1 0 0 0 0 0 0 0 0 (105) THR106 0 0 1 11 0 0 0 0 0 0 (182) SER183 0 0 5 8 0 0 0 0 0 0 (184) ASN185 0 0 16 10 0 0 0 0 0 0 (185) THR186 0 0 0 8 3 6 0 0 0 0 (187) ASN188 0 0 0 4 0 0 0 0 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqeNhypdftlykpsepnkkiaidikttytnkenekiKfTlggytsfirnntknivypfdqyiahwiigyvytrvatrksslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk >1b96_AB: title=ANALYSIS OF A MUTATIONAL HOT-SPOT IN THE ECORV RESTRICTION ENDONUCLEASE: A CATALYTIC ROLE FOR A MAIN CHAIN CARBONYL GROUP organism=Escherichia coli DNA sequence DA(C2):DT(D11) DA(C3):DT(D10) DG(C4):DC(D9) DA(C5):DT(D8) DT(C6):DA(D7) DA(C7):DT(D6) DT(C8):DA(D5) DC(C9):DG(D4) DT(C10):DA(D3) DT(C11):DA(D2) chainA ( 69) ASN70 0 0 5 7 1 0 0 0 0 0 (103) LYS104 0 0 0 0 0 0 0 0 1 0 (105) THR106 0 0 0 0 0 0 11 1 0 0 (182) SER183 0 0 0 0 0 0 8 5 0 0 (184) ASN185 0 0 0 0 0 0 10 16 0 0 (185) THR186 0 0 0 0 6 3 8 0 0 0 (187) ASN188 0 0 0 0 0 0 4 0 0 0 chainB ( 69) ASN70 0 0 0 0 0 0 3 2 0 0 (103) LYS104 0 2 0 0 0 0 0 0 0 0 (105) THR106 0 0 0 8 0 0 0 0 0 0 (182) SER183 0 0 4 7 0 0 0 0 0 0 (184) ASN185 0 0 18 11 0 0 0 0 0 0 (185) THR186 0 0 0 8 4 6 0 0 0 0 (187) ASN188 0 0 0 4 0 0 0 0 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqeNhypdftlykpsepnkkiaidikttytnkenekiKfTlggytsfirnntknivypfdqyiahwiigyvytrvatrksslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk/slrsdlinalydenqkydvcgiisaegkiyplgsdtKvlstifelfsrpiinkiaekhgyiveepkqeNhypdftlykpsepnkkiaidikttytnkenekiKfTlggytsfirnntknivypfdqyiahwiigyvytrvatrksslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk >1b97_AB: title=ANALYSIS OF A MUTATIONAL HOT-SPOT IN THE ECORV RESTRICTION ENDONUCLEASE: A CATALYTIC ROLE FOR A MAIN CHAIN CARBONYL GROUP organism=Escherichia coli DNA sequence DA(C2):DT(D11) DA(C3):DT(D10) DG(C4):DC(D9) DA(C5):DT(D8) DT(C6):DA(D7) DA(C7):DT(D6) DT(C8):DA(D5) DC(C9):DG(D4) DT(C10):DA(D3) DT(C11):DA(D2) chainA ( 69) ASN70 0 0 1 3 4 0 0 0 0 0 (103) LYS104 0 0 0 0 0 0 0 0 1 0 (105) THR106 0 0 0 0 0 0 10 1 0 0 (182) SER183 0 0 0 0 0 0 7 4 0 0 (184) ASN185 0 0 0 0 0 0 10 16 0 0 (185) THR186 0 0 0 0 5 3 8 0 0 0 (187) ASN188 0 0 0 0 0 0 4 0 0 0 chainB ( 69) ASN70 0 0 0 0 0 0 2 3 0 0 (103) LYS104 0 2 0 0 0 0 0 0 0 0 (105) THR106 0 0 1 9 0 0 0 0 0 0 (182) SER183 0 0 2 7 0 0 0 0 0 0 (184) ASN185 0 0 16 10 0 0 0 0 0 0 (185) THR186 0 0 0 9 3 5 0 0 0 0 (187) ASN188 0 0 0 4 0 0 0 0 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqlNhypdftlykpsepnkkiaidikttytnkenekiKfTlggytsfirnntknivypfdqyiahwiigyvytrvatrksslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk/slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqlNhypdftlykpsepnkkiaidikttytnkenekiKfTlggytsfirnntknivypfdqyiahwiigyvytrvatrksslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk >1b97_B:Restriction_endonuclease-like; title=ANALYSIS OF A MUTATIONAL HOT-SPOT IN THE ECORV RESTRICTION ENDONUCLEASE: A CATALYTIC ROLE FOR A MAIN CHAIN CARBONYL GROUP organism=Escherichia coli DNA sequence DA(C2):DT(D11) DA(C3):DT(D10) DG(C4):DC(D9) DA(C5):DT(D8) DT(C6):DA(D7) DA(C7):DT(D6) DT(C8):DA(D5) DC(C9):DG(D4) DT(C10):DA(D3) DT(C11):DA(D2) chainB ( 69) ASN70 0 0 0 0 0 0 2 3 0 0 (103) LYS104 0 2 0 0 0 0 0 0 0 0 (105) THR106 0 0 1 9 0 0 0 0 0 0 (182) SER183 0 0 2 7 0 0 0 0 0 0 (184) ASN185 0 0 16 10 0 0 0 0 0 0 (185) THR186 0 0 0 9 3 5 0 0 0 0 (187) ASN188 0 0 0 4 0 0 0 0 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqlNhypdftlykpsepnkkiaidikttytnkenekiKfTlggytsfirnntknivypfdqyiahwiigyvytrvatrksslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk >1bbx_CD: title=NON-SPECIFIC PROTEIN-DNA INTERACTIONS IN THE SSO7D-DNA COMPLEX, NMR, 1 STRUCTURE organism=SULFOLOBUS SOLFATARICUS DNA sequence DC(A1):DG(B24) DT(A2):DA(B23) DA(A3):DT(B22) DG(A4):DC(B21) DC(A5):DG(B20) DG(A6):DC(B19) DC(A7):DG(B18) DG(A8):DC(B17) DC(A9):DG(B16) DT(A10):DA(B15) DA(A11):DT(B14) DG(A12):DC(B13) chainC ( 23) TRP23 0 0 0 4 1 0 0 0 0 0 0 0 ( 25) VAL25 0 0 0 0 9 6 0 0 0 0 0 0 ( 27) LYS27 0 0 0 0 9 6 0 0 0 0 0 0 ( 30) SER30 0 0 0 0 1 0 0 0 0 0 0 0 ( 42) ARG42 0 0 0 18 6 0 0 0 0 0 0 0 chainD ( 23) TRP23 0 0 0 0 0 0 0 1 4 0 0 0 ( 25) VAL25 0 0 0 0 0 0 6 9 0 0 0 0 ( 27) LYS27 0 0 0 0 0 0 6 9 0 0 0 0 ( 30) SER30 0 0 0 0 0 0 0 1 0 0 0 0 ( 42) ARG42 0 0 0 0 0 0 0 6 18 0 0 0 prot.sequence atvkfkykgeekqvdiskikkvWrVgKmiSftydegggktgRgavsekdapkellqmlekqkk/atvkfkykgeekqvdiskikkvWrVgKmiSftydegggktgRgavsekdapkellqmlekqkk >1bc7_C:"Winged_helix"_DNA-binding_domain; title=SERUM RESPONSE FACTOR ACCESSORY PROTEIN 1A (SAP-1)/DNA COMPLEX organism=Homo sapiens DNA sequence DG(A1):DC(B22) DA(A2):DT(B21) DC(A3):DG(B20) DA(A4):DT(B19) DG(A5):DC(B18) DG(A6):DC(B17) DA(A7):DT(B16) DT(A8):DA(B15) DG(A9):DC(B14) DT(A10):DA(B13) DG(A11):DC(B12) chainC ( 58) LYS58 0 0 0 0 0 0 5 0 0 0 0 ( 61) ARG61 0 0 0 0 24 20 8 0 0 0 0 ( 64) ARG64 0 0 2 10 14 0 0 0 0 0 0 ( 65) TYR65 0 0 0 0 0 0 4 6 11 0 0 prot.sequence mdsaitlwqfllqllqkpqnkhmicwtsndgqfkllqaeevarlwgirknkpnmnydKlsRalRYyyvkniikkvngqkfvykfvsypeilnm >1bdh_A:Periplasmic_binding_protein-like_I;lambda_repressor-like_DNA-binding_domains; title=PURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX organism=Escherichia coli DNA sequence DT(B699) DA(B700) DC(B701) DG(B702) DC(B703) DA(B704) DA(B705) DA(B706) DC(B707) DG(B708) DT(B709) DT(B710) DT(B711) DG(B712) DC(B713) DG(B714) DT(B715) chainA ( 12) SER14 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 14) THR16 0 0 0 3 5 1 0 0 0 0 0 0 0 0 0 0 0 ( 24) ARG26 0 0 24 12 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 52) LEU54 0 0 0 0 0 0 0 0 8 5 0 0 0 0 0 0 0 ( 53) ALA55 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 prot.sequence tikdvakranvStTtvshvinktRfvaeetrnavwaaikelhyspsavarsLAvnhtksigllatsseaayfaeiieavekncfqkgytlilgnawnnlekqraylsmmaqkrvdgllvmcseypepllamleeyrhipmvvmdwgeakadftdavidnafeggymagrylierghreigvipgplerntgagrlagfmkameeamikvpeswivqgdfepesgyramqqilsqphrptavfcggdimamgalcaademglrvpqdvsligydnvrnaryftpalttihqpkdslgetafnmlldrivnkreepqsievhprlierrsvadgpfrdyr >1bdi_A:Periplasmic_binding_protein-like_I;lambda_repressor-like_DNA-binding_domains; title=PURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX organism=ESCHERICHIA COLI DNA sequence DT(B699) DA(B700) DC(B701) DG(B702) DC(B703) DA(B704) DA(B705) DA(B706) DC(B707) DG(B708) DT(B709) DT(B710) DT(B711) DG(B712) DC(B713) DG(B714) DT(B715) chainA ( 12) SER14 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 14) THR16 0 0 0 1 5 3 0 0 0 0 0 0 0 0 0 0 0 ( 24) ARG26 0 0 23 11 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 52) LEU54 0 0 0 0 0 0 0 0 5 4 0 0 0 0 0 0 0 ( 53) LYS55 0 0 0 0 0 0 0 5 2 0 0 0 0 0 0 0 0 prot.sequence tikdvakranvStTtvshvinktRfvaeetrnavwaaikelhyspsavarsLKvnhtksigllatsseaayfaeiieavekncfqkgytlilgnawnnlekqraylsmmaqkrvdgllvmcseypepllamleeyrhipmvvmdwgeakadftdavidnafeggymagrylierghreigvipgplerntgagrlagfmkameeamikvpeswivqgdfepesgyramqqilsqphrptavfcggdimamgalcaademglrvpqdvsligydnvrnaryftpalttihqpkdslgetafnmlldrivnkreepqsievhprlierrsvadgpfrdyr >1bdt_ABCD: title=WILD TYPE GENE-REGULATING PROTEIN ARC/DNA COMPLEX organism=Enterobacteria phage P22 DNA sequence DA(E2):DT(F22) DT(E3):DA(F21) DA(E4):DT(F20) DG(E5):DC(F19) DT(E6):DA(F18) DA(E7):DT(F17) DG(E8):DC(F16) DA(E9):DT(F15) DG(E10):DC(F14) DT(E11):DA(F13) DG(E12):DC(F12) DC(E13):DG(F11) DT(E14):DA(F10) DT(E15):DA(F9) DC(E16):DG(F8) DT(E17):DA(F7) DA(E18):DT(F6) DT(E19):DA(F5) DC(E20):DG(F4) DA(E21):DT(F3) DT(E22):DA(F2) chainA ( 4) MET4 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 9) GLN9 0 0 0 3 8 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 11) ASN11 0 0 0 0 0 11 10 5 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 13) ARG13 0 0 0 0 0 4 5 14 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 4) MET4 0 0 0 0 0 0 0 2 3 0 0 0 0 0 0 0 0 0 0 0 0 ( 5) SER5 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 ( 9) GLN9 0 0 0 0 14 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 11) ASN11 0 0 0 0 9 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 13) ARG13 0 9 9 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainC ( 4) MET4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 ( 5) SER5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 ( 9) GLN9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 8 3 0 0 0 ( 11) ASN11 0 0 0 0 0 0 0 0 0 0 0 0 0 6 10 9 0 0 0 0 0 ( 13) ARG13 0 0 0 0 0 0 0 0 0 0 0 0 0 11 6 4 0 0 0 0 0 chainD ( 4) MET4 0 0 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 ( 5) SER5 0 0 0 0 0 0 0 0 0 0 0 4 2 0 0 0 0 0 0 0 0 ( 9) GLN9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 16 0 0 0 0 ( 11) ASN11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 12 1 0 0 0 ( 13) ARG13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 6 5 0 prot.sequence mkgMskmpQfNlRwprevldlvrkvaeengrsvnseiyqrvmesfkkegrig/mkgMSkmpQfNlRwprevldlvrkvaeengrsvnseiyqrvmesfkkegriga/mkgMSkmpQfNlRwprevldlvrkvaeengrsvnseiyqrvmesfkkegr/mkgMSkmpQfNlRwprevldlvrkvaeengrsvnseiyqrvmesfkkegr >1bdv_ABCD: title=ARC FV10 COCRYSTAL organism=Enterobacteria phage P22 DNA sequence DA(E2):DT(F22) DT(E3):DA(F21) DA(E4):DT(F20) DG(E5):DC(F19) DT(E6):DA(F18) DA(E7):DT(F17) DG(E8):DC(F16) DA(E9):DT(F15) DG(E10):DC(F14) DT(E11):DA(F13) DG(E12):DC(F12) DC(E13):DG(F11) DT(E14):DA(F10) DT(E15):DA(F9) DC(E16):DG(F8) DT(E17):DA(F7) DA(E18):DT(F6) DT(E19):DA(F5) DC(E20):DG(F4) DA(E21):DT(F3) DT(E22):DA(F2) chainA ( 3) GLN9 0 0 0 3 8 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 5) ASN11 0 0 0 0 2 12 9 6 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 7) ARG13 0 0 0 0 0 6 5 10 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 4) MET4 0 0 0 0 0 0 0 2 5 0 0 0 0 0 0 0 0 0 0 0 0 ( 5) SER5 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 ( 9) GLN9 0 0 0 0 14 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 11) ASN11 0 0 0 0 8 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 13) ARG13 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainC ( 3) GLN9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 7 0 0 0 0 ( 5) ASN11 0 0 0 0 0 0 0 0 0 0 0 0 0 3 10 12 0 0 0 0 0 ( 7) ARG13 0 0 0 0 0 0 0 0 0 0 0 0 1 8 4 4 0 0 0 0 0 chainD ( 4) MET4 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 ( 5) SER5 0 0 0 0 0 0 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 ( 9) GLN9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 13 0 0 0 0 ( 11) ASN11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 11 1 0 0 0 ( 13) ARG13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 5 0 prot.sequence mpQvNlRwprevldlvrkvaeengrsvnseiyqrvmesfkkegrig/mkgMSkmpQvNlRwprevldlvrkvaeengrsvnseiyqrvmesfkkegriga/mpQvNlRwprevldlvrkvaeengrsvnseiyqrvmesfkkeg/mkgMSkmpQvNlRwprevldlvrkvaeengrsvnseiyqrvmesfkkegr >1bdv_D:Ribbon-helix-helix; title=ARC FV10 COCRYSTAL organism=Enterobacteria phage P22 DNA sequence DA(E2):DT(F22) DT(E3):DA(F21) DA(E4):DT(F20) DG(E5):DC(F19) DT(E6):DA(F18) DA(E7):DT(F17) DG(E8):DC(F16) DA(E9):DT(F15) DG(E10):DC(F14) DT(E11):DA(F13) DG(E12):DC(F12) DC(E13):DG(F11) DT(E14):DA(F10) DT(E15):DA(F9) DC(E16):DG(F8) DT(E17):DA(F7) DA(E18):DT(F6) DT(E19):DA(F5) DC(E20):DG(F4) DA(E21):DT(F3) DT(E22):DA(F2) chainD ( 4) MET4 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 ( 5) SER5 0 0 0 0 0 0 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 ( 9) GLN9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 13 0 0 0 0 ( 11) ASN11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 11 1 0 0 0 ( 13) ARG13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 5 0 prot.sequence mkgMSkmpQvNlRwprevldlvrkvaeengrsvnseiyqrvmesfkkegr >1bf4_A:Chromo_domain-like; title=CHROMOSOMAL DNA-BINDING PROTEIN SSO7D/D(GCGAACGC) COMPLEX organism=Sulfolobus acidocaldarius DNA sequence DG(B101):DC(C116) DC(B102):DG(C115) DG(B103):DC(C114) DT(B104):DA(C113) 5IU(B105):DA(C112) DC(B106):DG(C111) DG(B107):DC(C110) DC(B108):DG(C109) chainA ( 7) TYR8 0 0 0 1 0 0 0 0 ( 23) TRP24 0 0 12 4 0 0 0 0 ( 25) VAL26 0 6 9 0 0 0 0 0 ( 28) MET29 0 19 11 0 0 0 0 0 ( 30) SER31 0 0 4 0 0 0 0 0 ( 42) ARG43 0 0 0 0 9 8 0 0 ( 44) ALA45 0 0 1 0 0 0 0 0 prot.sequence atvkfkYKgeekevdiskikkvWrVgkMiSftydegggktgRgAvsekdapkellqmlekqkk >1bgb_A:Restriction_endonuclease-like; title=ECORV ENDONUCLEASE COMPLEX WITH 5'-CGGGATATCCC DNA organism=Escherichia coli DNA sequence DG(C802):DC(D911) DG(C803):DC(D910) DG(C804):DC(D909) DA(C805):DT(D908) DT(C806):DA(D907) DA(C807):DT(D906) DT(C808):DA(D905) DC(C809):DG(D904) DC(C810):DG(D903) DC(C811):DG(D902) chainA (105) THR106 0 0 1 9 0 0 0 0 0 0 (175) SER183 0 0 2 5 0 0 0 0 0 0 (177) ASN185 0 0 15 10 0 0 0 0 0 0 (178) THR186 0 0 0 8 4 6 0 0 0 0 (180) ASN188 0 0 0 4 0 0 0 0 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqQnhypdftlykpsepnkkiaidikttytnkenekikfTlggytsfirnntknivypfdqyiahwiigyvytrvktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk >1bgb_AB: title=ECORV ENDONUCLEASE COMPLEX WITH 5'-CGGGATATCCC DNA organism=Escherichia coli DNA sequence DG(C802):DC(D911) DG(C803):DC(D910) DG(C804):DC(D909) DA(C805):DT(D908) DT(C806):DA(D907) DA(C807):DT(D906) DT(C808):DA(D905) DC(C809):DG(D904) DC(C810):DG(D903) DC(C811):DG(D902) chainA (105) THR106 0 0 1 9 0 0 0 0 0 0 (175) SER183 0 0 2 5 0 0 0 0 0 0 (177) ASN185 0 0 15 10 0 0 0 0 0 0 (178) THR186 0 0 0 8 4 6 0 0 0 0 (180) ASN188 0 0 0 4 0 0 0 0 0 0 chainB ( 62) ASN70 0 0 4 4 1 0 0 0 0 0 ( 94) THR106 0 0 0 0 0 0 7 0 0 0 (166) SER183 0 0 0 0 0 0 5 2 0 0 (168) ASN185 0 0 0 0 0 0 10 15 0 0 (169) THR186 0 0 0 0 5 3 9 0 0 0 (171) ASN188 0 0 0 0 0 0 4 0 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqQnhypdftlykpsepnkkiaidikttytnkenekikfTlggytsfirnntknivypfdqyiahwiigyvytrvktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk/slrsdlinaldvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytnkiKfTlggytsfirnntknivypfdqyiahwiigyvytrvslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk >1bhm_A:Restriction_endonuclease-like; title=RESTRICTION ENDONUCLEASE BAMHI COMPLEX WITH DNA organism=Bacillus amyloliquefaciens DNA sequence DA(C2):DT(D11) DT(C3):DA(D10) DG(C4):DC(D9) DG(C5):DC(D8) DA(C6):DT(D7) DT(C7):DA(D6) DC(C8):DG(D5) DC(C9):DG(D4) DA(C10):DT(D3) DT(C11):DA(D2) chainA (116) ASN116 0 0 0 7 7 0 0 0 0 0 (122) ARG122 0 0 0 0 0 0 2 1 0 0 (153) THR153 0 0 0 0 3 0 0 0 0 0 (154) ASP154 0 0 4 5 0 0 0 0 0 0 (155) ARG155 0 24 20 5 0 0 0 0 0 0 (156) VAL156 0 0 0 0 1 0 0 0 0 0 (196) ASP196 0 0 0 0 0 9 5 1 0 0 (198) MET198 0 0 0 0 1 0 0 0 0 0 prot.sequence mevekefitdeakellskdkliqqaynevktsicspiwpatsktftinntekncngvvpikelcytlledtynwyrekpldilklekkkggpidvykefienselkrvgmefetgNissahRsmnklllglkhgeidlaiilmpikqlayylTDRVtnfeelepyfeltegqpfifigfnaeaynsnvplipkgsDgM >1bhm_AB: title=RESTRICTION ENDONUCLEASE BAMHI COMPLEX WITH DNA organism=Bacillus amyloliquefaciens DNA sequence DA(C2):DT(D11) DT(C3):DA(D10) DG(C4):DC(D9) DG(C5):DC(D8) DA(C6):DT(D7) DT(C7):DA(D6) DC(C8):DG(D5) DC(C9):DG(D4) DA(C10):DT(D3) DT(C11):DA(D2) chainA (116) ASN116 0 0 0 7 7 0 0 0 0 0 (122) ARG122 0 0 0 0 0 0 2 1 0 0 (153) THR153 0 0 0 0 3 0 0 0 0 0 (154) ASP154 0 0 4 5 0 0 0 0 0 0 (155) ARG155 0 24 20 5 0 0 0 0 0 0 (156) VAL156 0 0 0 0 1 0 0 0 0 0 (196) ASP196 0 0 0 0 0 9 5 1 0 0 (198) MET198 0 0 0 0 1 0 0 0 0 0 chainB (116) ASN116 0 0 0 0 0 9 6 0 0 0 (122) ARG122 0 0 4 2 0 0 0 0 0 0 (153) THR153 0 0 0 0 0 4 0 0 0 0 (154) ASP154 0 0 0 0 0 0 6 5 0 0 (155) ARG155 0 0 0 0 0 0 6 15 21 0 (156) VAL156 0 0 0 0 0 1 0 0 0 0 prot.sequence mevekefitdeakellskdkliqqaynevktsicspiwpatsktftinntekncngvvpikelcytlledtynwyrekpldilklekkkggpidvykefienselkrvgmefetgNissahRsmnklllglkhgeidlaiilmpikqlayylTDRVtnfeelepyfeltegqpfifigfnaeaynsnvplipkgsDgM/mevekefitdeakellskdkliqqaynevktsicspiwpatsktftinnteKncngvvpikelcytlledtynwyrekpldilklekkkggpidvykefienselkrvgmefetgNissahRsmnklllglkhgeidlaiilmpikqlayylTDRVtnfeelepyfeltegqpfifigfnaeaynsnvplipkgsdgmskrsikkwkd >1bl0_A:Homeodomain-like; title=MULTIPLE ANTIBIOTIC RESISTANCE PROTEIN (MARA)/DNA COMPLEX organism=Escherichia coli DNA sequence DG(B403):DC(C448) DG(B404):DC(C447) DA(B405):DT(C446) DT(B406):DA(C445) DT(B407):DA(C444) DT(B408):DA(C443) DA(B409):DT(C442) DG(B410):DC(C441) DC(B411):DG(C440) DA(B412):DT(C439) DA(B413):DT(C438) DA(B414):DT(C437) DA(B415):DT(C436) DC(B416):DG(C435) DG(B417):DC(C434) DT(B418):DA(C433) DG(B419):DC(C432) DG(B420):DC(C431) DC(B421):DG(C430) DA(B422):DT(C429) DT(B423):DA(C428) DC(B424):DG(C427) chainA ( 32) SER40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 ( 34) TRP42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 16 9 0 0 0 0 ( 35) HIS43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 ( 37) GLN45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 4 0 0 0 0 0 0 ( 38) ARG46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 8 6 2 0 0 ( 83) GLN91 0 0 0 2 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 84) GLN92 0 0 0 1 9 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 87) THR95 0 0 0 0 6 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 88) ARG96 0 0 0 0 0 0 1 7 12 15 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence daitihsildwiednlesplslekvsersgySkWHlQRmfkketghslgqyirsrkmteiaqklkesnepilylaerygfesQQtlTRtfknyfdvpphkyrmtnmqgesrflhpl >1bnk_A:FMT_C-terminal_domain-like; title=HUMAN 3-METHYLADENINE DNA GLYCOSYLASE COMPLEXED TO DNA organism=Homo sapiens DNA sequence DG(D1):DC(E25) DA(D2):DT(E24) DC(D3):DG(E23) DA(D4):DT(E22) DT(D5):DA(E21) DG(D6):DC(E20) YRR(D7):DT(E19) DT(D8):DA(E18) DT(D9):DA(E17) DG(D10):DC(E16) DC(D11):DG(E15) DC(D12):DG(E14) chainA ( 83) TYR162 0 0 0 0 0 44 1 41 0 0 0 0 ( 85) MET164 0 0 0 0 0 0 2 3 0 0 0 0 ( 86) TYR165 0 0 0 0 0 0 0 5 1 0 0 0 prot.sequence kghltrlgleffdqpavplaraflgqvlvrrlpngtelrgriveteaylgpedeaahsrggrqtprnrgmfmkpgtlyvyiiYgMYfcmnissqgdgacvllraleplegletmrqlrsrvlkdrelcsgpsklcqalainksfdqrdlaqdeavwleravvaaarvgvghagewarkplrfyvrgspwvsvvdrvaeqd >1bnz_A:Chromo_domain-like; title=SSO7D HYPERTHERMOPHILE PROTEIN/DNA COMPLEX organism=SULFOLOBUS ACIDOCALDARIUS DNA sequence DG(C74):DC(B73) DT(C75):DA(B72) DA(C76):DT(B71) DA(C77):DT(B70) DT(C78):DA(B69) DT(C79):DA(B68) DA(C80):DT(B67) DC(C81):DG(B66) chainA ( 24) TRP24 0 0 0 4 8 0 0 0 ( 26) VAL26 0 0 0 0 13 6 0 0 ( 29) MET29 0 0 0 0 8 20 0 0 ( 31) SER31 0 0 0 0 4 0 0 0 ( 43) ARG43 0 8 7 1 0 0 0 0 ( 45) ALA45 0 0 0 0 1 0 0 0 prot.sequence matvkfkYkgeekevdiskikkvWrVgkMiSftydegggktgRgAvsekdapkellqmlekqkk >1bp7_AB:Homing_endonucleases; title=GROUP I MOBILE INTRON ENDONUCLEASE I-CREI COMPLEXED WITH HOMING SITE DNA organism=Chlamydomonas reinhardtii DNA sequence DC(21):DG(124) DG(22):DC(123) DA(23):DT(122) DA(24):DT(121) DA(25):DT(120) DC(26):DG(119) DT(27):DA(118) DG(28):DC(117) DT(29):DA(116) DC(210):DG(115) DT(211):DA(114) DC(212):DG(113) DA(213):DT(112) DC(214):DG(111) DG(215):DC(110) DA(216):DT(19) DC(217):DG(18) DG(218):DC(17) DT(219):DA(16) DT(220):DA(15) DT(221):DA(14) DT(222):DA(13) DG(223):DC(12) DC(224):DG(11) chainA ( 21) SER22 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 23) ILE24 0 0 0 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) GLN26 0 0 0 0 0 0 5 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 27) LYS28 0 0 0 0 3 9 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) ASN30 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 31) SER32 4 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 32) TYR33 0 20 9 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 37) GLN38 0 0 3 10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 43) GLN44 0 0 0 0 0 0 0 1 5 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 45) THR46 0 0 0 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 65) TYR66 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 67) ARG68 0 0 0 0 0 0 10 11 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 69) ARG70 0 0 0 0 0 0 0 0 12 9 3 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 72) VAL73 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 (138) LYS139 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 (139) THR140 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 21) SER22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 23) ILE24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 ( 25) GLN26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 7 0 0 0 0 0 0 ( 27) LYS28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 14 4 0 0 0 0 ( 29) ASN30 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 7 0 0 0 ( 31) SER32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 ( 32) TYR33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 10 11 0 ( 37) GLN38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 11 4 0 0 ( 43) GLN44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 7 1 0 0 0 0 0 0 0 ( 45) THR46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 ( 65) TYR66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 ( 67) ARG68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 11 11 0 0 0 0 0 0 ( 69) ARG70 0 0 0 0 0 0 0 0 0 0 0 0 0 2 12 17 0 0 0 0 0 0 0 0 ( 72) VAL73 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 ( 74) ASP75 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 (139) THR140 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 prot.sequence ntkynkefllylagfvdgdgSiIaQiKpNqSYkfkhQlsltfQvTqktqrrwfldklvdeigvgYvRdRgsVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld/ntkynkefllylagfvdgdgSiIaQiKpNqSYkfkhQlsltfQvTqktqrrwfldklvdeigvgYvRdRgsVsDyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndskTrkttsetvravld >1bp7_CD:Homing_endonucleases; title=GROUP I MOBILE INTRON ENDONUCLEASE I-CREI COMPLEXED WITH HOMING SITE DNA organism=Chlamydomonas reinhardtii DNA sequence DG(31):DC(424) DC(32):DG(423) DA(33):DT(422) DA(34):DT(421) DA(35):DT(420) DA(36):DT(419) DC(37):DG(418) DG(38):DC(417) DT(39):DA(416) DC(310):DG(415) DG(311):DC(414) DT(312):DA(413) DG(313):DC(412) DA(314):DT(411) DG(315):DC(410) DA(316):DT(49) DC(317):DG(48) DA(318):DT(47) DG(319):DC(46) DT(320):DA(45) DT(321):DA(44) DT(322):DA(43) DC(323):DG(42) DG(324):DC(41) chainC ( 21) SER22 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 23) ILE24 0 0 0 0 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) GLN26 0 0 0 0 0 1 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 27) LYS28 0 0 0 0 5 14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) ASN30 0 0 0 7 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 31) SER32 2 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 32) TYR33 0 17 12 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 37) GLN38 0 0 4 11 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 43) GLN44 0 0 0 0 0 0 0 1 7 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 45) THR46 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 65) TYR66 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 67) ARG68 0 0 0 0 0 0 10 10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 69) ARG70 0 0 0 0 0 0 0 0 20 11 4 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 72) VAL73 0 0 0 0 0 0 0 0 0 0 5 1 0 0 0 0 0 0 0 0 0 0 0 0 ( 74) ASP75 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (138) LYS139 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (139) THR140 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainD ( 21) SER22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 23) ILE24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 2 0 0 0 0 0 0 0 ( 25) GLN26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 5 0 0 0 0 0 0 ( 27) LYS28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 9 4 0 0 0 0 ( 29) ASN30 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 4 0 0 0 ( 31) SER32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 ( 32) TYR33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 9 13 0 ( 37) GLN38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 10 3 0 0 ( 43) GLN44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 8 1 0 0 0 0 0 0 0 ( 45) THR46 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 0 0 0 0 0 0 0 ( 65) TYR66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 67) ARG68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 11 13 0 0 0 0 0 0 ( 69) ARG70 0 0 0 0 0 0 0 0 0 0 0 0 0 5 11 10 0 0 0 0 0 0 0 0 ( 72) VAL73 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 0 0 0 0 0 0 0 0 (138) LYS139 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 (139) THR140 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 prot.sequence ntkynkefllylagfvdgdgSiIaQiKpNqSYkfkhQlsltfQvTqktqrrwfldklvdeigvgYvRdRgsVsDyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld/ntkynkefllylagfvdgdgSiIaQiKpNqSYkfkhQlsltfQvTqktqrrwfldklvdeigvgYvRdRgsVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld >1bp7_D:Homing_endonucleases; title=GROUP I MOBILE INTRON ENDONUCLEASE I-CREI COMPLEXED WITH HOMING SITE DNA organism=Chlamydomonas reinhardtii DNA sequence DG(31):DC(424) DC(32):DG(423) DA(33):DT(422) DA(34):DT(421) DA(35):DT(420) DA(36):DT(419) DC(37):DG(418) DG(38):DC(417) DT(39):DA(416) DC(310):DG(415) DG(311):DC(414) DT(312):DA(413) DG(313):DC(412) DA(314):DT(411) DG(315):DC(410) DA(316):DT(49) DC(317):DG(48) DA(318):DT(47) DG(319):DC(46) DT(320):DA(45) DT(321):DA(44) DT(322):DA(43) DC(323):DG(42) DG(324):DC(41) chainD ( 21) SER22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 23) ILE24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 2 0 0 0 0 0 0 0 ( 25) GLN26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 5 0 0 0 0 0 0 ( 27) LYS28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 9 4 0 0 0 0 ( 29) ASN30 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 4 0 0 0 ( 31) SER32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 ( 32) TYR33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 9 13 0 ( 37) GLN38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 10 3 0 0 ( 43) GLN44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 8 1 0 0 0 0 0 0 0 ( 45) THR46 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 0 0 0 0 0 0 0 ( 65) TYR66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 67) ARG68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 11 13 0 0 0 0 0 0 ( 69) ARG70 0 0 0 0 0 0 0 0 0 0 0 0 0 5 11 10 0 0 0 0 0 0 0 0 ( 72) VAL73 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 0 0 0 0 0 0 0 0 (138) LYS139 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 (139) THR140 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 prot.sequence ntkynkefllylagfvdgdgSiIaQiKpNqSYkfkhQlsltfQvTqktqrrwfldklvdeigvgYvRdRgsVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld >1bss_AB: title=ECORV-T93A/DNA/CA2+ organism=Escherichia coli DNA sequence DA(C902):DT(D811) DA(C903):DT(D810) DG(C904):DC(D809) DA(C905):DT(D808) DT(C906):DA(D807) DA(C907):DT(D806) DT(C908):DA(D805) DC(C909):DG(D804) DT(C910):DA(D803) DT(C911):DA(D802) chainA ( 67) ASN70 0 0 5 7 1 0 0 0 0 0 ( 98) THR106 0 0 0 0 0 0 9 1 0 0 (168) SER183 0 0 0 0 0 0 7 4 0 0 (170) ASN185 0 0 0 0 0 0 13 16 0 0 (171) THR186 0 0 0 0 7 7 7 0 0 0 (173) ASN188 0 0 0 0 0 2 6 0 0 0 chainB ( 63) ASN70 0 0 0 0 0 0 7 6 0 0 ( 93) LYS104 0 1 0 0 0 0 0 0 0 0 ( 95) THR106 0 0 0 8 0 0 0 0 0 0 (166) SER183 0 0 4 6 0 0 0 0 0 0 (168) ASN185 0 0 16 11 0 0 0 0 0 0 (169) THR186 0 0 0 8 8 6 0 0 0 0 (171) ASN188 0 0 0 4 0 0 0 0 0 0 prot.sequence lrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepqqNhypdftlykpsepnkkiaidikatytkikfTlggytsfirnntknivypfdqyiahwiigyvytrvktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk/slrsdlinalydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikatytnkiKfTlggytsfirnntknivypfdqyiahwiigyvytrslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk >1bss_B:Restriction_endonuclease-like; title=ECORV-T93A/DNA/CA2+ organism=Escherichia coli DNA sequence DA(C902):DT(D811) DA(C903):DT(D810) DG(C904):DC(D809) DA(C905):DT(D808) DT(C906):DA(D807) DA(C907):DT(D806) DT(C908):DA(D805) DC(C909):DG(D804) DT(C910):DA(D803) DT(C911):DA(D802) chainB ( 63) ASN70 0 0 0 0 0 0 7 6 0 0 ( 93) LYS104 0 1 0 0 0 0 0 0 0 0 ( 95) THR106 0 0 0 8 0 0 0 0 0 0 (166) SER183 0 0 4 6 0 0 0 0 0 0 (168) ASN185 0 0 16 11 0 0 0 0 0 0 (169) THR186 0 0 0 8 8 6 0 0 0 0 (171) ASN188 0 0 0 4 0 0 0 0 0 0 prot.sequence slrsdlinalydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikatytnkiKfTlggytsfirnntknivypfdqyiahwiigyvytrslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk >1bsu_AB: title=STRUCTURAL AND ENERGETIC ORIGINS OF INDIRECT READOUT IN SITE-SPECIFIC DNA CLEAVAGE BY A RESTRICTION ENDONUCLEASE organism=Escherichia coli DNA sequence DA(D802):DT(C911) DA(D803):DT(C910) DG(D804):DC(C909) DA(D805):DT(C908) 5CM(D806):DI(C907) DI(D807):5CM(C906) DT(D808):DA(C905) DC(D809):DG(C904) DT(D810):DA(C903) DT(D811):DA(C902) chainA ( 69) ASN70 0 0 0 0 0 0 2 2 0 0 (103) LYS104 0 1 0 0 0 0 0 0 0 0 (105) THR106 0 0 0 9 0 0 0 0 0 0 (175) SER183 0 0 4 8 0 0 0 0 0 0 (177) ASN185 0 0 16 11 0 0 0 0 0 0 (178) THR186 0 0 0 8 7 6 0 0 0 0 (180) ASN188 0 0 0 4 0 0 0 0 0 0 chainB ( 65) ASN70 0 0 4 6 1 0 0 0 0 0 ( 94) LYS104 0 0 0 0 0 0 0 0 1 0 ( 96) THR106 0 0 0 0 0 0 9 0 0 0 (168) SER183 0 0 0 0 0 0 6 3 0 0 (170) ASN185 0 0 0 0 0 0 10 16 0 0 (171) THR186 0 0 0 0 6 6 8 0 0 0 (173) ASN188 0 0 0 0 0 0 4 0 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytnkenekiKfTlggytsfirnntknivypfdqyiahwiigyvytrvktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgr/slrsdlinalydedvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytniKfTlggytsfirnntknivypfdqyiahwiigyvytrvslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgr >1bsu_B:Restriction_endonuclease-like; title=STRUCTURAL AND ENERGETIC ORIGINS OF INDIRECT READOUT IN SITE-SPECIFIC DNA CLEAVAGE BY A RESTRICTION ENDONUCLEASE organism=Escherichia coli DNA sequence DA(D802):DT(C911) DA(D803):DT(C910) DG(D804):DC(C909) DA(D805):DT(C908) 5CM(D806):DI(C907) DI(D807):5CM(C906) DT(D808):DA(C905) DC(D809):DG(C904) DT(D810):DA(C903) DT(D811):DA(C902) chainB ( 65) ASN70 0 0 4 6 1 0 0 0 0 0 ( 94) LYS104 0 0 0 0 0 0 0 0 1 0 ( 96) THR106 0 0 0 0 0 0 9 0 0 0 (168) SER183 0 0 0 0 0 0 6 3 0 0 (170) ASN185 0 0 0 0 0 0 10 16 0 0 (171) THR186 0 0 0 0 6 6 8 0 0 0 (173) ASN188 0 0 0 0 0 0 4 0 0 0 prot.sequence slrsdlinalydedvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytniKfTlggytsfirnntkNivypfdqyiahwiigyvytrvslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgr >1bua_A:Restriction_endonuclease-like; title=STRUCTURAL AND ENERGETIC ORIGINS OF INDIRECT READOUT IN SITE-SPECIFIC DNA CLEAVAGE BY A RESTRICTION ENDONUCLEASE organism=Escherichia coli DNA sequence DA(D802):DT(C911) DA(D803):DT(C910) DG(D804):DC(C909) DA(D805):DT(C908) DC(D806):DI(C907) DI(D807):DC(C906) DT(D808):DA(C905) DC(D809):DG(C904) DT(D810):DA(C903) DT(D811):DA(C902) chainA ( 68) ASN70 0 0 0 0 0 1 7 5 0 0 (100) THR106 0 0 1 9 0 0 0 0 0 0 (170) SER183 0 0 2 7 0 0 0 0 0 0 (172) ASN185 0 0 16 12 0 0 0 0 0 0 (173) THR186 0 0 0 8 8 3 0 0 0 0 (175) ASN188 0 0 0 4 0 0 0 0 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepqqNhypdftlykpsepnkkiaidikttytekikfTlggytsfirnntknivypfdqyiahwiigyvytrvktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgr >1bua_AB: title=STRUCTURAL AND ENERGETIC ORIGINS OF INDIRECT READOUT IN SITE-SPECIFIC DNA CLEAVAGE BY A RESTRICTION ENDONUCLEASE organism=Escherichia coli DNA sequence DA(C902):DT(D811) DA(C903):DT(D810) DG(C904):DC(D809) DA(C905):DT(D808) DC(C906):DI(D807) DI(C907):DC(D806) DT(C908):DA(D805) DC(C909):DG(D804) DT(C910):DA(D803) DT(C911):DA(D802) chainA ( 68) ASN70 0 0 5 7 1 0 0 0 0 0 (100) THR106 0 0 0 0 0 0 9 1 0 0 (170) SER183 0 0 0 0 0 0 7 2 0 0 (172) ASN185 0 0 0 0 0 0 12 16 0 0 (173) THR186 0 0 0 0 3 8 8 0 0 0 (175) ASN188 0 0 0 0 0 0 4 0 0 0 chainB ( 65) ASN70 0 0 0 0 0 6 5 3 0 0 ( 95) LYS104 0 1 0 0 0 0 0 0 0 0 ( 97) THR106 0 0 0 9 0 0 0 0 0 0 (168) SER183 0 0 4 6 0 0 0 0 0 0 (170) ASN185 0 0 19 10 0 0 0 0 0 0 (171) THR186 0 0 0 8 8 4 0 0 0 0 (173) ASN188 0 0 0 4 0 0 0 0 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepqqNhypdftlykpsepnkkiaidikttytekikfTlggytsfirnntknivypfdqyiahwiigyvytrvktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgr/slrsdlinalydedvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytnkiKfTlggytsfirnntknivypfdqyiahwiigyvytrslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgr >1by4_A:Glucocorticoid_receptor-like_DNA-binding_domain; title=STRUCTURE AND MECHANISM OF THE HOMODIMERIC ASSEMBLY OF THE RXR ON DNA organism=Homo sapiens DNA sequence DT(E1495):DA(F1545) DA(E1496):DT(F1544) DG(E1497):DC(F1543) DG(E1498):DC(F1542) DT(E1499):DA(F1541) DC(E1500):DG(F1540) DA(E1501):DT(F1539) DA(E1502):DT(F1538) DA(E1503):DT(F1537) DG(E1504):DC(F1536) DG(E1505):DC(F1535) DT(E1506):DA(F1534) DC(E1507):DG(F1533) DA(E1508):DT(F1532) DG(E1509):DC(F1531) chainA ( 23) GLU1153 0 0 0 10 4 0 0 0 0 0 0 0 0 0 0 ( 26) LYS1156 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 ( 30) LYS1160 0 0 3 5 0 0 0 0 0 0 0 0 0 0 0 ( 31) ARG1161 0 0 0 0 0 8 12 0 0 0 0 0 0 0 0 prot.sequence tkhicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqeer >1by4_BC: title=STRUCTURE AND MECHANISM OF THE HOMODIMERIC ASSEMBLY OF THE RXR ON DNA organism=Homo sapiens DNA sequence DT(E1495):DA(F1545) DA(E1496):DT(F1544) DG(E1497):DC(F1543) DG(E1498):DC(F1542) DT(E1499):DA(F1541) DC(E1500):DG(F1540) DA(E1501):DT(F1539) DA(E1502):DT(F1538) DA(E1503):DT(F1537) DG(E1504):DC(F1536) DG(E1505):DC(F1535) DT(E1506):DA(F1534) DC(E1507):DG(F1533) DA(E1508):DT(F1532) DG(E1509):DC(F1531) DT(G2495):DA(H2545) DA(G2496):DT(H2544) DG(G2497):DC(H2543) DG(G2498):DC(H2542) DT(G2499):DA(H2541) DC(G2500):DG(H2540) DA(G2501):DT(H2539) DA(G2502):DT(H2538) DA(G2503):DT(H2537) DG(G2504):DC(H2536) DG(G2505):DC(H2535) DT(G2506):DA(H2534) DC(G2507):DG(H2533) DA(G2508):DT(H2532) DG(G2509):DC(H2531) chainB ( 26) GLU1253 0 0 0 0 0 0 0 0 0 0 8 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) LYS1256 0 0 0 0 0 0 0 0 0 6 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 33) LYS1260 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 34) ARG1261 0 0 0 0 0 0 0 0 0 0 0 0 7 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainC ( 22) GLU2153 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 9 0 0 0 0 0 0 0 0 0 0 ( 25) LYS2156 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) LYS2160 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 ( 30) ARG2161 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 12 0 0 0 0 0 0 0 0 prot.sequence gsftkhicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqeer/khicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqeer >1c0w_ABCD: title=CRYSTAL STRUCTURE OF THE COBALT-ACTIVATED DIPHTHERIA TOXIN REPRESSOR- DNA COMPLEX REVEALS A METAL BINDING SH-LIKE DOMAIN organism=Corynebacterium diphtheriae DNA sequence DA(E401):DT(F521) DT(E402):DA(F520) DT(E403):DA(F519) DA(E404):DT(F518) DG(E405):DC(F517) DG(E406):DC(F516) DT(E408):DA(F514) DA(E409):DT(F513) DG(E410):DC(F512) DC(E411):DG(F511) DC(E412):DG(F510) DT(E413):DA(F509) DA(E414):DT(F508) DC(E416):DG(F506) DC(E417):DG(F505) DT(E418):DA(F504) DA(E419):DT(F503) DA(E420):DT(F502) DT(E421):DA(F501) chainA ( 36) SER37 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 ( 38) PRO39 0 0 0 0 0 0 5 8 0 0 0 0 0 0 0 0 0 0 0 ( 39) THR40 0 0 0 0 0 0 0 0 2 3 0 0 0 0 0 0 0 0 0 ( 42) GLN43 0 0 0 0 0 0 0 0 0 5 10 0 0 0 0 0 0 0 0 ( 46) ARG47 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 chainB ( 36) SER37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 4 0 0 0 ( 38) PRO39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 8 3 4 0 ( 39) THR40 0 0 0 0 0 0 0 0 0 0 0 0 0 5 4 0 0 0 0 ( 41) SER42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 ( 42) GLN43 0 0 0 0 0 0 0 0 0 0 0 0 0 10 0 0 0 0 0 chainC ( 36) SER37 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 0 0 0 0 ( 38) PRO39 0 0 0 0 0 0 0 0 0 0 0 10 6 0 0 0 0 0 0 ( 39) THR40 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 ( 42) GLN43 0 0 0 0 0 0 0 0 7 9 0 0 0 0 0 0 0 0 0 ( 46) ARG47 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 chainD ( 36) SER37 0 0 0 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 38) PRO39 0 5 3 7 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 39) THR40 0 0 0 0 4 7 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 41) SER42 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 42) GLN43 0 0 0 0 0 10 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence kdlvdttemylrtiyeleeegvtplrariaerleqSgPTvsQtvaRmerdglvvvasdrslqmtptgrtlatavmrkhrlaerlltdiigldinkvhdeacrwehvmsdeverrlvkvlkdvsrspfgnpipgldelgvivqineifqvetdqftqlldavellddlahtiri/kdlvdttemylrtiyeleeegvtplrariaerleqSgPTvSQtvarmerdglvvvasdrslqmtptgrtlatavmrkhrlaerlltdiigldinkvhdeacrwehvmsdeverrlvkvlkdvsrspfgnpipgldelgvapgtrvidaatsmprkvrivqineifqvetdqftqlldadirvgseveivdrdghitlshngkdvellddlahtirieel/kdlvdttemylrtiyeleeegvtplrariaerleqSgPTvsQtvaRmerdglvvvasdrslqmtptgrtlatavmrkhrlaerlltdiigldinkvhdeacrwehvmsdeverrlvkvlkdvsrspfgnpipgldelgvivqineifqvetdqftqlldadirvellddlahtir/kdlvdttemylrtiyeleeegvtplrariaerleqSgPTvSQtvarmerdglvvvasdrslqmtptgrtlatavmrkhrlaerlltdiigldinkvhdeacrwehvmsdeverrlvkvlkdvsrspfgnpipgldelgvvqineifqvetdqftqlldadirvvellddlahtir >1c0w_D:Iron-dependent_repressor_protein,_dimerization_domain;"Winged_helix"_DNA-binding_domain;C-terminal_domain_of_transcriptional_repressors; title=CRYSTAL STRUCTURE OF THE COBALT-ACTIVATED DIPHTHERIA TOXIN REPRESSOR- DNA COMPLEX REVEALS A METAL BINDING SH-LIKE DOMAIN organism=Corynebacterium diphtheriae DNA sequence DA(F501):DT(E421) DT(F502):DA(E420) DT(F503):DA(E419) DA(F504):DT(E418) DG(F505):DC(E417) DG(F506):DC(E416) DT(F508):DA(E414) DA(F509):DT(E413) DG(F510):DC(E412) DG(F511):DC(E411) DC(F512):DG(E410) DT(F513):DA(E409) DA(F514):DT(E408) DC(F516):DG(E406) DC(F517):DG(E405) DT(F518):DA(E404) DA(F519):DT(E403) DA(F520):DT(E402) DT(F521):DA(E401) chainD ( 36) SER37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 2 0 0 0 ( 38) PRO39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 7 3 5 0 ( 39) THR40 0 0 0 0 0 0 0 0 0 0 0 0 0 7 4 0 0 0 0 ( 41) SER42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 ( 42) GLN43 0 0 0 0 0 0 0 0 0 0 0 0 0 10 0 0 0 0 0 prot.sequence kdlvdttemylrtiyeleeegvtplrariaerleqSgPTvSQtvarmerdglvvvasdrslqmtptgrtlatavmrkhrlaerlltdiigldinkvhdeacrwehvmsdeverrlvkvlkdvsrspfgnpipgldelgvvqineifqvetdqftqlldadirvvellddlahtir >1c7u_AB:SRF-like; title=COMPLEX OF THE DNA BINDING CORE DOMAIN OF THE TRANSCRIPTION FACTOR MEF2A WITH A 20MER OLIGONUCLEOTIDE organism=HOMO SAPIENS DNA sequence DC(C201):DG(D240) DT(C202):DA(D239) DC(C203):DG(D238) DG(C204):DC(D237) DG(C205):DC(D236) DC(C206):DG(D235) DT(C207):DA(D234) DA(C208):DT(D233) DT(C209):DA(D232) DT(C210):DA(D231) DA(C211):DT(D230) DA(C212):DT(D229) DT(C213):DA(D228) DA(C214):DT(D227) DG(C215):DC(D226) DC(C216):DG(D225) DC(C217):DG(D224) DG(C218):DC(D223) DA(C219):DT(D222) DG(C220):DC(D221) chainA ( 2) ARG2 0 0 0 0 0 0 7 12 0 0 0 0 0 0 0 0 0 0 0 0 ( 14) ARG14 0 0 12 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 18) VAL18 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 22) LYS22 0 0 0 0 0 2 10 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 2) ARG102 0 0 0 0 0 0 0 0 0 0 0 0 12 7 0 0 0 0 0 0 ( 14) ARG114 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 12 0 0 ( 18) VAL118 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 22) LYS122 0 0 0 0 0 0 0 0 0 0 0 0 0 10 2 0 0 0 0 0 prot.sequence gRkkiqitrimdeRnrqVtftKrkfglmkkayelsvladaeialiifnssnklfqyastdmdkvllkyteynep/gRkkiqitrimdeRnrqVtftKrkfglmkkayelsvladaeialiifnssnklfqyastdmdkvllkyteynep >1c8c_A:Chromo_domain-like; title=CRYSTAL STRUCTURES OF THE CHROMOSOMAL PROTEINS SSO7D/SAC7D BOUND TO DNA CONTAINING T-G MISMATCHED BASE PAIRS organism=SULFOLOBUS SOLFATARICUS DNA sequence DG(C109):DC(B108) DT(C110):DG(B107) DG(C111):DC(B106) DA(C112):DT(B105) DT(C113):DA(B104) DC(C114):DG(B103) DG(C115):DT(B102) DC(C116):DG(B101) chainA ( 8) TYR8 0 0 0 0 1 0 0 0 ( 24) TRP24 0 0 0 0 2 10 0 0 ( 26) VAL26 0 0 0 0 0 5 6 0 ( 29) MET29 0 0 0 0 0 10 17 0 ( 31) SER31 0 0 0 0 0 5 0 0 ( 43) ARG43 0 0 8 7 0 0 0 0 ( 45) ALA45 0 0 0 0 0 1 0 0 prot.sequence matvkfkYkgeekqvdiskikkvWrVgkMiSftydegggktgRgAvsekdapkellqmlakqkk >1c9b_AEIM: title=CRYSTAL STRUCTURE OF A HUMAN TBP CORE DOMAIN-HUMAN TFIIB CORE DOMAIN COMPLEX BOUND TO AN EXTENDED, MODIFIED ADENOVIRAL MAJOR LATE PROMOTER (ADMLP) organism=HOMO SAPIENS DNA sequence DG(K2):DC(L118) DG(K3):DC(L117) DC(K4):DG(L116) DG(K5):DC(L115) DC(K6):DG(L114) DC(K7):DG(L113) DT(K8):DA(L112) DA(K9):DT(L111) DT(K10):DA(L110) DA(K11):DT(L109) DA(K12):DT(L108) DA(K13):DT(L107) DA(K14):DT(L106) DG(K15):DC(L105) DG(K16):DC(L104) DG(K17):DC(L103) DG(K18):DC(L102) DG(C1):DC(L101) DG(C2):DC(D118) DG(C3):DC(D117) DC(C4):DG(D116) DG(C5):DC(D115) DC(C6):DG(D114) DC(C7):DG(D113) DT(C8):DA(D112) DA(C9):DT(D111) DT(C10):DA(D110) DA(C11):DT(D109) DA(C12):DT(D108) DA(C13):DT(D107) DA(C14):DT(D106) DG(C15):DC(D105) DG(C16):DC(D104) DG(C17):DC(D103) DG(C18):DC(D102) DG(G1):DC(D101) DG(G2):DC(H118) DG(G3):DC(H117) DC(G4):DG(H116) DG(G5):DC(H115) DC(G6):DG(H114) DC(G7):DG(H113) DT(G8):DA(H112) DA(G9):DT(H111) DT(G10):DA(H110) DA(G11):DT(H109) DA(G12):DT(H108) DA(G13):DT(H107) DA(G14):DT(H106) DG(G15):DC(H105) DG(G16):DC(H104) DG(G17):DC(H103) DG(G18):DC(H102) DG(O1):DC(H101) DG(O2):DC(P118) DG(O3):DC(P117) DC(O4):DG(P116) DG(O5):DC(P115) DC(O6):DG(P114) DC(O7):DG(P113) DT(O8):DA(P112) DA(O9):DT(P111) DT(O10):DA(P110) DA(O11):DT(P109) DA(O12):DT(P108) DA(O13):DT(P107) DA(O14):DT(P106) DG(O15):DC(P105) DG(O16):DC(P104) DG(O17):DC(P103) DG(O18):DC(P102) chainA (174) VAL283 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (177) ARG286 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainE (174) VAL283 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (177) ARG286 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainI (174) VAL283 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainM (174) VAL283 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 (177) ARG286 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence sdrammnafkeittmadrinlprnivdrtnnlfkqvyeqkslkgrandaiasaclyiacrqegvprtfkeicavsriskkeigrcfklilkaletsvdlittgdfmsrfcsnlclpkqvqmaathiarkaveldlvpgrspisvaaaaiymasqasaekrtqkeigdiagvadVtiRqsyrliyprapdlfptdfkfdtpvdklpql/sdrammnafkeittmadrinlprnivdrtnnlfkqvyeqkslkgrandaiasaclyiacrqegvprtfkeicavsriskkeigrcfklilkaletsvdlittgdfmsrfcsnlclpkqvqmaathiarkaveldlvpgrspisvaaaaiymasqasaekrtqkeigdiagvaDVtiRqsyrliyprapdlfptdfkfdtpvdklpql/sdrammnafkeittmadrinlprnivdrtnnlfkqvyeqkslkgrandaiasaclyiacrqegvprtfkeicavsriskkeigrcfklilkaletsvdlittgdfmsrfcsnlclpkqvqmaathiarkaveldlvpgrspisvaaaaiymasqasaekrtqkeigdiagvadVtirqsyrliyprapdlfptdfkfdtpvdklpql/sdrammnafkeittmadrinlprnivdrtnnlfkqvyeqkslkgrandaiasaclyiacrqegvprtfkeicavsriskkeigrcfklilkaletsvdlittgdfmsrfcsnlclpkqvqmaathiarkaveldlvpgrspisvaaaaiymasqasaekrtqkeigdiagvadVtiRqsyrliyprapdlfptdfkfdtpvdklpql >1c9b_QR: title=CRYSTAL STRUCTURE OF A HUMAN TBP CORE DOMAIN-HUMAN TFIIB CORE DOMAIN COMPLEX BOUND TO AN EXTENDED, MODIFIED ADENOVIRAL MAJOR LATE PROMOTER (ADMLP) organism=HOMO SAPIENS DNA sequence DC(T102):DG(S18) DC(T103):DG(S17) DC(T104):DG(S16) DC(T105):DG(S15) DT(T106):DA(S14) DT(T107):DA(S13) DT(T108):DA(S12) DT(T109):DA(S11) DA(T110):DT(S10) DT(T111):DA(S9) DA(T112):DT(S8) DG(T113):DC(S7) DG(T114):DC(S6) DC(T115):DG(S5) DG(T116):DC(S4) DC(T117):DG(S3) DC(T118):DG(S2) chainQ (174) VAL283 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 chainR ( 10) ASN167 0 0 0 0 0 0 5 7 0 0 0 0 0 0 0 0 0 ( 12) VAL169 0 0 0 0 0 2 6 0 0 0 0 0 0 0 0 0 0 ( 40) PHE197 0 0 0 4 11 0 0 0 0 0 0 0 0 0 0 0 0 ( 55) LEU212 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 ( 57) PHE214 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 ( 63) VAL220 0 0 0 0 1 4 0 0 0 0 0 0 0 0 0 0 0 ( 65) THR222 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 (100) ASN257 0 0 0 0 0 0 4 5 0 0 0 0 0 0 0 0 0 (102) VAL259 0 0 0 0 0 0 0 5 2 0 0 0 0 0 0 0 0 (131) PHE288 0 0 0 0 0 0 0 0 0 19 6 0 0 0 0 0 0 (132) PRO289 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 (146) LEU303 0 0 0 0 0 0 0 0 3 3 0 0 0 0 0 0 0 (148) PHE305 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 (154) VAL311 0 0 0 0 0 0 0 0 6 1 0 0 0 0 0 0 0 (156) THR313 0 0 0 0 0 0 0 7 3 0 0 0 0 0 0 0 0 prot.sequence sdrammnafkeittmadrinlprnivdrtnnlfkqvyeqkslkgrandaiasaclyiacrqegvprtfkeicavsriskkeigrcfklilkaletsvdlittgdfmsrfcsnlclpkqvqmaathiarkaveldlvpgrspisvaaaaiymasqasaekrtqkeigdiagvadVtirqsyrliyprapdlfptdfkfdtpvdklpql/gsgivpqlqNiVstvnlgckldlktialrarnaeynpkrFaavimrireprttaLiFssgkmVcTgakseeqsrlaarkyarvvqklgfpakfldfkiqNmVgscdvkfpirleglvlthqqfssyepelFPgliyrmikprivlLiFvsgkvVlTgakvraeiyeafeniypilkgfrk >1ca5_A:Chromo_domain-like; title=INTERCALATION SITE OF HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SSO7D/SAC7D BOUND TO DNA organism=SULFOLOBUS ACIDOCALDARIUS DNA sequence DG(B101):DC(C116) DT(B102):DA(C115) DG(B103):DC(C114) DA(B104):DT(C113) DT(B105):DA(C112) DC(B106):DG(C111) DA(B107):DT(C110) DC(B108):DG(C109) chainA ( 7) TYR8 0 0 0 5 0 0 0 0 ( 23) TRP24 0 0 11 4 0 0 0 0 ( 25) VAL26 0 4 14 0 0 0 0 0 ( 28) MET29 0 16 10 0 0 0 0 0 ( 30) SER31 0 0 5 0 0 0 0 0 ( 41) ARG42 0 0 0 1 13 8 0 0 ( 43) ALA44 0 0 1 0 0 0 0 0 prot.sequence vkvkfkYkgeekevdtskikkvWrVgkMvSftyddngktgRgAvsekdapkelldmlaraerekk >1ca6_A:Chromo_domain-like; title=INTERCALATION SITE OF HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SSO7D/SAC7D BOUND TO DNA organism=SULFOLOBUS ACIDOCALDARIUS DNA sequence DG(B101):DC(C116) DT(B102):DG(C115) DG(B103):DC(C114) DA(B104):DT(C113) DT(B105):DA(C112) DC(B106):DG(C111) DG(B107):DT(C110) DC(B108):DG(C109) chainA ( 8) TYR8 0 0 0 1 0 0 0 0 ( 24) TRP24 0 0 11 3 0 0 0 0 ( 26) VAL26 0 6 6 0 0 0 0 0 ( 29) MET29 0 18 11 0 0 0 0 0 ( 31) SER31 0 0 4 0 0 0 0 0 ( 42) ARG42 0 0 0 1 6 8 0 0 ( 44) ALA44 0 0 1 0 0 0 0 0 prot.sequence mvkvkfkYkgeekevdtskikkvWrVgkMvSftyddngktgRgAvsekdapkelldmlaraerekk >1cez_A:DNA/RNA_polymerases; title=CRYSTAL STRUCTURE OF A T7 RNA POLYMERASE-T7 PROMOTER COMPLEX organism=Enterobacteria phage T7 DNA sequence DG(T5):DC(N113) DT(T6):DA(N112) DG(T7):DC(N111) DA(T8):DT(N110) DG(T9):DC(N109) DT(T10):DA(N108) DC(T11):DG(N107) DG(T12):DC(N106) DT(T13):DA(N105) DA(T14):DT(N104) DT(T15):DA(N103) DT(T16):DA(N102) DA(T17):DT(N101) chainA ( 75) ARG96 0 0 0 0 0 0 0 0 0 0 7 12 14 ( 77) LYS98 0 0 0 0 0 0 0 1 8 2 0 0 0 (210) ARG231 0 1 0 0 0 0 0 0 0 0 0 0 0 (216) VAL237 20 0 0 0 0 0 0 0 0 0 0 0 0 (219) ASP240 9 0 0 0 0 0 0 0 0 0 0 0 0 (725) ARG746 0 15 10 0 0 0 0 0 0 0 0 0 0 (727) ASN748 0 0 0 0 0 1 8 1 0 0 0 0 0 (735) ARG756 0 0 0 11 14 8 0 0 0 0 0 0 0 (737) GLN758 0 0 10 10 0 0 0 0 0 0 0 0 0 (739) THR760 0 1 0 0 0 0 0 0 0 0 0 0 0 prot.sequence iakndfsdielaaipfntladhygerlareqlalehesyemgearfrkmfplittllpkmiarindwfeevkakRgKrptafqflqeikpeavayitikttlacltsadnttvqavasaigraiedearfgrirdleakhfkknveeqlnkrvghvykkafmqvveadmlskgllggeawsswhkedsihvgvrciemliestgmvslhRqnagvVgqDsetielapeyaeaiatragalagispmfqpcvvppkpwtgitgggywangrrplalvrthskkalmryedvympevykainiaqntawkinkkvlavanvitkwkhcpvedipaiereelpmkpedidmnpealtawkraaaavyrkdkarksrrislefmleqankfanhkaiwfpynmdwrgrvyavsmfnpqgndmtkglltlakgkpigkegyywlkihgancagvdkvpfperikfieenhenimacaksplentwwaeqdspfcflafcfeyagvqhhglsyncslplafdgscsgiqhfsamlrdevggravnllpsetvqdiygivakkvneilqadaingtdnevvtvtdentgeisekvklgtkalagqwlaygvtrsvtkrsvmtlaygskefgfrqqvledtiqpaidsgkglmftqpnqaagymakliwesvsvtvvaaveamnwlksaakllaaevkdkktgeilrkrcavhwvtpdgfpvwqeykkpiqtRlNlmflgqfRlQpTintnkdseidahkqesgiapnfvhsqdgshlrktvvwahekygiesfalihdsfgtipadaanlfkavretmvdtyescdvladfydqfadqlhesqldkmpalpakgnlnlrdilesdfafa >1cf7_AB: title=STRUCTURAL BASIS OF DNA RECOGNITION BY THE HETERODIMERIC CELL CYCLE TRANSCRIPTION FACTOR E2F-DP organism=HOMO SAPIENS DNA sequence DT(C501):DA(D615) DT(C502):DA(D614) DT(C503):DA(D613) DT(C504):DA(D612) DC(C505):DG(D611) DG(C506):DC(D610) DC(C507):DG(D609) DG(C508):DC(D608) DC(C509):DG(D607) DG(C510):DC(D606) DG(C511):DC(D605) DT(C512):DA(D604) DT(C513):DA(D603) DT(C514):DA(D602) DT(C515):DA(D601) chainA ( 2) ARG17 0 0 1 4 6 6 0 0 0 0 0 0 0 0 0 ( 41) ARG56 0 0 0 0 0 0 0 14 13 11 0 0 0 0 0 ( 42) ARG57 0 0 0 0 0 0 13 10 0 0 0 0 0 0 0 ( 44) TYR59 0 0 0 0 0 0 0 0 0 6 3 0 0 0 0 chainB ( 51) ASN118 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 54) ARG121 0 0 0 0 15 13 5 0 0 0 0 0 0 0 0 ( 55) ARG122 0 0 0 0 0 0 8 9 0 0 0 0 0 0 0 ( 57) TYR124 0 0 0 5 6 0 0 0 0 0 0 0 0 0 0 prot.sequence sRhekslgllttkfvsllqeakdgvldlklaadtlavrqkRRiYditnvlegigliekksknsiqwk/gkglrhfsmkvcekvqrkgttsynevadelvseftnsnnhlaadsaydqkNirRRvYdalnvlmamniiskekkeikwiglp >1cit_A:Glucocorticoid_receptor-like_DNA-binding_domain; title=DNA-BINDING MECHANISM OF THE MONOMERIC ORPHAN NUCLEAR RECEPTOR NGFI-B organism=Rattus norvegicus DNA sequence DC(C419):DG(B417) DG(C420):DC(B416) DC(C421):DG(B415) DA(C422):DT(B414) DT(C423):DA(B413) DG(C424):DC(B412) DA(C425):DT(B411) DC(C426):DG(B410) DC(C427):DG(B409) DT(C428):DA(B408) DT(C429):DA(B407) DT(C430):DA(B406) DT(C431):DA(B405) DC(C432):DG(B404) DG(C433):DC(B403) DG(C434):DC(B402) chainA ( 12) CYS241 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 21) GLU250 0 0 0 0 0 0 7 9 0 0 0 0 0 0 0 0 ( 24) LYS253 0 0 0 0 0 0 0 1 8 0 0 0 0 0 0 0 ( 28) LYS257 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 29) ARG258 0 0 0 0 10 6 0 0 0 0 0 0 0 0 0 0 ( 82) ARG311 0 0 0 0 0 0 0 0 11 12 1 0 0 0 0 0 ( 84) ARG313 0 0 0 0 0 0 0 0 0 0 0 8 16 3 0 0 prot.sequence grcavcgdnasCqhygvrtcEgcKgffKRtvqksakyiclankdcpvdkrrrnrcqfcrfqkclavgmvkevvrtdslkgrRgRlpskp >1cjg_A:lambda_repressor-like_DNA-binding_domains; title=NMR STRUCTURE OF LAC REPRESSOR HP62-DNA COMPLEX organism=ESCHERICHIA COLI DNA sequence DG(D1):DC(C22) DA(D2):DT(C21) DA(D3):DT(C20) DT(D4):DA(C19) DT(D5):DA(C18) DG(D6):DC(C17) DT(D7):DA(C16) DG(D8):DC(C15) DA(D9):DT(C14) DG(D10):DC(C13) DC(D11):DG(C12) DG(D12):DC(C11) DC(D13):DG(C10) DT(D14):DA(C9) DC(D15):DG(C8) DA(D16):DT(C7) DC(D17):DG(C6) DA(D18):DT(C5) DA(D19):DT(C4) DT(D20):DA(C3) DT(D21):DA(C2) DC(D22):DG(C1) chainA ( 6) LEU6 0 0 0 0 0 0 0 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 ( 7) TYR7 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 ( 17) TYR17 0 0 0 0 0 0 0 0 0 0 0 0 0 3 1 1 0 0 0 0 0 0 ( 18) GLN18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 5 1 0 0 0 0 0 ( 29) HIS29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 0 ( 53) ALA53 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 ( 56) LEU56 0 0 0 0 0 0 0 0 0 0 3 5 0 0 0 0 0 0 0 0 0 0 ( 57) ALA57 0 0 0 0 0 0 0 0 0 0 0 3 3 1 0 0 0 0 0 0 0 0 prot.sequence mkpvtLYdvaeyagvsYQtvsrvvnqasHvsaktrekveaamaelnyipnrvAqqLAgkqsl >1cjg_AB: title=NMR STRUCTURE OF LAC REPRESSOR HP62-DNA COMPLEX organism=ESCHERICHIA COLI DNA sequence DG(D1):DC(C22) DA(D2):DT(C21) DA(D3):DT(C20) DT(D4):DA(C19) DT(D5):DA(C18) DG(D6):DC(C17) DT(D7):DA(C16) DG(D8):DC(C15) DA(D9):DT(C14) DG(D10):DC(C13) DC(D11):DG(C12) DG(D12):DC(C11) DC(D13):DG(C10) DT(D14):DA(C9) DC(D15):DG(C8) DA(D16):DT(C7) DC(D17):DG(C6) DA(D18):DT(C5) DA(D19):DT(C4) DT(D20):DA(C3) DT(D21):DA(C2) DC(D22):DG(C1) chainA ( 6) LEU6 0 0 0 0 0 0 0 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 ( 7) TYR7 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 ( 17) TYR17 0 0 0 0 0 0 0 0 0 0 0 0 0 3 1 1 0 0 0 0 0 0 ( 18) GLN18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 5 1 0 0 0 0 0 ( 29) HIS29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 0 ( 53) ALA53 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 ( 56) LEU56 0 0 0 0 0 0 0 0 0 0 3 5 0 0 0 0 0 0 0 0 0 0 ( 57) ALA57 0 0 0 0 0 0 0 0 0 0 0 3 3 1 0 0 0 0 0 0 0 0 chainB ( 6) LEU6 0 0 0 0 0 0 0 0 1 4 0 0 0 0 0 0 0 0 0 0 0 0 ( 7) TYR7 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 ( 17) TYR17 0 0 0 0 0 0 1 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 18) GLN18 0 0 0 0 0 2 5 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) HIS29 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 53) ALA53 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 ( 56) LEU56 0 0 0 0 0 0 0 0 0 0 6 3 0 0 0 0 0 0 0 0 0 0 ( 57) ALA57 0 0 0 0 0 0 0 0 1 3 2 0 0 0 0 0 0 0 0 0 0 0 prot.sequence mkpvtLYdvaeyagvsYQtvsrvvnqasHvsaktrekveaamaelnyipnrvAqqLAgkqsl/mkpvtLYdvaeyagvsYQtvsrvvnqasHvsaktrekveaamaelnyipnrvAqqLAgkqsl >1ckq_A:Restriction_endonuclease-like; title=PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAATTCGCG) COMPLEX organism=ESCHERICHIA COLI DNA sequence DT(B1) DC(B2) DG(B3) DC(B4) DG(B5) DA(B6) DA(B7) DT(B8) DT(B9) DC(B10) DG(B11) DC(B12) DG(B13) chainA ( 99) GLN115 0 0 0 0 0 0 0 4 0 0 0 0 0 (121) MET137 0 0 0 0 0 0 0 0 2 1 0 0 0 (122) ALA138 0 0 0 0 0 0 0 0 0 3 1 0 0 (125) ASN141 0 0 0 0 0 0 0 3 0 0 0 0 0 (126) ALA142 0 0 0 0 0 0 6 5 0 0 0 0 0 (129) ARG145 0 0 0 0 0 5 11 0 0 0 0 0 0 prot.sequence sqgvigifgdyakahdlavgevsklvkkalsneypqlsfryrdsikkteinealkkidpdlggtlfvsnssikpdggivevkddygewrvvlvaeakhQgkdiinirngllvgkrgdqdlMAagNAieRshkniseianfmlseshfpyvlflegsnfltenisitrpdgrvvnleynsgilnrldrltaanygmpinsnlcinkfvnhkdksimlqaasiytqgdgrewdskimfeimfdisttslrvlgrdlfeqltsk >1clq_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=CRYSTAL STRUCTURE OF A REPLICATION FORK DNA POLYMERASE EDITING COMPLEX AT 2.7 A RESOLUTION organism=Enterobacteria phage RB69 DNA sequence DA(D12):DT(E12) DG(D11):DC(E11) DT(D10):DA(E10) DA(D9):DT(E9) DG(D8):DC(E8) DT(D7):DA(E7) DT(D6):DA(E6) DC(D5):DG(E5) DC(D4):DG(E4) DG(D3):DG(E2) chainA (217) ASN217 0 0 0 0 0 0 0 0 0 5 (220) SER220 0 0 0 0 0 0 0 0 0 7 (255) ASN255 0 0 0 0 0 0 0 4 0 0 (260) ARG260 0 0 0 0 0 0 0 0 0 15 prot.sequence mkefyltveqigdsiferyidsngrertreveykpslfahcpesqatkyfdiygkpctrklfanmrdasqwikrmediglealgmddfklaylsdtynyeikydhtkirvanfdievtspdgfpepsqakhpidaithydsiddrfyvfdllnspygnveewsieiaaklqeqggdevpseiidkiiympfdnekellmeylnfwqqktpviltgwNveSfdipyvynriknifgestakrlsphrktrvkvieNmygsReiitlfgisvldyidlykkfsftnqpsysldyisefelnvgklkydgpisklresnhqryisyniidvyrvlqidakrqfinlsldmgyyakiqiqsvfspiktwdaiifnslkeqnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiagtfkvaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlaaqrngeiikealhnpnlsvdepldvdyrfdfsdeikekikklsakslnemlfraqrtevagmtaqinrkllinslygalgnvwfryydlrnataittfgqmalqwierkvneylnevcgtegeafvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarermepaidrgfremceymnnkqhlmfmdreaiagpplgskgiggfwtgkkryalnvwdmegtryaepklkimgletqksstpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisiasvssanniakydvggfpgpkcpfhirgiltynraikgnidapqvvegekvyvlplregnpfgdkciawpsgteitdlikddvlhwmdytvllektfikplegftsaakldyekkaslfdmfdf >1cma_A:Ribbon-helix-helix; title=MET REPRESSOR/DNA COMPLEX + S-ADENOSYL-METHIONINE organism=ESCHERICHIA COLI DNA sequence DT(C2):DA(D19) DA(C3):DT(D18) DG(C4):DC(D17) DA(C5):DT(D16) DC(C6):DG(D15) DG(C7):DC(D14) DT(C8):DA(D13) DC(C9):DG(D12) DT(C10):DA(D11) chainA ( 23) LYS23 0 0 0 0 0 0 0 9 7 ( 25) THR25 0 0 2 6 3 0 0 0 0 prot.sequence aewsgeyispyaehgkkseqvkKiTvsiplkvlkiltdertrrqvnnlrhatnsellceaflhaftgqplpddadlrkersdeipeaakeimremginpetwey >1cma_AB: title=MET REPRESSOR/DNA COMPLEX + S-ADENOSYL-METHIONINE organism=ESCHERICHIA COLI DNA sequence DA(D11):DT(C10) DG(D12):DC(C9) DA(D13):DT(C8) DC(D14):DG(C7) DG(D15):DC(C6) DT(D16):DA(C5) DC(D17):DG(C4) DT(D18):DA(C3) DA(D19):DT(C2) chainA ( 23) LYS23 7 9 0 0 0 0 0 0 0 ( 25) THR25 0 0 0 0 3 6 2 0 0 chainB ( 23) LYS23 0 0 0 0 0 1 7 3 0 ( 25) THR25 0 3 6 1 0 0 0 0 0 prot.sequence aewsgeyispyaehgkkseqvkKiTvsiplkvlkiltdertrrqvnnlrhatnsellceaflhaftgqplpddadlrkersdeipeaakeimremginpetwey/aewsgeyispyaehgkkseqvkKiTvsiplkvlkiltdertrrqvnnlrhatnsellceaflhaftgqplpddadlrkersdeipeaakeimremginpetwey >1co0_AB: title=NMR STUDY OF TRP REPRESSOR-MTR OPERATOR DNA COMPLEX organism=ESCHERICHIA COLI DNA sequence DT(E1):DA(F20) DG(E2):DC(F19) DT(E3):DA(F18) DA(E4):DT(F17) DC(E5):DG(F16) DT(E6):DA(F15) DC(E7):DG(F14) DG(E8):DC(F13) DT(E9):DA(F12) DG(E10):DC(F11) DT(E11):DA(F10) DA(E12):DT(F9) DC(E13):DG(F8) DT(E14):DA(F7) DG(E15):DC(F6) DG(E16):DC(F5) DT(E17):DA(F4) DA(E18):DT(F3) DC(E19):DG(F2) DA(E20):DT(F1) chainA ( 66) ARG69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 19 21 0 ( 69) LYS72 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 4 12 0 0 ( 74) ALA77 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 ( 76) ILE79 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25 11 1 0 0 0 ( 77) ALA80 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3 1 0 0 0 0 ( 78) THR81 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 ( 79) ILE82 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 ( 80) THR83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 7 0 0 0 ( 81) ARG84 0 0 0 0 0 0 0 0 0 0 0 0 6 1 0 0 0 0 0 0 chainB ( 76) ILE79 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 77) ALA80 0 0 0 0 0 4 8 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 80) THR83 0 0 0 0 10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 81) ARG84 0 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence qspysaamaeqrhqewlrfvdllknayqndlhlpllnlmltpderealgtrvriveellrgemsqRelKnelgAgIATITRgsnslkaapvelrqwleevllksd/qspysaamaeqrhqewlrfvdllknayqndlhlpllnlmltpderealgtrvriveellrgemsqrelknelgagIAtiTRgsnslkaapvelrqwleevllksd >1cqt_AI: title=CRYSTAL STRUCTURE OF A TERNARY COMPLEX CONTAINING AN OCA-B PEPTIDE, THE OCT-1 POU DOMAIN, AND AN OCTAMER ELEMENT organism=HOMO SAPIENS DNA sequence DG(M202):DC(N230) DT(M203):DA(N229) DA(M204):DT(N228) DT(M205):DA(N227) DG(M206):DC(N226) DC(M207):DG(N225) DA(M208):DT(N224) DA(M209):DT(N223) DA(M210):DT(N222) DT(M211):DA(N221) DA(M212):DT(N220) DA(M213):DT(N219) DG(M214):DC(N218) DG(M215):DC(N217) chainA ( 42) SER43 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 43) GLN44 0 11 10 0 0 0 0 0 0 0 0 0 0 0 ( 44) THR45 0 0 0 8 5 5 0 0 0 0 0 0 0 0 ( 47) SER48 0 0 1 2 0 0 0 0 0 0 0 0 0 0 ( 48) ARG49 0 0 0 1 2 17 8 0 0 0 0 0 0 0 ( 54) LEU55 0 0 0 0 0 0 1 0 0 0 0 0 0 0 ( 58) ASN59 0 0 0 0 0 0 1 0 0 0 0 0 0 0 ( 75) ARG102 0 0 0 0 0 0 0 2 1 0 0 0 0 0 ( 78) ARG105 0 0 0 0 0 18 12 6 0 0 0 0 0 0 (120) VAL147 0 0 0 0 0 0 0 0 2 1 0 0 0 0 (123) CYS150 0 0 0 0 0 0 0 0 0 0 0 1 0 0 (124) ASN151 0 0 0 0 0 0 0 6 10 1 0 0 0 0 (127) GLN154 0 0 0 0 0 0 0 0 1 10 14 0 0 0 chainI ( 4) TYR303 0 0 0 0 1 4 0 0 0 0 0 0 0 0 ( 7) VAL306 0 0 0 0 0 0 6 5 3 0 0 0 0 0 ( 9) VAL308 0 0 0 0 0 0 1 1 0 0 0 0 0 0 prot.sequence epsdleeleqfaktfkqrriklgftqgdvglamgklygndfSQTtiSRfealnLsfkNmcklkpllekwlndaeRkkRtsietnirvaleksflenqkptseeitmiadqlnmekevirVwfCNrrQkekrinp/arpYqgVrVkepvkellrrkrg >1cqt_BJ: title=CRYSTAL STRUCTURE OF A TERNARY COMPLEX CONTAINING AN OCA-B PEPTIDE, THE OCT-1 POU DOMAIN, AND AN OCTAMER ELEMENT organism=HOMO SAPIENS DNA sequence DC(P717):DG(O715) DC(P718):DG(O714) DT(P719):DA(O713) DT(P720):DA(O712) DA(P721):DT(O711) DT(P722):DA(O710) DT(P723):DA(O709) DT(P724):DA(O708) DG(P725):DC(O707) DC(P726):DG(O706) DA(P727):DT(O705) DT(P728):DA(O704) DA(P729):DT(O703) DC(P730):DG(O702) chainB ( 38) SER543 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 39) GLN544 0 0 0 0 0 0 0 0 0 0 3 14 11 0 ( 40) THR545 0 0 0 0 0 0 0 0 10 5 3 0 0 0 ( 41) THR546 0 0 0 0 0 0 0 1 0 0 0 0 0 0 ( 43) SER548 0 0 0 0 0 0 0 0 0 0 1 1 0 0 ( 44) ARG549 0 0 0 0 0 0 0 10 12 1 0 0 0 0 ( 50) LEU555 0 0 0 0 0 0 0 1 0 0 0 0 0 0 ( 54) ASN559 0 0 0 0 0 0 0 1 0 0 0 0 0 0 ( 74) ARG605 0 0 0 0 0 0 7 4 14 1 0 0 0 0 (115) VAL647 0 0 0 0 0 2 0 0 0 0 0 0 0 0 (118) CYS650 0 0 1 0 0 0 0 0 0 0 0 0 0 0 (119) ASN651 0 0 0 0 3 8 4 0 0 0 0 0 0 0 (122) GLN654 0 0 0 10 13 3 0 0 0 0 0 0 0 0 chainJ ( 7) VAL806 0 0 0 0 0 5 7 8 0 0 0 0 0 0 prot.sequence dleeleqfaktfkqrriklgftqgdvglamgklyndfSQTTiSRfealnLsfkNmcklkpllekwlndaerkkRtsietnirvaleksflenqktseeitmiadqlnmekevirVwfCNrrQkekrinp/arpyqgVrvkepvkellrrkrgh >1cyq_A:His-Me_finger_endonucleases; title=INTRON ENCODED HOMING ENDONUCLEASE I-PPOI (H98A)/DNA HOMING SITE COMPLEX organism=Physarum polycephalum DNA sequence DT(D502):DA(C421) DG(D503):DC(C420) DA(D504):DT(C419) DC(D505):DG(C418) DT(D506):DA(C417) DC(D507):DG(C416) DT(D508):DA(C415) DC(D509):DG(C414) DT(D510):DA(C413) DT(D511):DA(C412) DA(D512):DT(C411) DA(D513):DT(C410) DG(D514):DC(C409) DA(D515):DT(C408) DG(D516):DC(C407) DA(D517):DT(C406) DG(D518):DC(C405) DT(D519):DA(C404) DC(D520):DG(C403) DA(D521):DT(C402) chainA ( 54) ALA55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 ( 56) ASN57 0 0 0 0 0 0 0 0 0 0 0 0 0 2 7 5 0 0 0 0 ( 60) ARG61 0 0 0 0 0 0 0 0 0 0 0 0 11 11 0 0 0 0 0 0 ( 62) GLN63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 10 0 0 0 0 ( 64) LYS65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 6 5 ( 66) THR67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 ( 71) VAL72 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 ( 73) ARG74 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 10 0 0 0 (115) LEU116 0 0 0 0 0 0 0 0 0 0 2 6 0 0 0 0 0 0 0 0 (119) LYS120 0 0 0 0 0 0 0 0 0 2 5 1 0 0 0 0 0 0 0 0 prot.sequence altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctasalchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv >1cyq_AB:His-Me_finger_endonucleases; title=INTRON ENCODED HOMING ENDONUCLEASE I-PPOI (H98A)/DNA HOMING SITE COMPLEX organism=Physarum polycephalum DNA sequence DT(C402):DA(D521) DG(C403):DC(D520) DA(C404):DT(D519) DC(C405):DG(D518) DT(C406):DA(D517) DC(C407):DG(D516) DT(C408):DA(D515) DC(C409):DG(D514) DT(C410):DA(D513) DT(C411):DA(D512) DA(C412):DT(D511) DA(C413):DT(D510) DG(C414):DC(D509) DA(C415):DT(D508) DG(C416):DC(D507) DA(C417):DT(D506) DG(C418):DC(D505) DT(C419):DA(D504) DC(C420):DG(D503) DA(C421):DT(D502) chainA ( 54) ALA55 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 56) ASN57 0 0 0 0 5 7 2 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 60) ARG61 0 0 0 0 0 0 11 11 0 0 0 0 0 0 0 0 0 0 0 0 ( 62) GLN63 0 0 0 0 10 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 64) LYS65 5 6 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 66) THR67 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 71) VAL72 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 73) ARG74 0 0 0 10 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (115) LEU116 0 0 0 0 0 0 0 0 6 2 0 0 0 0 0 0 0 0 0 0 (119) LYS120 0 0 0 0 0 0 0 0 1 5 2 0 0 0 0 0 0 0 0 0 chainB ( 54) ALA255 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 ( 56) ASN257 0 0 0 0 0 0 0 0 0 0 0 0 0 2 7 5 0 0 0 0 ( 60) ARG261 0 0 0 0 0 0 0 0 0 0 0 0 6 10 0 0 0 0 0 0 ( 62) GLN263 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 10 0 0 0 0 ( 64) LYS265 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 6 7 ( 66) THR267 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 ( 73) ARG274 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 10 0 0 0 (115) LEU316 0 0 0 0 0 0 0 0 0 0 1 6 0 0 0 0 0 0 0 0 (119) LYS320 0 0 0 0 0 0 0 0 0 1 3 2 0 0 0 0 0 0 0 0 prot.sequence altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctasalchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv/altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvvhRwgshtvpfllepdningktctasalchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv >1cz0_AB:His-Me_finger_endonucleases; title=INTRON ENCODED HOMING ENDONUCLEASE I-PPOI/DNA COMPLEX LACKING CATALYTIC METAL ION organism=Physarum polycephalum DNA sequence DT(C402):DA(D521) DG(C403):DC(D520) DA(C404):DT(D519) DC(C405):DG(D518) DT(C406):DA(D517) DC(C407):DG(D516) DT(C408):DA(D515) DC(C409):DG(D514) DT(C410):DA(D513) DT(C411):DA(D512) DA(C412):DT(D511) DA(C413):DT(D510) DG(C414):DC(D509) DA(C415):DT(D508) DG(C416):DC(D507) DA(C417):DT(D506) DG(C418):DC(D505) DT(C419):DA(D504) DC(C420):DG(D503) DA(C421):DT(D502) chainA ( 54) ALA55 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 56) ASN57 0 0 0 0 4 7 4 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 60) ARG61 0 0 0 0 0 0 10 12 0 0 0 0 0 0 0 0 0 0 0 0 ( 62) GLN63 0 0 0 0 10 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 64) LYS65 5 8 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 66) THR67 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 71) VAL72 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 73) ARG74 0 0 0 10 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (115) LEU116 0 0 0 0 0 0 0 0 6 2 0 0 0 0 0 0 0 0 0 0 (119) LYS120 0 0 0 0 0 0 0 0 2 3 1 0 0 0 0 0 0 0 0 0 chainB ( 54) ALA255 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 ( 56) ASN257 0 0 0 0 0 0 0 0 0 0 0 0 0 3 7 4 0 0 0 0 ( 60) ARG261 0 0 0 0 0 0 0 0 0 0 0 0 7 10 0 0 0 0 0 0 ( 62) GLN263 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 11 0 0 0 0 ( 64) LYS265 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 6 5 ( 66) THR267 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 ( 73) ARG274 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 11 0 0 0 (115) LEU316 0 0 0 0 0 0 0 0 0 0 1 6 0 0 0 0 0 0 0 0 (119) LYS320 0 0 0 0 0 0 0 0 0 1 3 1 0 0 0 0 0 0 0 0 prot.sequence altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv/altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvvhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv >1cz0_B:His-Me_finger_endonucleases; title=INTRON ENCODED HOMING ENDONUCLEASE I-PPOI/DNA COMPLEX LACKING CATALYTIC METAL ION organism=Physarum polycephalum DNA sequence DT(D502):DA(C421) DG(D503):DC(C420) DA(D504):DT(C419) DC(D505):DG(C418) DT(D506):DA(C417) DC(D507):DG(C416) DT(D508):DA(C415) DC(D509):DG(C414) DT(D510):DA(C413) DT(D511):DA(C412) DA(D512):DT(C411) DA(D513):DT(C410) DG(D514):DC(C409) DA(D515):DT(C408) DG(D516):DC(C407) DA(D517):DT(C406) DG(D518):DC(C405) DT(D519):DA(C404) DC(D520):DG(C403) DA(D521):DT(C402) chainB ( 54) ALA255 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 56) ASN257 0 0 0 0 4 7 3 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 60) ARG261 0 0 0 0 0 0 10 7 0 0 0 0 0 0 0 0 0 0 0 0 ( 62) GLN263 0 0 0 0 11 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 64) LYS265 5 6 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 66) THR267 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 73) ARG274 0 0 0 11 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (115) LEU316 0 0 0 0 0 0 0 0 6 1 0 0 0 0 0 0 0 0 0 0 (119) LYS320 0 0 0 0 0 0 0 0 1 3 1 0 0 0 0 0 0 0 0 0 prot.sequence altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvvhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv >1d02_AB: title=CRYSTAL STRUCTURE OF MUNI RESTRICTION ENDONUCLEASE IN COMPLEX WITH COGNATE DNA organism=MYCOPLASMA DNA sequence DG(C1):DC(D10) DC(C2):DG(D9) DC(C3):DG(D8) DA(C4):DT(D7) DA(C5):DT(D6) DT(C6):DA(D5) DT(C7):DA(D4) DG(C8):DC(D3) DG(C9):DC(D2) DC(C10):DG(D1) chainA ( 40) LYS45 0 0 0 0 0 0 0 0 0 2 ( 97) GLN102 0 0 0 0 4 0 0 0 0 0 (110) ARG115 0 7 17 13 0 0 0 0 0 0 (112) ASN117 0 0 7 10 7 0 0 0 0 0 (113) ALA118 0 0 0 0 5 6 0 0 0 0 (116) ARG121 0 0 0 0 0 10 4 0 0 0 chainB (100) GLN102 0 0 0 0 0 4 0 0 0 0 (113) ARG115 0 0 0 0 0 0 12 17 7 0 (115) ASN117 0 0 0 0 0 7 10 7 0 0 (116) ALA118 0 0 0 0 6 5 0 0 0 0 (119) ARG121 0 0 0 5 10 0 0 0 0 0 prot.sequence lsgrlnwqalaglkasgaeqnlynvfnavfegtkyvlyeKpkhlknlyaqvvlpddvikeifnplidlsttqwgvspafaientethkilfgeikrQdgwvegkdpsagRgNAheRscklftpgllkayrtiggindeeilpfwvvfegditrdpkrvreitfwydhyqdnyfmwrpnesgeklvqhfneklkkyld/kselsgrlnwqalaglkasgaeqnlynvfnavfegtkyvlyeKpkhlknlyaqvvlpddvikeifnplidlsttqwgvspafaientethkilfgeikrQdgwvegkdpsagRgNAheRscklftpgllkayrtiggindeeilpfwvvfegditrdpkrvreitfwydhyqdnyfmwrpnesgeklvqhfneklkkyld >1d0e_A:DNA/RNA_polymerases; title=CRYSTAL STRUCTURES OF THE N-TERMINAL FRAGMENT FROM MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE COMPLEXED WITH NUCLEIC ACID: FUNCTIONAL IMPLICATIONS FOR TEMPLATE-PRIMER BINDING TO THE FINGERS DOMAIN organism=Moloney murine leukemia virus DNA sequence DC(E4):DG(F11) DA(E5):DT(F10) DT(E6):DA(F9) DG(E7):DC(F8) DC(E8):DG(F7) DA(E9):DT(F6) DT(E10):DA(F5) DG(E11):DC(F4) chainA ( 80) LEU99 9 0 0 0 0 0 0 0 ( 82) VAL101 1 0 0 0 0 0 0 0 ( 93) VAL112 5 0 0 0 0 0 0 0 ( 97) ARG116 10 9 0 0 0 0 0 0 prot.sequence gshmtwlsdfpqawaetggmglavrqapliiplkatstpvsikqypmsqearlgikphiqrlldqgilvpcqspwntplLpVkkpgtndyrpVqdlRevnkrvedihptvpnpynllsglppshqwytvldlkdaffclrlhptsqplfafewrdpemgisgqltwtrlpqgfknsptlfdealhrdladfriqhpdlillqyvddlllaatseldcqqgtrallqtlgnlgyrasakkaqicqkqvkylgyllkegqr >1d1u_A:DNA/RNA_polymerases; title=USE OF AN N-TERMINAL FRAGMENT FROM MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE TO FACILITATE CRYSTALLIZATION AND ANALYSIS OF A PSEUDO-16-MER DNA MOLECULE CONTAINING G-A MISPAIRS organism=Moloney murine leukemia virus DNA sequence DC(B1):DG(C16) DT(B2):DA(C15) DC(B3):DG(C14) DG(B4):DC(C13) DT(B5):DA(C12) DG(B6):DC(C11) chainA ( 41) TYR64 6 0 0 0 0 0 ( 76) LEU99 20 0 0 0 0 0 ( 91) ASP114 15 0 0 0 0 0 ( 93) ARG116 8 6 4 0 0 0 prot.sequence twlsdfpqawaetggmglavrqapliiplkatstpvsikqYpmsqearlgikphiqrlldqgilvpcqspwntplLpvkkpgtndyrpvqDlRevnkrvedihptvpnpynllsglppshqwytvldlkdaffclrlhptsqplfafewrdpemgisgqltwtrlpqgfknsptlfdealhrdladfriqhpdlillqyvddlllaatseldcqqgtrallqtlgnlgyrasakkaqicqkqvkylgyllkegqr >1d2i_A:Restriction_endonuclease-like; title=CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASE BGLII COMPLEXED WITH DNA 16-MER organism=BACILLUS SUBTILIS DNA sequence DT(D19):DA(C16) DT(D20):DA(C15) DA(D21):DT(C14) DT(D22):DA(C13) DA(D23):DT(C12) DG(D24):DC(C11) DA(D25):DT(C10) DT(D26):DA(C9) DC(D27):DG(C8) DT(D28):DA(C7) DA(D29):DT(C6) DT(D30):DA(C5) DA(D31):DT(C4) DA(D32):DT(C3) chainA ( 39) GLN39 0 0 0 0 3 0 0 0 0 0 0 0 0 0 ( 97) SER97 0 0 0 0 0 0 1 7 4 0 0 0 0 0 ( 98) ASN98 0 0 0 0 0 0 8 2 0 0 0 0 0 0 ( 99) TYR99 0 0 0 0 6 0 0 0 0 0 0 0 0 0 (101) PHE101 0 0 0 0 0 0 0 0 4 0 0 0 0 0 (139) SER139 0 0 0 0 0 0 4 0 0 0 0 0 0 0 (140) ASN140 0 0 1 10 9 3 0 0 0 0 0 0 0 0 (141) SER141 0 0 0 7 7 4 0 0 0 0 0 0 0 0 (142) SER142 0 0 0 0 0 0 1 0 0 0 0 0 0 0 (190) TYR190 0 0 0 0 0 0 1 3 9 0 0 0 0 0 prot.sequence mkiditdynhadeilnpqlwkeieetllkmplhvkasdQaskvgslifdpvgtnqyikdelvpkhwknnipipkrfdflgtdidfgkrdtlvevqfSNYpFllnntvrselfhksnmdideegmkvaiiitkghmfpaSNSSlyyeqaqnqlnslaeynvfdvpirlvgliedfetdidivsttyadkrYsRtitkrdtvkgkvidtntpntrrrkrgtivty >1d2i_AB: title=CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASE BGLII COMPLEXED WITH DNA 16-MER organism=BACILLUS SUBTILIS DNA sequence DT(C3):DA(D32) DT(C4):DA(D31) DA(C5):DT(D30) DT(C6):DA(D29) DA(C7):DT(D28) DG(C8):DC(D27) DA(C9):DT(D26) DT(C10):DA(D25) DC(C11):DG(D24) DT(C12):DA(D23) DA(C13):DT(D22) DT(C14):DA(D21) DA(C15):DT(D20) DA(C16):DT(D19) chainA ( 39) GLN39 0 0 0 0 0 0 0 0 0 3 0 0 0 0 ( 97) SER97 0 0 0 0 0 4 7 1 0 0 0 0 0 0 ( 98) ASN98 0 0 0 0 0 0 2 8 0 0 0 0 0 0 ( 99) TYR99 0 0 0 0 0 0 0 0 0 6 0 0 0 0 (101) PHE101 0 0 0 0 0 4 0 0 0 0 0 0 0 0 (139) SER139 0 0 0 0 0 0 0 4 0 0 0 0 0 0 (140) ASN140 0 0 0 0 0 0 0 0 3 9 10 1 0 0 (141) SER141 0 0 0 0 0 0 0 0 4 7 7 0 0 0 (142) SER142 0 0 0 0 0 0 0 1 0 0 0 0 0 0 (190) TYR190 0 0 0 0 0 9 3 1 0 0 0 0 0 0 chainB ( 39) GLN39 0 0 0 0 3 0 0 0 0 0 0 0 0 0 ( 97) SER97 0 0 0 0 0 0 1 7 4 0 0 0 0 0 ( 98) ASN98 0 0 0 0 0 0 8 2 0 0 0 0 0 0 ( 99) TYR99 0 0 0 0 6 0 0 0 0 0 0 0 0 0 (101) PHE101 0 0 0 0 0 0 0 0 4 0 0 0 0 0 (139) SER139 0 0 0 0 0 0 4 0 0 0 0 0 0 0 (140) ASN140 0 0 0 8 9 3 0 0 0 0 0 0 0 0 (141) SER141 0 0 0 6 7 4 0 0 0 0 0 0 0 0 (142) SER142 0 0 0 0 0 0 1 0 0 0 0 0 0 0 (190) TYR190 0 0 0 0 0 0 0 3 8 0 0 0 0 0 prot.sequence mkiditdynhadeilnpqlwkeieetllkmplhvkasdQaskvgslifdpvgtnqyikdelvpkhwknnipipkrfdflgtdidfgkrdtlvevqfSNYpFllnntvrselfhksnmdideegmkvaiiitkghmfpaSNSSlyyeqaqnqlnslaeynvfdvpirlvgliedfetdidivsttyadkrYsrtitkrdtvkgkvidtntpntrrrkrgtivty/mkiditdynhadeilnpqlwkeieetllkmplhvkasdQaskvgslifdpvgtnqyikdelvpkhwknnipipkrfdflgTdidfgkrdtlvevqfSNYpFllnntvrselfhksnmdideegmkvaiiitkghmfpaSNSSlyyeqaqnqlnslaeynvfdvpirlvgliedfetdidivsttyadkrYsRtitkrdtvkgkvidtntrkrgtivty >1d3u_A:TATA-box_binding_protein-like; title=TATA-BINDING PROTEIN/TRANSCRIPTION FACTOR (II)B/BRE+TATA-BOX COMPLEX FROM PYROCOCCUS WOESEI organism=PYROCOCCUS WOESEI DNA sequence DA(C1401):DT(D1448) DG(C1402):DC(D1447) DA(C1403):DT(D1446) DG(C1404):DC(D1445) DT(C1405):DA(D1444) DA(C1406):DT(D1443) DA(C1407):DT(D1442) DA(C1408):DT(D1441) DG(C1409):DC(D1440) DT(C1410):DA(D1439) DT(C1411):DA(D1438) DT(C1412):DA(D1437) DA(C1413):DT(D1436) DA(C1414):DT(D1435) DA(C1415):DT(D1434) DT(C1416):DA(D1433) DA(C1417):DT(D1432) DC(C1418):DG(D1431) DT(C1419):DA(D1430) DT(C1420):DA(D1429) DA(C1421):DT(D1428) DT(C1422):DA(D1427) DA(C1423):DT(D1426) chainA ( 13) ASN13 0 0 0 0 0 0 0 0 0 0 0 0 7 5 0 0 0 0 0 0 0 0 0 ( 15) VAL15 0 0 0 0 0 0 0 0 0 0 0 0 0 7 2 0 0 0 0 0 0 0 0 ( 43) PHE43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30 9 0 0 0 0 0 0 ( 44) PRO44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 ( 58) LEU58 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 0 0 0 0 ( 60) PHE60 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 ( 66) VAL66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 3 0 0 0 0 0 0 0 ( 68) THR68 0 0 0 0 0 0 0 0 0 0 0 0 0 3 2 0 0 0 0 0 0 0 0 (104) ASN104 0 0 0 0 0 0 0 0 0 0 0 0 6 6 0 0 0 0 0 0 0 0 0 (106) VAL106 0 0 0 0 0 0 0 0 0 0 0 2 6 0 0 0 0 0 0 0 0 0 0 (134) PHE134 0 0 0 0 0 0 0 0 0 5 13 0 0 0 0 0 0 0 0 0 0 0 0 (135) PRO135 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 (149) LEU149 0 0 0 0 0 0 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 0 (151) PHE151 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 (157) VAL157 0 0 0 0 0 0 0 0 0 0 5 4 0 0 0 0 0 0 0 0 0 0 0 (159) SER159 0 0 0 0 0 0 0 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 prot.sequence mvdmskvklrieNiVasvdlfaqldlekvldlcpnskynpeeFPgiichlddpkvalLiFssgklVvTgaksvqdieravaklaqklksigvkfkrapqidvqNmVfsgdigrefnldvvaltlpnceyepeqFPgviyrvkepksviLlFssgkiVcSgakseadaweavrkllreldky >1d3u_AB: title=TATA-BINDING PROTEIN/TRANSCRIPTION FACTOR (II)B/BRE+TATA-BOX COMPLEX FROM PYROCOCCUS WOESEI organism=PYROCOCCUS WOESEI DNA sequence DA(C1401):DT(D1448) DG(C1402):DC(D1447) DA(C1403):DT(D1446) DG(C1404):DC(D1445) DT(C1405):DA(D1444) DA(C1406):DT(D1443) DA(C1407):DT(D1442) DA(C1408):DT(D1441) DG(C1409):DC(D1440) DT(C1410):DA(D1439) DT(C1411):DA(D1438) DT(C1412):DA(D1437) DA(C1413):DT(D1436) DA(C1414):DT(D1435) DA(C1415):DT(D1434) DT(C1416):DA(D1433) DA(C1417):DT(D1432) DC(C1418):DG(D1431) DT(C1419):DA(D1430) DT(C1420):DA(D1429) DA(C1421):DT(D1428) DT(C1422):DA(D1427) DA(C1423):DT(D1426) chainA ( 13) ASN13 0 0 0 0 0 0 0 0 0 0 0 0 7 5 0 0 0 0 0 0 0 0 0 ( 15) VAL15 0 0 0 0 0 0 0 0 0 0 0 0 0 7 2 0 0 0 0 0 0 0 0 ( 43) PHE43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30 9 0 0 0 0 0 0 ( 44) PRO44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 ( 58) LEU58 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 0 0 0 0 ( 60) PHE60 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 ( 66) VAL66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 3 0 0 0 0 0 0 0 ( 68) THR68 0 0 0 0 0 0 0 0 0 0 0 0 0 3 2 0 0 0 0 0 0 0 0 (104) ASN104 0 0 0 0 0 0 0 0 0 0 0 0 6 6 0 0 0 0 0 0 0 0 0 (106) VAL106 0 0 0 0 0 0 0 0 0 0 0 2 6 0 0 0 0 0 0 0 0 0 0 (134) PHE134 0 0 0 0 0 0 0 0 0 5 13 0 0 0 0 0 0 0 0 0 0 0 0 (135) PRO135 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 (149) LEU149 0 0 0 0 0 0 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 0 (151) PHE151 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 (157) VAL157 0 0 0 0 0 0 0 0 0 0 5 4 0 0 0 0 0 0 0 0 0 0 0 (159) SER159 0 0 0 0 0 0 0 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 chainB (179) THR1278 0 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (181) VAL1280 0 0 0 1 4 5 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (182) THR1281 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (184) ARG1283 0 0 15 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (185) ASN1284 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence mvdmskvklrieNiVasvdlfaqldlekvldlcpnskynpeeFPgiichlddpkvalLiFssgklVvTgaksvqdieravaklaqklksigvkfkrapqidvqNmVfsgdigrefnldvvaltlpnceyepeqFPgviyrvkepksviLlFssgkiVcSgakseadaweavrkllreldky/mvsdaaernlafalseldritaqlklprhveeeaarlyreavrkglirgrsiesvmaacvyaacrllkvprtldeiadiarvdkkeigrsyrfiarnlnltpkklfvkptdyvnkfadelglsekvrrraieildeaykrgltsgkspaglvaaalyiasllegekrtqrevaevarvTeVTvRNrykelveklkikvpia >1d5y_AB: title=CRYSTAL STRUCTURE OF THE E. COLI ROB TRANSCRIPTION FACTOR IN COMPLEX WITH DNA organism=Escherichia coli DNA sequence DC(N2):DG(M21) DT(N3):DA(M20) DT(N4):DA(M19) DT(N5):DA(M18) DG(N6):DC(M17) DA(N7):DT(M16) DC(N8):DG(M15) DA(N9):DT(M14) DT(N10):DA(M13) DT(N11):DA(M12) DC(N12):DG(M11) DA(N13):DT(M10) DG(N14):DC(M9) DT(N15):DA(M8) DG(N16):DC(M7) DC(N17):DG(M6) DT(N18):DA(M5) DG(N19):DC(M4) DT(N20):DA(M3) DC(N21):DG(M2) chainA ( 32) SER34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 ( 34) TRP36 0 0 0 0 0 0 0 0 0 0 0 0 2 10 27 6 0 0 0 0 ( 35) HIS37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 ( 37) GLN39 0 0 0 0 0 0 0 0 0 0 0 0 6 4 0 0 0 0 0 0 ( 38) ARG40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 9 1 0 0 0 chainB ( 88) ARG90 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 prot.sequence qagiirdlliwleghldqplsldnvaakagySkWHlQRmfkdvtghaigayirarrlsksavalrltarpildialqyrfdsqqtftrafkkqfaqtpalyrrspewsafgirpplrlgeftmpehkfvtledtpligvtqsyscsleqisdfrhemryqfwhdflgnaptippvlyglnetrpsqdkddeqevfyttalaqdqadgyvltghpvmlqggeyvmftyeglgtgvqefiltvygtcmpmlnltrrkgqdieryypaeddrpinlrcellipirrklaaa/qagiirdlliwleghldqplsldnvaakagyskwhlqrmfkdvtghaigayirarrlsksavalrltarpildialqyrfdsqqtftRafkkqfaqtpalyrrspewsafgirpplrlgeftmpehkfvtledtpligvtqsyscsleqisdfrhemryqfwhdflgnaptippvlyglnetrpsqdkddeqevfyttalaqdqadgyvltghpvmlqggeyvmftyeglgtgvqefiltvygtcmpmlnltrrkgqdieryypaeddrpinlrcellipirrklaaa >1d5y_C:Probable_bacterial_effector-binding_domain;Homeodomain-like; title=CRYSTAL STRUCTURE OF THE E. COLI ROB TRANSCRIPTION FACTOR IN COMPLEX WITH DNA organism=Escherichia coli DNA sequence DG(O2):DC(P21) DA(O3):DT(P20) DC(O4):DG(P19) DA(O5):DT(P18) DG(O6):DC(P17) DC(O7):DG(P16) DA(O8):DT(P15) DC(O9):DG(P14) DT(O10):DA(P13) DG(O11):DC(P12) DA(O12):DT(P11) DA(O13):DT(P10) DT(O14):DA(P9) DG(O15):DC(P8) DT(O16):DA(P7) DC(O17):DG(P6) DA(O18):DT(P5) DA(O19):DT(P4) DA(O20):DT(P3) DG(O21):DC(P2) chainC ( 32) SER34 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 34) TRP36 0 0 0 0 9 20 9 5 0 0 0 0 0 0 0 0 0 0 0 0 ( 35) HIS37 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 37) GLN39 0 0 0 0 0 0 3 7 0 0 0 0 0 0 0 0 0 0 0 0 ( 38) ARG40 0 0 0 1 7 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence qagiirdlliwleghldqplsldnvaakagySkWHlQRmfkdvtghaigayirarrlsksavalrltarpildialqyrfdsqqtftrafkkqfaqtpalyrrspewsafgirpplrlgeftmpehkfvtledtpligvtqsyscsleqisdfrhemryqfwhdflgnaptippvlyglnetrpsqdkddeqevfyttalaqdqadgyvltghpvmlqggeyvmftyeglgtgvqefiltvygtcmpmlnltrrkgqdieryypaeddrpinlrcellipirrklaaa >1d5y_CD: title=CRYSTAL STRUCTURE OF THE E. COLI ROB TRANSCRIPTION FACTOR IN COMPLEX WITH DNA organism=Escherichia coli DNA sequence DC(P2):DG(O21) DT(P3):DA(O20) DT(P4):DA(O19) DT(P5):DA(O18) DG(P6):DC(O17) DA(P7):DT(O16) DC(P8):DG(O15) DA(P9):DT(O14) DT(P10):DA(O13) DT(P11):DA(O12) DC(P12):DG(O11) DA(P13):DT(O10) DG(P14):DC(O9) DT(P15):DA(O8) DG(P16):DC(O7) DC(P17):DG(O6) DT(P18):DA(O5) DG(P19):DC(O4) DT(P20):DA(O3) DC(P21):DG(O2) chainD chainC ( 32) SER34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 ( 34) TRP36 0 0 0 0 0 0 0 0 0 0 0 0 5 9 20 9 0 0 0 0 ( 35) HIS37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 ( 37) GLN39 0 0 0 0 0 0 0 0 0 0 0 0 7 3 0 0 0 0 0 0 ( 38) ARG40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 7 1 0 0 0 prot.sequence qagiirdlliwleghldqplsldnvaakagySkWHlQRmfkdvtghaigayirarrlsksavalrltarpildialqyrfdsqqtftrafkkqfaqtpalyrrspewsafgirpplrlgeftmpehkfvtledtpligvtqsyscsleqisdfrhemryqfwhdflgnaptippvlyglnetrpsqdkddeqevfyttalaqdqadgyvltghpvmlqggeyvmftyeglgtgvqefiltvygtcmpmlnltrrkgqdieryypaeddrpinlrcellipirrklaaa/qagiirdlliwleghldqplsldnvaakagySkWHlQRmfkdvtghaigayirarrlsksavalrltarpildialqyrfdsqqtftrafkkqfaqtpalyrrspewsafgirpplrlgeftmpehkfvtledtpligvtqsyscsleqisdfrhemryqfwhdflgnaptippvlyglnetrpsqdkddeqevfyttalaqdqadgyvltghpvmlqggeyvmftyeglgtgvqefiltvygtcmpmlnltrrkgqdieryypaeddrpinlrcellipirrklaaa >1d66_AB: title=DNA RECOGNITION BY GAL4: STRUCTURE OF A PROTEIN/DNA COMPLEX organism=Saccharomyces cerevisiae DNA sequence DC(E20):DG(D19) DC(E21):DG(D18) DG(E22):DC(D17) DG(E23):DC(D16) DA(E24):DT(D15) DG(E25):DC(D14) DG(E26):DC(D13) DA(E27):DT(D12) DC(E28):DG(D11) DT(E29):DA(D10) DG(E30):DC(D9) DT(E31):DA(D8) DC(E32):DG(D7) DC(E33):DG(D6) DT(E34):DA(D5) DC(E35):DG(D4) DC(E36):DG(D3) DG(E37):DC(D2) DG(E38):DC(D1) chainA ( 8) ARG15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 ( 11) LYS18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 16 15 11 0 ( 12) LEU19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 chainB ( 11) LYS18 0 21 14 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence eqacdicRlkKLkcskekpkcakclknnwecryspktkrspltrahltevesrlerl/eqacdicrlkKlkcskekpkcakclknnwecryspktkrspltrahltevesrlerl >1dc1_AB: title=RESTRICTION ENZYME BSOBI/DNA COMPLEX STRUCTURE: ENCIRCLEMENT OF THE DNA AND HISTIDINE-CATALYZED HYDROLYSIS WITHIN A CANONICAL RESTRICTION ENZYME FOLD organism=Geobacillus stearothermophilus DNA sequence DT(W2):DA(C12) DA(W3):DT(C11) DC(W4):DG(C10) DT(W5):DA(C9) DC(W6):DG(C8) DG(W7):DC(C7) DA(W8):DT(C6) DG(W9):DC(C5) DT(W10):DA(C4) DA(W11):DT(C3) DT(W12):DA(C2) chainA ( 77) LYS81 0 0 0 0 0 0 9 11 0 0 0 (127) ARG131 0 0 0 4 14 9 4 0 0 0 0 (128) ASN132 0 0 0 0 0 0 8 11 1 0 0 (233) ASP246 0 0 0 0 4 0 0 0 0 0 0 (235) ALA248 0 4 2 0 0 0 0 0 0 0 0 (239) GLU252 0 0 1 3 6 0 0 0 0 0 0 (240) HIS253 0 0 0 0 11 17 0 0 0 0 0 chainB ( 78) LYS81 0 0 11 9 0 0 0 0 0 0 0 (128) ARG131 0 0 0 4 8 10 4 0 0 0 0 (129) ASN132 0 1 11 8 0 0 0 0 0 0 0 (234) ASP246 0 0 0 0 0 4 0 0 0 0 0 (236) ALA248 0 0 0 0 0 0 0 2 4 0 0 (240) GLU252 0 0 0 0 0 6 4 1 0 0 0 (241) HIS253 0 0 0 0 21 11 0 0 0 0 0 prot.sequence kpfenhlksvddlkttyeeyragfiafaleknkrstpyieraralkvaasvaktpkdllylediqdallyasgisdKakkflteddkkesinnlienflepageefidelifryllfqgdslggtmRNiagalaqqkltraiisaldianipykwldsrdkkytnwmdkpeddyeletfakgiswtingkhrtlmynitvslvkknvdiclfncepqqpekylllgelkggiDpAgadEHwktantaltrirnkfsekglspktifigaaiehsmaeeiwdqlqsgsltnsanltkteqvgslcrwiini/qkpfenhlksvddlkttyeeyragfiafaleknkrstpyieraralkvaasvaktpkdllylediqdallyasgisdKakkflteddkkesinnlienflepageefidelifryllfqgdslggtmRNiagalaqqkltraiisaldianipykwldsrdkkytnwmdkpeddyeletfakgiswtingkhrtlmynitvslvkknvdiclfncepqqpekylllgelkggiDpAgadEHwktantaltrirnkfsekglspktifigaaiehsmaeeiwdqlqsgsltnsanltkteqvgslcrwiini >1ddn_ABCD: title=DIPHTHERIA TOX REPRESSOR (C102D MUTANT)/TOX DNA OPERATOR COMPLEX organism=Corynebacterium diphtheriae DNA sequence DT(F402):DA(E333) DA(F403):DT(E332) DA(F404):DT(E331) DA(F405):DT(E330) DA(F406):DT(E329) DT(F407):DA(E328) DA(F408):DT(E327) DA(F409):DT(E326) DT(F410):DA(E325) DT(F411):DA(E324) DA(F412):DT(E323) DG(F413):DC(E322) DG(F414):DC(E321) DT(F415):DA(E320) DA(F416):DT(E319) DA(F417):DT(E318) DA(F418):DT(E317) DG(F419):DC(E316) DC(F420):DG(E315) DT(F421):DA(E314) DA(F422):DT(E313) DT(F423):DA(E312) DC(F424):DG(E311) DC(F425):DG(E310) DT(F426):DA(E309) DA(F427):DT(E308) DA(F428):DT(E307) DT(F429):DA(E306) DT(F430):DA(E305) DA(F431):DT(E304) DT(F432):DA(E303) DA(F433):DT(E302) chainA ( 35) SER37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 ( 37) PRO39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 4 0 0 0 0 0 0 0 0 0 0 0 ( 38) THR40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 41) GLN43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 11 5 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 45) ARG47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 58) ARG60 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 chainB ( 35) SER37 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 37) PRO39 0 0 0 0 0 0 0 0 3 4 8 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 38) THR40 0 0 0 0 0 0 0 0 0 0 0 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 40) SER42 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 41) GLN43 0 0 0 0 0 0 0 0 0 0 0 0 8 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 45) ARG47 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainC ( 35) SER37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 37) PRO39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 38) THR40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 41) GLN43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 7 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 45) ARG47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 chainD ( 35) SER37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 ( 37) PRO39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 3 2 0 0 0 0 0 ( 38) THR40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 2 0 0 0 0 0 0 0 0 ( 40) SER42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 41) GLN43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 7 0 0 0 0 0 0 0 0 0 ( 45) ARG47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 prot.sequence dlvdttemylrtiyeleeegvtplrariaerleqSgPTvsQtvaRmerdglvvvasdRslqmtptgrtlatavmrkhrlaerlltdiigldinkvhdeadrwehvmsdeverrlvkvl/dlvdttemylrtiyeleeegvtplrariaerleqSgPTvSQtvaRmerdglvvvasdrslqmtptgrtlatavmrkhrlaerlltdiigldinkvhdeadrwehvmsdeverrlvkvl/dlvdttemylrtiyeleeegvtplrariaerleqSgPTvsQtvaRmerdglvvvasdrslqmtptgrtlatavmrkhrlaerlltdiigldinkvhdeadrwehvmsdeverrlvkvl/dlvdttemylrtiyeleeegvtplrariaerleqSgPTvSQtvaRmerdglvvvasdrslqmtptgrtlatavmrkhrlaerlltdiigldinkvhdeadrwehvmsdeverrlvkvl >1de8_B:DNase_I-like; title=HUMAN APURINIC/APYRIMIDINIC ENDONUCLEASE-1 (APE1) BOUND TO ABASIC DNA organism=Homo sapiens DNA sequence DG(X1):DC(Y22) DC(X2):DG(Y21) DT(X3):DA(Y20) DA(X4):DT(Y19) DC(X5):DG(Y18) 3DR(X6):DG(Y17) DG(X7):DC(Y16) DA(X8):DT(Y15) DT(X9):DA(Y14) DC(X10):DG(Y13) DG(X11):DC(Y12) chainB (135) ARG177 0 0 0 0 2 0 26 0 0 0 0 (187) ASN229 0 0 0 0 0 0 2 0 0 0 0 (227) TYR269 0 0 0 0 6 0 0 0 0 0 0 (228) MET270 0 0 0 0 26 0 3 0 0 0 0 (229) MET271 0 0 0 0 0 0 2 1 0 0 0 (266) ASP308 0 0 0 0 2 0 0 0 0 0 0 prot.sequence alyedppdhktspsgkpatlkicswnvDglrawikkkgldwvkeeapdilclqetkcsenklpaelqelpglshqywsapsdkegysgvgllsrqcplkvsygigdeehdqegrvivaefdsfvlvtayvpnagRglvrleyrqrwdeafrkflkglasrkplvlcgdlnvaheeidlrnpkgnkkNagftpqerqgfgellqavpladsfrhlypntpyaytfwtYMMnarsknvgwrldyfllshsllpalcdskirskalgsDhcpitlylal >1dew_B:DNase_I-like; title=CRYSTAL STRUCTURE OF HUMAN APE1 BOUND TO ABASIC DNA organism=Homo sapiens DNA sequence DG(X1):DC(Y30) DC(X2):DG(Y29) DG(X3):DC(Y28) DT(X4):DA(Y27) DC(X5):DG(Y26) DC(X6):DG(Y25) 3DR(X7):DG(Y24) DC(X8):DG(Y23) DG(X9):DC(Y22) DA(X10):DT(Y21) DC(X11):DG(Y20) DG(X12):DC(Y19) DA(X13):DT(Y18) DC(X14):DG(Y17) chainB ( 59) LYS98 0 0 0 1 0 0 0 0 0 0 0 0 0 0 (138) ARG177 0 0 0 0 0 8 2 7 0 0 0 0 0 0 (190) ASN229 0 0 0 0 0 0 0 1 0 0 0 0 0 0 (230) TYR269 0 0 0 0 0 12 0 0 0 0 0 0 0 0 (231) MET270 0 0 0 0 0 12 1 4 0 0 0 0 0 0 (232) MET271 0 0 0 0 0 0 0 4 4 0 0 0 0 0 prot.sequence egpalyedppdhktspsgkpatlkicswnvDglrawikkkgldwvkeeapdilclqetKcsenklpaelqelpglshqywsapsdkegysgvgllsrqcplkvsygigdeehdqegrvivaefdsfvlvtayvpnagRglvrleyrqrwdeafrkflkglasrkplvlcgdlnvaheeidlrnpkgnkkNagftpqerqgfgellqavpladsfrhlypntpyaytfwtYMMnarsknvgwrldyfllshsllpalcdskirskalgsdhcpitlylal >1dfm_AB: title=CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASE BGLII COMPLEXED WITH DNA 16-MER organism=Bacillus subtilis DNA sequence DT(C3):DA(D32) DT(C4):DA(D31) DA(C5):DT(D30) DT(C6):DA(D29) DA(C7):DT(D28) DG(C8):DC(D27) DA(C9):DT(D26) DT(C10):DA(D25) DC(C11):DG(D24) DT(C12):DA(D23) DA(C13):DT(D22) DT(C14):DA(D21) DA(C15):DT(D20) DA(C16):DT(D19) chainA ( 39) GLN39 0 0 0 0 0 0 0 0 0 4 0 0 0 0 ( 97) SER97 0 0 0 0 0 4 7 1 0 0 0 0 0 0 ( 98) ASN98 0 0 0 0 0 0 2 8 0 0 0 0 0 0 ( 99) TYR99 0 0 0 0 0 0 0 0 0 6 0 0 0 0 (101) PHE101 0 0 0 0 0 4 0 0 0 0 0 0 0 0 (139) SER139 0 0 0 0 0 0 0 4 0 0 0 0 0 0 (140) ASN140 0 0 0 0 0 0 0 0 3 9 8 0 0 0 (141) SER141 0 0 0 0 0 0 0 0 4 7 7 0 0 0 (142) SER142 0 0 0 0 0 0 0 1 0 0 0 0 0 0 (190) TYR190 0 0 0 0 0 8 3 0 0 0 0 0 0 0 chainB ( 39) GLN39 0 0 0 0 3 0 0 0 0 0 0 0 0 0 ( 97) SER97 0 0 0 0 0 0 1 7 4 0 0 0 0 0 ( 98) ASN98 0 0 0 0 0 0 8 2 0 0 0 0 0 0 ( 99) TYR99 0 0 0 0 6 0 0 0 0 0 0 0 0 0 (101) PHE101 0 0 0 0 0 0 0 0 4 0 0 0 0 0 (139) SER139 0 0 0 0 0 0 4 0 0 0 0 0 0 0 (140) ASN140 0 0 0 8 9 3 0 0 0 0 0 0 0 0 (141) SER141 0 0 0 5 7 3 0 0 0 0 0 0 0 0 (142) SER142 0 0 0 0 0 0 1 0 0 0 0 0 0 0 (190) TYR190 0 0 0 0 0 0 0 3 9 0 0 0 0 0 prot.sequence mkiditdynhadeilnpqlwkeieetllkmplhvkasdQaskvgslifdpvgtnqyikdelvpkhwknnipipkrfdflgtdidfgkrdtlvevqfSNYpFllnntvrselfhksnmdideegmkvaiiitkghmfpaSNSSlyyeqaqnqlnslaeynvfdvpirlvgliedfetdidivsttyadkrYsrtitkrdtvkgkvidtntpntrrrkrgtivty/mkiditdynhadeilnpqlwkeieetllkmplhvkasdQaskvgslifdpvgtnqyikdelvpkhwknnipipkrfdflgTdidfgkrdtlvevqfSNYpFllnntvrselfhksnmdideegmkvaiiitkghmfpaSNSSlyyeqaqnqlnslaeynvfdvpirlvgliedfetdidivsttyadkrYsRtitkrdtvkgkvidtntrkrgtivty >1dgc_A:Leucine_zipper_domain; title=THE X-RAY STRUCTURE OF THE GCN4-BZIP BOUND TO ATF/CREB SITE DNA SHOWS THE COMPLEX DEPENDS ON DNA FLEXIBILITY organism=SACCHAROMYCES CEREVISIAE DNA sequence DT(B-10) DG(B-9) DG(B-8) DA(B-7) DG(B-6) DA(B-5) DT(B-4) DG(B-3) DA(B-2) DC(B-1) DG(B1) DT(B2) DC(B3) DA(B4) DT(B5) DC(B6) DT(B7) DC(B8) DC(B9) chainA ( 9) ASN235 0 0 0 0 0 0 0 0 0 0 0 3 5 2 0 0 0 0 0 ( 10) THR236 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 ( 13) ALA239 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 ( 17) ARG243 0 0 0 0 0 0 0 0 0 7 6 0 0 0 0 0 0 0 0 prot.sequence paalkrarNTeaArrsRarklqrmkqledkveellsknyhlenevarlkklvger >1dh3_AC: title=CRYSTAL STRUCTURE OF A CREB BZIP-CRE COMPLEX REVEALS THE BASIS FOR CREB FAIMLY SELECTIVE DIMERIZATION AND DNA BINDING organism=Mus musculus DNA sequence DC(B-10):DG(D10) DT(B-9):DA(D9) DT(B-8):DA(D8) DG(B-7):DC(D7) DG(B-6):DC(D6) DC(B-5):DG(D5) DT(B-4):DA(D4) DG(B-3):DC(D3) DA(B-2):DT(D2) DC(B-1):DG(D1) DG(B1):DC(D-1) DT(B2):DA(D-2) DC(B3):DG(D-3) DA(B4):DT(D-4) DG(B5):DC(D-5) DC(B6):DG(D-6) DC(B7):DG(D-7) DA(B8):DT(D-8) DA(B9):DT(D-9) DG(B10):DC(D-10) chainA ( 9) ASN293 0 0 0 0 0 0 0 0 0 0 0 3 9 2 0 0 0 0 0 0 ( 10) ARG294 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 12) ALA296 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 ( 13) ALA297 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 ( 16) SER300 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 ( 17) ARG301 0 0 0 0 0 0 0 0 0 9 5 0 0 0 0 0 0 0 0 0 chainC ( 9) ASN293 0 0 0 0 0 0 8 7 0 0 0 0 0 0 0 0 0 0 0 0 ( 12) ALA296 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 13) ALA297 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 ( 16) SER300 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 17) ARG301 0 0 0 0 0 0 0 0 0 7 8 0 0 0 0 0 0 0 0 0 prot.sequence krevrlmkNReAAreSRrkkkeyvkslenrvavlenqnktlieelkalkdlyshk/krevrlmkNreAAreSRrkkkeyvkslenrvavlenqnktlieelkalkdlyshk >1diz_B:DNA-glycosylase;TATA-box_binding_protein-like; title=CRYSTAL STRUCTURE OF E. COLI 3-METHYLADENINE DNA GLYCOSYLASE (ALKA) COMPLEXED WITH DNA organism=Escherichia coli DNA sequence DG(C1):DC(D25) DA(C2):DT(D24) DC(C3):DG(D23) DA(C4):DT(D22) DT(C5):DA(D21) DG(C6):DC(D20) DA(C7):DT(D19) NRI(C8):DA(D18) DT(C9):DA(D17) DG(C10):DC(D16) DC(C11):DG(D15) DC(C12):DG(D14) chainB (125) LEU125 0 0 0 0 0 0 48 6 6 0 0 0 (126) VAL126 0 0 0 0 0 0 4 0 0 0 0 0 (178) ARG178 0 0 0 0 0 0 0 0 1 0 0 0 (239) TYR239 0 0 0 0 0 0 2 0 0 0 0 0 prot.sequence mytlnwqppydwswmlgflaaravssvetvadsyyarslavgeyrgvvtaipdiarhtlhinlsaglepvaaeclakmsrlfdlqcnpqivngalgrlgaarpglrlpgcvdafeqgvrailgqLVsvamaakltarvaqlygerlddfpeyicfptpqrlaaadpqalkalgmplkRaealihlanaalegtlpmtipgdveqamktlqtfpgigrwtanyfalrgwqakdvflpddYlikqrfpgmtpaqirryaerwkpwrsyallhiwytegwqpdea >1dnk_A:DNase_I-like; title=THE X-RAY STRUCTURE OF THE DNASE I-D(GGTATACC)2 COMPLEX AT 2.3 ANGSTROMS RESOLUTION organism=BOS TAURUS DNA sequence DG(B301):DC(C316) DG(B302):DC(C315) DT(B303):DA(C314) DA(B304):DT(C313) DT(B305):DA(C312) DA(B306):DT(C311) DC(B307):DG(C310) chainA ( 41) ARG41 0 0 0 0 8 3 0 ( 75) SER75 0 0 0 0 0 1 0 ( 76) TYR76 0 0 0 2 1 0 0 (165) TYR175 1 1 0 0 0 0 0 prot.sequence lkiaafnirtfgetkmsnatlasyivrivrrydivliqevRdshlvavgklldylnqddpntyhyvvseplgrnSYkerylflfrpnkvsvldtyqysfsrepavvkfsshstkvkefaivalhsapsdavaeinslydvyldvqqkwhlndvmlmgdfnadcsYvtssqwssirlrtsstfqwlipdsadttatstncaydrivvagsllqssvvpgsaapfdfqaayglsnemalaisdhypvevtlt >1drg_A:DNA_breaking-rejoining_enzymes;lambda_integrase-like,_N-terminal_domain; title=CRYSTAL STRUCTURE OF TRIMERIC CRE RECOMBINASE-LOX COMPLEX organism=Enterobacteria phage P1 DNA sequence DA(B2):DT(C19) DT(B3):DA(C18) DA(B4):DT(C17) DA(B5):DT(C16) DC(B6):DG(C15) DT(B7):DA(C14) DT(B8):DA(C13) DC(B9):DG(C12) DG(B10):DC(C11) DT(B11):DA(C10) DA(B12):DT(C9) DT(B13):DA(C8) DA(B14):DT(C7) DG(B15):DC(C6) DC(B16):DG(C5) chainA ( 20) HIS40 0 0 0 0 0 0 0 0 0 0 5 5 0 0 0 ( 21) THR41 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 ( 23) LYS43 0 0 0 0 0 0 0 0 0 4 6 0 0 0 0 ( 24) MET44 0 0 0 0 0 0 0 0 0 2 4 7 0 0 0 ( 27) SER47 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 ( 66) LYS86 0 0 0 0 0 0 0 0 0 0 0 0 11 10 1 ( 67) THR87 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 ( 70) GLN90 0 0 0 0 0 0 0 0 0 0 0 10 9 0 0 ( 74) GLN94 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 (211) ARG241 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 (213) ARG243 0 2 7 0 0 0 0 0 0 0 0 0 0 0 0 (214) LYS244 8 14 2 0 0 0 0 0 0 0 0 0 0 0 0 (227) SER257 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 (229) ARG259 0 0 0 0 0 0 12 19 14 0 0 0 0 0 0 (232) GLU262 0 0 0 0 0 0 0 0 4 4 0 0 0 0 0 (252) ARG282 0 0 0 0 0 0 0 0 0 6 8 0 0 0 0 (290) ILE320 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 prot.sequence devrknlmdmfrdrqafseHTwKMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmlihigvekalslgvtklverwisvsgvaddpnnylfcRvRKngvaapsatsqlStRalEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtnvnIvmnfirnldsetgamvrlledgd >1dsz_AB: title=STRUCTURE OF THE RXR/RAR DNA-BINDING DOMAIN HETERODIMER IN COMPLEX WITH THE RETINOIC ACID RESPONSE ELEMENT DR1 organism=HOMO SAPIENS DNA sequence DC(D1531):DG(C1509) DT(D1532):DA(C1508) DG(D1533):DC(C1507) DA(D1534):DT(C1506) DC(D1535):DG(C1505) DC(D1536):DG(C1504) DT(D1537):DA(C1503) DT(D1538):DA(C1502) DT(D1539):DA(C1501) DG(D1540):DC(C1500) DA(D1541):DT(C1499) DC(D1542):DG(C1498) DC(D1543):DG(C1497) DT(D1544):DA(C1496) DG(D1545):DC(C1495) chainA ( 20) GLU1153 0 0 0 0 0 0 0 0 0 0 5 5 0 0 0 ( 23) LYS1156 0 0 0 0 0 0 0 0 0 0 0 2 9 2 0 ( 27) ARG1160 0 0 0 0 0 0 0 0 0 0 2 3 3 0 0 ( 28) ARG1161 0 0 0 0 0 0 0 0 13 7 0 0 0 0 0 chainB ( 26) GLU1253 0 0 0 7 10 0 0 0 0 0 0 0 0 0 0 ( 29) LYS1256 0 0 0 0 1 5 0 0 0 0 0 0 0 0 0 ( 33) LYS1260 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 ( 34) ARG1261 0 10 7 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence pcfvcqdkssgyhygvsacEgcKgffRRsiqknmvytchrdknciinkvtrnrcqycrlqkcfevgmskesvrnd/gsftkhicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqeeRqr >1du0_AB: title=ENGRAILED HOMEODOMAIN Q50A VARIANT DNA COMPLEX organism=Drosophila melanogaster DNA sequence DT(D302):DA(C221) DT(D303):DA(C220) DA(D304):DT(C219) DG(D305):DC(C218) DG(D306):DC(C217) DT(D307):DA(C216) DA(D308):DT(C215) DA(D309):DT(C214) DT(D310):DA(C213) DT(D311):DA(C212) DA(D312):DT(C211) DC(D313):DG(C210) DA(D314):DT(C209) DT(D315):DA(C208) DG(D316):DC(C207) DG(D317):DC(C206) DC(D318):DG(C205) DA(D319):DT(C204) DA(D320):DT(C203) DA(D321):DT(C202) chainA ( 41) ILE47 0 0 0 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 0 ( 44) ALA50 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 45) ASN51 0 0 0 0 0 0 0 0 10 7 0 0 0 0 0 0 0 0 0 0 ( 49) LYS55 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 chainB ( 45) ILE147 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 48) ALA150 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 51) ARG153 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence afsseqlarlkrefnenrylterrrqqlsselglneaqikIwfANkraKikks/rprtafsseqlarlkrefnenrylterrrqqlsselglneaqikIwfANkRakikk >1e3m_AB:DNA_repair_protein_MutS,_domain_III;P-loop_containing_nucleoside_triphosphate_hydrolases; title=THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH A G:T MISMATCH organism=ESCHERICHIA COLI DNA sequence DA(F14):DT(E17) DC(F15):DG(E16) DT(F16):DA(E15) DG(F17):DC(E14) DG(F18):DC(E13) DT(F19):DA(E12) DG(F20):DC(E11) DC(F21):DG(E10) DT(F22):DG(E9) DT(F23):DA(E8) DG(F24):DC(E7) DG(F25):DC(E6) DC(F26):DG(E5) DA(F27):DT(E4) DG(F28):DC(E3) DC(F29):DG(E2) DT(F30):DA(E1) chainA ( 32) MET33 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 ( 34) ASP35 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 ( 35) PHE36 0 0 0 0 0 0 0 0 49 17 0 0 0 0 0 0 0 ( 37) GLU38 0 0 0 0 0 0 0 5 13 0 0 0 0 0 0 0 0 ( 57) ARG58 0 0 0 0 0 1 8 3 0 0 0 0 0 0 0 0 0 ( 67) MET68 0 0 0 0 0 0 0 3 7 0 0 0 0 0 0 0 0 ( 71) PRO72 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 chainB prot.sequence saienfdahtpmmqqylrlkaqhpeillfyrMgDFyElfyddakrasqlldisltkRgasagepipMagiPyhavenylaklvnqgesvaiceqigdpatskgpverkvvrivtpgtisdeallqerqdnllaaiwqdskgfgyatldissgrfrlsepadretmaaelqrtnpaellyaedfaemsliegrrglrrrplwefeidtarqqlnlqfgtrdlvgfgvenaprglcaagcllqyakdtqrttlphirsitmereqdsiimdaatrrnleitqnlaggaentlasvldctvtpmgsrmlkrwlhmpvrdtrvllerqqtigalqdftaglqpvlrqvgdlerilarlalrtarprdlarmrhafqqlpelraqletvdsapvqalrekmgefaelrdlleraiidtppvlvrdggviasgyneeldewraladgatdylerlevrerertgldtlkvgfnavhgyyiqisrgqshlapinymrrqtlknaeryiipelkeyedkvltskgkalalekqlyeelfdlllphlealqqsasalaeldvlvnlaeraytlnytcptfidkpgiritegrhpvveqvlnepfianplnlspqrrmliitgpnmggkstymrqtalialmayigsyvpaqkveigpidriftrvgfmvemtetanilhnateyslvlmdeigrgtstydglslawacaenlankikaltlfathyfeltqlpekmegvanvhldalehgdtiafmhsvqdgaasksyglavaalagvpkevikrarqklrelesis/mqqylrlkaqhpeillfyrmgdfyelfyddaKrASqLldisltpmagipyhavenyLaklvnqgesVaicErkvvrivtpgtisdeallqerqdnllaaiwqdskgfgyatldissgrfrlsepadretmaaelqrtnpaellyaedfaemsliegrrglrrrplwefeidtarqqlnlqfgtrdlvgfgvenaprglcaagcllqyakdtqrttlphirsitmereqdsiimdaatrrnleitqnlaggaentlasvldctvtpmgsrmlkrwlhmpvrdtrvllerqqtigalqdftaglqpvlrqvgdlerilarlalrtarprdlarmrhafqqlpelraqletvdsapvqalrekmgefaelrdlleraiidtppvlvrdggviasgyneeldewraladgatdylerlevrerertgldtlkvgfnavhgyyiqisrgqshlapinymrrqtlknaeryiipelkeyedkvltskgkalalekqlyeelfdlllphlealqqsasalaeldvlvnlaeraytlnytcptfidkpgiritegrhpvveqvlnepfianplnlspqrrmliitgpnmggkstymrqtalialmayigsyvpaqkveigpidriftrvgtfmvemtetanilhnateyslvlmdeigrgtstydglslawacaenlankikaltlfathyfeltqlpekmegvanvhldalehgdtiafmhsvqdgaasksyglavaalagvpkevikrarqklrelesis >1e7j_A:HMG-box; title=HMG-D COMPLEXED TO A BULGE DNA organism=DROSOPHILA MELANOGASTER DNA sequence DG(C15):DG(B12) DG(C16):DA(B11) DC(C17):DG(B10) DT(C18):DA(B9) DC(C19):DA(B8) DA(C20):DT(B7) DA(C21):DT(B6) DT(C22):DA(B5) DA(C23):DT(B4) DT(C24):DA(B3) DC(C25):DG(B2) DG(C26):DC(B1) chainA ( 10) SER10 0 0 0 0 0 0 0 0 1 1 0 0 ( 12) TYR12 0 0 0 0 0 0 0 0 1 0 0 0 ( 13) MET13 0 0 0 0 0 0 0 11 2 0 0 0 ( 32) VAL32 0 0 0 0 0 0 1 0 0 0 0 0 ( 33) THR33 0 0 0 0 0 0 2 0 0 0 0 0 ( 36) ALA36 0 0 0 0 0 0 0 1 0 0 0 0 prot.sequence msdkpkrplSaYMlwlnsaresikrenpgikVTevAkrggelwramkdkseweakaakakddydravkefeang >1ea4_DEFG: title=TRANSCRIPTIONAL REPRESSOR COPG/22BP DSDNA COMPLEX organism=STREPTOCOCCUS AGALACTIAE DNA sequence DA(W203):DT(X221) DC(W204):DG(X220) DC(W205):DG(X219) DG(W206):DC(X218) DT(W207):DA(X217) DG(W208):DC(X216) DC(W209):DG(X215) DA(W210):DT(X214) DC(W211):DG(X213) DT(W212):DA(X212) DC(W213):DG(X211) DA(W214):DT(X210) DA(W215):DT(X209) DT(W216):DA(X208) DG(W217):DC(X207) DC(W218):DG(X206) DA(W219):DT(X205) DA(W220):DT(X204) DT(W221):DA(X203) DC(W222):DG(X202) chainD ( 4) ARG4 0 0 0 0 0 0 0 0 0 0 0 0 0 16 5 5 1 0 0 0 ( 6) THR6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 9 2 0 0 chainE ( 4) ARG4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 5 6 1 ( 6) THR6 0 0 0 0 0 0 0 0 0 0 0 0 0 7 6 3 0 0 0 0 ( 8) THR8 0 0 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 0 0 0 chainF ( 4) ARG4 0 0 0 0 0 10 6 14 0 0 0 0 0 0 0 0 0 0 0 0 ( 6) THR6 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainG ( 4) ARG4 0 0 13 8 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 6) THR6 0 0 0 0 0 5 5 6 0 0 0 0 0 0 0 0 0 0 0 0 ( 8) THR8 0 0 0 0 0 0 0 1 5 0 0 0 0 0 0 0 0 0 0 0 prot.sequence mkkRlTitlsesvlenlekmaremglsksamisvalenykkgq/mkkRlTiTlsesvlenlekmaremglsksamisvalenykkgqe/mkkRlTitlsesvlenlekmaremglsksamisvalenykkgqek/mkkRlTiTlsesvlenlekmaremglsksamisvalenykkg >1ea4_H:Ribbon-helix-helix; title=TRANSCRIPTIONAL REPRESSOR COPG/22BP DSDNA COMPLEX organism=STREPTOCOCCUS AGALACTIAE DNA sequence DC(U204):DG(V220) DC(U205):DG(V219) DG(U206):DC(V218) DT(U207):DA(V217) DG(U208):DC(V216) DC(U209):DG(V215) DA(U210):DT(V214) DC(U211):DG(V213) DT(U212):DA(V212) DC(U213):DG(V211) DA(U214):DT(V210) DA(U215):DT(V209) DT(U216):DA(V208) DG(U217):DC(V207) DC(U218):DG(V206) DA(U219):DT(V205) DA(U220):DT(V204) chainH ( 3) ARG4 0 0 0 0 12 6 16 0 0 0 0 0 0 0 0 0 0 ( 5) THR6 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence kkRlTitlsesvlenlekmaremglsksamisvalenykkgqek >1ea4_HKL: title=TRANSCRIPTIONAL REPRESSOR COPG/22BP DSDNA COMPLEX organism=STREPTOCOCCUS AGALACTIAE DNA sequence DC(U204):DG(V220) DC(U205):DG(V219) DG(U206):DC(V218) DT(U207):DA(V217) DG(U208):DC(V216) DC(U209):DG(V215) DA(U210):DT(V214) DC(U211):DG(V213) DT(U212):DA(V212) DC(U213):DG(V211) DA(U214):DT(V210) DA(U215):DT(V209) DT(U216):DA(V208) DG(U217):DC(V207) DC(U218):DG(V206) DA(U219):DT(V205) DA(U220):DT(V204) chainH ( 3) ARG4 0 0 0 0 12 6 16 0 0 0 0 0 0 0 0 0 0 ( 5) THR6 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 chainK ( 4) ARG4 0 0 0 0 0 0 0 0 0 0 0 0 13 6 6 0 0 ( 6) THR6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 1 chainL ( 4) ARG4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 ( 6) THR6 0 0 0 0 0 0 0 0 0 0 0 0 2 3 2 0 0 ( 8) THR8 0 0 0 0 0 0 0 0 0 0 0 5 3 0 0 0 0 prot.sequence kkRlTitlsesvlenlekmaremglsksamisvalenykkgqek/mkkRlTitlsesvlenlekmaremglsksamisvalenykkgq/mkkRlTiTlsesvlenlekmaremglsksamisvalenykkgqe >1ebm_A:DNA-glycosylase;TATA-box_binding_protein-like; title=CRYSTAL STRUCTURE OF THE HUMAN 8-OXOGUANINE GLYCOSYLASE (HOGG1) BOUND TO A SUBSTRATE OLIGONUCLEOTIDE organism=Homo sapiens DNA sequence DG(C18):DC(D16) DC(C19):DG(D15) DG(C20):DC(D14) DT(C21):DA(D13) DC(C22):DG(D12) DC(C23):DG(D11) DA(C24):DT(D10) 8OG(C25):DC(D9) DG(C26):DC(D8) DT(C27):DA(D7) DC(C28):DG(D6) DT(C29):DA(D5) DA(C30):DT(D4) DC(C31):DG(D3) DC(C32):DG(D2) chainA ( 37) PHE45 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 (133) PHE144 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 (136) SER147 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 (138) ASN149 0 0 0 0 0 0 10 5 31 0 0 0 0 0 0 (140) ASN151 0 0 0 0 0 1 8 0 0 0 0 0 0 0 0 (141) ILE152 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 (143) ARG154 0 0 0 0 0 0 20 10 0 0 0 0 0 0 0 (144) ILE155 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 (192) TYR203 0 0 0 0 0 0 0 16 7 0 0 0 0 0 0 (193) ARG204 0 0 0 0 0 0 0 11 0 0 0 0 0 0 0 (196) TYR207 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 (238) GLN249 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 (246) MET257 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 (255) PRO266 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 (257) ASP268 0 0 0 0 0 0 0 13 0 0 0 0 0 0 0 (260) MET271 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 (304) GLN315 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 (308) PHE319 0 0 0 0 0 0 0 40 0 0 0 0 0 0 0 prot.sequence gseghrtlastpalwasipcprselrldlvlpsgqsfrwreqspahwsgvladqvwtltqteeqlhctvyrsqasrptpdeleavrkyfqldvtlaqlyhhwgsvdshfqevaqkfqgvrllrqdpieclfsficsSNnNiaRitgmverlcqafgprliqlddvtyhgfpslqalagpeveahlrklglgYRarYvsasaraileeqgglawlqqlressyeeahkalcilpgvgtqvadciclmaldkpqavpvdvhmwhiaqrdyswhpttsqakgpspqtnkelgnffrslwgpyagwaqavlfsadlrq >1ecr_A:Replication_terminator_protein_Tus; title=ESCHERICHIA COLI REPLICATION TERMINATOR PROTEIN (TUS) COMPLEXED WITH DNA organism=Escherichia coli DNA sequence DA(B312):DT(C341) DG(B313):DC(C340) DT(B314):DA(C339) DT(B315):DA(C338) DA(B316):DT(C337) DC(B317):DG(C336) DA(B318):DT(C335) DA(B319):DT(C334) DC(B320):DG(C333) DA(B321):DT(C332) DT(B322):DA(C331) DA(B323):DT(C330) DC(B324):DG(C329) DT(B325):DA(C328) chainA ( 85) LYS89 0 0 0 0 0 0 0 0 1 4 9 0 0 0 ( 89) ARG93 0 0 0 0 0 0 1 0 0 0 0 0 0 0 (132) THR136 0 0 0 0 0 0 0 0 0 0 2 0 0 0 (149) LEU153 0 0 0 0 0 0 0 0 1 0 0 0 0 0 (169) ALA173 0 0 1 0 0 0 0 0 0 0 0 0 0 0 (171) LYS175 0 0 1 9 9 3 0 0 0 0 0 0 0 0 (173) ILE177 0 0 0 0 0 0 3 7 1 0 0 0 0 0 (174) ILE178 0 0 0 0 1 7 0 0 0 0 0 0 0 0 (194) ARG198 0 0 0 0 0 0 0 0 0 0 0 0 7 10 (228) ARG232 0 0 0 0 0 0 0 0 8 25 0 0 0 0 (230) VAL234 0 0 0 0 0 0 4 7 0 0 0 0 0 0 (233) GLN237 0 0 0 0 0 0 5 0 0 0 0 0 0 0 (235) ILE239 0 1 0 0 0 0 0 0 0 0 0 0 0 0 (237) ARG241 5 4 0 0 0 0 0 0 0 0 0 0 0 0 (246) GLN250 9 5 0 0 0 0 0 0 0 0 0 0 0 0 (248) GLN252 0 2 3 5 1 0 0 0 0 0 0 0 0 0 (250) ALA254 0 0 0 0 0 1 0 0 0 0 0 0 0 0 (284) ARG288 5 2 0 0 0 0 0 0 0 0 0 0 0 0 (286) LYS290 3 6 6 0 0 0 0 0 0 0 0 0 0 0 prot.sequence dlvdrlnttfrqmeqelaifaahleqhkllvarvfslpevkkedehnplnrievkqhlgndaqslalrhfrhlfiqqqsenrssKaavRlpgvlcyqvdnlsqaalvshiqhinklkttfehivtveselpTaarfewvhrhlpglitLnayrtltvlhdpatlrfgwAnKhIIknlhrdevlaqlekslkspRsvapwtreewqrklereyqdiaalpqnaklkikRpVkvQpIaRvwykgdqkQvQhAcptplialinrdngagvpdvgellnydadnvqhRyKpqaqplrliiprlhlyvad >1efa_AB: title=CRYSTAL STRUCTURE OF THE LAC REPRESSOR DIMER BOUND TO OPERATOR AND THE ANTI-INDUCER ONPF organism=Escherichia coli DNA sequence DT(D5):DA(E18) DG(D6):DC(E17) DT(D7):DA(E16) DG(D8):DC(E15) DA(D9):DT(E14) DG(D10):DC(E13) DC(D11):DG(E12) DG(D12):DC(E11) DC(D13):DG(E10) DT(D14):DA(E9) DC(D15):DG(E8) DA(D16):DT(E7) DC(D17):DG(E6) DA(D18):DT(E5) DA(D19):DT(E4) DT(D20):DA(E3) DT(D21):DA(E2) chainA ( 5) LEU6 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 ( 6) TYR7 0 0 0 0 0 6 1 0 0 0 0 0 0 0 0 0 0 ( 15) SER16 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 16) TYR17 0 0 12 8 5 0 0 0 0 0 0 0 0 0 0 0 0 ( 17) GLN18 0 3 7 7 1 0 0 0 0 0 0 0 0 0 0 0 0 ( 20) SER21 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 ( 21) ARG22 14 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 52) ALA53 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 ( 55) LEU56 0 0 0 0 0 0 9 4 0 0 0 0 0 0 0 0 0 ( 56) ALA57 0 0 0 0 3 3 3 0 0 0 0 0 0 0 0 0 0 chainB ( 5) LEU6 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 ( 6) TYR7 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 ( 15) SER16 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 ( 16) TYR17 0 0 0 0 0 0 0 0 0 3 7 16 0 0 0 0 0 ( 17) GLN18 0 0 0 0 0 0 0 0 0 1 9 9 7 0 0 0 0 ( 20) SER21 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 ( 21) ARG22 0 0 0 0 0 0 0 0 0 0 0 0 8 21 0 0 0 ( 28) HIS29 0 0 0 0 0 0 0 0 0 0 0 0 0 1 7 0 0 ( 52) ALA53 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 ( 55) LEU56 0 0 0 0 0 0 4 7 0 0 0 0 0 0 0 0 0 ( 56) ALA57 0 0 0 0 0 0 0 3 3 1 0 0 0 0 0 0 0 prot.sequence kpvtLYdvaeyagvSYQtvSRvvnqashvsaktrekveaamaelnyipnrvAqqLAgkqslligvatsslalhapsqivaaiksradqlgasvvvsmversgveacktavhnllaqrvsgliinyplddqdaiaveaactnvpalfldvsdqtpinsiifshedgtrlgvehlvalghqqiallagplssvsarlrlagwhkyltrnqiqpiaeregdwsamsgfqqtmqmlnegivptamlvandqmalgamraitesglrvgadisvvgyddtedsscyipplttikqdfrllgqtsvdrllqlsqgqavkgnqllpvslvkrktt/kpvtLYdvaeyagvSYQtvSRvvnqasHvsaktrekveaamaelnyipnrvAqqLAgkqslligvatsslalhapsqivaaiksradqlgasvvvsmversgveacktavhnllaqrvsgliinyplddqdaiaveaactnvpalfldvsdqtpinsiifshedgtrlgvehlvalghqqiallagplssvsarlrlagwhkyltrnqiqpiaeregdwsamsgfqqtmqmlnegivptamlvandqmalgamraitesglrvgadisvvgyddtedsscyipplttikqdfrllgqtsvdrllqlsqgqavkgnqllpvslvkrkttla >1egw_AB: title=CRYSTAL STRUCTURE OF MEF2A CORE BOUND TO DNA organism=Homo sapiens DNA sequence DA(F2):DT(E17) DA(F3):DT(E16) DG(F4):DC(E15) DC(F5):DG(E14) DT(F6):DA(E13) DA(F7):DT(E12) DA(F8):DT(E11) DT(F9):DA(E10) DA(F10):DT(E9) DA(F11):DT(E8) DT(F12):DA(E7) DA(F13):DT(E6) DG(F14):DC(E5) DC(F15):DG(E4) DT(F16):DA(E3) DT(F17):DA(E2) chainA ( 2) ARG3 0 0 0 0 0 0 0 0 0 0 8 14 10 0 0 0 ( 14) ARG15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 ( 22) LYS23 0 0 0 0 0 0 0 0 0 0 0 6 3 0 0 0 chainB ( 2) ARG3 0 0 0 10 14 7 0 0 0 0 0 0 0 0 0 0 ( 22) LYS23 0 0 0 6 7 0 0 0 0 0 0 0 0 0 0 0 prot.sequence gRkkiqitrimdeRnrqvtftKrkfglmkkayelsvlcdceialiifnssnklfqyastdmdkvllkytey/gRkkiqitrimdernrqvtftKrkfglmkkayelsvlcdceialiifnssnklfqyastdmdkvllkyteyn >1ej9_A:Eukaryotic_DNA_topoisomerase_I,_N-terminal_DNA-binding_fragment;DNA_breaking-rejoining_enzymes; title=CRYSTAL STRUCTURE OF HUMAN TOPOISOMERASE I DNA COMPLEX organism=Homo sapiens DNA sequence DA(C1):DT(D122) DA(C2):DT(D121) DA(C3):DT(D120) DA(C4):DT(D119) DA(C5):DT(D118) DG(C6):DC(D117) DA(C7):DT(D116) DC(C8):DG(D115) DT(C9):DA(D114) DC(C10):DG(D113) DA(C11):DT(D112) DG(C12):DC(D111) DA(C13):DT(D110) DA(C14):DT(D109) DA(C15):DT(D108) DA(C16):DT(D107) DA(C17):DT(D106) DT(C18):DA(D105) DT(C19):DA(D104) DT(C20):DA(D103) DT(C21):DA(D102) DT(C22):DA(D101) chainA (150) ASN352 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 (162) ARG364 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 (222) ILE424 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (224) TYR426 0 0 0 0 0 0 7 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (226) MET428 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (289) ASN491 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (330) LYS532 0 0 0 0 0 0 0 0 4 6 0 0 0 0 0 0 0 0 0 0 0 0 (331) ASP533 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 prot.sequence wkwweeerypegikwkflehkgpvfappyeplpenvkfyydgkvmklspkaeevatffakmldheyttkeifrknffkdwrkemtneekniitnlskcdftqmsqyfkaqtearkqmskeeklkikeenekllkeygfcimdnhkeriaNfkieppglfrgRgnhpkmgmlkrrimpediiincskdakvpspppghkwkevrhdnkvtwlvswteniqgsIkYiMlnpssrikgekdwqkyetarrlkkcvdkirnqyredwkskemkvrqravalyfidklalragNekeegetadtvgccslrvehinlhpeldgqeyvvefdflgKDsiryynkvpvekrvfknlqlfmenkqpeddlfdrlntgilnkhlqdlmegltakvfrtynasitlqqqlkeltapdenipakilsynranravailcnhqialgtsklNfldpritvawckkwgvpiekiynktqrekfawaidmadedyef >1emj_A:Uracil-DNA_glycosylase-like; title=URACIL-DNA GLYCOSYLASE BOUND TO DNA CONTAINING A 4'-THIO- 2'DEOXYURIDINE ANALOG PRODUCT organism=Homo sapiens DNA sequence DA(C22):DT(B10) DA(C23):DT(B9) DG(C24):DC(B8) DA(C25):DT(B7) DT(C26):DA(B6) DA(C27):ASU(B5) DA(C28):DT(B4) DC(C29):DG(B3) DA(C30):DT(B2) chainA (190) PRO271 0 0 0 0 0 0 5 0 0 (191) LEU272 0 0 0 0 20 3 19 0 0 (194) TYR275 0 0 0 0 0 1 0 0 0 (195) ARG276 0 0 0 1 4 0 0 0 0 prot.sequence meffgeswkkhlsgefgkpyfiklmgfvaeerkhytvyppphqvftwtqmcdikdvkvvilgqdpyhgpnqahglcfsvqrpvppppsleniykelstdiedfvhpghgdlsgwakqgvlllnavltvrahqanshkergweqftdavvswlnqnsnglvfllwgsyaqkkgsaidrkrhhvlqtahpsPLsvYRgffgcrhfsktnellqksgkkpidwkel >1eo3_AB: title=INHIBITION OF ECORV ENDONUCLEASE BY DEOXYRIBO-3'-S- PHOSPHOROTHIOLATES: A HIGH RESOLUTION X-RAY CRYSTALLOGRAPHIC STUDY organism=Escherichia coli DNA sequence DA(C3):DT(D10) DG(C4):DC(D9) DA(C5):DT(D8) TSP(C6):DA(D7) DA(C7):TSP(D6) DT(C8):DA(D5) DC(C9):DG(D4) DT(C10):DA(D3) DT(C11):DA(D2) chainA ( 69) ASN70 0 6 7 3 0 0 0 0 0 (103) LYS104 0 0 0 0 0 0 0 1 0 (105) THR106 0 0 0 0 0 11 1 0 0 (179) SER183 0 0 0 0 0 6 3 0 0 (181) ASN185 0 0 0 0 0 11 17 0 0 (182) THR186 0 0 0 5 1 8 0 0 0 (184) ASN188 0 0 0 0 0 4 0 0 0 chainB (102) THR106 0 0 9 0 0 0 0 0 0 (174) SER183 0 4 7 0 0 0 0 0 0 (176) ASN185 0 16 10 0 0 0 0 0 0 (177) THR186 0 0 8 1 5 0 0 0 0 (179) ASN188 0 0 4 0 0 0 0 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytnkenekiKfTlggytsfirnntknivypfdqyiahwiigyvytrvatksslktynilneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk/slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqnhypdftlykpsepnkkiaidikttytnekikfTlggytsfirnntknivypfdqyiahwiigyvytrvslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk >1eo3_B:Restriction_endonuclease-like; title=INHIBITION OF ECORV ENDONUCLEASE BY DEOXYRIBO-3'-S- PHOSPHOROTHIOLATES: A HIGH RESOLUTION X-RAY CRYSTALLOGRAPHIC STUDY organism=Escherichia coli DNA sequence DA(C3):DT(D10) DG(C4):DC(D9) DA(C5):DT(D8) TSP(C6):DA(D7) DA(C7):TSP(D6) DT(C8):DA(D5) DC(C9):DG(D4) DT(C10):DA(D3) DT(C11):DA(D2) chainB (102) THR106 0 0 9 0 0 0 0 0 0 (174) SER183 0 4 7 0 0 0 0 0 0 (176) ASN185 0 16 10 0 0 0 0 0 0 (177) THR186 0 0 8 1 5 0 0 0 0 (179) ASN188 0 0 4 0 0 0 0 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqnhypdftlykpsepnkkiaidikttytnekikfTlggytsfirnntknivypfdqyiahwiigyvytrvslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk >1eo4_AB: title=ECORV BOUND TO MN2+ AND COGNATE DNA CONTAINING A 3'S SUBSTITION AT THE CLEAVAGE SITE organism=Escherichia coli DNA sequence DA(D2):DT(C11) DA(D3):DT(C10) DG(D4):DC(C9) DA(D5):DT(C8) TSP(D6):DA(C7) DA(D7):TSP(C6) DT(D8):DA(C5) DC(D9):DG(C4) DT(D10):DA(C3) chainA ( 69) ASN70 0 0 0 0 0 5 3 3 0 (105) THR106 0 0 1 10 0 0 0 0 0 (177) SER183 0 0 3 7 0 0 0 0 0 (179) ASN185 0 0 13 10 0 0 0 0 0 (180) THR186 0 0 0 9 3 5 0 0 0 (182) ASN188 0 0 0 4 0 0 0 0 0 chainB ( 69) ASN70 0 0 3 3 6 0 0 0 0 (102) THR106 0 0 0 0 0 0 7 0 0 (174) SER183 0 0 0 0 0 0 7 2 0 (176) ASN185 0 0 0 0 0 0 10 14 0 (177) THR186 0 0 0 0 5 3 8 0 0 (179) ASN188 0 0 0 0 0 0 4 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytnkenekikfTlggytsfirnntknivypfdqyiahwiigyvytrvksslktynilneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqrndkynniseyrnwiyrgrk/slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytnkkikfTlggytsfirnntknivypfdqyiahwiigyvytrvslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk >1eo4_B:Restriction_endonuclease-like; title=ECORV BOUND TO MN2+ AND COGNATE DNA CONTAINING A 3'S SUBSTITION AT THE CLEAVAGE SITE organism=Escherichia coli DNA sequence DA(C3):DT(D10) DG(C4):DC(D9) DA(C5):DT(D8) TSP(C6):DA(D7) DA(C7):TSP(D6) DT(C8):DA(D5) DC(C9):DG(D4) DT(C10):DA(D3) DT(C11):DA(D2) chainB ( 69) ASN70 0 0 0 0 6 3 3 0 0 (102) THR106 0 0 7 0 0 0 0 0 0 (174) SER183 0 2 7 0 0 0 0 0 0 (176) ASN185 0 14 10 0 0 0 0 0 0 (177) THR186 0 0 8 3 5 0 0 0 0 (179) ASN188 0 0 4 0 0 0 0 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytnkkikfTlggytsfirnntknivypfdqyiahwiigyvytrvslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk >1eon_AB: title=ECORV BOUND TO 3'-S-PHOSPHOROTHIOLATE DNA AND CA2+ organism=Escherichia coli DNA sequence DA(D2):DT(C11) DA(D3):DT(C10) DG(D4):DC(C9) DA(D5):DT(C8) TSP(D6):DA(C7) DA(D7):TSP(C6) DT(D8):DA(C5) DC(D9):DG(C4) DT(D10):DA(C3) DT(D11):DA(C2) chainA ( 69) ASN70 0 0 0 0 0 3 6 5 0 0 (105) THR106 0 0 1 10 0 0 0 0 0 0 (174) SER183 0 0 4 7 0 0 0 0 0 0 (176) ASN185 0 0 17 10 0 0 0 0 0 0 (177) THR186 0 0 0 8 3 5 0 0 0 0 (179) ASN188 0 0 0 4 0 0 0 0 0 0 chainB (101) THR106 0 0 0 0 0 0 9 1 0 0 (173) SER183 0 0 0 0 0 0 6 3 0 0 (175) ASN185 0 0 0 0 0 0 11 17 0 0 (176) THR186 0 0 0 0 5 4 9 0 0 0 (178) ASN188 0 0 0 0 0 0 4 0 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytnkenekikfTlggytsfirnntknivypfdqyiahwiigyvytrvksslktyniipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk/slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqnhypdftlykpsepnkkiaidikttytnkikfTlggytsfirnntknivypfdqyiahwiigyvytrvslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrnkynniseyrnwiyrgrk >1eoo_A:Restriction_endonuclease-like; title=ECORV BOUND TO COGNATE DNA organism=Escherichia coli DNA sequence DG(D1):DC(C12) DA(D2):DT(C11) DA(D3):DT(C10) DG(D4):DC(C9) DA(D5):DT(C8) DT(D6):DA(C7) DA(D7):DT(C6) DT(D8):DA(C5) DC(D9):DG(C4) DT(D10):DA(C3) DT(D11):DA(C2) DC(D12):DG(C1) chainA ( 69) ASN70 0 0 0 0 0 0 9 2 1 0 0 0 (105) THR106 0 0 0 1 10 0 0 0 0 0 0 0 (182) SER183 0 0 0 2 6 0 0 0 0 0 0 0 (184) ASN185 0 0 0 12 13 0 0 0 0 0 0 0 (185) THR186 0 0 0 1 9 4 5 0 0 0 0 0 (187) ASN188 0 0 0 0 4 0 0 0 0 0 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytnkenekiKfTlggytsfirnntknivypfdqyiahwiigyvytrvatrksslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk >1eoo_AB: title=ECORV BOUND TO COGNATE DNA organism=Escherichia coli DNA sequence DG(D1):DC(C12) DA(D2):DT(C11) DA(D3):DT(C10) DG(D4):DC(C9) DA(D5):DT(C8) DT(D6):DA(C7) DA(D7):DT(C6) DT(D8):DA(C5) DC(D9):DG(C4) DT(D10):DA(C3) DT(D11):DA(C2) DC(D12):DG(C1) chainA ( 69) ASN70 0 0 0 0 0 0 9 2 1 0 0 0 (105) THR106 0 0 0 1 10 0 0 0 0 0 0 0 (182) SER183 0 0 0 2 6 0 0 0 0 0 0 0 (184) ASN185 0 0 0 12 13 0 0 0 0 0 0 0 (185) THR186 0 0 0 1 9 4 5 0 0 0 0 0 (187) ASN188 0 0 0 0 4 0 0 0 0 0 0 0 chainB ( 69) ASN70 0 0 0 1 2 6 0 0 0 0 0 0 (105) THR106 0 0 0 0 0 0 0 9 1 0 0 0 (182) SER183 0 0 0 0 0 0 0 6 2 0 0 0 (184) ASN185 0 0 0 0 0 0 0 11 17 0 0 0 (185) THR186 0 0 0 0 0 5 3 8 0 0 0 0 (187) ASN188 0 0 0 0 0 0 0 4 0 0 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytnkenekiKfTlggytsfirnntknivypfdqyiahwiigyvytrvatrksslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk/slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytnkenekikfTlggytsfirnntknivypfdqyiahwiigyvytrvatrksslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk >1eop_A:Restriction_endonuclease-like; title=ECORV BOUND TO COGNATE DNA organism=Escherichia coli DNA sequence DA(D2):DT(C11) DA(D3):DT(C10) DG(D4):DC(C9) DA(D5):DT(C8) DT(D6):DA(C7) DA(D7):DT(C6) DT(D8):DA(C5) DC(D9):DG(C4) DT(D10):DA(C3) DT(D11):DA(C2) chainA ( 64) ASN70 0 0 0 0 0 2 6 6 0 0 ( 98) LYS104 0 2 0 0 0 0 0 0 0 0 (100) THR106 0 0 1 9 0 0 0 0 0 0 (177) SER183 0 0 3 7 0 0 0 0 0 0 (179) ASN185 0 0 16 12 0 0 0 0 0 0 (180) THR186 0 0 0 6 5 5 0 0 0 0 (182) ASN188 0 0 0 4 0 0 0 0 0 0 prot.sequence slrsdlinalydevcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytnkenekiKfTlggytsfirnntknivypfdqyiahwiigyvytrvatrksslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgr >1eop_AB: title=ECORV BOUND TO COGNATE DNA organism=Escherichia coli DNA sequence DA(D2):DT(C11) DA(D3):DT(C10) DG(D4):DC(C9) DA(D5):DT(C8) DT(D6):DA(C7) DA(D7):DT(C6) DT(D8):DA(C5) DC(D9):DG(C4) DT(D10):DA(C3) DT(D11):DA(C2) chainA ( 64) ASN70 0 0 0 0 0 2 6 6 0 0 ( 98) LYS104 0 2 0 0 0 0 0 0 0 0 (100) THR106 0 0 1 9 0 0 0 0 0 0 (177) SER183 0 0 3 7 0 0 0 0 0 0 (179) ASN185 0 0 16 12 0 0 0 0 0 0 (180) THR186 0 0 0 6 5 5 0 0 0 0 (182) ASN188 0 0 0 4 0 0 0 0 0 0 chainB ( 69) ASN70 0 0 1 2 6 0 0 0 0 0 (105) THR106 0 0 0 0 0 0 6 0 0 0 (179) SER183 0 0 0 0 0 0 5 4 0 0 (181) ASN185 0 0 0 0 0 0 10 19 0 0 (182) THR186 0 0 0 0 5 5 8 0 0 0 (184) ASN188 0 0 0 0 0 0 4 0 0 0 prot.sequence slrsdlinalydevcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytnkenekiKfTlggytsfirnntknivypfdqyiahwiigyvytrvatrksslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgr/slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytnkenekikfTlggytsfirnntknivypfdqyiahwiigyvytrvatslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk >1eqz_ABCDEFGH:Histone-fold;PH_domain-like;lambda_repressor-like_DNA-binding_domains;p53-like_transcription_factors;Nucleic_acid-binding_proteins;P-loop_containing_nucleoside_triphosphate_hydrolases; title=X-RAY STRUCTURE OF THE NUCLEOSOME CORE PARTICLE AT 2.5 A RESOLUTION organism=GALLUS GALLUS DNA sequence DA(J147):DT(I146) DT(J148):DA(I145) DC(J149):DG(I144) DA(J150):DT(I143) DA(J151):DT(I142) DT(J152):DA(I141) DA(J153):DT(I140) DT(J154):DA(I139) DC(J155):DG(I138) DC(J156):DG(I137) DA(J157):DT(I136) DC(J158):DG(I135) DC(J159):DG(I134) DT(J160):DA(I133) DG(J161):DC(I132) DC(J162):DG(I131) DA(J163):DT(I130) DG(J164):DC(I129) DA(J165):DT(I128) DT(J166):DA(I127) DT(J167):DA(I126) DC(J168):DG(I125) DT(J169):DA(I124) DA(J170):DT(I123) DC(J171):DG(I122) DC(J172):DG(I121) DA(J173):DT(I120) DA(J174):DT(I119) DA(J175):DT(I118) DA(J176):DT(I117) DG(J177):DC(I116) DT(J178):DA(I115) DG(J179):DC(I114) DT(J180):DA(I113) DA(J181):DT(I112) DT(J182):DA(I111) DT(J183):DA(I110) DT(J184):DA(I109) DG(J185):DC(I108) DG(J186):DC(I107) DA(J187):DT(I106) DA(J188):DT(I105) DA(J189):DT(I104) DC(J190):DG(I103) DT(J191):DA(I102) DG(J192):DC(I101) DC(J193):DG(I100) DT(J194):DA(I99) DC(J195):DG(I98) DC(J196):DG(I97) DA(J197):DT(I96) DT(J198):DA(I95) DC(J199):DG(I94) DA(J200):DT(I93) DA(J201):DT(I92) DA(J202):DT(I91) DA(J203):DT(I90) DG(J204):DC(I89) DG(J205):DC(I88) DC(J206):DG(I87) DA(J207):DT(I86) DT(J208):DA(I85) DG(J209):DC(I84) DT(J210):DA(I83) DT(J211):DA(I82) DC(J212):DG(I81) DA(J213):DT(I80) DG(J214):DC(I79) DC(J215):DG(I78) DG(J216):DC(I77) DG(J217):DC(I76) DA(J218):DT(I75) DA(J219):DT(I74) DT(J220):DA(I73) DT(J221):DA(I72) DC(J222):DG(I71) DC(J223):DG(I70) DG(J224):DC(I69) DC(J225):DG(I68) DT(J226):DA(I67) DG(J227):DC(I66) DA(J228):DT(I65) DA(J229):DT(I64) DC(J230):DG(I63) DA(J231):DT(I62) DT(J232):DA(I61) DG(J233):DC(I60) DC(J234):DG(I59) DC(J235):DG(I58) DT(J236):DA(I57) DT(J237):DA(I56) DT(J238):DA(I55) DT(J239):DA(I54) DG(J240):DC(I53) DA(J241):DT(I52) DT(J242):DA(I51) DG(J243):DC(I50) DG(J244):DC(I49) DA(J245):DT(I48) DG(J246):DC(I47) DC(J247):DG(I46) DA(J248):DT(I45) DG(J249):DC(I44) DT(J250):DA(I43) DT(J251):DA(I42) DT(J252):DA(I41) DC(J253):DG(I40) DC(J254):DG(I39) DA(J255):DT(I38) DA(J256):DT(I37) DA(J257):DT(I36) DT(J258):DA(I35) DA(J259):DT(I34) DC(J260):DG(I33) DA(J261):DT(I32) DC(J262):DG(I31) DT(J263):DA(I30) DT(J264):DA(I29) DT(J265):DA(I28) DT(J266):DA(I27) DG(J267):DC(I26) DG(J268):DC(I25) DT(J269):DA(I24) DA(J270):DT(I23) DG(J271):DC(I22) DA(J272):DT(I21) DA(J273):DT(I20) DT(J274):DA(I19) DC(J275):DG(I18) DT(J276):DA(I17) DG(J277):DC(I16) DC(J278):DG(I15) DA(J279):DT(I14) DG(J280):DC(I13) DG(J281):DC(I12) DT(J282):DA(I11) DG(J283):DC(I10) DG(J284):DC(I9) DA(J285):DT(I8) DT(J286):DA(I7) DA(J287):DT(I6) DT(J288):DA(I5) DT(J289):DA(I4) DG(J290):DC(I3) DA(J291):DT(I2) DT(J292):DA(I1) chainA chainB ( 12) ARG29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 14) LYS31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 16) ARG33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainC ( 12) ARG40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 13) TYR41 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 36) LEU65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 54) ARG83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainD ( 32) ARG45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainE (121) SER122 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainF chainG ( 25) ARG40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 49) LEU65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 66) ARG83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainH ( 25) PRO32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 38) ARG45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence sgrgkqggkarakaksrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaardnkktriiprhlqlairndeelnkllgkvtiaqggvlpniqavllpkktdshka/vtktqkkgdkkRkKsRkesysiyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytssk/apatggvkkphRYrpgtvalreiryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvglfedtnlcaihakrvtimpkdiqlarrirgera/gakrhrkvlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakktvtamdvvyalkrqgrtlygfgg/grgkqggkarakaksrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaardnkktriiprhlqlairndeelnkllgkvtiaqggvlpniqavllpkktdShkakak/tktqkkgdkkrkksrkesysiyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytssk/prkqlatkaarksapatggvkkphRyrpgtvalreirryqkstellirLpfqrlvreiaqdktdlRfqssavmalqeaseaylvglfedtnlcaihakrvtimpkdiqlarirgera/kglgkggakrhrkvlrdniqgitkPairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg >1eri_A:Restriction_endonuclease-like; title=X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE-DNA RECOGNITION COMPLEX: THE RECOGNITION NETWORK AND THE INTEGRATION OF RECOGNITION AND CLEAVAGE organism=ESCHERICHIA COLI DNA sequence DT(B1) DC(B2) DG(B3) DC(B4) DG(B5) DA(B6) DA(B7) DT(B8) DT(B9) DC(B10) DG(B11) DC(B12) DG(B13) chainA ( 73) LYS89 0 0 1 0 0 0 0 0 0 0 0 0 0 ( 99) GLN115 0 0 0 0 0 0 0 4 0 0 0 0 0 (121) MET137 0 0 0 0 0 0 0 0 2 1 0 0 0 (122) ALA138 0 0 0 0 0 0 0 0 0 3 1 0 0 (125) ASN141 0 0 0 0 0 0 0 1 0 0 0 0 0 (126) ALA142 0 0 0 0 0 0 5 5 0 0 0 0 0 (129) ARG145 0 0 0 0 0 5 11 0 0 0 0 0 0 prot.sequence sqgvigifgdyakahdlavgevsklvkkalsneypqlsfryrdsikkteinealkkidpdlggtlfvsnssiKpdggivevkddygewrvvlvaeakhQgkdiinirngllvgkrgdqdlMAagNAieRshkniseianfmlseshfpyvlflegsnfltenisitrpdgrvvnleynsgilnrldrltaanygmpinsnlcinkfvnhkdksimlqaasiytqgdgrewdskimfeimfdisttslrvlgrdlfeqltsk >1esg_AB: title=RESTRICTION ENDONUCLEASE BAMHI BOUND TO A NON-SPECIFIC DNA. organism=Bacillus amyloliquefaciens DNA sequence DT(C1):DA(D8) DG(C2):DC(D7) DG(C3):DC(D6) DA(C4):DT(D5) DT(C5):DA(D4) DT(C6):DA(D3) DC(C7):DG(D2) DA(C8):DT(D1) chainA (155) ARG155 0 0 0 0 0 0 5 17 (195) SER195 4 0 0 0 0 0 0 0 (196) ASP196 1 0 0 0 0 0 0 0 chainB (155) ARG155 0 5 3 0 0 0 0 0 prot.sequence mevekefitdeakellskdkliqqaynevktsicspiwpatsktftinntekncngvvpikelcytlledtynwyrekpldilklekkkggpidvykefienselkrvgmefetgnissahrsmnklllglkhgeidlaiilmpikqlayyltdRvtnfeelepyfeltegqpfifigfnaeaynsnvplipkgSDgmskrsikkwkdk/mevekefitdeakellskdkliqqaynevktsicspiwpatsktftinntekncngvvpikelcytlledtynwyrekpldilklekkkggpidvykefienselkrvgmefetgnissahrsmnklllglkhgeidlaiilmpikqlayyltdRvtnfeelepyfeltegqpfifigfnaeaynsnvplipkgsdgmskrsikkwkdkven >1ewn_A:FMT_C-terminal_domain-like; title=CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH 1,N6-ETHENOADENINE-DNA organism=Homo sapiens DNA sequence DG(E15):DC(D11) DC(E16):DG(D10) DA(E17):DT(D9) DA(E18):DT(D8) DT(E19):EDA(D7) DC(E20):DG(D6) DA(E21):DT(D5) DT(E22):DA(D4) DG(E23):DC(D3) DT(E24):DA(D2) DC(E25):DG(D1) chainA ( 46) TYR127 0 0 0 0 49 0 0 0 0 0 0 ( 54) ALA135 0 0 0 0 2 0 0 0 0 0 0 ( 55) HIS136 0 0 0 0 25 0 0 0 0 0 0 ( 68) MET149 0 0 0 0 3 0 0 0 0 0 0 ( 76) TYR157 0 0 0 0 3 0 0 0 0 0 0 ( 78) TYR159 0 0 0 0 15 0 0 0 0 0 0 ( 81) TYR162 0 0 0 96 1 12 0 0 0 0 0 ( 83) MET164 0 0 0 12 1 0 0 0 0 0 0 ( 84) TYR165 0 0 1 10 0 0 0 0 0 0 0 ( 88) ASN169 0 0 0 0 10 0 0 0 0 0 0 ( 97) CYS178 0 0 0 0 2 0 0 0 0 0 0 ( 99) LEU180 0 0 0 0 8 0 0 0 0 0 0 prot.sequence hltrlgleffdqpavplaraflgqvlvrrlpngtelrgrivetqaylgpedeaahsrggrqtprnrgmfmkpgtlyvyiiYgMYfcmnissqgdgacvllraleplegletmrqlrstvlkdrelcsgpsklcqalainksfdqrdlaqdeavwlergpavvaaarvgvghagewarkplrfyvrgspwvsvvdrvaeqd >1ewq_AB: title=CRYSTAL STRUCTURE TAQ MUTS COMPLEXED WITH A HETERODUPLEX DNA AT 2.2 A RESOLUTION organism=Thermus aquaticus DNA sequence DG(D1952):DC(C1923) DA(D1953):DT(C1922) DC(D1954):DG(C1921) DG(D1955):DC(C1920) DA(D1956):DT(C1919) DG(D1957):DC(C1918) DC(D1958):DG(C1917) DC(D1959):DG(C1916) DG(D1960):DC(C1915) DC(D1961):DG(C1914) DC(D1962):DG(C1912) DG(D1963):DC(C1911) DC(D1964):DG(C1910) DT(D1965):DA(C1909) DA(D1966):DT(C1908) DG(D1967):DC(C1907) DC(D1968):DG(C1906) DG(D1969):DC(C1905) DT(D1970):DA(C1904) DC(D1971):DG(C1903) DG(D1972):DC(C1902) chainA ( 39) PHE39 0 0 0 0 0 0 0 0 0 13 0 0 0 0 0 0 0 0 0 0 0 chainB prot.sequence megmlkgegpgplppllqqyvelrdqypdylllfqvgdFyecfgedaerlaralglvlthktskdfttpmagiplrafeayaerllkmgfrlavadqvepaeeaeglvrrevtqlltpgtllqesllpreanylaaiatgdgwglafldvstgefkgtvlksksalydelfrhrpaevllapellengafldefrkrfpvmlseapfepegegplalrrargallayaqrtqggalslqpfrfydpgafmrlpeatlralevfeplrgqdtlfsvldetrtapgrrllqswlrhplldrgplearldrvegfvregalregvrrllyrladlerlatrlelgraspkdlgalrrslqilpelrallgeevglpdlsplkeeleaalvedpplkvseggliregydpdldalraahregvayfleleererertgiptlkvgynavfgyylevtrpyyervpkeyrpvqtlkdrqrytlpemkekerevyrlealirrreeevflevrerakrqaealreaarilaeldvyaalaevavrygyvrprfgdrlqiragrhpvverrtefvpndlemahelvlitgpnmagkstflrqtaliallaqvgsfvpaeeahlplfdgiytrigagkstfmvemeevalilkeatenslvlldevgrgtssldgvaiatavaealherraytlfathyfeltalglprlknlhvaareeagglvfyhqvlpgpasksygvevaamaglpkevvararallqamaar/megmlkgegpgplppllqqyvelrdqypdylllfqvgdFyecfgedaerlaralglvlthktskdfttpmagiplrafeayaerllkmgfrlavadqvepvrrevtqlltpgtllqesllpreanylaaiatgdgwglafldvstgefkgtvlksksalydelfrhrpaevllapellengafldefrkrfpvmlseapfepegegplalrrargallayaqrtqggalslqpfrfydpgafmrlpeatlralevfeplrgqdtlfsvldetrtapgrrllqswlrhplldrgplearldrvegfvregalregvrrllyrladlerlatrlelgraspkdlgalrrslqilpelrallgeevglpdlsplkeeleaalvedpplkvseggliregydpdldalraahregvayfleleererertgiptlkvgynavfgyylevtrpyyervpkeyrpvqtlkdrqrytlpemkekerevyrlealirrreeevflevrerakrqaealreaarilaeldvyaalaevavrygyvrprfgdrlqiragrhpvverrtefvpndlemahelvlitgpnmagkstflrqtaliallaqvgsfvpaeeahlplfdgiytrigagkstfmvemeevalilkeatenslvlldevgrgtssldgvaiatavaealherraytlfathyfeltalglprlknlhvaareeagglvfyhqvlpgpasksygvevaamaglpkevvararallqam >1exi_A:Probable_bacterial_effector-binding_domain;Putative_DNA-binding_domain; title=CRYSTAL STRUCTURE OF TRANSCRIPTION ACTIVATOR BMRR, FROM B. SUBTILIS, BOUND TO 21 BASE PAIR BMR OPERATOR AND TPSB organism=Bacillus subtilis DNA sequence DA(M-11) DC(M-10) DC(M-9) DC(M-8) DT(M-7) DC(M-6) DC(M-5) DC(M-4) DC(M-3) DT(M-2) DT(M1) DA(M2) DG(M3) DG(M4) DG(M5) DG(M6) DA(M7) DG(M8) DG(M9) DG(M10) DT(M11) chainA ( 21) ARG23 0 0 0 4 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 40) TYR42 0 3 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence esyysigevsklanvsikalRyydkidlfkpayvdpdtsYryytdsqlihldlikslkyigtpleemkkaqdlemeelfafyteqerqirekldflsaleqtislvkkrmkrqmeypalgevfvldeeeiriiqteaegigpenvlnasysklkkfiesadgftnnsygatfsfqpytsidemtyrhiftpvltnkqissitpdmeittipkgryaciaynfspehyflnlqklikyiadrqltvvsdvyeliipihyspkkqeeyrvemkiria >1exj_A:Probable_bacterial_effector-binding_domain;Putative_DNA-binding_domain; title=CRYSTAL STRUCTURE OF TRANSCRIPTION ACTIVATOR BMRR, FROM B. SUBTILIS, BOUND TO 21 BASE PAIR BMR OPERATOR AND TPP organism=Bacillus subtilis DNA sequence DA(M-11) DC(M-10) DC(M-9) DC(M-8) DT(M-7) DC(M-6) DC(M-5) DC(M-4) DC(M-3) DT(M-2) DT(M1) DA(M2) DG(M3) DG(M4) DG(M5) DG(M6) DA(M7) DG(M8) DG(M9) DG(M10) DT(M11) chainA ( 21) ARG23 0 0 0 3 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 40) TYR42 0 3 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence esyysigevsklanvsikalRyydkidlfkpayvdpdtsYryytdsqlihldlikslkyigtpleemkkaqdlemeelfafyteqerqirekldflsaleqtislvkkrmkrqmeypalgevfvldeeeiriiqteaegigpenvlnasysklkkfiesadgftnnsygatfsfqpytsidemtyrhiftpvltnkqissitpdmeittipkgryaciaynfspehyflnlqklikyiadrqltvvsdvyeliipihyspkkqeeyrvemkiria >1eyu_AB: title=HIGH RESOLUTION STRUCTURE OF THE PVUII ENDONCULEASE/COGNATE DNA COMPLEX AT PH 4.6 organism=Proteus vulgaris DNA sequence DA(C4):DT(D13) DC(C5):DG(D12) DC(C6):DG(D11) DA(C7):DT(D10) DG(C8):DC(D9) DC(C9):DG(D8) DT(C10):DA(D7) DG(C11):DC(D6) DG(C12):DC(D5) DT(C13):DA(D4) DC(C14):DG(D3) chainA ( 33) ASP34 0 0 0 0 2 5 0 0 0 0 0 ( 76) THR77 1 0 0 0 0 0 0 0 0 0 0 ( 80) SER81 0 0 2 8 0 0 0 0 0 0 0 ( 83) HIS84 0 0 0 25 13 0 0 0 0 0 0 (139) ASN140 0 0 14 10 0 0 0 0 0 0 0 (140) ASN141 0 0 9 22 0 0 0 0 0 0 0 (142) LYS143 1 9 10 0 0 0 0 0 0 0 0 chainB ( 33) ASP34 0 0 0 0 6 2 0 0 0 0 0 ( 77) SER81 0 0 0 0 0 0 8 2 0 0 0 ( 80) HIS84 0 0 0 0 0 14 27 0 0 0 0 (136) ASN140 0 0 0 0 0 0 10 14 0 0 0 (137) ASN141 0 0 0 0 0 0 22 9 0 0 0 (139) LYS143 0 0 0 0 0 0 0 10 9 0 0 prot.sequence shpdlnkllelwphiqeyqdlalkhgindifqDnggkllqvllitgltvlpgregndavdnagqeyelksinidlTkgfSthHhmnpviiakyrqvpwifaiyrgiaieaiyrlepkdlefyydkwerkwysdghkdiNNpKipvkyvmehgtkiy/shpdlnkllelwphiqeyqdlalkhgindifQDnggkllqvllitgltvlpgndavdnagqeyelksinidlTkgfSthHhmnpviiakyrqvpwifaiyrgiaieaiyrlepkdlefyydkwerkwysdghkdiNNpKipvkyvmehgtkiy >1eyu_B:Restriction_endonuclease-like; title=HIGH RESOLUTION STRUCTURE OF THE PVUII ENDONCULEASE/COGNATE DNA COMPLEX AT PH 4.6 organism=Proteus vulgaris DNA sequence DA(C4):DT(D13) DC(C5):DG(D12) DC(C6):DG(D11) DA(C7):DT(D10) DG(C8):DC(D9) DC(C9):DG(D8) DT(C10):DA(D7) DG(C11):DC(D6) DG(C12):DC(D5) DT(C13):DA(D4) DC(C14):DG(D3) chainB ( 33) ASP34 0 0 0 0 6 2 0 0 0 0 0 ( 77) SER81 0 0 0 0 0 0 8 2 0 0 0 ( 80) HIS84 0 0 0 0 0 14 27 0 0 0 0 (136) ASN140 0 0 0 0 0 0 10 14 0 0 0 (137) ASN141 0 0 0 0 0 0 22 9 0 0 0 (139) LYS143 0 0 0 0 0 0 0 10 9 0 0 prot.sequence shpdlnkllelwphiqeyqdlalkhgindifQDnggkllqvllitgltvlpgndavdnagqeyelksinidlTkgfSthHhmnpviiakyrqvpwifaiyrgiaieaiyrlepkdlefyydkwerkwysdghkdiNNpKipvkyvmehgtkiy >1f0o_AB: title=PVUII ENDONUCLEASE/COGNATE DNA COMPLEX (GLUTARALDEHYDE-CROSSLINKED CRYSTAL) AT PH 7.5 WITH TWO CALCIUM IONS AT EACH ACTIVE SITE organism=Proteus vulgaris DNA sequence DA(C4):DT(D13) DC(C5):DG(D12) DC(C6):DG(D11) DA(C7):DT(D10) DG(C8):DC(D9) DC(C9):DG(D8) DT(C10):DA(D7) DG(C11):DC(D6) DG(C12):DC(D5) DT(C13):DA(D4) DC(C14):DG(D3) chainA ( 33) ASP34 0 0 0 0 1 7 0 0 0 0 0 ( 78) SER81 0 0 2 11 0 0 0 0 0 0 0 ( 81) HIS84 0 0 0 23 9 0 0 0 0 0 0 (137) ASN140 0 0 13 10 0 0 0 0 0 0 0 (138) ASN141 0 0 8 18 0 0 0 0 0 0 0 (140) LYS143 1 10 10 0 0 0 0 0 0 0 0 chainB ( 30) GLN33 0 0 0 0 2 0 0 0 0 0 0 ( 31) ASP34 0 0 0 0 8 0 0 0 0 0 0 ( 76) SER81 0 0 0 0 0 0 8 2 0 0 0 ( 79) HIS84 0 0 0 0 0 12 24 0 0 0 0 (135) ASN140 0 0 0 0 0 0 10 14 0 0 0 (136) ASN141 0 0 0 0 0 0 20 7 0 0 0 (138) LYS143 0 0 0 0 0 0 0 10 8 1 0 prot.sequence shpdlnkllelwphiqeyqdlalkhgindifqDnggkllqvllitgltvlpegndavdnagqeyelksinidlTkgfSthHhmnpviiakyrqvpwifaiyrgiaieaiyrlepkdlefyydkwerkwysdghkdiNNpKipvkyvmehgtkiy/pdlnkllelwphiqeyqdlalkhgindifQDnggkllqvllitgltvlpegndavdnagqeyelksinidltkgfSthHhmnpviiakyrqvpwifaiyrgiaieaiyrlepkdlefyydkwerkwysdghkdiNNpKipvkyvmehgtkiy >1f0o_B:Restriction_endonuclease-like; title=PVUII ENDONUCLEASE/COGNATE DNA COMPLEX (GLUTARALDEHYDE-CROSSLINKED CRYSTAL) AT PH 7.5 WITH TWO CALCIUM IONS AT EACH ACTIVE SITE organism=Proteus vulgaris DNA sequence DG(D3):DC(C14) DA(D4):DT(C13) DC(D5):DG(C12) DC(D6):DG(C11) DA(D7):DT(C10) DG(D8):DC(C9) DC(D9):DG(C8) DT(D10):DA(C7) DG(D11):DC(C6) DG(D12):DC(C5) DT(D13):DA(C4) chainB ( 30) GLN33 0 0 0 0 0 0 2 0 0 0 0 ( 31) ASP34 0 0 0 0 0 0 8 0 0 0 0 ( 76) SER81 0 0 0 2 8 0 0 0 0 0 0 ( 79) HIS84 0 0 0 0 24 12 0 0 0 0 0 (135) ASN140 0 0 0 14 10 0 0 0 0 0 0 (136) ASN141 0 0 0 7 20 0 0 0 0 0 0 (138) LYS143 0 1 8 10 0 0 0 0 0 0 0 prot.sequence pdlnkllelwphiqeyqdlalkhgindifQDnggkllqvllitgltvlpegndavdnagqeyelksinidltkgfSthHhmnpviiakyrqvpwifaiyrgiaieaiyrlepkdlefyydkwerkwysdghkdiNNpKipvkyvmehgtkiy >1f2i_GH: title=COCRYSTAL STRUCTURE OF SELECTED ZINC FINGER DIMER BOUND TO DNA organism=Mus musculus DNA sequence DA(B2001):DT(A1014) DT(B2002):DA(A1013) DG(B2003):DC(A1012) DG(B2004):DC(A1011) DG(B2005):DC(A1010) DC(B2006):DG(A1009) DG(B2007):DC(A1008) DC(B2008):DG(A1007) DG(B2009):DC(A1006) DC(B2010):DG(A1005) DC(B2011):DG(A1004) DC(B2012):DG(A1003) DA(B2013):DT(A1002) DT(B2014):DA(A1001) chainG ( 26) ARG1118 0 0 0 0 0 0 2 12 20 0 0 0 0 0 ( 28) ASP1120 0 0 0 0 0 0 0 1 1 0 0 0 0 0 ( 29) GLU1121 0 0 0 0 0 0 0 0 5 6 0 0 0 0 ( 32) ARG1124 0 0 0 0 0 0 0 0 8 7 0 0 0 0 ( 54) ARG1146 0 0 0 0 0 0 0 0 0 2 13 18 0 0 ( 56) ASP1148 0 0 0 0 0 0 0 0 3 6 1 0 0 0 ( 57) HIS1149 0 0 0 0 0 0 0 0 0 0 0 12 28 0 chainH ( 26) ARG2118 0 0 0 0 0 20 12 1 0 0 0 0 0 0 ( 28) ASP2120 0 0 0 0 0 1 1 0 0 0 0 0 0 0 ( 29) GLU2121 0 0 0 0 6 4 0 0 0 0 0 0 0 0 ( 32) ARG2124 0 0 0 7 11 4 0 0 0 0 0 0 0 0 ( 54) ARG2146 0 0 17 12 2 0 0 0 0 0 0 0 0 0 ( 56) ASP2148 0 0 0 1 6 4 0 0 0 0 0 0 0 0 ( 57) HIS2149 0 28 11 0 0 0 0 0 0 0 0 0 0 0 prot.sequence nllnyvvpkmrpyacpvescdrrfsRsDEltRhirihtgqkpfqcricmrnfsRsDHltthirtht/nllnyvvpkmrpyacpvescdrrfsRsDEltRhirihtgqkpfqcricmrnfsRsDHltthirtht >1f2i_IJ: title=COCRYSTAL STRUCTURE OF SELECTED ZINC FINGER DIMER BOUND TO DNA organism=Mus musculus DNA sequence DA(D4001):DT(C3014) DT(D4002):DA(C3013) DG(D4003):DC(C3012) DG(D4004):DC(C3011) DG(D4005):DC(C3010) DC(D4006):DG(C3009) DG(D4007):DC(C3008) DC(D4008):DG(C3007) DG(D4009):DC(C3006) DC(D4010):DG(C3005) DC(D4011):DG(C3004) DC(D4012):DG(C3003) DA(D4013):DT(C3002) DT(D4014):DA(C3001) chainI ( 26) ARG3118 0 0 0 0 0 0 3 8 19 0 0 0 0 0 ( 28) ASP3120 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 29) GLU3121 0 0 0 0 0 0 0 0 4 6 0 0 0 0 ( 32) ARG3124 0 0 0 0 0 0 0 0 4 9 4 0 0 0 ( 54) ARG3146 0 0 0 0 0 0 0 0 0 2 10 21 0 0 ( 56) ASP3148 0 0 0 0 0 0 0 0 2 4 0 0 0 0 ( 57) HIS3149 0 0 0 0 0 0 0 0 0 0 0 11 25 0 chainJ ( 26) ARG4118 0 0 0 0 0 22 11 0 0 0 0 0 0 0 ( 28) ASP4120 0 0 0 0 0 1 1 0 0 0 0 0 0 0 ( 29) GLU4121 0 0 0 0 6 4 0 0 0 0 0 0 0 0 ( 32) ARG4124 0 0 0 9 14 4 0 0 0 0 0 0 0 0 ( 54) ARG4146 0 0 16 14 2 0 0 0 0 0 0 0 0 0 ( 56) ASP4148 0 0 0 2 6 5 0 0 0 0 0 0 0 0 ( 57) HIS4149 0 26 10 0 0 0 0 0 0 0 0 0 0 0 prot.sequence nllnyvvpkmrpyacpvescdrrfsRsDEltRhirihtgqkpfqcricmrnfsRSDHltthirtht/nllnyvvpkmrpyacpvescdrrfsRsDEltRhirihtgqkpfqcricmrnfsRsDHltthirtht >1f2i_KL: title=COCRYSTAL STRUCTURE OF SELECTED ZINC FINGER DIMER BOUND TO DNA organism=Mus musculus DNA sequence DA(E5001):DT(F6014) DT(E5002):DA(F6013) DG(E5003):DC(F6012) DG(E5004):DC(F6011) DG(E5005):DC(F6010) DC(E5006):DG(F6009) DG(E5007):DC(F6008) DC(E5008):DG(F6007) DG(E5009):DC(F6006) DC(E5010):DG(F6005) DC(E5011):DG(F6004) DC(E5012):DG(F6003) DA(E5013):DT(F6002) DT(E5014):DA(F6001) chainK ( 23) ARG5118 0 0 0 0 0 19 11 2 0 0 0 0 0 0 ( 25) ASP5120 0 0 0 0 0 1 1 0 0 0 0 0 0 0 ( 26) GLU5121 0 0 0 0 4 5 0 0 0 0 0 0 0 0 ( 29) ARG5124 0 0 0 8 10 4 0 0 0 0 0 0 0 0 ( 51) ARG5146 0 0 15 10 2 0 0 0 0 0 0 0 0 0 ( 53) ASP5148 0 0 0 1 10 4 0 0 0 0 0 0 0 0 ( 54) HIS5149 0 14 11 0 0 0 0 0 0 0 0 0 0 0 chainL ( 26) ARG6118 0 0 0 0 0 0 2 13 24 0 0 0 0 0 ( 28) ASP6120 0 0 0 0 0 0 0 1 1 0 0 0 0 0 ( 29) GLU6121 0 0 0 0 0 0 0 0 4 6 0 0 0 0 ( 32) ARG6124 0 0 0 0 0 0 0 0 4 11 5 0 0 0 ( 54) ARG6146 0 0 0 0 0 0 0 0 0 2 9 17 0 0 ( 56) ASP6148 0 0 0 0 0 0 0 0 3 5 2 0 0 0 ( 57) HIS6149 0 0 0 0 0 0 0 0 0 0 0 11 25 0 prot.sequence nyvvpkmrpyacpvescdrrfsRsDEltRhirihtgqkpfqcricmrnfsRsDHltthirtht/nllnyvvpkmrpyacpvescdrrfsRsDEltRhirihtgqkpfqcricmrnfsRsDHltthirtht >1f44_A:DNA_breaking-rejoining_enzymes;lambda_integrase-like,_N-terminal_domain; title=CRYSTAL STRUCTURE OF TRIMERIC CRE RECOMBINASE-LOX COMPLEX organism=Enterobacteria phage P1 DNA sequence DG(N5):DC(M16) DC(N6):DG(M15) DT(N7):DA(M14) DA(N8):DT(M13) DT(N9):DA(M12) DA(N10):DT(M11) DC(N11):DG(M10) DG(N12):DC(M9) DA(N13):DT(M8) DA(N14):DT(M7) DG(N15):DC(M6) DT(N16):DA(M5) DT(N17):DA(M4) DA(N18):DT(M3) DT(N19):DA(M2) chainA ( 21) HIS40 0 0 0 5 5 0 0 0 0 0 0 0 0 0 0 ( 22) THR41 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 ( 24) LYS43 0 0 0 0 0 2 5 1 0 0 0 0 0 0 0 ( 25) MET44 0 0 0 6 7 4 0 0 0 0 0 0 0 0 0 ( 28) SER47 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 ( 67) LYS86 0 0 11 0 0 0 0 0 0 0 0 0 0 0 0 ( 68) THR87 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 ( 71) GLN90 0 0 7 10 0 0 0 0 0 0 0 0 0 0 0 ( 75) GLN94 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 (214) ARG241 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 (216) ARG243 0 0 0 0 0 0 0 0 0 0 0 0 7 3 0 (217) LYS244 0 0 0 0 0 0 0 0 0 0 0 0 2 11 8 (230) SER257 0 0 0 0 0 0 0 0 2 3 0 0 0 0 0 (232) ARG259 0 0 0 0 0 0 13 14 8 2 0 0 0 0 0 (235) GLU262 0 0 0 0 0 5 4 0 0 0 0 0 0 0 0 (255) ARG282 0 0 0 0 8 5 0 0 0 0 0 0 0 0 0 (293) ILE320 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence sdevrknlmdmfrdrqafseHTwKMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmlihigrgvekalslgvtklverwisvsgvaddpnnylfcRvRKngvaapsatsqlStRalEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtnvnIvmnfirnldsetgamvrlledgd >1f4k_AB: title=CRYSTAL STRUCTURE OF THE REPLICATION TERMINATOR PROTEIN/B-SITE DNA COMPLEX organism=Bacillus subtilis DNA sequence DC(D1):DG(E21) DT(D2):DA(E20) DA(D3):DT(E19) DT(D4):DA(E18) DG(D5):DC(E17) DA(D6):DT(E16) DA(D7):DT(E15) DC(D8):DG(E14) DA(D9):DT(E13) DT(D10):DA(E12) DA(D11):DT(E11) DA(D12):DT(E10) DT(D13):DA(E9) DG(D14):DC(E8) DT(D15):DA(E7) DT(D16):DA(E6) DC(D17):DG(E5) DA(D18):DT(E4) DT(D19):DA(E3) DA(D20):DT(E2) DG(D21):DC(E1) chainA ( 9) ARG16 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 ( 28) LEU35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 2 0 0 ( 46) ASN53 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4 0 0 0 0 0 0 ( 47) HIS54 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 8 2 0 0 0 ( 48) THR55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 4 0 0 0 0 0 ( 49) GLU56 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 51) TYR58 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 10 0 0 0 ( 52) ARG59 0 0 0 0 0 0 0 0 0 0 0 0 20 11 0 0 0 0 0 0 0 chainB ( 9) ARG16 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) LEU35 0 0 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) ASN53 0 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 47) HIS54 0 0 0 5 8 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 48) THR55 0 0 0 0 0 4 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 49) GLU56 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 ( 51) TYR58 0 0 0 10 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 52) ARG59 0 0 0 0 0 0 1 12 19 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence stgflvkqRaflklymitmteqerlygLkllevlrsefkeigfkpNHTEvYRslhellddgilkqikvkkegaklqevvlyqfkdyeaaklykkqlkveldrskkliekalsdnf/stgflvkqRaflklymitmteqerlygLkllevlrsefkeigfkpNHTEvYRslhellddgilkqikvkkegaklqevvlyqfkdyeaaklykkqlkveldrskkliekalsdnf >1f4r_A:FMT_C-terminal_domain-like; title=CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH 1,N6-ETHENOADENINE-DNA organism=Homo sapiens DNA sequence DG(D1):DC(E25) DA(D2):DT(E24) DC(D3):DG(E23) DA(D4):DT(E22) DT(D5):DA(E21) DG(D6):DC(E20) EDA(D7):DT(E19) DT(D8):DA(E18) DT(D9):DA(E17) DG(D10):DC(E16) DC(D11):DG(E15) chainA ( 46) TYR127 0 0 0 0 0 0 51 0 0 0 0 ( 54) ALA135 0 0 0 0 0 0 2 0 0 0 0 ( 55) HIS136 0 0 0 0 0 0 19 0 0 0 0 ( 68) MET149 0 0 0 0 0 0 3 0 0 0 0 ( 76) TYR157 0 0 0 0 0 0 3 0 0 0 0 ( 78) TYR159 0 0 0 0 0 0 15 0 0 0 0 ( 81) TYR162 0 0 0 0 0 28 0 47 0 0 0 ( 83) MET164 0 0 0 0 0 0 1 6 0 0 0 ( 84) TYR165 0 0 0 0 0 0 0 5 2 0 0 ( 88) ASN169 0 0 0 0 0 0 10 0 0 0 0 ( 97) CYS178 0 0 0 0 0 0 2 0 0 0 0 ( 99) LEU180 0 0 0 0 0 0 8 0 0 0 0 prot.sequence hltrlgleffdqpavplaraflgqvlvrrlpngtelrgriveteaylgpedeaahsrggrqtprnrgmfmkpgtlyvyiiYgMYfcmnissqgdgacvllraleplegletmrqlrstvlkdrelcsgpsklcqalainksfdqrdlaqdeavwlergpavvaaarvgvghagewarkplrfyvrgspwvsvvdrvaeq >1f4s_P:Zn2/Cys6_DNA-binding_domain; title=STRUCTURE OF TRANSCRIPTIONAL FACTOR ALCR IN COMPLEX WITH A TARGET DNA organism=EMERICELLA NIDULANS DNA sequence DG(B1):DC(A10) DA(B2):DT(A9) DT(B3):DA(A8) DC(B4):DG(A7) DC(B5):DG(A6) DG(B6):DC(A5) DC(B7):DG(A4) DA(B8):DT(A3) DC(B9):DG(A2) DG(B10):DC(A1) chainP ( 3) MET1 4 15 2 0 0 0 0 0 0 0 ( 7) ARG5 0 0 26 12 0 0 0 0 0 0 ( 8) ARG6 5 12 9 0 0 0 0 0 0 0 ( 18) ARG16 0 0 1 0 0 0 0 0 0 0 ( 21) LYS19 0 0 0 17 24 8 0 0 0 0 ( 22) ARG20 0 0 0 0 6 24 1 0 0 0 ( 23) ARG21 0 0 0 4 4 0 0 0 0 0 ( 46) ARG44 0 0 0 0 0 0 0 14 14 0 ( 47) TRP45 0 0 0 0 0 0 13 19 2 0 prot.sequence gsMadtRRrqnhscdpcRkgKRRcdapenrneanengwvscsnckRWnkdctfnwlssqrsknss >1f5t_ABCD: title=DIPHTHERIA TOX REPRESSOR (C102D MUTANT) COMPLEXED WITH NICKEL AND DTXR CONSENSUS BINDING SEQUENCE organism=Corynebacterium diphtheriae DNA sequence DA(F398):DT(E337) DA(F399):DT(E336) DC(F400):DG(E335) DA(F401):DT(E334) DT(F402):DA(E333) DG(F403):DC(E332) DC(F404):DG(E331) DA(F405):DT(E330) DA(F406):DT(E329) DG(F407):DC(E328) DG(F408):DC(E327) DC(F409):DG(E326) DT(F410):DA(E325) DA(F411):DT(E324) DA(F412):DT(E323) DG(F413):DC(E322) DG(F414):DC(E321) DT(F415):DA(E320) DT(F416):DA(E319) DA(F417):DT(E318) DG(F418):DC(E317) DG(F419):DC(E316) DC(F420):DG(E315) DT(F421):DA(E314) DA(F422):DT(E313) DA(F423):DT(E312) DC(F424):DG(E311) DC(F425):DG(E310) DT(F426):DA(E309) DT(F427):DA(E308) DA(F428):DT(E307) DG(F429):DC(E306) DC(F430):DG(E305) DC(F431):DG(E304) DT(F432):DA(E303) DT(F433):DA(E302) DG(F434):DC(E301) DC(F435):DG(E300) DA(F436):DT(E299) DT(F437):DA(E298) DG(F438):DC(E297) chainA ( 36) SER1037 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 38) PRO1039 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 39) THR1040 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 42) GLN1043 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) ARG1047 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 1) LYS2002 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 36) SER2037 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 38) PRO2039 0 0 0 0 0 0 0 0 0 0 0 0 0 3 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 39) THR2040 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 41) SER2042 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 42) GLN2043 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) ARG2047 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainC ( 36) SER3037 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 38) PRO3039 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 3 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 39) THR3040 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 41) SER3042 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 42) GLN3043 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 9 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) ARG3047 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainD ( 1) LYS4002 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 36) SER4037 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 ( 38) PRO4039 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 3 0 0 0 0 0 0 0 0 0 0 0 ( 39) THR4040 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 3 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 41) SER4042 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 ( 42) GLN4043 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) ARG4047 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence kdlvdttemylrtiyeleeegvtplrariaerleqSgPTvsQtvaRmerdglvvvasdrslqmtptgrtlatavmrkhrlaerlltdiigldinkvhdeadrwehvmsdeverrlvkvlk/KdlvdttemylrtiyeleeegvtplrariaerleqSgPTvSQtvaRmerdglvvvasdrslqmtptgrtlatavmrkhrlaerlltdiigldinkvhdeadrwehvmsdeverrlvkvlk/kdlvdttemylrtiyeleeegvtplrariaerleqSgPTvSQtvaRmerdglvvvasdrslqmtptgrtlatavmrkhrlaerlltdiigldinkvhdeadrwehvmsdeverrlvkvlk/KdlvdttemylrtiyeleeegvtplrariaerleqSgPTvSQtvaRmerdglvvvasdrslqmtptgrtlatavmrkhrlaerlltdiigldinkvhdeadrwehvmsdeverrlvkvlk >1f66_ABCDEFGH:Histone-fold;lambda_repressor-like_DNA-binding_domains;p53-like_transcription_factors;Nucleic_acid-binding_proteins;P-loop_containing_nucleoside_triphosphate_hydrolases; title=2.6 A CRYSTAL STRUCTURE OF A NUCLEOSOME CORE PARTICLE CONTAINING THE VARIANT HISTONE H2A.Z organism=HOMO SAPIENS / XENOPUS LAEVIS / MUS MUSCULUS DNA sequence DA(I1):DT(J292) DT(I2):DA(J291) DC(I3):DG(J290) DA(I4):DT(J289) DA(I5):DT(J288) DT(I6):DA(J287) DA(I7):DT(J286) DT(I8):DA(J285) DC(I9):DG(J284) DC(I10):DG(J283) DA(I11):DT(J282) DC(I12):DG(J281) DC(I13):DG(J280) DT(I14):DA(J279) DG(I15):DC(J278) DC(I16):DG(J277) DA(I17):DT(J276) DG(I18):DC(J275) DA(I19):DT(J274) DT(I20):DA(J273) DC(I22):DG(J271) DT(I23):DA(J270) DA(I24):DT(J269) DC(I25):DG(J268) DC(I26):DG(J267) DA(I27):DT(J266) DA(I28):DT(J265) DA(I29):DT(J264) DA(I30):DT(J263) DG(I31):DC(J262) DT(I32):DA(J261) DG(I33):DC(J260) DT(I34):DA(J259) DA(I35):DT(J258) DT(I36):DA(J257) DT(I37):DA(J256) DT(I38):DA(J255) DG(I39):DC(J254) DG(I40):DC(J253) DA(I41):DT(J252) DA(I42):DT(J251) DA(I43):DT(J250) DC(I44):DG(J249) DT(I45):DA(J248) DG(I46):DC(J247) DC(I47):DG(J246) DT(I48):DA(J245) DC(I49):DG(J244) DC(I50):DG(J243) DA(I51):DT(J242) DT(I52):DA(J241) DC(I53):DG(J240) DA(I54):DT(J239) DA(I55):DT(J238) DA(I56):DT(J237) DA(I57):DT(J236) DG(I58):DC(J235) DG(I59):DC(J234) DC(I60):DG(J233) DA(I61):DT(J232) DT(I62):DA(J231) DG(I63):DC(J230) DT(I64):DA(J229) DT(I65):DA(J228) DC(I66):DG(J227) DA(I67):DT(J226) DG(I68):DC(J225) DC(I69):DG(J224) DG(I70):DC(J223) DG(I71):DC(J222) DA(I72):DT(J221) DA(I73):DT(J220) DT(I74):DA(J219) DT(I75):DA(J218) DC(I76):DG(J217) DC(I77):DG(J216) DG(I78):DC(J215) DC(I79):DG(J214) DT(I80):DA(J213) DG(I81):DC(J212) DA(I82):DT(J211) DA(I83):DT(J210) DC(I84):DG(J209) DA(I85):DT(J208) DT(I86):DA(J207) DG(I87):DC(J206) DC(I88):DG(J205) DC(I89):DG(J204) DT(I90):DA(J203) DT(I91):DA(J202) DT(I92):DA(J201) DT(I93):DA(J200) DG(I94):DC(J199) DA(I95):DT(J198) DT(I96):DA(J197) DG(I97):DC(J196) DG(I98):DC(J195) DA(I99):DT(J194) DG(I100):DC(J193) DC(I101):DG(J192) DA(I102):DT(J191) DG(I103):DC(J190) DT(I104):DA(J189) DT(I105):DA(J188) DT(I106):DA(J187) DC(I107):DG(J186) DC(I108):DG(J185) DA(I109):DT(J184) DA(I110):DT(J183) DA(I111):DT(J182) DT(I112):DA(J181) DA(I113):DT(J180) DC(I114):DG(J179) DA(I115):DT(J178) DC(I116):DG(J177) DT(I117):DA(J176) DT(I118):DA(J175) DT(I119):DA(J174) DT(I120):DA(J173) DG(I121):DC(J172) DG(I122):DC(J171) DT(I123):DA(J170) DA(I124):DT(J169) DG(I125):DC(J168) DA(I126):DT(J167) DA(I127):DT(J166) DT(I128):DA(J165) DC(I129):DG(J164) DT(I130):DA(J163) DG(I131):DC(J162) DC(I132):DG(J161) DA(I133):DT(J160) DG(I134):DC(J159) DG(I135):DC(J158) DT(I136):DA(J157) DG(I137):DC(J156) DG(I138):DC(J155) DA(I139):DT(J154) DT(I140):DA(J153) DA(I141):DT(J152) DT(I142):DA(J151) DT(I143):DA(J150) DG(I144):DC(J149) DA(I145):DT(J148) DT(I146):DA(J147) chainA ( 5) ARG440 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 30) LEU465 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 48) ARG483 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 23) ARG45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainC chainD chainE ( 8) ARG640 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 9) TYR641 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 33) LEU665 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 51) ARG683 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainF ( 16) PRO232 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) ARG245 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainG ( 30) ARG1045 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainH ( 3) ARG1430 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 8 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence kkphRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera/rdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/avsrsqraglqfpvgrihrhlkSrttshgrvgataavysaaileyltaevlelagnaskdlkvkritprhlqlairgdeeldslikatiagggviphihksli/ktrkesyaiyvykvlkqvhpdtGisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak/gevkkphRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera/rhrkvlrdniqgitkPairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/avsrsqraglqfpvgrihrhlksrttshgRvgataavysaaileyltaevlelagnaskdlkvkritprhlqlairgdeeldslikatiagggviphihksligkkg/ktRkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak >1f6o_A:FMT_C-terminal_domain-like; title=CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH DNA organism=Homo sapiens DNA sequence DG(E14):DC(D12) DG(E15):DC(D11) DC(E16):DG(D10) DA(E17):DT(D9) DA(E18):DT(D8) DT(E19):YRR(D7) DC(E20):DG(D6) DA(E21):DT(D5) DT(E22):DA(D4) DG(E23):DC(D3) DT(E24):DA(D2) DC(E25):DG(D1) chainA ( 83) TYR162 0 0 0 0 90 1 19 0 0 0 0 0 ( 85) MET164 0 0 0 0 6 3 0 0 0 0 0 0 ( 86) TYR165 0 0 0 1 10 0 0 0 0 0 0 0 prot.sequence kghltrlgleffdqpavplaraflgqvlvrrlpngtelrgriveteaylgpedeaahsrggrqtprnrgmfmkpgtlyvyiiYgMYfcmnissqgdgacvllraleplegletmrqlrstlsrvlkdrelcsgpsklcqalainksfdqrdlaqdeavwlergplepsepavvaaarvgvghagewarkplrfyvrgspwvsvvdrvaeqd >1fjx_A:S-adenosyl-L-methionine-dependent_methyltransferases; title=STRUCTURE OF TERNARY COMPLEX OF HHAI METHYLTRANSFERASE MUTANT (T250G) IN COMPLEX WITH DNA AND ADOHCY organism=HAEMOPHILUS HAEMOLYTICUS DNA sequence DG(D422):DC(C413) DA(D423):DT(C412) DT(D424):DA(C411) DA(D425):DT(C410) DG(D426):DC(C409) DG(D428):DC(C407) DC(D429):DG(C406) DT(D430):DA(C405) DA(D431):DT(C404) DT(D432):DA(C403) DC(D433):DG(C402) chainA ( 86) ILE86 0 0 1 5 1 0 0 0 0 0 0 ( 87) SER87 0 0 0 0 8 8 0 0 0 0 0 (228) ARG228 0 0 0 2 0 0 0 0 0 0 0 (237) GLN237 0 0 0 0 30 26 0 0 0 0 0 (239) GLU239 0 0 0 0 0 3 1 0 0 0 0 (240) ARG240 0 0 0 11 8 0 0 0 0 0 0 (254) TYR254 0 0 0 0 0 0 1 0 0 0 0 (260) ALA260 0 0 0 0 0 0 0 1 0 0 0 (296) SER296 0 0 0 0 0 0 0 0 1 0 0 prot.sequence mieikdkqltglrfidlfaglggfrlalescgaecvysnewdkyaqevyemnfgekpegditqvnektipdhdilcagfpcqafsISgkqkgfedsrgtlffdiarivrekkpkvvfmenvknfashdngntlevvkntmneldysfhakvlnaldygipqkreriymicfrndlniqnfqfpkpfelntfvkdlllpdsevehlvidrkdlvmtnqeieqttpktvRlgivgkggQgERiystrgiaiglsaYgggifAktggylvngktrklhprecarvmgypdsykvhpstSqaykqfgnsvvinvlqyiaynigsslnfkpy >1fn7_A:DNA-glycosylase;TATA-box_binding_protein-like; title=COUPLING OF DAMAGE RECOGNITION AND CATALYSIS BY A HUMAN BASE-EXCISION DNA REPAIR PROTEIN organism=Homo sapiens DNA sequence DG(C1):DC(D30) DG(C2):DC(D29) DT(C3):DA(D28) DA(C4):DT(D27) DG(C5):DC(D26) DA(C6):DT(D25) DC(C7):DG(D24) DC(C8):3DR(D23) DT(C9):DA(D22) DG(C10):DC(D21) DG(C11):DC(D20) DA(C12):DT(D19) DC(C13):DG(D18) DG(C14):DC(D17) DC(C15):DG(D16) chainA (138) ASN149 0 0 0 0 0 0 72 5 6 0 0 0 0 0 0 (139) ASN150 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 (140) ASN151 0 0 0 0 0 0 0 0 5 1 0 0 0 0 0 (143) ARG154 0 0 0 0 0 0 0 10 14 0 0 0 0 0 0 (192) TYR203 0 0 0 0 0 0 20 17 0 0 0 0 0 0 0 (193) ARG204 0 0 0 0 0 0 0 13 0 0 0 0 0 0 0 prot.sequence gseghrtlastpalwasipcprselrldlvlpsgqsfrwreqspahwsgvladqvwtltqteeqlhctvyrsqasrptpdeleavrkyfqldvtlaqlyhhwgsvdshfqevaqkfqgvrllrqdpieclfsficssNNNiaRitgmverlcqafgprliqlddvtyhgfpslqalagpeveahlrklglgYRaryvsasaraileeqgglawlqqlressyeeahkalcilpgvgtkvadciclmaldkpqavpvdvhmwhiaqrdyswhpttsqakgpspqtnkelgnffrslwgpyagwaqavlfsadlrq >1fos_EF: title=TWO HUMAN C-FOS:C-JUN:DNA COMPLEXES organism=HOMO SAPIENS DNA sequence DT(B22):DA(A20) DC(B23):DG(A19) DT(B24):DA(A18) DC(B25):DG(A17) DC(B26):DG(A16) DT(B27):DA(A15) DA(B28):DT(A14) DT(B29):DA(A13) DG(B30):DC(A12) DA(B31):DT(A11) DC(B32):DG(A10) DT(B33):DA(A9) DC(B34):DG(A8) DA(B35):DT(A7) DT(B36):DA(A6) DC(B37):DG(A5) DC(B38):DG(A4) DA(B39):DT(A3) DT(B40):DA(A2) chainE ( 9) ASN147 0 0 0 0 0 0 1 8 5 2 0 0 0 0 0 0 0 0 0 ( 12) ALA150 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 ( 13) ALA151 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 ( 17) ARG155 0 0 0 0 0 0 0 0 0 1 9 15 0 0 0 0 0 0 0 chainF ( 6) ASN271 0 0 0 0 0 0 0 0 0 0 0 3 5 2 1 0 0 0 0 ( 9) ALA274 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 10) ALA275 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 ( 14) ARG279 0 0 0 0 0 0 0 0 0 7 11 4 0 0 0 0 0 0 0 prot.sequence krrirrerNkmAAaksRnrrreltdtlqaetdqledeksalqteianllkekeklefila/rkrmrNriAAsksRkrkleriarleekvktlkaqnselastanmlreqvaqlkqkvm >1fos_GH: title=TWO HUMAN C-FOS:C-JUN:DNA COMPLEXES organism=HOMO SAPIENS DNA sequence DT(D22):DA(C20) DC(D23):DG(C19) DT(D24):DA(C18) DC(D25):DG(C17) DC(D26):DG(C16) DT(D27):DA(C15) DA(D28):DT(C14) DT(D29):DA(C13) DG(D30):DC(C12) DA(D31):DT(C11) DC(D32):DG(C10) DT(D33):DA(C9) DC(D34):DG(C8) DA(D35):DT(C7) DT(D36):DA(C6) DC(D37):DG(C5) DC(D38):DG(C4) DA(D39):DT(C3) DT(D40):DA(C2) chainG ( 4) ARG143 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 ( 8) ASN147 0 0 0 0 0 0 0 0 0 0 0 3 6 9 2 0 0 0 0 ( 11) ALA150 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 12) ALA151 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 ( 16) ARG155 0 0 0 0 0 0 0 0 0 16 6 0 0 0 0 0 0 0 0 chainH ( 7) ASN271 0 0 0 0 0 0 1 2 8 5 0 0 0 0 0 0 0 0 0 ( 10) ALA274 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 ( 11) ALA275 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 ( 14) SER278 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 ( 15) ARG279 0 0 0 0 0 0 0 0 0 4 12 15 0 0 0 0 0 0 0 prot.sequence rriRrerNkmAAaksRnrrreltdtlqaetdqledeksalqteianllkekeklefila/erkrmrNriAAskSRkrkleriarleekvktlkaqnselastanmlreqvaqlkqkvm >1fos_H:Leucine_zipper_domain;A_DNA-binding_domain_in_eukaryotic_transcription_factors; title=TWO HUMAN C-FOS:C-JUN:DNA COMPLEXES organism=HOMO SAPIENS DNA sequence DT(D22):DA(C20) DC(D23):DG(C19) DT(D24):DA(C18) DC(D25):DG(C17) DC(D26):DG(C16) DT(D27):DA(C15) DA(D28):DT(C14) DT(D29):DA(C13) DG(D30):DC(C12) DA(D31):DT(C11) DC(D32):DG(C10) DT(D33):DA(C9) DC(D34):DG(C8) DA(D35):DT(C7) DT(D36):DA(C6) DC(D37):DG(C5) DC(D38):DG(C4) DA(D39):DT(C3) DT(D40):DA(C2) chainH ( 7) ASN271 0 0 0 0 0 0 1 2 8 5 0 0 0 0 0 0 0 0 0 ( 10) ALA274 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 ( 11) ALA275 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 ( 14) SER278 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 ( 15) ARG279 0 0 0 0 0 0 0 0 0 4 12 15 0 0 0 0 0 0 0 prot.sequence erkrmrNriAAskSRkrkleriarleekvktlkaqnselastanmlreqvaqlkqkvm >1fw6_AB: title=CRYSTAL STRUCTURE OF A TAQ MUTS-DNA-ADP TERNARY COMPLEX organism=Thermus aquaticus DNA sequence DC(C1902):DG(D1972) DG(C1903):DC(D1971) DA(C1904):DT(D1970) DC(C1905):DG(D1969) DG(C1906):DC(D1968) DC(C1907):DG(D1967) DT(C1908):DA(D1966) DA(C1909):DT(D1965) DG(C1910):DC(D1964) DC(C1911):DG(D1963) DG(C1912):DC(D1962) DG(C1914):DC(D1961) DC(C1915):DG(D1960) DG(C1916):DC(D1959) DG(C1917):DC(D1958) DC(C1918):DG(D1957) DT(C1919):DA(D1956) DC(C1920):DG(D1955) DG(C1921):DC(D1954) DT(C1922):DA(D1953) DC(C1923):DG(D1952) chainA ( 39) PHE39 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 0 chainB prot.sequence megmlkgegpgplppllqqyvelrdqypdylllfqvgdFyecfgedaerlaralglvlthktskdfttpmagiplrafeayaerllkmgfrlavadqvepaeeaeglvrrevtqlltpgtllqesllpreanylaaiatgdgwglafldvstgefkgtvlksksalydelfrhrpaevllapellengafldefrkrfpvmlseapfepegegplalrrargallayaqrtqggalslqpfrfydpgafmrlpeatlralevfeplrgqdtlfsvldetrtapgrrllqswlrhplldrgplearldrvegfvregalregvrrllyrladlerlatrlelgraspkdlgalrrslqilpelrallgeevglpdlsplkeeleaalvedpplkvseggliregydpdldalraahregvayfleleererertgiptlkvgynavfgyylevtrpyyervpkeyrpvqtlkdrqrytlpemkekerevyrlealirrreeevflevrerakrqaealreaarilaeldvyaalaevavrygyvrprfgdrlqiragrhpvverrtefvpndlemahelvlitgpnmagkstflrqtaliallaqvgsfvpaeeahlplfdgiytrigagkstfmvemeevalilkeatenslvlldevgrgtssldgvaiatavaealherraytlfathyfeltalglprlknlhvaareeagglvfyhqvlpgpasksygvevaamaglpkevvararallqamaar/megmlkgegpgplppllqqyvelrdqypdylllfqvgdFyecfgedaerlaralglvlthktskdfttpmagiplrafeayaerllkmgfrlavadqvepvrrevtqlltpgtllqesllpreanylaaiatgdgwglafldvstgefkgtvlksksalydelfrhrpaevllapellengafldefrkrfpvmlseapfepegegplalrrargallayaqrtqggalslqpfrfydpgafmrlpeatlralevfeplrgqdtlfsvldetrtapgrrllqswlrhplldrgplearldrvegfvregalregvrrllyrladlerlatrlelgraspkdlgalrrslqilpelrallgeevglpdlsplkeeleaalvedpplkvseggliregydpdldalraahregvayfleleererertgiptlkvgynavfgyylevtrpyyervpkeyrpvqtlkdrqrytlpemkekerevyrlealirrreeevflevrerakrqaealreaarilaeldvyaalaevavrygyvrprfgdrlqiragrhpvverrtefvpndlemahelvlitgpnmagkstflrqtaliallaqvgsfvpaeeahlplfdgiytrigagkstfmvemeevalilkeatenslvlldevgrgtssldgvaiatavaealherraytlfathyfeltalglprlknlhvaareeagglvfyhqvlpgpasksygvevaamaglpkevvararallqam >1g2d_F:beta-beta-alpha_zinc_fingers; title=STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (CLONE #2) organism=Mus musculus DNA sequence DT(E68):DA(D66) DC(E69):DG(D65) DC(E70):DG(D64) DT(E71):DA(D63) DT(E72):DA(D62) DT(E73):DA(D61) DT(E74):DA(D60) DA(E75):DT(D59) DT(E76):DA(D58) DA(E77):DT(D57) DG(E78):DC(D56) DC(E79):DG(D55) DG(E80):DC(D54) DT(E81):DA(D53) DC(E82):DG(D52) chainF ( 18) GLN218 0 0 1 10 6 0 0 0 0 0 0 0 0 0 0 ( 20) THR220 0 0 5 9 0 0 0 0 0 0 0 0 0 0 0 ( 21) ASN221 0 0 0 0 10 7 0 0 0 0 0 0 0 0 0 ( 46) GLN246 0 0 0 0 0 2 11 16 0 0 0 0 0 0 0 ( 47) HIS247 0 0 0 0 10 5 0 0 0 0 0 0 0 0 0 ( 48) THR248 0 0 0 0 0 7 10 3 0 0 0 0 0 0 0 ( 52) GLN252 0 0 0 0 0 0 0 2 10 9 0 0 0 0 0 ( 74) THR274 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 ( 75) LEU275 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 ( 76) HIS276 0 0 0 0 0 0 0 0 9 16 8 0 0 0 0 ( 77) THR277 0 0 0 0 0 0 0 0 0 0 5 4 0 0 0 ( 79) ASP279 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 ( 80) ARG280 0 0 0 0 0 0 0 0 0 0 10 11 20 0 0 prot.sequence merpyacpvescdrrfsQkTNldthirihtgqkpfqcricmrnfsQHTglnQhirthtgekpfacdicgrkfaTLHTrDRhtkihlrq >1g38_A:DNA_methylase_specificity_domain;S-adenosyl-L-methionine-dependent_methyltransferases; title=ADENINE-SPECIFIC METHYLTRANSFERASE M. TAQ I/DNA COMPLEX organism=Thermus aquaticus DNA sequence DG(C701):DC(B610) DA(C702):DT(B609) DC(C703):DG(B608) DA(C704):DT(B607) DT(C705):DA(B606) DC(C706):DG(B605) DG(C707):DC(B604) 6MA(C708):DT(B603) DA(C709):DT(B602) DC(C710):DG(B601) chainA ( 1) VAL21 0 0 0 0 8 0 0 0 0 0 ( 85) ASN105 0 0 0 0 10 0 0 0 0 0 ( 88) TYR108 0 0 0 0 50 0 0 0 0 0 ( 96) LYS116 0 0 0 0 0 6 6 0 0 0 ( 97) TYR117 0 0 0 0 0 0 5 6 0 0 (119) LYS139 0 0 0 0 0 0 5 7 0 0 (176) PHE196 0 0 0 0 12 0 0 0 0 0 (179) LYS199 0 0 0 0 7 0 0 0 0 0 (180) LYS200 0 3 8 36 0 0 0 0 0 0 (181) VAL201 0 0 0 0 1 0 0 0 0 0 (248) PHE268 0 0 0 0 0 0 0 4 0 0 (251) ARG271 0 0 0 0 0 3 10 15 10 0 (252) SER272 0 0 0 0 0 0 3 0 0 0 (253) PRO273 0 0 0 0 0 0 1 2 0 0 (254) GLU274 0 0 0 0 0 0 0 0 1 0 (276) ARG296 0 0 2 0 0 0 0 0 0 0 (303) ARG323 0 0 0 0 0 0 0 0 1 0 (315) HIS335 0 0 0 0 0 0 4 0 0 0 (316) THR336 0 0 0 4 3 2 0 0 0 0 (333) ARG353 0 0 0 0 0 1 0 0 0 0 (334) GLU354 0 0 0 0 0 9 0 0 0 0 (373) PRO393 0 0 0 22 2 2 0 0 0 0 (374) HIS394 0 0 0 0 2 11 4 0 0 0 prot.sequence VetppevvdfmvslaeaprggrvlepacahgpflrafreahgtgyrfvgveidpkaldlppwaegiladfllwepgeafdlilgNppYgivgeasKYpihvfkavkdlykkafstwkgKynlygaflekavrllkpggvlvfvvpatwlvledfallreflaregktsvyylgevFpqKKVsavvirfqksgkglslwdtqesesgftpilwaeyphwegeiirfeteetrkleisgmplgdlfhirFaaRSPEfkkhpavrkepgpglvpvltgRnlkpgwvdyeknhsglwmpkerakelRdfyatphlvvaHTkgtrvvaawderaypwREefhllpkegvrldpsslvqwlnseamqkhvrtlyrdfvPHltlrmlerlpvrreygfht >1g9y_A:Homing_endonucleases; title=HOMING ENDONUCLEASE I-CREI / DNA SUBSTRATE COMPLEX WITH CALCIUM organism=Chlamydomonas reinhardtii DNA sequence DC(C401):DG(D524) DG(C402):DC(D523) DA(C403):DT(D522) DA(C404):DT(D521) DA(C405):DT(D520) DC(C406):DG(D519) DT(C407):DA(D518) DG(C408):DC(D517) DT(C409):DA(D516) DC(C410):DG(D515) DT(C411):DA(D514) DC(C412):DG(D513) DA(C413):DT(D512) DC(C414):DG(D511) DG(C415):DC(D510) DA(C416):DT(D509) DC(C417):DG(D508) DG(C418):DC(D507) DT(C419):DA(D506) DT(C420):DA(D505) DT(C421):DA(D504) DT(C422):DA(D503) DG(C423):DC(D502) DC(C424):DG(D501) chainA ( 21) SER22 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 23) ILE24 0 0 0 0 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) GLN26 0 0 0 0 0 0 4 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 27) LYS28 0 0 0 0 2 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) ASN30 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 31) SER32 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 32) TYR33 0 12 9 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 37) GLN38 0 0 3 10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 43) GLN44 0 0 0 0 0 0 0 0 6 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 45) THR46 0 0 0 0 0 0 0 0 0 5 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 65) TYR66 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 67) ARG68 0 0 0 0 0 0 9 13 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 69) ARG70 0 0 0 0 0 0 0 0 16 13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 72) VAL73 0 0 0 0 0 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 0 (138) LYS139 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 (139) THR140 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence ntkynkefllylagfvdgdgSiIaQiKpNqSYkfkhQlsltfQvTqktqrrwfldklvdeigvgYvRdRgsVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld >1g9y_AB:Homing_endonucleases; title=HOMING ENDONUCLEASE I-CREI / DNA SUBSTRATE COMPLEX WITH CALCIUM organism=Chlamydomonas reinhardtii DNA sequence DC(C401):DG(D524) DG(C402):DC(D523) DA(C403):DT(D522) DA(C404):DT(D521) DA(C405):DT(D520) DC(C406):DG(D519) DT(C407):DA(D518) DG(C408):DC(D517) DT(C409):DA(D516) DC(C410):DG(D515) DT(C411):DA(D514) DC(C412):DG(D513) DA(C413):DT(D512) DC(C414):DG(D511) DG(C415):DC(D510) DA(C416):DT(D509) DC(C417):DG(D508) DG(C418):DC(D507) DT(C419):DA(D506) DT(C420):DA(D505) DT(C421):DA(D504) DT(C422):DA(D503) DG(C423):DC(D502) DC(C424):DG(D501) chainA ( 21) SER22 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 23) ILE24 0 0 0 0 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) GLN26 0 0 0 0 0 0 4 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 27) LYS28 0 0 0 0 2 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) ASN30 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 31) SER32 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 32) TYR33 0 12 9 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 37) GLN38 0 0 3 10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 43) GLN44 0 0 0 0 0 0 0 0 6 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 45) THR46 0 0 0 0 0 0 0 0 0 5 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 65) TYR66 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 67) ARG68 0 0 0 0 0 0 9 13 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 69) ARG70 0 0 0 0 0 0 0 0 16 13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 72) VAL73 0 0 0 0 0 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 0 (138) LYS139 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 (139) THR140 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 21) SER222 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 23) ILE224 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 0 0 0 0 ( 25) GLN226 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 7 0 0 0 0 0 0 ( 27) LYS228 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 3 0 0 0 0 ( 29) ASN230 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 ( 31) SER232 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 2 ( 32) TYR233 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 10 21 0 ( 37) GLN238 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 7 0 0 ( 43) GLN244 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 6 1 0 0 0 0 0 0 0 ( 45) THR246 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 ( 65) TYR266 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 ( 67) ARG268 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 13 10 0 0 0 0 0 0 ( 69) ARG270 0 0 0 0 0 0 0 0 0 0 0 0 0 3 11 15 0 0 0 0 0 0 0 0 ( 72) VAL273 0 0 0 0 0 0 0 0 0 0 0 0 2 5 0 0 0 0 0 0 0 0 0 0 (138) LYS339 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 (139) THR340 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 prot.sequence ntkynkefllylagfvdgdgSiIaQiKpNqSYkfkhQlsltfQvTqktqrrwfldklvdeigvgYvRdRgsVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld/ntkynkefllylagfvdgdgSiIaQiKpNqSYkfkhQlSltfQvTqktqrrwfldklvdeigvgYvRdRgSVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld >1ga5_AB: title=CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA- BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENT organism=Homo sapiens DNA sequence DC(C600):DG(D640) DA(C601):5IU(D639) DA(C602):DT(D638) DC(C603):DG(D637) DT(C604):DA(D636) DA(C605):DT(D635) DG(C606):DC(D634) DG(C607):DC(D633) DT(C608):DA(D632) DC(C609):DG(D631) DA(C610):DT(D630) DC(C611):DG(D629) DT(C612):DA(D628) DA(C613):DT(D627) DG(C614):DC(D626) DG(C615):DC(D625) DT(C616):DA(D624) DC(C617):DG(D623) DA(C618):DT(D622) DG(C619):DC(D621) chainA ( 22) GLU19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 9 0 0 0 ( 25) LYS22 0 0 0 0 0 0 0 0 0 0 0 0 0 2 10 2 0 0 0 0 ( 29) ARG26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 6 0 0 0 0 ( 30) ARG27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 12 0 ( 77) PHE73 0 0 0 0 0 0 0 0 0 0 1 1 2 0 0 0 0 0 0 0 ( 79) ARG75 0 0 0 0 0 0 0 0 8 0 1 0 0 0 0 0 0 0 0 0 chainB ( 15) HIS12 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 22) GLU19 0 0 0 0 0 0 0 5 5 0 0 0 0 0 0 0 0 0 0 0 ( 25) LYS22 0 0 0 0 0 6 7 2 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) ARG26 0 0 0 0 0 0 6 9 2 0 0 0 0 0 0 0 0 0 0 0 ( 30) ARG27 0 0 0 0 0 0 0 0 0 7 11 0 0 0 0 0 0 0 0 0 ( 77) PHE73 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence vllckvcgdvasgfhygvlacEgcKgffRRsiqqniqykrclknencsivrinrnrcqqcrfkkclsvgmsrdavrFgRipk/vllckvcgdvasgfHygvlacEgcKgffRRsiqqniqykrclknencsivrinrnrcqqcrfkkclsvgmsrdavrFgr >1ga5_B:Glucocorticoid_receptor-like_DNA-binding_domain; title=CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA- BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENT organism=Homo sapiens DNA sequence DC(D621):DG(C619) DT(D622):DA(C618) DG(D623):DC(C617) DA(D624):DT(C616) DC(D625):DG(C615) DC(D626):DG(C614) DT(D627):DA(C613) DA(D628):DT(C612) DG(D629):DC(C611) DT(D630):DA(C610) DG(D631):DC(C609) DA(D632):DT(C608) DC(D633):DG(C607) DC(D634):DG(C606) DT(D635):DA(C605) DA(D636):DT(C604) DG(D637):DC(C603) DT(D638):DA(C602) 5IU(D639):DA(C601) DG(D640):DC(C600) chainB ( 15) HIS12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 ( 22) GLU19 0 0 0 0 0 0 0 0 0 0 0 5 5 0 0 0 0 0 0 0 ( 25) LYS22 0 0 0 0 0 0 0 0 0 0 0 0 2 7 6 0 0 0 0 0 ( 29) ARG26 0 0 0 0 0 0 0 0 0 0 0 2 9 6 0 0 0 0 0 0 ( 30) ARG27 0 0 0 0 0 0 0 0 0 11 7 0 0 0 0 0 0 0 0 0 ( 77) PHE73 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 prot.sequence vllckvcgdvasgfHygvlacEgcKgffRRsiqqniqykrclknencsivrinrnrcqqcrfkkclsvgmsrdavrFgr >1ga5_EF: title=CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA- BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENT organism=Homo sapiens DNA sequence DC(G600):DG(H640) DA(G601):5IU(H639) DA(G602):DT(H638) DC(G603):DG(H637) DT(G604):DA(H636) DA(G605):DT(H635) DG(G606):DC(H634) DG(G607):DC(H633) DT(G608):DA(H632) DC(G609):DG(H631) DA(G610):DT(H630) DC(G611):DG(H629) DT(G612):DA(H628) DA(G613):DT(H627) DG(G614):DC(H626) DG(G615):DC(H625) DT(G616):DA(H624) DC(G617):DG(H623) DA(G618):DT(H622) DG(G619):DC(H621) chainE ( 22) GLU19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 10 8 0 0 0 ( 25) LYS22 0 0 0 0 0 0 0 0 0 0 0 0 0 2 10 1 0 0 0 0 ( 29) ARG26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 6 0 0 0 0 ( 30) ARG27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 13 0 ( 77) PHE73 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 ( 79) ARG75 0 0 0 0 0 0 0 0 9 2 1 0 0 0 0 0 0 0 0 0 chainF ( 22) GLU19 0 0 0 0 0 0 0 9 7 0 0 0 0 0 0 0 0 0 0 0 ( 25) LYS22 0 0 0 0 0 5 9 2 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) ARG26 0 0 0 0 0 0 4 7 2 0 0 0 0 0 0 0 0 0 0 0 ( 30) ARG27 0 0 0 0 0 0 0 0 0 7 11 0 0 0 0 0 0 0 0 0 ( 77) PHE73 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence vllckvcgdvasgfhygvlacEgcKgffRRsiqqniqykrclknencsivrinrnrcqqcrfkkclsvgmsrdavrFgRip/vllckvcgdvasgfhygvlacEgcKgffRRsiqqniqykrclknencsivrinrnrcqqcrfkkclsvgmsrdavrFg >1gau_A:Glucocorticoid_receptor-like_DNA-binding_domain; title=SOLUTION STRUCTURE OF THE SPECIFIC DNA COMPLEX OF THE ZINC CONTAINING DNA BINDING DOMAIN OF THE ERYTHROID TRANSCRIPTION FACTOR GATA-1 BY MULTIDIMENSIONAL NMR organism=? DNA sequence DG(C120):DC(B113) DT(C121):DA(B112) DT(C122):DA(B111) DT(C123):DA(B110) DA(C124):DT(B109) DT(C125):DA(B108) DC(C126):DG(B107) DT(C127):DA(B106) chainA ( 16) THR16 0 0 0 0 4 4 0 0 ( 17) LEU17 0 0 0 0 0 9 13 6 ( 29) ASN29 0 0 0 0 2 1 0 0 ( 33) LEU33 0 0 0 8 3 0 0 0 ( 37) LEU37 0 0 3 2 0 0 0 0 ( 57) LYS57 0 0 0 0 2 0 0 0 prot.sequence kragtvcsncqtsttTLwrrspmgdpvcNacgLyykLhqvnrpltmrkdgiqtrnrKvss >1gji_AB: title=CRYSTAL STRUCTURE OF C-REL BOUND TO DNA organism=Gallus gallus DNA sequence DG(C1):DC(D320) DG(C2):DC(D319) DG(C3):DC(D318) DT(C4):DA(D317) DT(C5):DA(D316) DT(C6):DA(D315) DA(C7):DT(D314) DA(C8):DT(D313) DA(C9):DT(D312) DG(C10):DC(D311) DA(C11):DT(D310) DA(C12):DT(D309) DA(C13):DT(D308) DT(C14):DA(D307) DT(C15):DA(D306) DC(C16):DG(D305) DC(C17):DG(D304) DA(C18):DT(D303) DG(C19):DC(D302) DA(C20):DT(D301) chainA ( 15) ARG21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 23 0 0 0 ( 17) ARG23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 4 0 0 ( 18) TYR24 0 0 0 0 0 0 0 0 0 0 0 0 0 2 5 0 0 0 0 0 ( 20) CYS26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 ( 21) GLU27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 3 2 0 0 0 (172) ARG178 0 0 0 0 0 0 0 0 0 0 0 0 0 2 10 0 0 0 0 0 chainB ( 15) ARG21 0 0 0 0 0 0 0 0 5 12 1 0 0 0 0 0 0 0 0 0 ( 17) ARG23 0 0 0 0 0 0 0 2 3 2 0 0 0 0 0 0 0 0 0 0 ( 18) TYR24 0 0 0 0 0 0 0 0 0 0 3 9 0 0 0 0 0 0 0 0 ( 20) CYS26 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 ( 21) GLU27 0 0 0 0 0 0 0 0 0 9 4 0 0 0 0 0 0 0 0 0 (172) ARG178 0 0 0 0 0 0 0 0 0 2 6 2 0 0 0 0 0 0 0 0 (203) LYS209 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 prot.sequence pyieifeqprqrgmRfRYkCEgrsagsipgehstdnnktfpsiqilnyfgkvkirttlvtknepykphphdlvgkdcrdgyyeaefgperrvlsfqnlgiqcvkkkdlkesislriskkinpfnvpeeqlhnideydlnvvrlcfqaflpdehgnytlalpplisnpiydnRapntaelricrvnkncgsvkggdeifilcdkvqkddievrfvldnweakgsfsqadvhrqvaivfrtppflrditepitvkmqlrrpsdqevsepmdfrylpd/pyieifeqprqrgmRfRYkCEgrsagsipgehstdnnktfpsiqilnyfgkvkirttlvtknepykphphdlvgkdcrdgyyeaefgperrvlsfqnlgiqcvkkkdlkesislriskkinpfnvpeeqlhnideydlnvvrlcfqaflpdehgnytlalpplisnpiydnRapntaelricrvnkncgsvkggdeifilcdKvqkddievrfvldnweakgsfsqadvhrqvaivfrtppflrditepitvkmqlrrpsdqevsepmdfrylpd >1glu_A:Glucocorticoid_receptor-like_DNA-binding_domain; title=CRYSTALLOGRAPHIC ANALYSIS OF THE INTERACTION OF THE GLUCOCORTICOID RECEPTOR WITH DNA organism=Rattus norvegicus DNA sequence DC(D-9):DG(C9) DA(D-8):DT(C8) DG(D-7):DC(C7) DA(D-6):DT(C6) DA(D-5):DT(C5) DC(D-4):DG(C4) DA(D-3):DT(C3) DT(D-2):DA(C2) DC(D-1):DG(C1) DG(D1):DC(C-1) DA(D2):DT(C-2) DT(D3):DA(C-3) DG(D4):DC(C-4) DT(D5):DA(C-5) DT(D6):DA(C-6) DC(D7):DG(C-7) DT(D8):DA(C-8) DG(D9):DC(C-9) chainA ( 28) LYS461 0 4 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) VAL462 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 33) ARG466 0 0 0 0 0 11 15 0 0 0 0 0 0 0 0 0 0 0 ( 78) LYS511 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence mkparpclvcsdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacryrkclqagmnlearKtkk >1glu_AB:Glucocorticoid_receptor-like_DNA-binding_domain; title=CRYSTALLOGRAPHIC ANALYSIS OF THE INTERACTION OF THE GLUCOCORTICOID RECEPTOR WITH DNA organism=Rattus norvegicus DNA sequence DC(D-9):DG(C9) DA(D-8):DT(C8) DG(D-7):DC(C7) DA(D-6):DT(C6) DA(D-5):DT(C5) DC(D-4):DG(C4) DA(D-3):DT(C3) DT(D-2):DA(C2) DC(D-1):DG(C1) DG(D1):DC(C-1) DA(D2):DT(C-2) DT(D3):DA(C-3) DG(D4):DC(C-4) DT(D5):DA(C-5) DT(D6):DA(C-6) DC(D7):DG(C-7) DT(D8):DA(C-8) DG(D9):DC(C-9) chainA ( 28) LYS461 0 4 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) VAL462 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 33) ARG466 0 0 0 0 0 11 15 0 0 0 0 0 0 0 0 0 0 0 ( 78) LYS511 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 28) LYS461 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 ( 33) ARG466 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 prot.sequence mkparpclvcsdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacryrkclqagmnlearKtkk/mkparpclvcsdeasgchygvltcgscKvffkRavegqhnylcagrndciidkirrkncpacryrkclqagmnlearktkk >1gt0_C:lambda_repressor-like_DNA-binding_domains;Homeodomain-like; title=CRYSTAL STRUCTURE OF A POU/HMG/DNA TERNARY COMPLEX organism=HOMO SAPIENS DNA sequence DT(A2):DA(B48) DC(A3):DG(B47) DT(A4):DA(B46) DT(A5):DA(B45) DT(A6):DA(B44) DG(A7):DC(B43) DT(A8):DA(B42) DT(A9):DA(B41) DT(A10):DA(B40) DG(A11):DC(B39) DG(A12):DC(B38) DA(A13):DT(B37) DT(A14):DA(B36) DG(A15):DC(B35) DC(A16):DG(B34) DT(A17):DA(B33) DA(A18):DT(B32) DA(A19):DT(B31) DT(A20):DA(B30) DG(A21):DC(B29) DG(A22):DC(B28) DG(A23):DC(B27) DA(A24):DT(B26) chainC ( 41) SER43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 42) GLN44 0 0 0 0 0 0 0 0 0 0 9 10 1 0 0 0 0 0 0 0 0 0 0 ( 43) THR45 0 0 0 0 0 0 0 0 0 0 0 0 10 6 5 0 0 0 0 0 0 0 0 ( 46) SER48 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 ( 47) ARG49 0 0 0 0 0 0 0 0 0 0 0 0 7 9 7 0 0 0 0 0 0 0 0 ( 84) ARG105 0 0 0 0 0 0 0 0 0 0 0 0 0 1 15 8 5 0 0 0 0 0 0 (126) VAL147 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 (129) SER150 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 (130) ASN151 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 12 0 0 0 0 0 (133) GLN154 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 prot.sequence psdleeleqfaktfkqrriklgftqgdvglamgklygndfSQTtiSRfealnlsfknmsklkpllekwlndaenlglsrrrkkRtsietnirvaleksflenqkptseeitmiadqlnmekevirVwfSNrrQkekr >1gt0_CD: title=CRYSTAL STRUCTURE OF A POU/HMG/DNA TERNARY COMPLEX organism=HOMO SAPIENS / MUS MUSCULUS DNA sequence DT(A2):DA(B48) DC(A3):DG(B47) DT(A4):DA(B46) DT(A5):DA(B45) DT(A6):DA(B44) DG(A7):DC(B43) DT(A8):DA(B42) DT(A9):DA(B41) DT(A10):DA(B40) DG(A11):DC(B39) DG(A12):DC(B38) DA(A13):DT(B37) DT(A14):DA(B36) DG(A15):DC(B35) DC(A16):DG(B34) DT(A17):DA(B33) DA(A18):DT(B32) DA(A19):DT(B31) DT(A20):DA(B30) DG(A21):DC(B29) DG(A22):DC(B28) DG(A23):DC(B27) DA(A24):DT(B26) chainC ( 41) SER43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 42) GLN44 0 0 0 0 0 0 0 0 0 0 9 10 1 0 0 0 0 0 0 0 0 0 0 ( 43) THR45 0 0 0 0 0 0 0 0 0 0 0 0 10 6 5 0 0 0 0 0 0 0 0 ( 46) SER48 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 ( 47) ARG49 0 0 0 0 0 0 0 0 0 0 0 0 7 9 7 0 0 0 0 0 0 0 0 ( 84) ARG105 0 0 0 0 0 0 0 0 0 0 0 0 0 1 15 8 5 0 0 0 0 0 0 (126) VAL147 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 (129) SER150 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 (130) ASN151 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 12 0 0 0 0 0 (133) GLN154 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 chainD ( 5) ARG5 0 0 0 0 0 8 8 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 8) ASN8 0 0 0 0 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 10) PHE10 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 11) MET11 0 0 0 13 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 18) ARG18 0 0 6 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 30) ASN30 0 13 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 31) SER31 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 34) SER34 0 0 8 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 72) TYR72 0 0 0 0 0 0 7 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 76) ARG76 0 0 0 0 0 0 0 0 1 7 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence psdleeleqfaktfkqrriklgftqgdvglamgklygndfSQTtiSRfealnlsfknmsklkpllekwlndaenlglsrrrkkRtsietnirvaleksflenqkptseeitmiadqlnmekevirVwfSNrrQkekr/drvkRpmNaFMvwsrgqRrkmaqenpkmhNSeiSkrlgaewkllsetekrpfideakrlralhmkehpdykYrprRktk >1gtw_A:Leucine_zipper_domain; title=CRYSTAL STRUCTURE OF C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE TOM-1A PROMOTER organism=HOMO SAPIENS DNA sequence DA(D102):DT(C16) DG(D103):DC(C15) DG(D104):DC(C14) DA(D105):DT(C13) DT(D106):DA(C12) DT(D107):DA(C11) DG(D108):DC(C10) DC(D109):DG(C9) DG(D110):DC(C8) DC(D111):DG(C7) DC(D112):DG(C6) DA(D113):DT(C5) DC(D114):DG(C4) DA(D115):DT(C3) DT(D116):DA(C2) chainA ( 11) ARG278 0 0 0 0 0 6 4 0 0 0 0 0 0 0 0 ( 14) ASN281 0 0 0 3 6 7 1 0 0 0 0 0 0 0 0 ( 17) ALA284 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 ( 18) VAL285 0 0 0 0 2 6 2 0 0 0 0 0 0 0 0 ( 21) SER288 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 ( 22) ARG289 0 0 0 0 0 2 6 14 16 0 0 0 0 0 0 prot.sequence dkhsdeykirRerNniAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfk >1gtw_AB: title=CRYSTAL STRUCTURE OF C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE TOM-1A PROMOTER organism=HOMO SAPIENS DNA sequence DA(D102):DT(C16) DG(D103):DC(C15) DG(D104):DC(C14) DA(D105):DT(C13) DT(D106):DA(C12) DT(D107):DA(C11) DG(D108):DC(C10) DC(D109):DG(C9) DG(D110):DC(C8) DC(D111):DG(C7) DC(D112):DG(C6) DA(D113):DT(C5) DC(D114):DG(C4) DA(D115):DT(C3) DT(D116):DA(C2) chainA ( 11) ARG278 0 0 0 0 0 6 4 0 0 0 0 0 0 0 0 ( 14) ASN281 0 0 0 3 6 7 1 0 0 0 0 0 0 0 0 ( 17) ALA284 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 ( 18) VAL285 0 0 0 0 2 6 2 0 0 0 0 0 0 0 0 ( 21) SER288 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 ( 22) ARG289 0 0 0 0 0 2 6 14 16 0 0 0 0 0 0 chainB ( 11) ARG278 0 0 0 0 0 0 0 0 0 7 8 0 0 0 0 ( 14) ASN281 0 0 0 0 0 0 0 0 0 0 7 8 3 0 0 ( 15) ASN282 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 ( 17) ALA284 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 ( 18) VAL285 0 0 0 0 0 0 0 0 0 1 2 3 0 0 0 ( 21) SER288 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 ( 22) ARG289 0 0 0 0 0 0 0 1 12 7 2 0 0 0 0 prot.sequence dkhsdeykirRerNniAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfk/dkhsdeykirRerNNiAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkql >1gu4_A:Leucine_zipper_domain; title=CRYSTAL STRUCTURE OF C/EBPBETA BZIP HOMODIMER BOUND TO A HIGH AFFINITY DNA FRAGMENT organism=HOMO SAPIENS DNA sequence DA(D102):DT(C16) DT(D103):DA(C15) DA(D104):DT(C14) DT(D105):DA(C13) DT(D106):DA(C12) DG(D107):DC(C11) DC(D108):DG(C10) DG(D109):DC(C9) DC(D110):DG(C8) DA(D111):DT(C7) DA(D112):DT(C6) DT(D113):DA(C5) DC(D114):DG(C4) DC(D115):DG(C3) DT(D116):DA(C2) chainA ( 11) ARG278 0 0 0 0 6 4 0 0 0 0 0 0 0 0 0 ( 14) ASN281 0 0 1 5 7 1 0 0 0 0 0 0 0 0 0 ( 17) ALA284 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 ( 18) VAL285 0 0 0 2 6 2 0 0 0 0 0 0 0 0 0 ( 21) SER288 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 ( 22) ARG289 0 0 0 0 2 6 13 15 0 0 0 0 0 0 0 prot.sequence dkhsdeykirRerNniAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfk >1gu4_AB: title=CRYSTAL STRUCTURE OF C/EBPBETA BZIP HOMODIMER BOUND TO A HIGH AFFINITY DNA FRAGMENT organism=HOMO SAPIENS DNA sequence DA(C2):DT(D116) DG(C3):DC(D115) DG(C4):DC(D114) DA(C5):DT(D113) DT(C6):DA(D112) DT(C7):DA(D111) DG(C8):DC(D110) DC(C9):DG(D109) DG(C10):DC(D108) DC(C11):DG(D107) DA(C12):DT(D106) DA(C13):DT(D105) DT(C14):DA(D104) DA(C15):DT(D103) DT(C16):DA(D102) chainA ( 11) ARG278 0 0 0 0 0 0 0 0 0 4 6 0 0 0 0 ( 14) ASN281 0 0 0 0 0 0 0 0 0 1 7 5 1 0 0 ( 17) ALA284 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 ( 18) VAL285 0 0 0 0 0 0 0 0 0 2 6 2 0 0 0 ( 21) SER288 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 ( 22) ARG289 0 0 0 0 0 0 0 15 13 6 2 0 0 0 0 chainB ( 11) ARG278 0 0 0 0 0 7 7 0 0 0 0 0 0 0 0 ( 14) ASN281 0 0 0 3 7 7 0 0 0 0 0 0 0 0 0 ( 15) ASN282 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 ( 17) ALA284 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 ( 18) VAL285 0 0 0 0 2 4 2 0 0 0 0 0 0 0 0 ( 21) SER288 0 0 0 0 4 2 0 0 0 0 0 0 0 0 0 ( 22) ARG289 0 0 0 0 0 15 9 4 0 0 0 0 0 0 0 prot.sequence dkhsdeykirRerNniAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfk/dkhsdeykirRerNNiAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkql >1gu5_A:Leucine_zipper_domain; title=CRYSTAL STRUCTURE OF C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE MIM-1 PROMOTER organism=HOMO SAPIENS DNA sequence DT(D102):DA(C16) DG(D103):DC(C15) DA(D104):DT(C14) DT(D105):DA(C13) DT(D106):DA(C12) DG(D107):DC(C11) DG(D108):DC(C10) DC(D109):DG(C9) DC(D110):DG(C8) DA(D111):DT(C7) DA(D112):DT(C6) DC(D113):DG(C5) DA(D114):DT(C4) DC(D115):DG(C3) DA(D116):DT(C2) chainA ( 11) ARG278 0 0 0 0 5 8 0 0 0 0 0 0 0 0 0 ( 14) ASN281 0 0 1 7 7 1 0 0 0 0 0 0 0 0 0 ( 15) ASN282 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 ( 17) ALA284 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 ( 18) VAL285 0 0 0 3 5 3 0 0 0 0 0 0 0 0 0 ( 21) SER288 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 ( 22) ARG289 0 0 0 0 14 12 2 0 0 0 0 0 0 0 0 prot.sequence dkhsdeykirRerNNiAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfk >1gu5_AB: title=CRYSTAL STRUCTURE OF C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE MIM-1 PROMOTER organism=HOMO SAPIENS DNA sequence DT(D102):DA(C16) DG(D103):DC(C15) DA(D104):DT(C14) DT(D105):DA(C13) DT(D106):DA(C12) DG(D107):DC(C11) DG(D108):DC(C10) DC(D109):DG(C9) DC(D110):DG(C8) DA(D111):DT(C7) DA(D112):DT(C6) DC(D113):DG(C5) DA(D114):DT(C4) DC(D115):DG(C3) DA(D116):DT(C2) chainA ( 11) ARG278 0 0 0 0 5 8 0 0 0 0 0 0 0 0 0 ( 14) ASN281 0 0 1 7 7 1 0 0 0 0 0 0 0 0 0 ( 15) ASN282 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 ( 17) ALA284 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 ( 18) VAL285 0 0 0 3 5 3 0 0 0 0 0 0 0 0 0 ( 21) SER288 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 ( 22) ARG289 0 0 0 0 14 12 2 0 0 0 0 0 0 0 0 chainB ( 11) ARG278 0 0 0 0 0 0 0 0 7 6 0 0 0 0 0 ( 14) ASN281 0 0 0 0 0 0 0 0 0 7 8 3 0 0 0 ( 15) ASN282 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 ( 17) ALA284 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 ( 18) VAL285 0 0 0 0 0 0 0 0 3 5 3 0 0 0 0 ( 21) SER288 0 0 0 0 0 0 0 0 0 1 4 0 0 0 0 ( 22) ARG289 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 prot.sequence dkhsdeykirRerNNiAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfk/dkhsdeykirRerNNiAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkql >1gxp_A:C-terminal_effector_domain_of_the_bipartite_response_regulators; title=PHOB EFFECTOR DOMAIN IN COMPLEX WITH PHO BOX DNA. organism=ESCHERICHIA COLI DNA sequence DC(D2):DG(C23) DC(D3):DG(C22) DG(D4):DC(C21) DT(D5):DA(C20) DG(D6):DC(C19) DA(D7):DT(C18) DC(D8):DG(C17) DA(D9):DT(C16) DA(D10):DT(C15) DC(D11):DG(C14) DT(D12):DA(C13) DT(D13):DA(C12) DT(D14):DA(C11) DA(D15):DT(C10) DT(D16):DA(C9) DG(D17):DC(C8) DA(D18):DT(C7) DC(D19):DG(C6) DA(D20):DT(C5) DG(D21):DC(C4) DC(D22):DG(C3) DT(D23):DA(C2) chainA ( 67) ARG193 0 0 0 0 0 0 0 0 0 0 0 0 9 0 0 0 0 0 0 0 0 0 ( 68) THR194 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 ( 70) ASP196 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 71) VAL197 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 8 0 0 0 0 0 ( 74) ARG200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 ( 75) ARG201 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 9 8 0 0 0 ( 93) ARG219 0 0 0 0 0 0 0 0 0 8 8 4 0 0 0 0 0 0 0 0 0 0 prot.sequence aveeviemqglsldptshrvmageeplemgptefkllhffmthpervysreqllnhvwgtnvyvedRTvDVhiRRlrkalepgghdrmvqtvRgtgyrfstrf >1gxp_AB: title=PHOB EFFECTOR DOMAIN IN COMPLEX WITH PHO BOX DNA. organism=ESCHERICHIA COLI DNA sequence DA(C2):DT(D23) DG(C3):DC(D22) DC(C4):DG(D21) DT(C5):DA(D20) DG(C6):DC(D19) DT(C7):DA(D18) DC(C8):DG(D17) DA(C9):DT(D16) DT(C10):DA(D15) DA(C11):DT(D14) DA(C12):DT(D13) DA(C13):DT(D12) DG(C14):DC(D11) DT(C15):DA(D10) DT(C16):DA(D9) DG(C17):DC(D8) DT(C18):DA(D7) DC(C19):DG(D6) DA(C20):DT(D5) DC(C21):DG(D4) DG(C22):DC(D3) DG(C23):DC(D2) chainA ( 67) ARG193 0 0 0 0 0 0 0 0 0 9 0 0 0 0 0 0 0 0 0 0 0 0 ( 68) THR194 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 70) ASP196 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 71) VAL197 0 0 0 0 0 8 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 74) ARG200 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 75) ARG201 0 0 0 8 9 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 93) ARG219 0 0 0 0 0 0 0 0 0 0 4 8 8 0 0 0 0 0 0 0 0 0 chainB ( 65) ARG193 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 ( 66) THR194 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 ( 69) VAL197 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 2 1 0 0 0 ( 72) ARG200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 2 0 0 0 ( 73) ARG201 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 8 2 0 0 0 0 0 ( 91) ARG219 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 prot.sequence aveeviemqglsldptshrvmageeplemgptefkllhffmthpervysreqllnhvwgtnvyvedRTvDVhiRRlrkalepgghdrmvqtvRgtgyrfstrf/eeviemqglsldptshrvmageeplemgptefkllhffmthpervysreqllnhvwgtnvyvedRTvdVhiRRlrkalepgghdrmvqtvRgtgyrfstrf >1gxp_EF: title=PHOB EFFECTOR DOMAIN IN COMPLEX WITH PHO BOX DNA. organism=ESCHERICHIA COLI DNA sequence DA(G2):DT(H23) DG(G3):DC(H22) DC(G4):DG(H21) DT(G5):DA(H20) DG(G6):DC(H19) DT(G7):DA(H18) DC(G8):DG(H17) DA(G9):DT(H16) DT(G10):DA(H15) DA(G11):DT(H14) DA(G12):DT(H13) DA(G13):DT(H12) DG(G14):DC(H11) DT(G15):DA(H10) DT(G16):DA(H9) DG(G17):DC(H8) DT(G18):DA(H7) DC(G19):DG(H6) DA(G20):DT(H5) DC(G21):DG(H4) DG(G22):DC(H3) DG(G23):DC(H2) chainE ( 66) ARG193 0 0 0 0 0 0 0 0 0 9 0 0 0 0 0 0 0 0 0 0 0 0 ( 67) THR194 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 70) VAL197 0 0 0 0 0 6 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 73) ARG200 0 0 0 0 0 0 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 74) ARG201 0 0 0 5 9 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 92) ARG219 0 0 0 0 0 0 0 0 0 0 5 5 3 0 0 0 0 0 0 0 0 0 chainF ( 66) ARG193 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 ( 67) THR194 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 ( 70) VAL197 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 2 0 0 0 0 ( 73) ARG200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 1 0 0 0 ( 74) ARG201 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 7 1 0 0 0 0 0 ( 92) ARG219 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 prot.sequence veeviemqglsldptshrvmageeplemgptefkllhffmthpervysreqllnhvwgtnvyvedRTvdVhiRRlrkalepgghdrmvqtvRgtgyrfstrf/veeviemqglsldptshrvmageeplemgptefkllhffmthpervysreqllnhvwgtnvyvedRTvdVhiRRlrkalepgghdrmvqtvRgtgyrfstrf >1h0m_AB: title=THREE-DIMENSIONAL STRUCTURE OF THE QUORUM SENSING PROTEIN TRAR BOUND TO ITS AUTOINDUCER AND TO ITS TARGET DNA organism=Rhizobium radiobacter DNA sequence DA(F1):DT(E18) DT(F2):DA(E17) DG(F3):DC(E16) DT(F4):DA(E15) DG(F5):DC(E14) DC(F6):DG(E13) DA(F7):DT(E12) DG(F8):DC(E11) DA(F9):DT(E10) DT(F10):DA(E9) DC(F11):DG(E8) DT(F12):DA(E7) DG(F13):DC(E6) DC(F14):DG(E5) DA(F15):DT(E4) DC(F16):DG(E3) DA(F17):DT(E2) DT(F18):DA(E1) chainA (198) TYR202 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 (199) ASN203 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (202) ARG206 0 0 0 12 12 5 2 0 0 0 0 0 0 0 0 0 0 0 (203) VAL207 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (206) ARG210 0 0 2 6 4 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB (198) TYR202 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 (199) ASN203 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 (202) ARG206 0 0 0 0 0 0 0 0 0 0 0 1 6 11 3 0 0 0 (203) VAL207 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4 0 0 (206) ARG210 0 0 0 0 0 0 0 0 0 0 0 0 0 3 7 4 0 0 (207) GLU211 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 prot.sequence mqhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqstyfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipiktangfmsmftmasdkpvidldreidavaaaatigqiharisflrttdaawldpkeatylrwiavgktmeeiadvegvkYNsvRVklReamkrfdvrskahltalairrkli/mqhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqstyfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipiktangfmsmftmasdkpvididavaaaatigqiharisflrttptaedaawldpkeatylrwiavgktmeeiadvegvkYNsvRVklREamkrfdvrskahltalairrkli >1h0m_C:Pheromone-binding_domain_of_LuxR-like_quorum-sensing_transcription_factors;C-terminal_effector_domain_of_the_bipartite_response_regulators; title=THREE-DIMENSIONAL STRUCTURE OF THE QUORUM SENSING PROTEIN TRAR BOUND TO ITS AUTOINDUCER AND TO ITS TARGET DNA organism=Rhizobium radiobacter DNA sequence DA(H1):DT(G18) DT(H2):DA(G17) DG(H3):DC(G16) DT(H4):DA(G15) DG(H5):DC(G14) DC(H6):DG(G13) DA(H7):DT(G12) DG(H8):DC(G11) DA(H9):DT(G10) DT(H10):DA(G9) DC(H11):DG(G8) DT(H12):DA(G7) DG(H13):DC(G6) DC(H14):DG(G5) DA(H15):DT(G4) DC(H16):DG(G3) DA(H17):DT(G2) DT(H18):DA(G1) chainC (196) TYR202 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 (197) ASN203 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (200) ARG206 0 0 0 9 14 6 0 0 0 0 0 0 0 0 0 0 0 0 (201) VAL207 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (204) ARG210 0 0 2 6 3 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence mqhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqstyfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipiktangfmsmftmasdkpvidldreidavaaaatigqiharisflrtaawldpkeatylrwiavgktmeeiadvegvkYNsvRVklReamkrfdvrskahltalairrkli >1h0m_CD: title=THREE-DIMENSIONAL STRUCTURE OF THE QUORUM SENSING PROTEIN TRAR BOUND TO ITS AUTOINDUCER AND TO ITS TARGET DNA organism=Rhizobium radiobacter DNA sequence DA(G1):DT(H18) DT(G2):DA(H17) DG(G3):DC(H16) DT(G4):DA(H15) DG(G5):DC(H14) DC(G6):DG(H13) DA(G7):DT(H12) DG(G8):DC(H11) DA(G9):DT(H10) DT(G10):DA(H9) DC(G11):DG(H8) DT(G12):DA(H7) DG(G13):DC(H6) DC(G14):DG(H5) DA(G15):DT(H4) DC(G16):DG(H3) DA(G17):DT(H2) DT(G18):DA(H1) chainC (196) TYR202 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 (197) ASN203 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 (200) ARG206 0 0 0 0 0 0 0 0 0 0 0 0 6 14 9 0 0 0 (201) VAL207 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 (204) ARG210 0 0 0 0 0 0 0 0 0 0 0 0 0 3 6 2 0 0 chainD (197) TYR202 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 (198) ASN203 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (201) ARG206 0 0 0 3 11 8 2 0 0 0 0 0 0 0 0 0 0 0 (202) VAL207 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (205) ARG210 0 0 2 7 3 0 0 0 0 0 0 0 0 0 0 0 0 0 (206) GLU211 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence mqhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqstyfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipiktangfmsmftmasdkpvidldreidavaaaatigqiharisflrtaawldpkeatylrwiavgktmeeiadvegvkYNsvRVklReamkrfdvrskahltalairrkli/qhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqstyfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipiktangfmsmftmasdkpvididavaaaatigqiharisflrttptaedaawldpkeatylrwiavgktmeeiadvegvkYNsvRVklREamkrfdvrskahltalairrkli >1h38_C:DNA/RNA_polymerases; title=STRUCTURE OF A T7 RNA POLYMERASE ELONGATION COMPLEX AT 2.9A RESOLUTION organism=BACTERIOPHAGE T7 DNA sequence DT(M2):DA(K9) DC(M3):DG(K8) DG(M4):DC(K7) DA(M5):DT(K6) DT(M6):DA(K5) DT(M7):DA(K4) DC(M8):DG(K3) DC(M9):DG(K2) chainC (627) PHE644 45 0 0 0 0 0 0 0 prot.sequence ntiniakndfsdielaaipfntladhygerlareqlalehesyemgearfrkmferqlkagevadnaaakplittllpkmiarindwfeevkakrgkrptafqflqeikpeavayitikttlacltsadnttvqavasaigraiedearfgrirdleakhfkknveeqlnkrvghvykkafmqvveadmlskgllggeawsswhkedsihvgvrciemliestgmvslhrqnagvvgqdsetielapeyaeaiatragalagispmfqpcvvppkpwtgitgggywangrrplalvrthskkalmryedvympevykainiaqntawkinkkvlavanvitkwkhcpvedipaiealtawkraaaavyrkdkarksrrislefmleqankfanhkaiwfpynmdwrgrvyavsmfnpqgndmtkglltlakgkpigkegyywlkihgancagvdkvpfperikfieenhenimacaksplentwwaeqdspfcflafcfeyagvqhhglsyncslplafdgscsgiqhfsamlrdevggravnllpsetvqdiygivakkvneilqadaingtdnevvtvtdentgeisekvklgtkalagqwlaygvtrsvtkrsvmtlaygskeFgfrqqvledtiqpaidsgkglmftqpnqaagymakliwesvsvtvvaaveamnwlksaakllaaevkdkktgeilrkrcavhwvtpdgfpvwqeykkpiqtrlnlmflgqfrdseidahkqesgiapnfvhsqdgshlrktvvwahekygiesfalihdsfgtipadaanlfkavretmvdtyescdvladfydqfadqlhesqldkmpalpakgnlnlrdilesdfafa >1h6f_AB: title=HUMAN TBX3, A TRANSCRIPTION FACTOR RESPONSIBLE FOR ULNAR-MAMMARY SYNDROME, BOUND TO A PALINDROMIC DNA SITE organism=HOMO SAPIENS DNA sequence DA(D3):DT(C24) DT(D4):DA(C23) DT(D5):DA(C22) DT(D6):DA(C21) DC(D7):DG(C20) DA(D8):DT(C19) DC(D9):DG(C18) DA(D10):DT(C17) DC(D11):DG(C16) DC(D12):DG(C15) DT(D13):DA(C14) DA(D14):DT(C13) DG(D15):DC(C12) DG(D16):DC(C11) DT(D17):DA(C10) DG(D18):DC(C9) DT(D19):DA(C8) DG(D20):DC(C7) DA(D21):DT(C6) DA(D22):DT(C5) DA(D23):DT(C4) DT(D24):DA(C3) chainA ( 29) ARG130 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 5 0 0 0 0 0 0 (161) THR262 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 5 0 0 (162) ALA263 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 (178) PHE279 0 0 0 0 0 0 0 0 0 0 0 3 4 3 0 0 0 0 0 0 0 0 (182) PHE283 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 9 0 0 0 0 0 0 chainB ( 31) ARG130 0 0 0 0 0 0 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (163) THR262 0 0 5 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (164) ALA263 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (180) PHE279 0 0 0 0 0 0 0 0 4 3 3 0 0 0 0 0 0 0 0 0 0 0 (184) PHE283 0 0 0 0 0 0 10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence dpkvhleakelwdqfhkrgtemvitksgRrmfppfkvrcsgldkkakyillmdiiaaddcrykfhnsrwmvagkadpempkrmyihpdspatgeqwmskvvtfhklkltnnisdkhgftilnsmhkyqprfhivrandilklpystfrtylfpetefiavTAyqndkitqlkidnnpFakgFrd/kddpkvhleakelwdqfhkrgtemvitksgRrmfppfkvrcsgldkkakyillmdiiaaddcrykfhnsrwmvagkadpempkrmyihpdspatgeqwmskvvtfhklkltnnisdkhgftilnsmhkyqprfhivrandilklpystfrtylfpetefiavTAyqndkitqlkidnnpFakgFrd >1h88_ABC: title=CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX1 organism=HOMO SAPIENS / MUS MUSCULUS DNA sequence DA(D2):DT(E26) DT(D3):DA(E25) DG(D4):DC(E24) DT(D5):DA(E23) DG(D6):DC(E22) DG(D7):DC(E21) DC(D8):DG(E20) DG(D9):DC(E19) DC(D10):DG(E18) DA(D11):DT(E17) DA(D12):DT(E16) DT(D13):DA(E15) DC(D14):DG(E14) DC(D15):DG(E13) DT(D16):DA(E12) DT(D17):DA(E11) DA(D18):DT(E10) DA(D19):DT(E9) DC(D20):DG(E8) DG(D21):DC(E7) DG(D22):DC(E6) DA(D23):DT(E5) DC(D24):DG(E4) DT(D25):DA(E3) DG(D26):DC(E2) chainA ( 12) ARG278 0 0 0 0 0 0 0 0 5 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 15) ASN281 0 0 0 0 0 0 0 0 0 9 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 18) ALA284 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 19) VAL285 0 0 0 0 0 0 0 0 1 4 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 22) SER288 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 23) ARG289 0 0 0 0 0 0 9 13 6 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 13) ARG278 0 0 0 0 8 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 16) ASN281 0 0 3 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 17) ASN282 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 19) ALA284 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 20) VAL285 0 0 0 2 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 23) SER288 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 24) ARG289 0 0 0 0 4 6 10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainC ( 90) LYS128 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 7 8 0 0 0 ( 93) ARG131 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 ( 94) GLU132 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 9 1 0 0 0 0 0 (140) ASP178 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 (141) ASN179 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 10 0 0 0 0 0 0 0 (144) LYS182 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 10 0 0 0 0 0 0 (145) ASN183 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 10 2 0 0 0 0 0 0 0 (148) ASN186 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 (149) SER187 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 prot.sequence vdkhsdeykirRerNniAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkqlpe/tvdkhsdeykirRerNNiAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkqlpe/gktrwtreedeklkklveqngtddwkvianylpnrtdvqcqhrwqkvlnpelikgpwtkeedqrviklvqkygpkrwsviakhlkgrigKqcRErwhnhlnpevkktswteeedriiyqahkrlgnrwaeiakllpgrtDNaiKNhwNStmr >1h88_C:Homeodomain-like; title=CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX1 organism=MUS MUSCULUS DNA sequence DA(D2):DT(E26) DT(D3):DA(E25) DG(D4):DC(E24) DT(D5):DA(E23) DG(D6):DC(E22) DG(D7):DC(E21) DC(D8):DG(E20) DG(D9):DC(E19) DC(D10):DG(E18) DA(D11):DT(E17) DA(D12):DT(E16) DT(D13):DA(E15) DC(D14):DG(E14) DC(D15):DG(E13) DT(D16):DA(E12) DT(D17):DA(E11) DA(D18):DT(E10) DA(D19):DT(E9) DC(D20):DG(E8) DG(D21):DC(E7) DG(D22):DC(E6) DA(D23):DT(E5) DC(D24):DG(E4) DT(D25):DA(E3) DG(D26):DC(E2) chainC ( 90) LYS128 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 7 8 0 0 0 ( 93) ARG131 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 ( 94) GLU132 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 9 1 0 0 0 0 0 (140) ASP178 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 (141) ASN179 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 10 0 0 0 0 0 0 0 (144) LYS182 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 10 0 0 0 0 0 0 (145) ASN183 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 10 2 0 0 0 0 0 0 0 (148) ASN186 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 (149) SER187 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 prot.sequence gktrwtreedeklkklveqngtddwkvianylpnrtdvqcqhrwqkvlnpelikgpwtkeedqrviklvqkygpkrwsviakhlkgrigKqcRErwhnhlnpevkktswteeedriiyqahkrlgnrwaeiakllpgrtDNaiKNhwNStmr >1h89_A:Leucine_zipper_domain; title=CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX2 organism=HOMO SAPIENS DNA sequence DC(E2):DG(D26) DA(E3):DT(D25) DG(E4):DC(D24) DT(E5):DA(D23) DC(E6):DG(D22) DC(E7):DG(D21) DG(E8):DC(D20) DT(E9):DA(D19) DT(E10):DA(D18) DA(E11):DT(D17) DA(E12):DT(D16) DG(E13):DC(D15) DG(E14):DC(D14) DA(E15):DT(D13) DT(E16):DA(D12) DT(E17):DA(D11) DG(E18):DC(D10) DC(E19):DG(D9) DG(E20):DC(D8) DC(E21):DG(D7) DC(E22):DG(D6) DA(E23):DT(D5) DC(E24):DG(D4) DA(E25):DT(D3) DT(E26):DA(D2) chainA ( 6) ARG278 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 4 0 0 0 0 0 0 0 0 ( 9) ASN281 0 0 0 0 0 0 0 0 0 0 0 0 0 1 7 8 0 0 0 0 0 0 0 0 0 ( 12) ALA284 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 ( 13) VAL285 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 4 2 0 0 0 0 0 0 0 0 ( 16) SER288 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 ( 17) ARG289 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 6 12 10 0 0 0 0 0 0 prot.sequence eykirRerNniAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkqlpe >1h89_ABC: title=CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX2 organism=HOMO SAPIENS / MUS MUSCULUS DNA sequence DC(E2):DG(D26) DA(E3):DT(D25) DG(E4):DC(D24) DT(E5):DA(D23) DC(E6):DG(D22) DC(E7):DG(D21) DG(E8):DC(D20) DT(E9):DA(D19) DT(E10):DA(D18) DA(E11):DT(D17) DA(E12):DT(D16) DG(E13):DC(D15) DG(E14):DC(D14) DA(E15):DT(D13) DT(E16):DA(D12) DT(E17):DA(D11) DG(E18):DC(D10) DC(E19):DG(D9) DG(E20):DC(D8) DC(E21):DG(D7) DC(E22):DG(D6) DA(E23):DT(D5) DC(E24):DG(D4) DA(E25):DT(D3) DT(E26):DA(D2) chainA ( 6) ARG278 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 4 0 0 0 0 0 0 0 0 ( 9) ASN281 0 0 0 0 0 0 0 0 0 0 0 0 0 1 7 8 0 0 0 0 0 0 0 0 0 ( 12) ALA284 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 ( 13) VAL285 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 4 2 0 0 0 0 0 0 0 0 ( 16) SER288 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 ( 17) ARG289 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 6 12 10 0 0 0 0 0 0 chainB ( 6) ARG278 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 5 0 0 0 0 ( 9) ASN281 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 7 3 0 0 ( 10) ASN282 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 ( 12) ALA284 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 ( 13) VAL285 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 5 0 0 0 ( 16) SER288 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 ( 17) ARG289 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 12 7 4 0 0 0 0 chainC ( 52) LYS128 0 0 0 7 7 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 55) ARG131 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 56) GLU132 0 0 0 0 0 1 10 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (103) ASN179 0 0 0 0 0 0 0 10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (106) LYS182 0 0 0 0 0 4 12 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (107) ASN183 0 0 0 0 0 0 0 2 10 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (110) ASN186 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (111) SER187 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence eykirRerNniAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkqlpe/eykirRerNNiAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkqlpe/qcqhrwqkvlnpelikgpwtkeedqrviklvqkygpkrwsviakhlkgrigKqcRErwhnhlnpevkktswteeedriiyqahkrlgnrwaeiakllpgrtdNaiKNhwNStmrr >1h8a_ABC: title=CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX3 organism=HOMO SAPIENS / AVIAN MYELOBLASTOSIS VIRUS DNA sequence DC(E2):DG(D26) DA(E3):DT(D25) DG(E4):DC(D24) DT(E5):DA(D23) DC(E6):DG(D22) DC(E7):DG(D21) DG(E8):DC(D20) DT(E9):DA(D19) DT(E10):DA(D18) DA(E11):DT(D17) DA(E12):DT(D16) DG(E13):DC(D15) DG(E14):DC(D14) DA(E15):DT(D13) DT(E16):DA(D12) DT(E17):DA(D11) DG(E18):DC(D10) DC(E19):DG(D9) DG(E20):DC(D8) DC(E21):DG(D7) DC(E22):DG(D6) DA(E23):DT(D5) DC(E24):DG(D4) DA(E25):DT(D3) DT(E26):DA(D2) chainA ( 12) ARG278 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 4 0 0 0 0 0 0 0 0 ( 15) ASN281 0 0 0 0 0 0 0 0 0 0 0 0 0 1 6 7 1 0 0 0 0 0 0 0 0 ( 18) ALA284 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 ( 19) VAL285 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 5 2 0 0 0 0 0 0 0 0 ( 22) SER288 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 ( 23) ARG289 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5 13 11 0 0 0 0 0 0 chainB ( 11) ARG278 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 4 0 0 0 0 ( 14) ASN281 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5 8 3 0 0 ( 15) ASN282 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 ( 17) ALA284 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 ( 18) VAL285 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 5 0 0 0 ( 21) SER288 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 ( 22) ARG289 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 11 7 2 0 0 0 0 chainC ( 42) LYS128 0 0 0 7 7 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 45) ARG131 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) GLU132 0 0 0 0 0 2 9 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 93) ASN179 0 0 0 0 0 0 0 10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 96) LYS182 0 0 0 0 0 4 11 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 97) ASN183 0 0 0 0 0 0 0 2 10 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (100) ASN186 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (101) SER187 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence vdkhsdeykirRerNniAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkql/dkhsdeykirRerNNiAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkql/npelnkgpwtkeedqrviehvqkygpkrwsdiakhlkgrigKqcRErwhnhlnpevkktswteeedriiyqahkrlgnrwaeiakllpgrtdNavKNhwNStmrr >1h8a_B:Leucine_zipper_domain; title=CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX3 organism=? DNA sequence DA(D2):DT(E26) DT(D3):DA(E25) DG(D4):DC(E24) DT(D5):DA(E23) DG(D6):DC(E22) DG(D7):DC(E21) DC(D8):DG(E20) DG(D9):DC(E19) DC(D10):DG(E18) DA(D11):DT(E17) DA(D12):DT(E16) DT(D13):DA(E15) DC(D14):DG(E14) DC(D15):DG(E13) DT(D16):DA(E12) DT(D17):DA(E11) DA(D18):DT(E10) DA(D19):DT(E9) DC(D20):DG(E8) DG(D21):DC(E7) DG(D22):DC(E6) DA(D23):DT(E5) DC(D24):DG(E4) DT(D25):DA(E3) DG(D26):DC(E2) chainB ( 11) ARG278 0 0 0 0 4 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 14) ASN281 0 0 3 8 5 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 15) ASN282 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 17) ALA284 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 18) VAL285 0 0 0 5 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 21) SER288 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 22) ARG289 0 0 0 0 2 7 11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence dkhsdeykirRerNNiAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkql >1h9d_C:p53-like_transcription_factors; title=AML1/CBF-BETA/DNA COMPLEX organism=HOMO SAPIENS DNA sequence DG(G1):DC(H10) DT(G2):DA(H9) DT(G3):DA(H8) DG(G4):DC(H7) DC(G5):DG(H6) DG(G6):DC(H5) DG(G7):DC(H4) DT(G8):DA(H3) DT(G9):DA(H2) DG(G10):DC(H1) chainC ( 27) ARG80 0 0 3 14 4 0 0 0 0 0 ( 89) ARG142 0 0 0 0 0 0 0 0 6 7 (117) VAL170 0 0 0 0 0 4 2 0 0 0 (118) ASP171 0 0 0 0 4 6 9 0 0 0 (121) ARG174 0 0 0 0 17 9 2 0 0 0 (124) ARG177 0 0 0 0 0 8 8 4 0 0 prot.sequence vladhpgelvrtdspnflcsvlpthwRcnktlpiafkvvalgdvpdgtlvtvmagndenysaelrnataamknqvarfndlrfvgrsgRgksftltitvftnppqvatyhraikitVDgpRepRr >1h9t_AB: title=FADR, FATTY ACID RESPONSIVE TRANSCRIPTION FACTOR FROM E. COLI IN COMPLEX WITH FADB OPERATOR organism=ESCHERICHIA COLI DNA sequence DC(X1):DG(Y19) DA(X2):DT(Y18) DT(X3):DA(Y17) DC(X4):DG(Y16) DT(X5):DA(Y15) DG(X6):DC(Y14) DG(X7):DC(Y13) DT(X8):DA(Y12) DA(X9):DT(Y11) DC(X10):DG(Y10) DG(X11):DC(Y9) DA(X12):DT(Y8) DC(X13):DG(Y7) DC(X14):DG(Y6) DA(X15):DT(Y5) DG(X16):DC(Y4) DA(X17):DT(Y3) DT(X18):DA(Y2) DC(X19):DG(Y1) chainA ( 31) ARG35 0 0 0 0 0 0 0 0 0 0 0 0 3 7 6 0 0 0 0 ( 40) THR44 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 ( 41) ARG45 0 0 0 0 0 0 0 0 0 0 0 4 14 7 0 0 0 0 0 ( 42) THR46 0 0 0 0 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 ( 45) ARG49 0 0 0 0 0 0 0 0 0 0 0 4 1 0 0 0 0 0 0 ( 46) GLU50 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 ( 61) HIS65 0 0 0 0 0 0 0 0 0 0 0 0 0 9 7 2 0 0 0 chainB ( 31) ARG35 0 0 0 0 4 14 3 0 0 0 0 0 0 0 0 0 0 0 0 ( 40) THR44 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 ( 41) ARG45 0 0 0 0 0 8 15 2 0 0 0 0 0 0 0 0 0 0 0 ( 42) THR46 0 0 0 0 0 0 0 0 1 6 4 0 0 0 0 0 0 0 0 ( 45) ARG49 0 0 0 0 0 0 2 4 0 0 0 0 0 0 0 0 0 0 0 ( 46) GLU50 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 ( 61) HIS65 0 0 0 0 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence aqspagfaeeyiiesiwnnrfppgtilpaeRelseligvTRTtlREvlqrlardgwltiqHgkptkvnnfwetsglniletlarldhesvpqlidnllsvrtnistifirtafrqhpdkaqevlatanevadhadafaeldynifrglafasgnpiyglilngmkglytrigrhyfanpearslalgfyhklsalcsegahdqvyetvrryghesgeiwhrmqknllaiqgr/aqspagfaeeyiiesiwnnrfppgtilpaeRelseligvTRTtlREvlqrlardgwltiqHgkptkvnnfwetsglniletlarldhesvpqlidnllsvrtnistifirtafrqhpdkaqevlatanevadhadafaeldynifrglafasgnpiyglilngmkglytrigrhyfanpearslalgfyhklsalcsegahdqvyetvrryghesgeiwhrmqknl >1hao_H:?;Trypsin-like_serine_proteases;?;?; title=COMPLEX OF HUMAN ALPHA-THROMBIN WITH A 15MER OLIGONUCLEOTIDE GGTTGGTGTGGTTGG (BASED ON NMR MODEL OF DNA) organism=HOMO SAPIENS DNA sequence DG(D414) DT(D413) DT(D412) DG(D411) DG(D410) DT(D409) DG(D408) DT(D407) DG(D406) DG(D401):DG(D406) DG(D402):DG(D405) DT(D404) DT(D403) chainH ( 9) ILE24 0 0 3 0 0 0 0 0 0 0 0 0 0 ( 66) HIS71 0 0 4 0 0 0 0 0 0 0 0 0 0 ( 70) ARG75 0 5 3 10 0 0 0 0 0 0 12 4 0 ( 71) TYR76 0 0 0 0 0 0 0 0 0 0 0 4 18 ( 72) GLU77 0 0 10 0 0 0 0 0 0 0 0 0 0 ( 73) ARG77A 24 12 0 0 0 0 0 0 0 0 1 7 0 ( 74) ASN78 0 2 0 0 0 0 0 0 0 0 0 0 0 ( 75) ILE79 0 0 6 0 0 0 0 0 0 0 0 0 0 ( 78) ILE82 0 0 0 0 0 0 0 0 0 0 0 0 1 prot.sequence ivegsdaeIgmspwqvmlfrkspqellcgaslisdrwvltaahcllyppwdknftendllvrigkHsrtRYeRNIekIsmlekiyihprynwrenldrdialmklkkpvafsdyihpvclpdretaasllqagykgrvtgwgnlketwgqpsvlqvvnlpiverpvckdstriritdnmfcagykpdegkrgdacegdsggpfvmkspfnnrwyqmgivswgegcdrdgkygfythvfrlkkwiqkvidqfge >1hbx_ABG: title=TERNARY COMPLEX OF SAP-1 AND SRF WITH SPECIFIC SRE DNA organism=HOMO SAPIENS DNA sequence DA(C9):DT(W9) DT(C8):DA(W8) DG(C7):DC(W7) DG(C6):DC(W6) DC(C5):DG(W5) DC(C4):DG(W4) DT(C3):DA(W3) DA(C2):DT(W2) DA(C1):DT(W1) DT(C-1):DA(W-1) DT(C-2):DA(W-2) DA(C-3):DT(W-3) DG(C-4):DC(W-4) DG(C-5):DC(W-5) DA(C-6):DT(W-6) DC(C-7):DG(W-7) DT(C-8):DA(W-8) DT(C-9):DA(W-9) DC(C-10):DG(W-10) DC(C-11):DG(W-11) DG(C-12):DC(W-12) DG(C-13):DC(W-13) DT(C-14):DA(W-14) DG(C-15):DC(W-15) DT(C-16):DA(W-16) chainA ( 4) THR140 0 0 0 0 0 0 0 0 0 0 0 0 6 5 0 0 0 0 0 0 0 0 0 0 0 ( 7) ARG143 0 0 0 0 0 0 0 0 0 9 13 8 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 22) TYR158 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 ( 27) LYS163 0 0 0 0 0 0 0 0 0 0 0 0 5 5 6 0 0 0 0 0 0 0 0 0 0 chainB ( 3) THR140 0 0 0 0 3 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 6) ARG143 0 0 0 0 0 0 8 11 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 22) THR159 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) SER162 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 26) LYS163 0 0 0 4 5 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainG ( 57) LYS58 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 ( 60) ARG61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 15 28 0 0 0 0 0 ( 63) ARG64 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16 18 2 0 0 0 ( 64) TYR65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 5 1 0 0 0 0 0 0 prot.sequence gkkTrgRvkikmefidnklrrYttfsKrktgimkkayelstltgtqvlllvasetghvytfatrklqpmitsetgkaliqtclnspd/kkTrgRvkikmefidnklrryTtfSKrktgimkkayelstltgtqvlllvasetghvytfatrklqpmitsetgkaliqtclnspd/dsaitlwqfllqllqkpqnkhmicwtsndgqfkllqaeevarlwgirknkpnmnydKlsRalRYyyvkniikkvngqkfvykfvsypeilnmsrndyihsglyssftlnsln >1hbx_DH: title=TERNARY COMPLEX OF SAP-1 AND SRF WITH SPECIFIC SRE DNA organism=HOMO SAPIENS DNA sequence DA(F9):DT(X9) DT(F8):DA(X8) DG(F7):DC(X7) DG(F6):DC(X6) DC(F5):DG(X5) DC(F4):DG(X4) DT(F3):DA(X3) DA(F2):DT(X2) DA(F1):DT(X1) DT(F-1):DA(X-1) DT(F-2):DA(X-2) DA(F-3):DT(X-3) DG(F-4):DC(X-4) DG(F-5):DC(X-5) DA(F-6):DT(X-6) DC(F-7):DG(X-7) DT(F-8):DA(X-8) DT(F-9):DA(X-9) DC(F-10):DG(X-10) DC(F-11):DG(X-11) DG(F-12):DC(X-12) DG(F-13):DC(X-13) DT(F-14):DA(X-14) DG(F-15):DC(X-15) DT(F-16):DA(X-16) chainD ( 3) THR140 0 0 0 0 0 0 0 0 0 0 0 0 7 5 0 0 0 0 0 0 0 0 0 0 0 ( 6) ARG143 0 0 0 0 0 0 0 0 0 8 11 8 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 21) TYR158 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 ( 26) LYS163 0 0 0 0 0 0 0 0 0 0 0 0 6 6 5 0 0 0 0 0 0 0 0 0 0 chainH ( 55) ASP57 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 ( 56) LYS58 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 ( 59) ARG61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 13 23 0 0 0 0 0 ( 62) ARG64 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 18 0 0 0 0 ( 63) TYR65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 7 3 0 0 0 0 0 0 0 prot.sequence kkTrgRvkikmefidnklrrYttfsKrktgimkkayelstltgtqvlllvasetghvytfatrklqpmitsetgkaliqtclnspd/saitlwqfllqllqkpqnkhmicwtsndgqfkllqaeevarlwgirknkpnmnyDKlsRalRYyyvkniikkvngqkfvykfvsypeilnmsrndyihsglyssftlns >1hcq_AB: title=THE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR DNA-BINDING DOMAIN BOUND TO DNA: HOW RECEPTORS DISCRIMINATE BETWEEN THEIR RESPONSE ELEMENTS organism=Homo sapiens DNA sequence DC(D20):DG(C18) DA(D21):DT(C17) DG(D22):DC(C16) DG(D23):DC(C15) DT(D24):DA(C14) DC(D25):DG(C13) DA(D26):DT(C12) DC(D27):DG(C11) DT(D28):DA(C10) DG(D29):DC(C9) DT(D30):DA(C8) DG(D31):DC(C7) DA(D32):DT(C6) DC(D33):DG(C5) DC(D34):DG(C4) DT(D35):DA(C3) DG(D36):DC(C2) chainA ( 25) GLU25 0 0 0 0 0 0 0 0 0 0 0 0 6 7 0 0 0 ( 28) LYS28 0 0 0 0 0 0 0 0 0 0 0 0 0 4 7 3 0 ( 29) ALA29 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 ( 32) LYS32 0 0 0 0 0 0 0 0 0 0 0 0 7 8 1 0 0 ( 33) ARG33 0 0 0 0 0 0 0 0 0 0 10 5 0 0 0 0 0 chainB ( 22) GLU25 0 0 0 5 5 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) LYS28 0 4 10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 26) ALA29 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 ( 29) LYS32 0 0 1 7 3 0 0 0 0 0 0 0 0 0 0 0 0 ( 30) ARG33 0 0 0 0 0 7 9 0 0 0 0 0 0 0 0 0 0 prot.sequence mketrycavcndyasgyhygvwscEgcKAffKRsiqghndymcpatnqctidknrrkscqacrlrkcyevgmmk/trycavcndyasgyhygvwscEgcKAffKRsiqghndymcpatnqctidknrrkscqacrlrkcyevgmmk >1hcq_EF: title=THE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR DNA-BINDING DOMAIN BOUND TO DNA: HOW RECEPTORS DISCRIMINATE BETWEEN THEIR RESPONSE ELEMENTS organism=Homo sapiens DNA sequence DC(G2):DG(H36) DA(G3):DT(H35) DG(G4):DC(H34) DG(G5):DC(H33) DT(G6):DA(H32) DC(G7):DG(H31) DA(G8):DT(H30) DC(G9):DG(H29) DA(G10):DT(H28) DG(G11):DC(H27) DT(G12):DA(H26) DG(G13):DC(H25) DA(G14):DT(H24) DC(G15):DG(H23) DC(G16):DG(H22) DT(G17):DA(H21) DG(G18):DC(H20) chainE ( 25) GLU25 0 0 1 9 5 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) LYS28 0 3 10 4 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) ALA29 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 ( 32) LYS32 0 0 1 8 3 0 0 0 0 0 0 0 0 0 0 0 0 ( 33) ARG33 0 0 0 0 0 9 10 0 0 0 0 0 0 0 0 0 0 chainF ( 24) GLU25 0 0 0 0 0 0 0 0 0 0 0 0 5 6 0 0 0 ( 27) LYS28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 4 0 ( 28) ALA29 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 ( 31) LYS32 0 0 0 0 0 0 0 0 0 0 0 0 3 7 1 0 0 ( 32) ARG33 0 0 0 0 0 0 0 0 0 0 11 7 0 0 0 0 0 prot.sequence mketrycavcndyasgyhygvwscEgcKAffKRsiqghndymcpatnqctidknrrkscqacrlrkcyevgmmk/ketrycavcndyasgyhygvwscEgcKAffKRsiqgdymcpatnqctidknrrkscqacrlrkcyevgmmk >1hcr_A:Homeodomain-like; title=HIN RECOMBINASE BOUND TO DNA: THE ORIGIN OF SPECIFICITY IN MAJOR AND MINOR GROOVE INTERACTIONS organism=? DNA sequence DG(B3):DC(C29) DT(B4):DA(C28) DT(B5):DA(C27) DT(B6):DA(C26) DT(B7):DA(C25) DT(B8):DA(C24) DG(B9):DC(C23) DA(B10):DT(C22) DT(B11):DA(C21) DA(B12):DT(C20) DA(B13):DT(C19) DG(B14):DC(C18) DA(B15):DT(C17) chainA ( 2) ARG140 0 0 7 13 3 2 0 0 0 0 0 0 0 ( 36) SER174 0 0 0 0 0 0 1 11 7 0 0 0 0 ( 37) THR175 0 0 0 0 0 0 2 0 0 0 0 0 0 ( 39) TYR177 0 0 0 0 0 0 0 0 0 3 13 0 0 ( 40) ARG178 0 0 0 0 0 10 8 0 0 0 0 0 0 ( 47) ILE185 0 0 0 0 0 0 0 0 0 0 0 7 5 ( 48) LYS186 0 0 0 0 0 0 0 0 0 1 0 0 0 ( 49) LYS187 0 0 0 0 0 0 0 0 0 1 0 0 0 ( 52) ASN190 0 0 0 0 0 0 8 9 0 0 0 0 0 prot.sequence gRprainkheqeqisrllekghprqqlaiifgigvSTlYRyfpassIKKrmN >1hdd_C:Homeodomain-like; title=CRYSTAL STRUCTURE OF AN ENGRAILED HOMEODOMAIN-DNA COMPLEX AT 2.8 ANGSTROMS RESOLUTION: A FRAMEWORK FOR UNDERSTANDING HOMEODOMAIN-DNA INTERACTIONS organism=Drosophila melanogaster DNA sequence DT(B23):DA(A21) DT(B24):DA(A20) DA(B25):DT(A19) DG(B26):DC(A18) DG(B27):DC(A17) DT(B28):DA(A16) DA(B29):DT(A15) DA(B30):DT(A14) DT(B31):DA(A13) DT(B32):DA(A12) DA(B33):DT(A11) DC(B34):DG(A10) DA(B35):DT(A9) DT(B36):DA(A8) DG(B37):DC(A7) DG(B38):DC(A6) DC(B39):DG(A5) DA(B40):DT(A4) DA(B41):DT(A3) DA(B42):DT(A2) chainC ( 1) ARG3 0 0 0 0 0 0 0 0 1 4 3 0 0 0 0 0 0 0 0 0 ( 3) ARG5 0 0 0 0 0 0 0 0 0 2 8 10 0 0 0 0 0 0 0 0 ( 45) ILE47 0 0 0 0 0 0 0 6 2 0 0 0 0 0 0 0 0 0 0 0 ( 48) GLN50 0 0 0 0 0 4 0 2 0 0 0 0 0 0 0 0 0 0 0 0 ( 49) ASN51 0 0 0 0 0 0 0 0 9 5 0 0 0 0 0 0 0 0 0 0 ( 53) LYS55 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 prot.sequence RpRtafsseqlarlkrefnenrylterrrqqlsselglneaqikIwfQNkraKikks >1hdd_CD: title=CRYSTAL STRUCTURE OF AN ENGRAILED HOMEODOMAIN-DNA COMPLEX AT 2.8 ANGSTROMS RESOLUTION: A FRAMEWORK FOR UNDERSTANDING HOMEODOMAIN-DNA INTERACTIONS organism=Drosophila melanogaster DNA sequence DT(B23):DA(A21) DT(B24):DA(A20) DA(B25):DT(A19) DG(B26):DC(A18) DG(B27):DC(A17) DT(B28):DA(A16) DA(B29):DT(A15) DA(B30):DT(A14) DT(B31):DA(A13) DT(B32):DA(A12) DA(B33):DT(A11) DC(B34):DG(A10) DA(B35):DT(A9) DT(B36):DA(A8) DG(B37):DC(A7) DG(B38):DC(A6) DC(B39):DG(A5) DA(B40):DT(A4) DA(B41):DT(A3) DA(B42):DT(A2) chainC ( 1) ARG3 0 0 0 0 0 0 0 0 1 4 3 0 0 0 0 0 0 0 0 0 ( 3) ARG5 0 0 0 0 0 0 0 0 0 2 8 10 0 0 0 0 0 0 0 0 ( 45) ILE47 0 0 0 0 0 0 0 6 2 0 0 0 0 0 0 0 0 0 0 0 ( 48) GLN50 0 0 0 0 0 4 0 2 0 0 0 0 0 0 0 0 0 0 0 0 ( 49) ASN51 0 0 0 0 0 0 0 0 9 5 0 0 0 0 0 0 0 0 0 0 ( 53) LYS55 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 chainD ( 45) ILE47 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 48) GLN50 1 1 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence RpRtafsseqlarlkrefnenrylterrrqqlsselglneaqikIwfQNkraKikks/rprtafsseqlarlkrefnenrylterrrqqlsselglneaqikIwfQnkrakikks >1hf0_AB: title=CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF OCT-1 BOUND TO DNA AS A DIMER organism=HOMO SAPIENS DNA sequence DC(N1):DG(M22) DT(N2):DA(M21) DC(N3):DG(M20) DC(N4):DG(M19) DA(N5):DT(M18) DT(N6):DA(M17) DT(N7):DA(M16) DT(N8):DA(M15) DG(N9):DC(M14) DC(N10):DG(M13) DC(N11):DG(M12) DT(N12):DA(M11) DT(N13):DA(M10) DT(N14):DA(M9) DC(N15):DG(M8) DA(N16):DT(M7) DA(N17):DT(M6) DA(N18):DT(M5) DT(N19):DA(M4) DG(N20):DC(M3) DT(N21):DA(M2) DG(N22):DC(M1) chainA ( 22) GLN27 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 ( 38) SER43 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 39) GLN44 0 0 0 0 0 0 0 0 0 0 1 13 8 0 0 0 0 0 0 0 0 0 ( 40) THR45 0 0 0 0 0 0 0 0 5 6 5 0 0 0 0 0 0 0 0 0 0 0 ( 43) SER48 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 ( 44) ARG49 0 0 0 0 0 0 0 14 16 2 0 0 0 0 0 0 0 0 0 0 0 0 ( 71) ARG102 0 0 0 0 0 1 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 74) ARG105 0 0 0 0 0 0 5 10 14 0 0 0 0 0 0 0 0 0 0 0 0 0 (115) ARG146 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (116) VAL147 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (119) SER150 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (120) ASN151 0 0 0 0 1 10 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (123) GLN154 0 0 0 15 10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 22) GLN27 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 ( 38) SER43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 ( 39) GLN44 0 0 0 0 0 0 0 0 0 0 2 11 3 0 0 0 0 0 0 0 0 0 ( 40) THR45 0 0 0 0 0 0 0 0 0 0 0 0 8 7 7 0 0 0 0 0 0 0 ( 43) SER48 0 0 0 0 0 0 0 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 ( 44) ARG49 0 0 0 0 0 0 0 0 0 0 0 0 0 3 14 15 0 0 0 0 0 0 ( 71) ARG102 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 ( 74) ARG105 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 10 7 0 0 0 0 0 (116) VAL147 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 (119) SER150 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 (120) ASN151 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 10 0 0 0 0 (123) GLN154 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 9 16 0 0 prot.sequence leeleqfaktfkqrriklgftQgdvglamgklygndfSQTtiSRfealnlsfknmsklkpllekwlndaeRkkRtsietnirvaleksflenqkptseeitmiadqlnmekeviRVwfSNrrQkekri/leeleqfaktfkqrriklgftQgdvglamgklygndfSQTtiSRfealnlsfknmsklkpllekwlndaeRkkRtsietnirvaleksflenqkptseeitmiadqlnmekevirVwfSNrrQkekri >1hf0_B:lambda_repressor-like_DNA-binding_domains;Homeodomain-like; title=CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF OCT-1 BOUND TO DNA AS A DIMER organism=HOMO SAPIENS DNA sequence DC(N1):DG(M22) DT(N2):DA(M21) DC(N3):DG(M20) DC(N4):DG(M19) DA(N5):DT(M18) DT(N6):DA(M17) DT(N7):DA(M16) DT(N8):DA(M15) DG(N9):DC(M14) DC(N10):DG(M13) DC(N11):DG(M12) DT(N12):DA(M11) DT(N13):DA(M10) DT(N14):DA(M9) DC(N15):DG(M8) DA(N16):DT(M7) DA(N17):DT(M6) DA(N18):DT(M5) DT(N19):DA(M4) DG(N20):DC(M3) DT(N21):DA(M2) DG(N22):DC(M1) chainB ( 22) GLN27 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 ( 38) SER43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 ( 39) GLN44 0 0 0 0 0 0 0 0 0 0 2 11 3 0 0 0 0 0 0 0 0 0 ( 40) THR45 0 0 0 0 0 0 0 0 0 0 0 0 8 7 7 0 0 0 0 0 0 0 ( 43) SER48 0 0 0 0 0 0 0 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 ( 44) ARG49 0 0 0 0 0 0 0 0 0 0 0 0 0 3 14 15 0 0 0 0 0 0 ( 71) ARG102 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 ( 74) ARG105 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 10 7 0 0 0 0 0 (116) VAL147 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 (119) SER150 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 (120) ASN151 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 10 0 0 0 0 (123) GLN154 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 9 16 0 0 prot.sequence leeleqfaktfkqrriklgftQgdvglamgklygndfSQTtiSRfealnlsfknmsklkpllekwlndaeRkkRtsietnirvaleksflenqkptseeitmiadqlnmekevirVwfSNrrQkekri >1hht_R:DNA/RNA_polymerases; title=RNA DEPENDENT RNA POLYMERASE FROM DSRNA BACTERIOPHAGE PHI6 PLUS TEMPLATE organism=BACTERIOPHAGE PHI-6 DNA sequence DT(F3) DT(F4) DT(F5) DC(F6) DC(F7) chainR ( 26) GLN26 4 0 0 0 0 ( 30) ARG30 5 3 0 0 0 (144) LYS144 0 0 0 0 2 (202) VAL202 0 0 3 0 0 (204) ARG204 0 0 17 3 0 (272) ALA272 0 0 5 0 0 (288) GLN288 0 0 0 0 13 (393) SER393 0 0 5 0 0 (398) THR398 0 0 0 1 0 (530) TYR530 0 0 2 0 0 (626) ASN626 0 0 0 1 0 (629) GLN629 0 0 0 23 0 (633) THR633 0 0 0 0 5 (634) GLU634 0 0 0 0 13 (642) HIS642 0 0 0 0 5 (646) MET646 0 0 0 0 4 prot.sequence prrapafplsdikaqmlfannikaqQaskRsfkegaietyegllsvdprflsfknelsryltdhfpanvdeygrvygngvrtnffgmrhmngfpmipatwplasnlkkradadladgpvserdnllfraavrlmfsdlepvplKirkgsstcipyfsndmgtkieiaeralekaeeagnlmlqgkfddayqlhqmggayyvVyRaqstdaitldpktgkfvskdrmvadfeyavtggeqgslfaaskdasrlkeqygidvpdgffcerrrtAmggpfalnapimavaQpvrnkiyskyaytfhhttrlnkeekvkewslcvatdvsdhdtfwpgwlrdlicdellnmgyapwwvklfetslklpvyvgapapeqghtllgdpsnpdlevglsSgqgaTdlmgtllmsitylvmqldhtaphlnsrikdmpsacrfldsywqgheeirqisksddamlgwtkgralvgghrlfemlkegkvnpspymkisyehggaflgdillydsrrepgsaifvgninsmlnnqfspeYgvqsgvrdrskrkrpfpglawasmkdtygacpiysdvleaiercwwnafgesyrayredmlkrdtlelsryvasmarqaglaeltpidlevladpNklQykwTEadvsaniHevlMhgvsvekterflrsvmpr >1hjb_ABC: title=CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN AND C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER organism=HOMO SAPIENS / MUS MUSCULUS DNA sequence DA(G2):DT(H26) DA(G3):DT(H25) DG(G4):DC(H24) DA(G5):DT(H23) DT(G6):DA(H22) DT(G7):DA(H21) DT(G8):DA(H20) DC(G9):DG(H19) DC(G10):DG(H18) DA(G11):DT(H17) DA(G12):DT(H16) DA(G13):DT(H15) DC(G14):DG(H14) DT(G15):DA(H13) DC(G16):DG(H12) DT(G17):DA(H11) DG(G18):DC(H10) DT(G19):DA(H9) DG(G20):DC(H8) DG(G21):DC(H7) DT(G22):DA(H6) DT(G23):DA(H5) DG(G24):DC(H4) DC(G25):DG(H3) DG(G26):DC(H2) chainA ( 11) ARG278 0 0 0 0 0 8 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 14) ASN281 0 0 0 1 4 5 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 17) ALA284 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 18) VAL285 0 0 0 0 2 5 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 21) SER288 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 22) ARG289 0 0 0 0 0 0 4 15 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 11) ARG278 0 0 0 0 0 0 0 0 0 7 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 14) ASN281 0 0 0 0 0 0 0 0 0 0 6 8 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 15) ASN282 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 17) ALA284 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 18) VAL285 0 0 0 0 0 0 0 0 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 21) SER288 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 22) ARG289 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainC ( 21) ARG80 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 8 0 0 0 0 0 0 0 0 ( 83) ARG142 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 6 0 0 (111) VAL170 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 (112) ASP171 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 6 0 0 0 0 0 (115) ARG174 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 10 2 0 0 0 0 0 (118) ARG177 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 11 5 0 0 0 0 prot.sequence dkhsdeykirRerNniAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkq/dkhsdeykirRerNNiAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkql/gelvrtdspnflcsvlpthwRcnktlpiafkvvalgdvpdgtlvtvmagndenysaelrnataamknqvarfndlrfvgrsgRgksftltitvftnppqvatyhraikitVDgpRepRrh >1hjb_D:Leucine_zipper_domain; title=CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN AND C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER organism=? DNA sequence DA(I2):DT(J26) DA(I3):DT(J25) DG(I4):DC(J24) DA(I5):DT(J23) DT(I6):DA(J22) DT(I7):DA(J21) DT(I8):DA(J20) DC(I9):DG(J19) DC(I10):DG(J18) DA(I11):DT(J17) DA(I12):DT(J16) DA(I13):DT(J15) DC(I14):DG(J14) DT(I15):DA(J13) DC(I16):DG(J12) DT(I17):DA(J11) DG(I18):DC(J10) DT(I19):DA(J9) DG(I20):DC(J8) DG(I21):DC(J7) DT(I22):DA(J6) DT(I23):DA(J5) DG(I24):DC(J4) DC(I25):DG(J3) DG(I26):DC(J2) chainD ( 11) ARG278 0 0 0 0 0 6 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 14) ASN281 0 0 0 2 9 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 18) VAL285 0 0 0 0 5 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 21) SER288 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 22) ARG289 0 0 0 0 0 0 4 10 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence dkhsdeykirRerNniaVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkqlp >1hjb_DEF: title=CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN AND C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER organism=MUS MUSCULUS / HOMO SAPIENS DNA sequence DC(J2):DG(I26) DG(J3):DC(I25) DC(J4):DG(I24) DA(J5):DT(I23) DA(J6):DT(I22) DC(J7):DG(I21) DC(J8):DG(I20) DA(J9):DT(I19) DC(J10):DG(I18) DA(J11):DT(I17) DG(J12):DC(I16) DA(J13):DT(I15) DG(J14):DC(I14) DT(J15):DA(I13) DT(J16):DA(I12) DT(J17):DA(I11) DG(J18):DC(I10) DG(J19):DC(I9) DA(J20):DT(I8) DA(J21):DT(I7) DA(J22):DT(I6) DT(J23):DA(I5) DC(J24):DG(I4) DT(J25):DA(I3) DT(J26):DA(I2) chainD ( 11) ARG278 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 6 0 0 0 0 0 ( 14) ASN281 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 9 2 0 0 0 ( 18) VAL285 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 5 0 0 0 0 ( 21) SER288 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 ( 22) ARG289 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 10 4 0 0 0 0 0 0 chainE ( 11) ARG278 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 8 0 0 0 0 0 0 0 0 0 ( 14) ASN281 0 0 0 0 0 0 0 0 0 0 0 0 2 5 4 0 0 0 0 0 0 0 0 0 0 ( 15) ASN282 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 ( 17) ALA284 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 ( 18) VAL285 0 0 0 0 0 0 0 0 0 0 0 0 0 3 4 1 1 0 0 0 0 0 0 0 0 ( 21) SER288 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 ( 22) ARG289 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 2 0 0 0 0 0 0 0 0 chainF ( 21) ARG80 0 0 0 0 0 0 0 0 8 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 83) ARG142 0 0 7 12 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (112) ASP171 0 0 0 0 0 8 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (115) ARG174 0 0 0 0 0 2 14 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (118) ARG177 0 0 0 0 6 11 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence dkhsdeykirRerNniaVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkqlp/dkhsdeykirRerNNiAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkqlp/gelvrtdspnflcsvlpthwRcnktlpiafkvvalgdvpdgtlvtvmagndenysaelrnataamknqvarfndlrfvgrsgRgksftltitvftnppqvatyhraikitvDgpRepRrh >1hlo_AB: title=THE CRYSTAL STRUCTURE OF AN INTACT HUMAN MAX-DNA COMPLEX: NEW INSIGHTS INTO MECHANISMS OF TRANSCRIPTIONAL CONTROL organism=Homo sapiens DNA sequence DC(C102):DG(D126) DA(C103):DT(D125) DC(C104):DG(D124) DC(C105):DG(D123) DA(C106):DT(D122) DC(C107):DG(D121) DG(C108):DC(D120) DT(C109):DA(D119) DG(C110):DC(D118) DG(C111):DC(D117) DT(C112):DA(D116) chainA ( 16) HIS18 0 0 0 0 0 0 0 7 11 5 0 ( 17) ASN19 0 0 0 0 0 0 0 4 0 0 0 ( 20) GLU22 0 0 0 0 0 0 2 11 7 0 0 ( 23) ARG25 0 0 0 0 0 0 0 0 9 1 0 ( 24) ARG26 0 0 0 0 0 10 9 0 0 0 0 chainB ( 9) HIS18 0 0 9 15 3 0 0 0 0 0 0 ( 10) ASN19 0 0 0 0 4 0 0 0 0 0 0 ( 12) LEU21 1 0 0 0 0 0 0 0 0 0 0 ( 13) GLU22 0 0 2 9 9 0 0 0 0 0 0 ( 16) ARG25 0 0 2 9 1 0 0 0 0 0 0 ( 17) ARG26 0 0 0 0 0 7 11 0 0 0 0 prot.sequence nddievesdadkrahHNalErkRRdhikdsfhslrdsvpslqgekasraqildkateyiqymrrknhthqqdiddlkrqn/sdadkrahHNaLErkRRdhikdsfhslrdsvpslqgekasraqildkateyiqymrrknhthqqdiddlkrqn >1hlo_B:HLH,_helix-loop-helix_DNA-binding_domain; title=THE CRYSTAL STRUCTURE OF AN INTACT HUMAN MAX-DNA COMPLEX: NEW INSIGHTS INTO MECHANISMS OF TRANSCRIPTIONAL CONTROL organism=Homo sapiens DNA sequence DC(C102):DG(D126) DA(C103):DT(D125) DC(C104):DG(D124) DC(C105):DG(D123) DA(C106):DT(D122) DC(C107):DG(D121) DG(C108):DC(D120) DT(C109):DA(D119) DG(C110):DC(D118) DG(C111):DC(D117) DT(C112):DA(D116) chainB ( 9) HIS18 0 0 9 15 3 0 0 0 0 0 0 ( 10) ASN19 0 0 0 0 4 0 0 0 0 0 0 ( 12) LEU21 1 0 0 0 0 0 0 0 0 0 0 ( 13) GLU22 0 0 2 9 9 0 0 0 0 0 0 ( 16) ARG25 0 0 2 9 1 0 0 0 0 0 0 ( 17) ARG26 0 0 0 0 0 7 11 0 0 0 0 prot.sequence sdadkrahHNaLErkRRdhikdsfhslrdsvpslqgekasraqildkateyiqymrrknhthqqdiddlkrqn >1hlv_A:Homeodomain-like; title=CRYSTAL STRUCTURE OF CENP-B(1-129) COMPLEXED WITH THE CENP-B BOX DNA organism=HOMO SAPIENS DNA sequence DA(C1):DT(B21) DA(C2):DT(B20) DT(C3):DA(B19) DC(C4):DG(B18) DC(C5):DG(B17) DC(C6):DG(B16) DG(C7):DC(B15) DT(C8):DA(B14) DT(C9):DA(B13) DT(C10):DA(B12) DC(C11):DG(B11) DC(C12):DG(B10) DA(C13):DT(B9) DA(C14):DT(B8) DC(C15):DG(B7) DG(C16):DC(B6) DA(C17):DT(B5) DA(C18):DT(B4) DG(C19):DC(B3) DG(C20):DC(B2) DC(C21):DG(B1) chainA ( 5) ARG5 0 0 0 0 0 0 0 0 0 0 0 9 9 12 0 0 0 0 0 0 0 ( 7) GLN7 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 ( 39) PRO39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 ( 40) SER40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 10 3 0 0 0 0 ( 41) THR41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 ( 43) SER43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 5 0 0 0 ( 44) THR44 0 0 0 0 0 0 0 0 0 0 0 0 0 2 7 0 0 0 0 0 0 ( 70) LYS70 0 0 0 0 0 0 0 1 3 7 0 0 0 0 0 0 0 0 0 0 0 (119) SER119 0 0 0 0 4 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (120) ASN120 0 0 9 8 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (124) ASP124 0 0 2 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (125) ARG125 0 0 0 0 2 15 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence mgpkRrQltfreksriiqeveenpdlrkgeiarrfnipPSTlSTilknkrailaserkygvastcrkTnKlspydkleglliawfqqiraaglpvkgiilkekalriaeelgmddftaSNgwlDRfrrrrs >1hlz_AB: title=CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA- BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENT organism=Homo sapiens DNA sequence DC(D621):DG(C619) DT(D622):DA(C618) DG(D623):DC(C617) DA(D624):DT(C616) DC(D625):DG(C615) DC(D626):DG(C614) DT(D627):DA(C613) DA(D628):DT(C612) DG(D629):DC(C611) DT(D630):DA(C610) DG(D631):DC(C609) DA(D632):DT(C608) DC(D633):DG(C607) DC(D634):DG(C606) DT(D635):DA(C605) DA(D636):DT(C604) DG(D637):DC(C603) DT(D638):DA(C602) DT(D639):DA(C601) DG(D640):DC(C600) chainA ( 22) GLU19 0 0 0 3 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) LYS22 0 0 0 0 1 6 4 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) ARG26 0 0 0 4 14 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 30) ARG27 0 11 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 79) ARG75 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 chainB ( 24) GLU19 0 0 0 0 0 0 0 0 0 0 0 7 5 0 0 0 0 0 0 0 ( 27) LYS22 0 0 0 0 0 0 0 0 0 0 0 0 1 7 3 0 0 0 0 0 ( 31) ARG26 0 0 0 0 0 0 0 0 0 0 0 3 12 1 0 0 0 0 0 0 ( 32) ARG27 0 0 0 0 0 0 0 0 0 11 8 0 0 0 0 0 0 0 0 0 ( 79) PHE73 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 1 0 0 ( 81) ARG75 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 7 1 prot.sequence vllckvcgdvasgfhygvlacEgcKgffRRsiqqniqykrclknencsivrinrnrcqqcrfkkclsvgmsrdavrfgRip/gmvllckvcgdvasgfhygvlacEgcKgffRRsiqqniqykrclknencsivrinrnrcqqcrfkkclsvgmsrdavrFgR >1hlz_B:Glucocorticoid_receptor-like_DNA-binding_domain; title=CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA- BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENT organism=Homo sapiens DNA sequence DC(C600):DG(D640) DA(C601):DT(D639) DA(C602):DT(D638) DC(C603):DG(D637) DT(C604):DA(D636) DA(C605):DT(D635) DG(C606):DC(D634) DG(C607):DC(D633) DT(C608):DA(D632) DC(C609):DG(D631) DA(C610):DT(D630) DC(C611):DG(D629) DT(C612):DA(D628) DA(C613):DT(D627) DG(C614):DC(D626) DG(C615):DC(D625) DT(C616):DA(D624) DC(C617):DG(D623) DA(C618):DT(D622) DG(C619):DC(D621) chainB ( 24) GLU19 0 0 0 0 0 0 0 5 7 0 0 0 0 0 0 0 0 0 0 0 ( 27) LYS22 0 0 0 0 0 3 7 1 0 0 0 0 0 0 0 0 0 0 0 0 ( 31) ARG26 0 0 0 0 0 0 1 12 3 0 0 0 0 0 0 0 0 0 0 0 ( 32) ARG27 0 0 0 0 0 0 0 0 0 8 11 0 0 0 0 0 0 0 0 0 ( 79) PHE73 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 81) ARG75 1 7 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence gmvllckvcgdvasgfhygvlacEgcKgffRRsiqqniqykrclknencsivrinrnrcqqcrfkkclsvgmsrdavrFgR >1hrz_A:HMG-box; title=THE 3D STRUCTURE OF THE HUMAN SRY-DNA COMPLEX SOLVED BY MULTI- DIMENSIONAL HETERONUCLEAR-EDITED AND-FILTERED NMR organism=? DNA sequence DG(B1):DC(C16) DC(B2):DG(C15) DA(B3):DT(C14) DC(B4):DG(C13) DA(B5):DT(C12) DA(B6):DT(C11) DA(B7):DT(C10) DC(B8):DG(C9) chainA ( 8) ASN10 0 0 0 9 2 0 0 0 ( 10) PHE12 0 0 0 0 11 3 0 0 ( 11) ILE13 0 0 0 0 5 11 0 0 ( 15) ARG17 0 0 0 0 0 0 1 0 ( 18) ARG20 0 0 0 0 0 0 2 2 ( 31) SER33 0 0 0 0 0 0 0 5 ( 33) ILE35 0 0 0 0 0 0 0 1 ( 34) SER36 0 0 0 0 0 0 3 0 ( 72) TYR74 0 0 18 1 0 0 0 0 prot.sequence drvkrpmNaFIvwsRdqRrkmalenprmrnSeISkqlgyqwkmlteaekwpffqeaqklqamhrekypnykYr >1hu0_A:DNA-glycosylase;TATA-box_binding_protein-like; title=CRYSTAL STRUCTURE OF AN HOGG1-DNA BOROHYDRIDE TRAPPED INTERMEDIATE COMPLEX organism=Homo sapiens DNA sequence DG(D1):DC(E30) DG(D2):DC(E29) DT(D3):DA(E28) DA(D4):DT(E27) DG(D5):DC(E26) DA(D6):DT(E25) DC(D7):DG(E24) DC(D8):DA(E22) DT(D9):DC(E21) DG(D10):DC(E20) DG(D11):DT(E19) DA(D12):DG(E18) DC(D13):DC(E17) DG(D14):DG(E16) chainA (138) ASN149 0 0 0 0 0 0 33 13 0 0 0 0 0 0 (139) ASN150 0 0 0 0 0 0 0 2 1 0 0 0 0 0 (140) ASN151 0 0 0 0 0 0 0 4 0 1 0 0 0 0 (143) ARG154 0 0 0 0 0 0 0 10 12 0 0 0 0 0 (192) TYR203 0 0 0 0 0 0 14 17 0 0 0 0 0 0 (193) ARG204 0 0 0 0 0 0 0 11 0 0 0 0 0 0 (196) TYR207 0 0 0 0 0 1 0 0 0 0 0 0 0 0 (282) PRO293 0 0 2 0 0 0 0 0 0 0 0 0 0 0 (283) GLN294 0 0 1 0 0 0 0 0 0 0 0 0 0 0 prot.sequence gseghrtlastpalwasipcprselrldlvlpsgqsfrwreqspahwsgvladqvwtltqteeqlhctvyrsqasrptpdeleavrkyfqldvtlaqlyhhwgsvdshfqevaqkfqgvrllrqdpieclfsficsSNNNiaRitgmverlcqafgprliqlddvtyhgfpslqalagpeveahlrklglgYRarYvsasaraileeqgglawlqqlressyeeahkalcilpgvgtkvadciclmaldkpqavpvdvhmwhiaqrdyswhpttsqakgpsPQtnkelgnffrslwgpyagwaqavlfsadlrq >1huo_A:Nucleotidyltransferase;DNA_polymerase_beta,_N-terminal_domain-like;PsbU/PolX_domain-like; title=CRYSTAL STRUCTURE OF DNA POLYMERASE BETA COMPLEXED WITH DNA AND CR- TMPPCP organism=Rattus norvegicus DNA sequence DA(T4):TTE(A338) DG(T5):DC(P7) DG(T6):DC(P6) DC(T7):DG(P5) DG(T8):DC(P4) DT(T9):DA(P3) DC(T10):DG(P2) DG(T11):DC(P1) chainA (140) ARG149 1 0 0 0 0 0 0 0 (171) SER180 7 0 0 0 0 0 0 0 (174) ARG183 4 0 0 0 0 0 0 0 (179) SER188 2 0 0 0 0 0 0 0 (181) ASP190 15 0 0 0 0 0 0 0 (183) ASP192 8 0 0 0 0 0 0 0 (225) LYS234 0 0 1 4 0 0 0 0 (262) TYR271 6 8 0 0 0 0 0 0 (267) ASP276 11 0 0 0 0 0 0 0 (270) ASN279 4 0 0 0 0 0 0 0 (274) ARG283 9 1 0 0 0 0 0 0 prot.sequence tlnggitdmlvelanfeknvsqaihkynayrkaasviakyphkiksgaeakklpgvgtkiaekideflatgklrklekirqddtsssinfltrvtgigpsaarklvdegiktledlrknedklnhhqriglkyfedfekripreemlqmqdivlnevkkldpeyiatvcgsfrrgaessgdmdvllthpnftsesskqpkllhrvveqlqkvrfitdtlskgetKfmgvcqlpsendeneyphrridirlipkdqyycgvlYftgsdifNknmRahalekgftineytirplgvtgvageplpvdseqdifdyiqwryrepkdrs >1hut_H:Trypsin-like_serine_proteases; title=THE STRUCTURE OF ALPHA-THROMBIN INHIBITED BY A 15-MER SINGLE-STRANDED DNA APTAMER organism=HOMO SAPIENS DNA sequence DG(D401) DG(D402) DT(D403) DT(D404) DG(D405) DG(D406) DT(D407) DG(D408) DT(D409) DG(D410) DG(D411) DT(D412) DT(D413) DG(D414) DG(D415) chainH ( 9) ILE24 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 ( 66) HIS71 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 ( 70) ARG75 13 0 0 0 0 14 0 17 0 0 0 0 0 0 0 ( 71) TYR76 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 ( 72) GLU77 0 0 0 0 0 0 20 0 0 0 0 0 0 0 0 ( 73) ARG77A 0 0 0 0 0 0 0 3 0 15 0 0 0 0 0 ( 75) ILE79 0 0 0 0 0 0 18 0 3 0 0 0 0 0 0 (114) TYR117 0 0 0 0 0 0 5 0 5 0 0 0 0 0 0 prot.sequence ivegsdaeIgmspwqvmlfrkspqellcgaslisdrwvltaahcllyppwdknftendllvrigkHsrtRYeRnIekismlekiyihprynwrenldrdialmklkkpvafsdYihpvclpdretaasllqagykgrvtgwgnlketwgqpsvlqvvnlpiverpvckdstriritdnmfcagykpdegkrgdacegdsggpfvmkspfnnrwyqmgivswgegcdrdgkygfythvfrlkkwiqkvidqfge >1hut_HL:Trypsin-like_serine_proteases; title=THE STRUCTURE OF ALPHA-THROMBIN INHIBITED BY A 15-MER SINGLE-STRANDED DNA APTAMER organism=HOMO SAPIENS DNA sequence DG(D401) DG(D402) DT(D403) DT(D404) DG(D405) DG(D406) DT(D407) DG(D408) DT(D409) DG(D410) DG(D411) DT(D412) DT(D413) DG(D414) DG(D415) chainL chainH ( 9) ILE24 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 ( 66) HIS71 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 ( 70) ARG75 13 0 0 0 0 14 0 17 0 0 0 0 0 0 0 ( 71) TYR76 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 ( 72) GLU77 0 0 0 0 0 0 20 0 0 0 0 0 0 0 0 ( 73) ARG77A 0 0 0 0 0 0 0 3 0 15 0 0 0 0 0 ( 75) ILE79 0 0 0 0 0 0 18 0 3 0 0 0 0 0 0 (114) TYR117 0 0 0 0 0 0 5 0 5 0 0 0 0 0 0 prot.sequence ivegsdaeIgmspwqvmlfrkspqellcgaslisdrwvltaahcllyppwdknftendllvrigkHsrtRYeRnIekismlekiyihprynwrenldrdialmklkkpvafsdYihpvclpdretaasllqagykgrvtgwgnlketwgqpsvlqvvnlpiverpvckdstriritdnmfcagykpdegkrgdacegdsggpfvmkspfnnrwyqmgivswgegcdrdgkygfythvfrlkkwiqkvidqfge/tfgsgeadCglrplfekksledkterellesyidgr >1huz_A:Nucleotidyltransferase;DNA_polymerase_beta,_N-terminal_domain-like;PsbU/PolX_domain-like; title=CRYSTAL STRUCTURE OF DNA POLYMERASE COMPLEXED WITH DNA AND CR-PCP organism=Rattus norvegicus DNA sequence DA(T4):DT(P8) DG(T5):DC(P7) DG(T6):DC(P6) DC(T7):DG(P5) DG(T8):DC(P4) DT(T9):DA(P3) DC(T10):DG(P2) DG(T11):DC(P1) chainA (225) LYS234 0 0 2 5 0 0 0 0 (262) TYR271 4 8 0 0 0 0 0 0 (267) ASP276 12 0 0 0 0 0 0 0 (270) ASN279 3 0 0 0 0 0 0 0 (274) ARG283 10 3 0 0 0 0 0 0 prot.sequence tlnggitdmlvelanfeknvsqaihkynayrkaasviakyphkiksgaeakklpgvgtkiaekideflatgklrklekirqddtsssinfltrvtgigpsaarklvdegiktledlrknedklnhhqriglkyfedfekripreemlqmqdivlnevkkldpeyiatvcgsfrrgaessgdmdvllthpnftsesskqpkllhrvveqlqkvrfitdtlskgetKfmgvcqlpsendeneyphrridirlipkdqyycgvlYftgsDifNknmRahalekgftineytirplgvtgvageplpvdseqdifdyiqwryrepkdrs >1hw2_A:GntR_ligand-binding_domain-like;"Winged_helix"_DNA-binding_domain; title=FADR-DNA COMPLEX: TRANSCRIPTIONAL CONTROL OF FATTY ACID METABOLISM IN ECHERICHIA COLI organism=Escherichia coli DNA sequence DC(E2):DG(D20) DA(E3):DT(D19) DT(E4):DA(D18) DC(E5):DG(D17) DT(E6):DA(D16) DG(E7):DC(D15) DG(E8):DC(D14) DT(E9):DA(D13) DC(E10):DG(D12) DG(E11):DC(D11) DG(E12):DC(D10) DA(E13):DT(D9) DC(E14):DG(D8) DC(E15):DG(D7) DA(E16):DT(D6) DG(E17):DC(D5) DA(E18):DT(D4) DT(E19):DA(D3) chainA ( 29) ARG35 0 0 0 0 2 10 2 0 0 0 0 0 0 0 0 0 0 0 ( 38) THR44 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 ( 39) ARG45 0 0 0 0 0 3 10 2 0 0 0 0 0 0 0 0 0 0 ( 40) THR46 0 0 0 0 0 0 0 0 0 5 6 0 0 0 0 0 0 0 ( 43) ARG49 0 0 0 0 0 0 2 6 0 0 0 0 0 0 0 0 0 0 ( 44) GLU50 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 ( 59) HIS65 0 0 0 5 6 11 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence spagfaeeyiiesiwnnrfppgtilpaeRelseligvTRTtlREvlqrlardgwltiqHgkptkvnnfwetsglniletlarldhesvpqlidnllsvrtnistifirtafrqhpdkaqevlatanevadhadafaeldynifrglafasgnpiyglilngmkglytrigrhyfanpearslalgfyhklsalcsegahdqvyetvrryghesgeiwhrmqk >1hw2_AB: title=FADR-DNA COMPLEX: TRANSCRIPTIONAL CONTROL OF FATTY ACID METABOLISM IN ECHERICHIA COLI organism=Escherichia coli DNA sequence DA(D3):DT(E19) DT(D4):DA(E18) DC(D5):DG(E17) DT(D6):DA(E16) DG(D7):DC(E15) DG(D8):DC(E14) DT(D9):DA(E13) DC(D10):DG(E12) DC(D11):DG(E11) DG(D12):DC(E10) DA(D13):DT(E9) DC(D14):DG(E8) DC(D15):DG(E7) DA(D16):DT(E6) DG(D17):DC(E5) DA(D18):DT(E4) DT(D19):DA(E3) DG(D20):DC(E2) chainA ( 29) ARG35 0 0 0 0 0 0 0 0 0 0 0 2 10 2 0 0 0 0 ( 38) THR44 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 ( 39) ARG45 0 0 0 0 0 0 0 0 0 0 2 10 3 0 0 0 0 0 ( 40) THR46 0 0 0 0 0 0 0 6 5 0 0 0 0 0 0 0 0 0 ( 43) ARG49 0 0 0 0 0 0 0 0 0 0 6 2 0 0 0 0 0 0 ( 44) GLU50 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 ( 59) HIS65 0 0 0 0 0 0 0 0 0 0 0 0 11 6 5 0 0 0 chainB ( 29) ARG35 0 0 0 7 13 4 0 0 0 0 0 0 0 0 0 0 0 0 ( 38) THR44 0 0 0 0 0 0 0 0 4 2 0 0 0 0 0 0 0 0 ( 39) ARG45 0 0 0 0 6 10 1 0 0 0 0 0 0 0 0 0 0 0 ( 40) THR46 0 0 0 0 0 0 0 0 6 8 0 0 0 0 0 0 0 0 ( 43) ARG49 0 0 0 0 0 3 5 0 0 0 0 0 0 0 0 0 0 0 ( 44) GLU50 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 ( 59) HIS65 0 0 2 3 8 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence spagfaeeyiiesiwnnrfppgtilpaeRelseligvTRTtlREvlqrlardgwltiqHgkptkvnnfwetsglniletlarldhesvpqlidnllsvrtnistifirtafrqhpdkaqevlatanevadhadafaeldynifrglafasgnpiyglilngmkglytrigrhyfanpearslalgfyhklsalcsegahdqvyetvrryghesgeiwhrmqk/spagfaeeyiiesiwnnrfppgtilpaeRelseligvTRTtlREvlqrlardgwltiqHgkptkvnnfwetsglniletlarldhesvpqlidnllsvrtnistifirtafrqhpdkaqevlatanevadhadafaeldynifrglafasgnpiyglilngmkglytrigrhyfanpearslalgfyhklsalcsegahdqvyetvrryghesgeiwhrmqk >1hys_AB:DNA/RNA_polymerases;Ribonuclease_H-like; title=CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH A POLYPURINE TRACT RNA:DNA organism=HUMAN IMMUNODEFICIENCY VIRUS 1 DNA sequence DC(F878) DT(F879) DT(F880) DT(F881) DT(F882) DC(F883) DT(F884) DT(F885) DT(F886) DT(F887) DA(F888) DA(F889) DA(F890) DA(F891) DA(F892) DG(F893) DT(F894) DG(F895) DG(F896) DC(F897) DT(F898) DG(F899) chainA (115) TYR115 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 (183) TYR183 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 (258) GLN258 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 (266) TRP266 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 (448) ARG448 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (475) GLN475 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB prot.sequence pispietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaikkkdstkwrklvdfrelnkrtqdfwevqlgiphpaglkkkksvtvldvgdaYfsvpldedfrkytaftipsinnetpgiryqynvlpqgwkgspaifqssmtkilepfkkqnpdiviyqYmddlyvgsdleigqhrtkieelrqhllrwglttpdkkhqkeppflwmgyelhpdkwtvqpivlpekdswtvndiQklvgklnWasqiypgikvrqlskllrgtkalteviplteeaelelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyarmrgahtndvkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwipewefvntpplvklwyqlekepivgaetfyvdgaanRetklgkagyvtnkgrqkvvpltnttnQktelqaiylalqdsglevnivtdsqyalgiiqaqpdkseselvnqiieqlikkekvylawvpahkgiggneqvdklvs/pispietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaikkkdstkwrklvdfrelnkrtqdfwevqlgiphpaglkkkksvtvldvgdaYfsvpldedfrkytaftipsinnetpgiryqynvlpqgwkgspaifqssmtkilepfkkqnpdiviyqYmddlyvgsdleigqhrtkieelrqhllrwglttpdkkhqkeppflwmgyelhpdkwtvqpivlpekdswtvndiQklvgklnWasqiypgikvrqlskllrgtkalteviplteeaelelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyarmrgahtndvkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwipewefvntpplvkl >1i6h_A:beta_and_beta-prime_subunits_of_DNA_dependent_RNA-polymerase; title=RNA POLYMERASE II ELONGATION COMPLEX organism=SACCHAROMYCES CEREVISIAE DNA sequence DA(D1) DA(D2) DA(D3) DT(D4) DG(D5) DC(D6) DC(D7) DT(D8) DG(D9) DG(D10) DT(D11) DC(D12) DT(D13) chainA (414) PRO448 0 0 0 0 2 0 0 0 0 0 0 0 0 (797) THR831 0 0 0 6 0 0 0 0 0 0 0 0 0 (798) ALA832 0 0 0 3 0 0 0 0 0 0 0 0 0 (1322) ARG1386 9 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence vgqqyssaplrtvkevqfglfspeevraisvakirfpetmdetqtrakigglndprlgsidrnlkcqtcqegmnecpghfghidlakpvfhvgfiakikkvcecvcmhcgkllldehnelmrqalaikdskkrfaaiwtlcktkmvcetdvpslvsrggcgntqptirkdglklvgswklrvlsteeilnifkhisvkdftslgfnevfsrpewmiltclpvppppvrpseddltfkladilkanisletlehngaphhaieeaesllqfhvatymdndiagqpqapvksirarlkgkegrirgnlmgkrvdfsartvisgdpnleldqvgvpksiaktltypevvtpynidrltqlvrngpnehpgakyvirdsgdridlryskragdiqlqygwkverhimdndpvlfnrqPslhkmsmmahrvkvipystfrlnlsvtspynadfdgdemnlhvpqseetraelsqlcavplqivspqsnkpcmgivqdtlcgirkltlrdtfieldqvlnmlywvpdwdgviptpaiikpkplwsgkqilsvaipngihlqrfdegttllspkdngmliidgqiifgvvekktvgssngglihvvtrekgpqvcaklfgniqkvvnfwllhngfstgigdtiadgptmreitetiaeakkkvldvtkeaqanlltakhgmtlresfednvvrflneardkagrlaevnlkdlnnvkqmvmagskgsfiniaqmsacvgqqsvegkriafgfvdrtlphfskddyspeskgfvensylrgltpqefffhamggreglidtavkTAetgyiqrrlvkaledimvhydnttrnslgnviqfiygedgmdaahiekqsldtiggsdaafekryrvdllntdhtldpsllesgseilgdlklqvlldeeykqlvkdrkflrevfvdgeanwplpvnirriiqnaqqtfhidhtkpsdltikdivlgvkdlqenllvlrgkneiiqnaqrdavtlfccllrsrlatrrvlqeyrltkqafdwvlsnieaqflrsvvhpgemvgvlaaqsigepatqmtlkkvtsgvprlkeilnvaknmktpsltvylepghaadqeqaklirsaiehttlksvtiaseiyydpdprstvipedeeiiqlhfslqqspwllrleldraamndkdltmgqvgerikqtfkndlfviwsedndekliircrvvaeedhmlkkientmlenitlrgveniervvmmkydrkvpsptgeyvkepewvletdgvnlsevmtvpgidptriytnsfidimevlgieagraalykevynviasdgsyvnyrhmallvdvmttqggltsvtRhgfnrsntgalmrcsfeetveilfeagasaelddcrgvsenvilgqmapigtgafdvmi >1i6h_AB: title=RNA POLYMERASE II ELONGATION COMPLEX organism=SACCHAROMYCES CEREVISIAE DNA sequence DA(D1) DA(D2) DA(D3) DT(D4) DG(D5) DC(D6) DC(D7) DT(D8) DG(D9) DG(D10) DT(D11) DC(D12) DT(D13) chainA (414) PRO448 0 0 0 0 2 0 0 0 0 0 0 0 0 (797) THR831 0 0 0 6 0 0 0 0 0 0 0 0 0 (798) ALA832 0 0 0 3 0 0 0 0 0 0 0 0 0 (1322) ARG1386 9 0 0 0 0 0 0 0 0 0 0 0 0 chainB (970) HIS1097 0 0 0 0 0 0 0 1 0 0 0 0 0 prot.sequence vgqqyssaplrtvkevqfglfspeevraisvakirfpetmdetqtrakigglndprlgsidrnlkcqtcqegmnecpghfghidlakpvfhvgfiakikkvcecvcmhcgkllldehnelmrqalaikdskkrfaaiwtlcktkmvcetdvpslvsrggcgntqptirkdglklvgswklrvlsteeilnifkhisvkdftslgfnevfsrpewmiltclpvppppvrpseddltfkladilkanisletlehngaphhaieeaesllqfhvatymdndiagqpqapvksirarlkgkegrirgnlmgkrvdfsartvisgdpnleldqvgvpksiaktltypevvtpynidrltqlvrngpnehpgakyvirdsgdridlryskragdiqlqygwkverhimdndpvlfnrqPslhkmsmmahrvkvipystfrlnlsvtspynadfdgdemnlhvpqseetraelsqlcavplqivspqsnkpcmgivqdtlcgirkltlrdtfieldqvlnmlywvpdwdgviptpaiikpkplwsgkqilsvaipngihlqrfdegttllspkdngmliidgqiifgvvekktvgssngglihvvtrekgpqvcaklfgniqkvvnfwllhngfstgigdtiadgptmreitetiaeakkkvldvtkeaqanlltakhgmtlresfednvvrflneardkagrlaevnlkdlnnvkqmvmagskgsfiniaqmsacvgqqsvegkriafgfvdrtlphfskddyspeskgfvensylrgltpqefffhamggreglidtavkTAetgyiqrrlvkaledimvhydnttrnslgnviqfiygedgmdaahiekqsldtiggsdaafekryrvdllntdhtldpsllesgseilgdlklqvlldeeykqlvkdrkflrevfvdgeanwplpvnirriiqnaqqtfhidhtkpsdltikdivlgvkdlqenllvlrgkneiiqnaqrdavtlfccllrsrlatrrvlqeyrltkqafdwvlsnieaqflrsvvhpgemvgvlaaqsigepatqmtlkkvtsgvprlkeilnvaknmktpsltvylepghaadqeqaklirsaiehttlksvtiaseiyydpdprstvipedeeiiqlhfslqqspwllrleldraamndkdltmgqvgerikqtfkndlfviwsedndekliircrvvaeedhmlkkientmlenitlrgveniervvmmkydrkvpsptgeyvkepewvletdgvnlsevmtvpgidptriytnsfidimevlgieagraalykevynviasdgsyvnyrhmallvdvmttqggltsvtRhgfnrsntgalmrcsfeetveilfeagasaelddcrgvsenvilgqmapigtgafdvmi/desapitaedswavisaffrekglvsqqldsfnqfvdytlqdiicedstliisfgkiyvtkpmvnesdgvthalypqearlrnltyssglfvdvkkkvfigrlpimlrskncylseatesdlyklkecpfdmggyfiingsekvliaqersagnivqvfkkaapspishvaeirsalekgsrfistlqvklygregssartikatlpyikqdipiviifralgiipdgeilehicydvndwqmlemlkpcvedgfviqdretaldfigkekriqyakdilqkeflphitqlegfesrkafflgyminrlllcaldrkdqddrdhfgkkrldlagpllaqlfktlfkkltkdifrymqrtvelainaktitsglkyalatgnwgagvsqvlnrytysstlshlrrtntpiakprqlhnthwglvcpaetpegqacglvknlslmscisvgtdpmpiitflsewgmepledyvphqspdatrvfvngvwhgvhrnparlmetlrtlrrkgdinpevsmirdirekelkiftdagrvyrplfiveddeslghkelkvrkghiaklmateyqdeytwssllneglveyidaeeeesiliamqpedlepaeadvdpakrirvshhattfthceihpsmilgvaasiipfpdhnqsprntyqsamgkqamgvfltnynvrmdtmanilyypqkplgttrameylkfrelpagqnaivaiacysgynqedsmimnqssidrglfrslffrsymdqekkygmsitetfekpqrtntlrmkhgtydkldddgliapgvrvsgedviigkttpisskrdastplrstengivdqvlvttnqdglkfvkvrvrttkipqigdkfasrhgqkgtigityrredmpftaegivpdliinphaipsrmtvahliecllskvaalsgnegdaspftditvegiskllrehgyqsrgfevmynghtgkklmaqiffgptyyqrlrHmvddkiharargpmqvltrqpvegrsrdgglrfgemerdcmiahgaasflkerlmeasdafrvhicgicglmtviaklnhnqfeckgcdnkidiyqihipyaakllfqelmamnitprlytdrsrdf >1i6j_A:DNA/RNA_polymerases; title=CRYSTAL STRUCTURE OF A PSEUDO-16-MER DNA WITH STACKED GUANINES AND TWO G-A MISPAIRS COMPLEXED WITH THE N-TERMINAL FRAGMENT OF MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE organism=Moloney murine leukemia virus DNA sequence DG(B1):DC(C16) DT(B2):DA(C15) DC(B3):DG(C14) DG(B4):DC(C13) DT(B5):DA(C12) DC(B6):DG(C11) chainA ( 77) LEU99 22 0 0 0 0 0 ( 90) VAL112 2 0 0 0 0 0 ( 92) ASP114 8 0 0 0 0 0 ( 94) ARG116 8 12 3 0 0 0 prot.sequence mtwlsdfpqawaetggmglavrqapliiplkatstpvsikqypmsqearlgikphiqrlldqgilvpcqspwntplLpvkkpgtndyrpVqDlRevnkrvedihptvpnpynllsglppshqwytvldlkdaffclrlhptsqplfafewrdpemgisgqltwtrlpqgfknsptlfdealhrdladfriqhpdlillqyvddlllaatseldcqqgtrallqtlgnlgyrasakkaqicqkqvkylgyllkegqr >1ic8_A:lambda_repressor-like_DNA-binding_domains;Homeodomain-like; title=HEPATOCYTE NUCLEAR FACTOR 1A BOUND TO DNA : MODY3 GENE PRODUCT organism=Homo sapiens DNA sequence DC(E301):DG(F421) DT(E302):DA(F420) DT(E303):DA(F419) DG(E304):DC(F418) DG(E305):DC(F417) DT(E306):DA(F416) DT(E307):DA(F415) DA(E308):DT(F414) DA(E309):DT(F413) DT(E310):DA(F412) DA(E311):DT(F411) DA(E312):DT(F410) DT(E313):DA(F409) DT(E314):DA(F408) DC(E315):DG(F407) DA(E316):DT(F406) DC(E317):DG(F405) DC(E318):DG(F404) DA(E319):DT(F403) DG(E320):DC(F402) chainA ( 54) ASN140 0 0 0 0 0 0 0 0 0 0 0 0 0 1 7 0 0 0 0 0 ( 55) GLN141 0 0 0 0 0 0 0 0 0 0 6 10 2 0 0 0 0 0 0 0 ( 56) SER142 0 0 0 0 0 0 0 0 0 0 0 0 5 7 3 0 0 0 0 0 ( 57) HIS143 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 0 ( 59) SER145 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 ( 60) GLN146 0 0 0 0 0 0 0 0 0 0 0 0 3 5 4 0 0 0 0 0 ( 67) PRO153 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 (159) TYR265 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (160) ASN266 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (164) ASN270 0 0 0 0 0 10 4 0 0 0 0 0 0 0 0 0 0 0 0 0 (167) LYS273 0 0 10 14 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence kelenlspeeaahqkavvetllqedpwrvakmvksylqqhnipqrevvdttglNQSHlSQhlnkgtPmktqkraalytwyvrkqrevaqqftharnrfkwgpasqqilfqayerqknpskeeretlveecnraeciqrgvspsqaqglgsnlvtevrvYNwfaNrrKeea >1ic8_AB:lambda_repressor-like_DNA-binding_domains;Homeodomain-like; title=HEPATOCYTE NUCLEAR FACTOR 1A BOUND TO DNA : MODY3 GENE PRODUCT organism=Homo sapiens DNA sequence DC(E301):DG(F421) DT(E302):DA(F420) DT(E303):DA(F419) DG(E304):DC(F418) DG(E305):DC(F417) DT(E306):DA(F416) DT(E307):DA(F415) DA(E308):DT(F414) DA(E309):DT(F413) DT(E310):DA(F412) DA(E311):DT(F411) DA(E312):DT(F410) DT(E313):DA(F409) DT(E314):DA(F408) DC(E315):DG(F407) DA(E316):DT(F406) DC(E317):DG(F405) DC(E318):DG(F404) DA(E319):DT(F403) DG(E320):DC(F402) chainA ( 54) ASN140 0 0 0 0 0 0 0 0 0 0 0 0 0 1 7 0 0 0 0 0 ( 55) GLN141 0 0 0 0 0 0 0 0 0 0 6 10 2 0 0 0 0 0 0 0 ( 56) SER142 0 0 0 0 0 0 0 0 0 0 0 0 5 7 3 0 0 0 0 0 ( 57) HIS143 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 0 ( 59) SER145 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 ( 60) GLN146 0 0 0 0 0 0 0 0 0 0 0 0 3 5 4 0 0 0 0 0 ( 67) PRO153 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 (159) TYR265 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (160) ASN266 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (164) ASN270 0 0 0 0 0 10 4 0 0 0 0 0 0 0 0 0 0 0 0 0 (167) LYS273 0 0 10 14 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 56) ASN140 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 57) GLN141 0 0 0 0 0 0 0 0 2 8 10 0 0 0 0 0 0 0 0 0 ( 58) SER142 0 0 0 0 0 0 8 6 8 0 0 0 0 0 0 0 0 0 0 0 ( 59) HIS143 0 0 0 0 0 4 3 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 61) SER145 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 ( 62) GLN146 0 0 0 0 0 0 3 7 4 0 0 0 0 0 0 0 0 0 0 0 ( 68) THR152 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 69) PRO153 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 98) ARG203 0 0 0 0 0 0 0 0 0 0 0 0 0 8 5 0 0 0 0 0 (160) TYR265 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 (161) ASN266 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 (164) ALA269 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 (165) ASN270 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 10 0 0 0 0 (168) LYS273 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 9 8 0 0 prot.sequence kelenlspeeaahqkavvetllqedpwrvakmvksylqqhnipqrevvdttglNQSHlSQhlnkgtPmktqkraalytwyvrkqrevaqqftharnrfkwgpasqqilfqayerqknpskeeretlveecnraeciqrgvspsqaqglgsnlvtevrvYNwfaNrrKeea/ilkelenlspeeaahqkavvetllqedpwrvakmvksylqqhnipqrevvdttglNQSHlSQhlnkgTPmktqkraalytwyvrkqrevaqqfthrnRfkwgpasqqilfqayerqknpskeeretlveecnraeciqrgvspsqaqglgsnlvtevrvYNwfANrrKeeafr >1id3_ABCDEFGH:Histone-fold;lambda_repressor-like_DNA-binding_domains;p53-like_transcription_factors;Nucleic_acid-binding_proteins;P-loop_containing_nucleoside_triphosphate_hydrolases; title=CRYSTAL STRUCTURE OF THE YEAST NUCLEOSOME CORE PARTICLE REVEALS FUNDAMENTAL DIFFERENCES IN INTER-NUCLEOSOME INTERACTIONS organism=SACCHAROMYCES CEREVISIAE DNA sequence DA(J147):DT(I146) DT(J148):DA(I145) DC(J149):DG(I144) DA(J150):DT(I143) DA(J151):DT(I142) DT(J152):DA(I141) DA(J153):DT(I140) DT(J154):DA(I139) DC(J155):DG(I138) DC(J156):DG(I137) DA(J157):DT(I136) DC(J158):DG(I135) DC(J159):DG(I134) DT(J160):DA(I133) DG(J161):DC(I132) DC(J162):DG(I131) DA(J163):DT(I130) DG(J164):DC(I129) DA(J165):DT(I128) DT(J166):DA(I127) DC(J168):DA(I126) DT(J169):DG(I125) DA(J170):DT(I123) DC(J171):DG(I122) DC(J172):DG(I121) DA(J173):DT(I120) DA(J174):DT(I119) DA(J175):DT(I118) DA(J176):DT(I117) DG(J177):DC(I116) DT(J178):DA(I115) DG(J179):DC(I114) DT(J180):DA(I113) DA(J181):DT(I112) DT(J182):DA(I111) DT(J183):DA(I110) DT(J184):DA(I109) DG(J185):DC(I108) DG(J186):DC(I107) DA(J187):DT(I106) DA(J188):DT(I105) DA(J189):DT(I104) DC(J190):DG(I103) DT(J191):DA(I102) DG(J192):DC(I101) DC(J193):DG(I100) DT(J194):DA(I99) DC(J195):DG(I98) DC(J196):DG(I97) DA(J197):DT(I96) DT(J198):DA(I95) DC(J199):DG(I94) DA(J200):DT(I93) DA(J201):DT(I92) DA(J202):DT(I91) DA(J203):DT(I90) DG(J204):DC(I89) DG(J205):DC(I88) DC(J206):DG(I87) DA(J207):DT(I86) DT(J208):DA(I85) DG(J209):DC(I84) DT(J210):DA(I83) DT(J211):DA(I82) DC(J212):DG(I81) DA(J213):DT(I80) DG(J214):DC(I79) DC(J215):DG(I78) DG(J216):DC(I77) DG(J217):DC(I76) DA(J218):DT(I75) DA(J219):DT(I74) DT(J220):DA(I73) DT(J221):DA(I72) DC(J222):DG(I71) DC(J223):DG(I70) DG(J224):DC(I69) DC(J225):DG(I68) DT(J226):DA(I67) DG(J227):DC(I66) DA(J228):DT(I65) DA(J229):DT(I64) DC(J230):DG(I63) DA(J231):DT(I62) DT(J232):DA(I61) DG(J233):DC(I60) DC(J234):DG(I59) DC(J235):DG(I58) DT(J236):DA(I57) DT(J238):DA(I55) DT(J239):DA(I54) DG(J240):DC(I53) DA(J241):DT(I52) DT(J242):DA(I51) DG(J243):DC(I50) DG(J244):DC(I49) DA(J245):DT(I48) DG(J246):DC(I47) DC(J247):DG(I46) DA(J248):DT(I45) DG(J249):DC(I44) DT(J250):DA(I43) DT(J251):DA(I42) DT(J252):DA(I41) DC(J253):DG(I40) DC(J254):DG(I39) DA(J255):DT(I38) DA(J256):DT(I37) DA(J257):DT(I36) DT(J258):DA(I35) DA(J259):DT(I34) DC(J260):DG(I33) DA(J261):DT(I32) DC(J262):DG(I31) DT(J263):DA(I30) DT(J264):DA(I29) DT(J266):DA(I27) DG(J267):DC(I26) DG(J268):DC(I25) DT(J269):DA(I24) DA(J270):DT(I23) DG(J271):DC(I22) DA(J272):DT(I21) DT(J274):DT(I20) DC(J275):DG(I18) DT(J276):DA(I17) DG(J277):DC(I16) DC(J278):DG(I15) DA(J279):DT(I14) DG(J280):DC(I13) DG(J281):DC(I12) DT(J282):DA(I11) DG(J283):DC(I10) DG(J284):DC(I9) DA(J285):DT(I8) DT(J286):DA(I7) DA(J287):DT(I6) DT(J288):DA(I5) DT(J289):DA(I4) DG(J290):DC(I3) DA(J291):DT(I2) DT(J292):DA(I1) chainA ( 3) ARG40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) LEU65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) ARG83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 22) ARG45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainC ( 28) ARG43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainD ( 1) ARG36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 2 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainE ( 3) ARG40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 4) TYR41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 46) ARG83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainF ( 15) PRO32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainG chainH prot.sequence phRykpgtvalreirrfqkstellirkLpfqrlvreiaqdfktdlRfqssaigalqesveaylvslfedtnlaaihakrvtiqkkeiklarrlrger/dniqgitkpairrlarrggvkRisgliyeevravlksflesvirdsvtytehakrktvtsldvvyalkrqgrtlygfgg/qsrsakagltfpvgrvhrllrrgnyaqRigsgapvyltavleylaaeilelagnaardnkktriiprhlqlairnddelnkllgnvtiaqggvlpnihqnllpkksakat/Rketyssyiykvlkqthpdtgisqksmsilnsfvndiferiateasklaaynkkstisareiqtavrlilpgelakhavsegtravtkyssst/phRYkpgtvalreirrfqkstellirklpfqrlvreiaqdfktdlRfqssaigalqesveaylvslfedtnlaaihakrvtiqkkeiklarrlrger/hrkilrdniqgitkPairrlarrggvkrisgliyeevravlksflesvirdsvtytehakrktvtsldvvyalkrqgrtlygfgg/kasqsrsakagltfPvgrvhrllrrgnyaqrigsgapvyltavleylaaeilelagnaardnkktriiprhlqlairnddelnkllgnvtiaqggvlpnihqnllpkk/vrketyssyiykvlKqthpdtgisqksmsilnsfvndiferiateasklaaynkkstisareiqtavrlilpgelakhavsegtravtkyssstqa >1if1_AB: title=INTERFERON REGULATORY FACTOR 1 (IRF-1) COMPLEX WITH DNA organism=Mus musculus DNA sequence DG(D500):DC(D525) DA(D501):DT(D524) DG(D502):DC(D523) DA(D503):DT(D522) DA(D504):DT(D521) DG(D505):DC(D520) DT(D506):DA(D519) DG(D507):DC(D518) DA(D508):DT(D517) DA(D509):DT(D516) DA(D510):DT(D515) DG(D511):DC(D514) DT(D512):DA(D513) DA(C213):DT(C212) DC(C214):DG(C211) DT(C215):DA(C210) DT(C216):DA(C209) DT(C217):DA(C208) DC(C218):DG(C207) DA(C219):DT(C206) DC(C220):DG(C205) DT(C221):DA(C204) DT(C222):DA(C203) DC(C223):DG(C202) DT(C224):DA(C201) DC(C225):DG(C200) chainA ( 74) ASN80 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 ( 76) ARG82 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 9 0 0 0 0 0 0 ( 77) CYS83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 5 2 0 0 0 0 0 0 0 0 ( 81) SER87 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 2 0 0 0 0 0 0 0 0 0 0 chainB ( 33) HIS40 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 73) ASN80 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 75) ARG82 0 0 0 0 0 0 10 13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 76) CYS83 0 0 0 0 0 0 0 1 2 5 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 79) ASN86 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 80) SER87 0 0 0 0 0 0 0 0 0 0 2 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence rmrpwlemqinsnqipgliwinkeemifqipwkhaakhgwdinkdaclfrswaihtgrykagekepdpktwkaNfRCamnSlpdieevkdqsrnkgssavrvyrm/mrpwlemqinsnqipgliwinkeemifqipwkHaakhgwdinkdaclfrswaihtgrykagekepdpktwkaNfRCamNSlpdieevkdqsrnkgssavrvyrm >1ig4_A:DNA-binding_domain; title=SOLUTION STRUCTURE OF THE METHYL-CPG-BINDING DOMAIN OF HUMAN MBD1 IN COMPLEX WITH METHYLATED DNA organism=HOMO SAPIENS DNA sequence DG(C113):DC(B112) DT(C114):DA(B111) DA(C115):DT(B110) DT(C116):DA(B109) DC(C117):DG(B108) 5CM(C118):DG(B107) DG(C119):5CM(B106) DG(C120):DC(B105) DA(C121):DT(B104) DT(C122):DA(B103) DA(C123):DT(B102) DC(C124):DG(B101) chainA ( 20) VAL20 0 0 0 0 0 0 1 0 0 0 0 0 ( 22) ARG22 0 0 0 0 0 7 14 0 0 0 0 0 ( 27) THR27 0 0 0 0 0 6 1 0 0 0 0 0 ( 32) ASP32 0 0 0 0 0 1 0 0 0 0 0 0 ( 34) TYR34 0 0 0 0 0 2 7 0 0 0 0 0 ( 44) ARG44 0 0 0 0 0 4 6 8 0 0 0 0 ( 45) SER45 0 0 0 0 0 1 0 0 0 0 0 0 prot.sequence maedwldcpalgpgwkrrevfRksgaTcgrsDtYyqsptgdriRskveltrylgpacdltlfdfkqgilcypapk >1ig9_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=STRUCTURE OF THE REPLICATING COMPLEX OF A POL ALPHA FAMILY DNA POLYMERASE organism=Enterobacteria phage RB69 DNA sequence DG(P102):DC(T17) DC(P103):DG(T16) DG(P104):DC(T15) DG(P105):DC(T14) DA(P106):DT(T13) DC(P107):DG(T12) DT(P108):DA(T11) DG(P109):DC(T10) DC(P110):DG(T9) DT(P111):DA(T8) DT(P112):DA(T7) DA(P113):DT(T6) DC(P114):DG(T5) DOC(P115):DG(T4) TTP(A1005):DA(T3) chainA (361) PRO361 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 (411) ASP411 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 (413) THR413 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 (414) SER414 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 (415) LEU415 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 (482) ARG482 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 (486) LYS486 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 (560) LYS560 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 (561) LEU561 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 (564) ASN564 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 (565) SER565 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 (567) TYR567 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 (623) ASP623 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 (706) LYS706 0 0 0 0 0 0 0 0 0 0 0 2 6 0 0 (734) LYS734 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 (800) LYS800 0 0 0 0 0 3 4 2 0 0 0 0 0 0 0 prot.sequence mkefyltveqigdsiferyidsngrertreveykpslfahcpesqatkyfdiygkpctrklfanmrdasqwikrmediglealgmddfklaylsdtynyeikydhtkirvanfdievtspdgfpepsqakhpidaithydsiddrfyvfdllnspygnveewsieiaaklqeqggdevpseiidkiiympfdnekellmeylnfwqqktpviltgwnvesfaipyvynriknifgestakrlsphrktrvkvienmygsreiitlfgisvldyidlykkfsftnqpsysldyisefelnvgklkydgpisklresnhqryisyniiavyrvlqidakrqfinlsldmgyyakiqiqsvfsPiktwdaiifnslkeqnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiagtfkvaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlaaqrngeiikealhnpnlsvdepldvdyrfdfsdeikekikklsakslnemlfraqrtevagmtaqinrkLlinSlYgalgnvwfryydlrnataittfgqmalqwierkvneylnevcgtegeafvlygDTdsiyvsadkiidkvgeskfrdtnhwvdfldkfarermepaidrgfremceymnnkqhlmfmdreaiagpplgskgiggfwtgkKryalnvwdmegtryaepklkimgletqKsstpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisiasvssanniakydvggfpgpKcpfhirgiltynraikgnidapqvvegekvyvlplregnpfgdkciawpsgteitdlikddvlhwmdytvllektfikplegftsaakldyekkaslfdmf >1ijw_C:Homeodomain-like; title=TESTING THE WATER-MEDIATED HIN RECOMBINASE DNA RECOGNITION BY SYSTEMATIC MUTATIONS. organism=? DNA sequence DG(A3):DC(B29) DT(A4):DA(B28) DT(A5):DA(B27) DT(A6):DA(B26) DT(A7):DA(B25) DT(A8):DA(B24) DG(A9):DC(B23) DA(A10):DT(B22) DT(A11):DA(B21) DA(A12):DT(B20) DA(A13):DT(B19) chainC ( 2) ARG140 0 0 5 17 5 2 0 0 0 0 0 ( 36) SER174 0 0 0 0 0 0 6 10 4 0 0 ( 37) THR175 0 0 0 0 0 0 2 0 0 0 0 ( 39) TYR177 0 0 0 0 0 0 0 0 0 5 6 ( 40) ARG178 0 0 0 0 0 11 9 0 0 0 0 prot.sequence gRprainkheqeqisrllekghprqqlaiifgigvSTlYRyfpassi >1imh_CD: title=TONEBP/DNA COMPLEX organism=Homo sapiens DNA sequence DC(B5003):DG(A4015) DT(B5004):DA(A4014) DA(B5005):DT(A4013) DT(B5006):DA(A4012) DT(B5007):DA(A4011) DT(B5008):DA(A4010) DT(B5009):DA(A4009) DT(B5010):DA(A4008) DC(B5011):DG(A4007) DC(B5012):DG(A4006) DA(B5013):DT(A4005) DG(B5014):DC(A4004) DC(B5015):DG(A4003) chainC ( 30) ARG217 0 0 0 0 0 0 0 4 10 4 0 0 0 ( 33) TYR220 0 0 0 0 0 0 7 5 0 0 0 0 0 ( 35) THR222 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 36) GLU223 0 0 0 0 0 0 0 6 4 0 0 0 0 ( 39) ARG226 0 0 0 0 0 0 0 0 2 10 10 0 0 (177) GLN364 0 0 0 0 0 0 1 11 3 0 0 0 0 chainD ( 33) TYR220 0 0 2 3 0 0 0 0 0 0 0 0 0 ( 35) THR222 0 0 1 0 0 0 0 0 0 0 0 0 0 ( 36) GLU223 5 1 1 0 0 0 0 0 0 0 0 0 0 prot.sequence kkspmlcgqypvksegkelkivvqpetqhRarYlTEgsRgsvkdrtqqgfptvkleghnepvvlqvfvgndsgrvkphgfyqacrvtgrnttpckevdiegttvievgldpsnnmtlavdcvgilklrnadvearigiagskkkstrarlvfrvnimrkdgstltlqtpsspilctQpagvpeilkkslhscsvkgeeevfligknflkgtkvifqenvsdenswkseaeidmelfhqnhlivkvppyhdqhitlpvsvgiyvvtnagrshdvqpftytpd/kkspmlcgqypvksegkelkivvqpetqhrarYlTEgsrgsvkdrtqqgfptvkleghnepvvlqvfvgndsgrvkphgfyqacrvtgrnttpckevdiegttvievgldpsnnmtlavdcvgilklrnadvearigiagskkkstrarlvfrvnimrkdgstltlqtpsspilctqpagvpeilkkslhscsvkgeeevfligknflkgtkvifqenvsdenswkseaeidmelfhqnhlivkvppyhdqhitlpvsvgiyvvtnagrshdvqpftytpd >1io4_A:Leucine_zipper_domain; title=CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN-CBFBETA CORE DOMAIN HETERODIMER AND C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER organism=HOMO SAPIENS DNA sequence DA(E2):DT(F26) DA(E3):DT(F25) DG(E4):DC(F24) DA(E5):DT(F23) DT(E6):DA(F22) DT(E7):DA(F21) DT(E8):DA(F20) DC(E9):DG(F19) DC(E10):DG(F18) DA(E11):DT(F17) DA(E12):DT(F16) DA(E13):DT(F15) DC(E14):DG(F14) DT(E15):DA(F13) DC(E16):DG(F12) DT(E17):DA(F11) DG(E18):DC(F10) DT(E19):DA(F9) DG(E20):DC(F8) DG(E21):DC(F7) DT(E22):DA(F6) DT(E23):DA(F5) DG(E24):DC(F4) DC(E25):DG(F3) DG(E26):DC(F2) chainA ( 10) ARG278 0 0 0 0 0 7 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 13) ASN281 0 0 0 2 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 14) ASN282 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 16) ALA284 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 17) VAL285 0 0 0 0 3 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 20) SER288 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 21) ARG289 0 0 0 0 0 0 2 10 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence khsdeykirRerNNiAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlf >1io4_ABC: title=CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN-CBFBETA CORE DOMAIN HETERODIMER AND C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER organism=MUS MUSCULUS / HOMO SAPIENS DNA sequence DA(E2):DT(F26) DA(E3):DT(F25) DG(E4):DC(F24) DA(E5):DT(F23) DT(E6):DA(F22) DT(E7):DA(F21) DT(E8):DA(F20) DC(E9):DG(F19) DC(E10):DG(F18) DA(E11):DT(F17) DA(E12):DT(F16) DA(E13):DT(F15) DC(E14):DG(F14) DT(E15):DA(F13) DC(E16):DG(F12) DT(E17):DA(F11) DG(E18):DC(F10) DT(E19):DA(F9) DG(E20):DC(F8) DG(E21):DC(F7) DT(E22):DA(F6) DT(E23):DA(F5) DG(E24):DC(F4) DC(E25):DG(F3) DG(E26):DC(F2) chainA ( 10) ARG278 0 0 0 0 0 7 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 13) ASN281 0 0 0 2 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 14) ASN282 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 16) ALA284 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 17) VAL285 0 0 0 0 3 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 20) SER288 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 21) ARG289 0 0 0 0 0 0 2 10 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 14) ARG278 0 0 0 0 0 0 0 0 0 8 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 17) ASN281 0 0 0 0 0 0 0 0 0 0 4 6 1 0 0 0 0 0 0 0 0 0 0 0 0 ( 18) ASN282 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 20) ALA284 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 ( 21) VAL285 0 0 0 0 0 0 0 0 0 1 4 2 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 24) SER288 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) ARG289 0 0 0 0 0 0 7 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainC ( 21) ARG80 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 10 0 0 0 0 0 0 0 0 ( 83) ARG142 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 5 0 0 (111) VAL170 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 (112) ASP171 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 7 8 0 0 0 0 0 (115) ARG174 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19 14 2 0 0 0 0 0 (118) ARG177 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 14 8 0 0 0 0 prot.sequence khsdeykirRerNNiAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlf/ktvdkhsdeykirRerNNiAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkql/gelvrtdspnflcsvlpthwRcnktlpiafkvvalgdvpdgtlvtvmagndenysaelrnataamknqvarfndlrfvgrsgRgksftltitvftnppqvatyhraikitVDgpRepRrh >1ipp_A:His-Me_finger_endonucleases; title=HOMING ENDONUCLEASE/DNA COMPLEX organism=Physarum polycephalum DNA sequence DT(C202):DA(D221) DG(C203):DC(D220) DA(C204):DT(D219) DC(C205):DG(D218) DT(C206):DA(D217) DC(C207):DG(D216) DT(C208):DA(D215) DC(C209):DG(D214) DT(C210):DA(D213) DT(C211):DA(D212) DA(C212):DT(D211) DA(C213):DT(D210) DG(C214):DC(D209) DA(C215):DT(D208) DG(C216):DC(D207) DA(C217):DT(D206) DG(C218):DC(D205) DT(C219):DA(D204) DC(C220):DG(D203) DA(C221):DT(D202) chainA ( 54) ALA55 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 56) ASN57 0 0 0 0 6 9 4 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 60) ARG61 0 0 0 0 0 0 9 7 0 0 0 0 0 0 0 0 0 0 0 0 ( 62) GLN63 0 0 0 1 13 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 64) LYS65 8 7 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 66) THR67 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 71) VAL72 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 73) ARG74 0 0 0 13 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (115) LEU116 0 0 0 0 0 0 0 0 8 2 0 0 0 0 0 0 0 0 0 0 (119) LYS120 0 0 0 0 0 0 0 0 4 7 1 0 0 0 0 0 0 0 0 0 prot.sequence altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv >1ipp_AB:His-Me_finger_endonucleases; title=HOMING ENDONUCLEASE/DNA COMPLEX organism=Physarum polycephalum DNA sequence DT(D202):DA(C221) DG(D203):DC(C220) DA(D204):DT(C219) DC(D205):DG(C218) DT(D206):DA(C217) DC(D207):DG(C216) DT(D208):DA(C215) DC(D209):DG(C214) DT(D210):DA(C213) DT(D211):DA(C212) DA(D212):DT(C211) DA(D213):DT(C210) DG(D214):DC(C209) DA(D215):DT(C208) DG(D216):DC(C207) DA(D217):DT(C206) DG(D218):DC(C205) DT(D219):DA(C204) DC(D220):DG(C203) DA(D221):DT(C202) chainA ( 54) ALA55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 ( 56) ASN57 0 0 0 0 0 0 0 0 0 0 0 0 0 4 9 6 0 0 0 0 ( 60) ARG61 0 0 0 0 0 0 0 0 0 0 0 0 7 9 0 0 0 0 0 0 ( 62) GLN63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 13 1 0 0 0 ( 64) LYS65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 7 8 ( 66) THR67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 ( 71) VAL72 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 ( 73) ARG74 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23 13 0 0 0 (115) LEU116 0 0 0 0 0 0 0 0 0 0 2 8 0 0 0 0 0 0 0 0 (119) LYS120 0 0 0 0 0 0 0 0 0 1 7 4 0 0 0 0 0 0 0 0 chainB ( 54) ALA55 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 56) ASN57 0 0 0 0 6 7 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 60) ARG61 0 0 0 0 0 0 10 7 0 0 0 0 0 0 0 0 0 0 0 0 ( 62) GLN63 0 0 0 0 10 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 64) LYS65 8 7 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 66) THR67 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 73) ARG74 0 0 0 10 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (115) LEU116 0 0 0 0 0 0 0 0 5 1 0 0 0 0 0 0 0 0 0 0 (119) LYS120 0 0 0 0 0 0 0 0 4 4 1 0 0 0 0 0 0 0 0 0 prot.sequence altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv/altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvvhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv >1iv6_A:Homeodomain-like; title=SOLUTION STRUCTURE OF THE DNA COMPLEX OF HUMAN TRF1 organism=HOMO SAPIENS DNA sequence DG(B1):DC(C26) DT(B2):DA(C25) DT(B3):DA(C24) DA(B4):DT(C23) DG(B5):DC(C22) DG(B6):DC(C21) DG(B7):DC(C20) DT(B8):DA(C19) DT(B9):DA(C18) DA(B10):DT(C17) DG(B11):DC(C16) DG(B12):DC(C15) DG(B13):DC(C14) chainA ( 3) ARG380 0 0 0 0 0 0 0 11 7 8 0 0 0 ( 40) SER417 0 0 4 0 0 0 0 0 0 0 0 0 0 ( 41) VAL418 0 0 2 0 1 3 0 0 0 0 0 0 0 ( 42) MET419 0 0 0 0 0 1 3 0 0 0 0 0 0 ( 44) LYS421 0 0 0 6 4 0 0 0 0 0 0 0 0 ( 45) ASP422 0 0 0 0 0 5 11 0 0 0 0 0 0 ( 48) ARG425 0 0 0 0 11 15 7 0 0 0 0 0 0 ( 49) THR426 0 0 0 0 0 0 0 0 1 0 0 0 0 prot.sequence rkRqawlweedknlrsgvrkygegnwskillhykfnnrtSVMlKDrwRTmkklklis >1j1v_A:TrpR-like; title=CRYSTAL STRUCTURE OF DNAA DOMAINIV COMPLEXED WITH DNAABOX DNA organism=ESCHERICHIA COLI DNA sequence DT(B101):DA(C213) DG(B102):DC(C212) DT(B103):DA(C211) DT(B104):DA(C210) DA(B105):DT(C209) DT(B106):DA(C208) DC(B107):DG(C207) DC(B108):DG(C206) DA(B109):DT(C205) DC(B110):DG(C204) DA(B111):DT(C203) DG(B112):DC(C202) DG(B113):DC(C201) chainA ( 26) ARG399 0 0 1 5 7 0 0 0 0 0 0 0 0 ( 49) LEU422 0 0 0 0 0 0 0 0 0 0 1 0 0 ( 50) PRO423 0 0 0 0 0 0 0 0 0 0 2 0 0 ( 60) ASP433 0 0 0 0 0 0 1 6 0 0 0 0 0 ( 61) HIS434 0 0 0 0 0 0 0 0 0 10 14 0 0 ( 62) THR435 0 0 0 0 0 0 5 6 5 1 0 0 0 ( 63) THR436 0 0 0 0 0 2 2 0 0 0 0 0 0 ( 65) LEU438 0 0 0 0 0 0 0 0 1 1 0 0 0 ( 66) HIS439 0 0 0 0 5 6 0 0 0 0 0 0 0 prot.sequence vtidniqktvaeyykikvadllskrRsrsvarprqmamalakeltnhsLPeigdafggrDHTTvLHacrkieqlreeshdikedfsnlirtlss >1j3e_A:Replication_modulator_SeqA,_C-terminal_DNA-binding_domain; title=CRYSTAL STRUCTURE OF THE E.COLI SEQA PROTEIN COMPLEXED WITH N6- METHYLADENINE- GUANINE MISMATCH DNA organism=ESCHERICHIA COLI DNA sequence DT(C211):DA(B210) DT(C212):DA(B209) DG(C213):DC(B208) DG(C214):DC(B207) DA(C215):DT(B206) DG(C216):6MA(B205) DC(C217):DG(B204) DC(C218):DG(B203) DT(C219):DA(B202) DT(C220):DA(B201) chainA ( 50) ARG51 0 3 0 0 0 0 0 0 0 0 ( 52) ARG53 0 0 0 0 5 0 0 0 0 0 ( 70) LYS71 0 0 0 0 0 0 1 1 0 0 ( 84) ASN85 0 0 0 0 8 8 5 0 0 0 ( 86) ASN87 0 0 0 1 9 3 0 0 0 0 ( 89) ARG90 0 0 4 0 0 0 0 0 0 0 prot.sequence plgsamrelllsdeyaeqkravnrfmlllstlysldaqafaeateslhgRtRvyfaadeqtllkngnqtKpkhvpgtpywvitNtNtgRkcsmiehimqsmqfpaeliekvcgti >1j46_A:HMG-box; title=3D SOLUTION NMR STRUCTURE OF THE WILD TYPE HMG-BOX DOMAIN OF THE HUMAN MALE SEX DETERMINING FACTOR SRY COMPLEXED TO DNA organism=HOMO SAPIENS DNA sequence DC(B101):DG(C128) DC(B102):DG(C127) DT(B103):DA(C126) DG(B104):DC(C125) DC(B105):DG(C124) DA(B106):DT(C123) DC(B107):DG(C122) DA(B108):DT(C121) DA(B109):DT(C120) DA(B110):DT(C119) DC(B111):DG(C118) DA(B112):DT(C117) DC(B113):DG(C116) DC(B114):DG(C115) chainA ( 7) ARG7 0 0 0 0 1 10 3 0 0 0 0 0 0 0 ( 10) ASN10 0 0 0 0 0 0 6 1 0 0 0 0 0 0 ( 12) PHE12 0 0 0 0 0 0 0 5 4 0 0 0 0 0 ( 13) ILE13 0 0 0 0 0 0 0 9 8 0 0 0 0 0 ( 20) ARG20 0 0 0 0 0 0 0 0 3 10 0 0 0 0 ( 32) ASN32 0 0 0 0 0 0 0 0 0 7 15 0 0 0 ( 33) SER33 0 0 0 0 0 0 0 0 0 0 5 0 0 0 ( 36) SER36 0 0 0 0 0 0 0 0 1 5 0 0 0 0 ( 74) TYR74 0 0 0 0 7 9 0 0 0 0 0 0 0 0 ( 76) PRO76 0 0 0 0 1 0 0 0 0 0 0 0 0 0 prot.sequence mqdrvkRpmNaFIvwsrdqRrkmalenprmrNSeiSkqlgyqwkmlteaekwpffqeaqklqamhrekypnykYrPrrkakmlpk >1j47_A:HMG-box; title=3D SOLUTION NMR STRUCTURE OF THE M9I MUTANT OF THE HMG-BOX DOMAIN OF THE HUMAN MALE SEX DETERMINING FACTOR SRY COMPLEXED TO DNA organism=HOMO SAPIENS DNA sequence DG(C115):DC(B114) DG(C116):DC(B113) DT(C117):DA(B112) DG(C118):DC(B111) DT(C119):DA(B110) DT(C120):DA(B109) DT(C121):DA(B108) DG(C122):DC(B107) DT(C123):DA(B106) DG(C124):DC(B105) DC(C125):DG(B104) DA(C126):DT(B103) DG(C127):DC(B102) DG(C128):DC(B101) chainA ( 7) ARG7 0 0 0 0 0 0 0 5 4 0 0 0 0 0 ( 10) ASN10 0 0 0 0 0 0 0 8 1 0 0 0 0 0 ( 12) PHE12 0 0 0 0 0 4 8 0 0 0 0 0 0 0 ( 13) ILE13 0 0 0 0 0 7 6 0 0 0 0 0 0 0 ( 20) ARG20 0 0 0 0 11 0 0 0 0 0 0 0 0 0 ( 32) ASN32 0 0 0 19 4 0 0 0 0 0 0 0 0 0 ( 33) SER33 0 0 0 7 1 0 0 0 0 0 0 0 0 0 ( 36) SER36 0 0 0 0 5 1 0 0 0 0 0 0 0 0 ( 74) TYR74 0 0 0 0 0 0 0 0 8 4 0 0 0 0 ( 76) PRO76 0 0 0 0 0 0 0 0 0 1 0 0 0 0 ( 78) ARG78 0 0 0 0 0 0 0 0 0 0 1 1 0 0 prot.sequence mqdrvkRpiNaFIvwsrdqRrkmalenprmrNSeiSkqlgyqwkmlteaekwpffqeaqklqamhrekypnykYrPrRkakmlpk >1j59_A:cAMP-binding_domain-like;"Winged_helix"_DNA-binding_domain; title=CATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA COMPLEX + ADENOSINE-3',5'- CYCLIC-MONOPHOSPHATE organism=Escherichia coli DNA sequence DC(E26):DG(D26) DG(E25):DC(D25) DA(E24):DT(D24) DA(E23):DT(D23) DA(E22):DT(D22) DA(E21):DT(D21) DG(E20):DC(D20) DT(E19):DA(D19) DG(E18):DC(D18) DT(E17):DA(D17) DG(E16):DC(D16) DA(E15):DT(D15) DC(E14):DG(D14) DA(F13):DT(D13) DT(F12):DA(D12) DA(F11):DT(D11) DT(F10):DA(D10) DG(F9):DC(C9) DT(F8):DA(C8) DC(F7):DG(C7) DA(F6):DT(C6) DC(F5):DG(C5) DA(F4):DT(C4) DC(F3):DG(C3) DT(F2):DA(C2) DT(F1):DA(C1) DT(F-1):DA(C-1) DT(F-2):DA(C-2) DC(F-3):DG(C-3) DG(F-4):DC(C-4) chainA (162) GLN170 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 (171) SER179 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 (172) ARG180 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 8 14 0 0 0 0 0 0 0 (173) GLU181 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 8 8 1 0 0 0 0 0 0 0 0 (177) ARG185 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 8 6 0 0 0 0 0 0 0 0 0 prot.sequence ptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemilsylnqgdfigelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqmarrlqvtsekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrQeigqivgcSREtvgRilkmledqnlisahgktivvyg >1j5o_AB:DNA/RNA_polymerases;Ribonuclease_H-like; title=CRYSTAL STRUCTURE OF MET184ILE MUTANT OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH DOUBLE STRANDED DNA TEMPLATE-PRIMER organism=HUMAN IMMUNODEFICIENCY VIRUS 1 DNA sequence DG(P821):DC(T819) DT(P822):DA(T818) DC(P823):DG(T817) DC(P824):DG(T816) DC(P825):DG(T815) DT(P826):DA(T814) DG(P827):DC(T813) DT(P828):DA(T812) DT(P829):DA(T811) DC(P830):DG(T810) DG(P831):DC(T809) DG(P832):DC(T808) DG(P833):DC(T807) DC(P834):DG(T806) DG(P835):DC(T805) DC(P836):DG(T804) DC(P837):DG(T803) DA(P838):DT(T802) chainA ( 94) ILE94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 (115) TYR115 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 (157) PRO157 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 (183) TYR183 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 (184) ILE184 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 (265) ASN265 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 (266) TRP266 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 (475) GLN475 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB prot.sequence pispietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaikkkdstkwrklvdfrelnkrtqdfwevqlgIphpaglkkkksvtvldvgdaYfsvpldedfrkytaftipsinnetpgiryqynvlpqgwkgsPaifqssmtkilepfkkqnpdiviyqYIddlyvgsdleigqhrtkieelrqhllrwglttpdkkhqkeppflwmgyelhpdkwtvqpivlpekdswtvndiqklvgklNWasqiypgikvrqlskllrgtkalteviplteeaelelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyarmrgahtndvkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwipewefvntpplvklwyqlekepivgaetfyvdgaanretklgkagyvtnkgrqkvvpltnttnQktelqaiylalqdsglevnivtdsqyalgiiqaqpdkseselvnqiieqlikkekvylawvpahkgiggneqvdklvsagirk/pispietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaikkkdstkwrklvdfrelnkrtqdfwevqlgIphpaglkkkksvtvldvgdaYfsvpldedfrkytaftipsinnetpgiryqynvlpqgwkgsPaifqssmtkilepfkkqnpdiviyqYIddlyvgsdleigqhrtkieelrqhllrwglttpdkkhqkeppflwmgyelhpdkwtvqpivlpekdswtvndiqklvgklNWasqiypgikvrqlskllrgtkalteviplteeaelelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyarmrgahtndvkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwipewefvntpplvklwyqle >1jb7_B:Nucleic_acid-binding_proteins; title=DNA G-QUARTETS IN A 1.86 A RESOLUTION STRUCTURE OF AN OXYTRICHA NOVA TELOMERIC PROTEIN-DNA COMPLEX organism=STERKIELLA NOVA DNA sequence DG(D11) DG(D10) DG(D9) DT(D8) DT(D7) DT(D6) DT(D5) DG(D4) DG(D3) DG(D1) DG(D2):DG(D3) chainB ( 36) LYS44 0 0 0 0 0 1 0 0 0 0 0 ( 37) GLU45 0 0 13 0 0 4 0 0 0 0 0 ( 40) PRO48 0 0 1 0 0 0 0 0 0 0 0 ( 41) HIS49 0 0 15 0 0 0 0 0 0 0 0 ( 43) LEU51 0 0 3 0 0 0 0 0 0 0 0 ( 50) PHE58 0 0 1 0 0 0 0 0 0 0 0 ( 98) PHE106 0 0 10 0 0 0 0 0 0 0 0 (101) TYR109 0 5 0 0 0 0 0 0 0 0 0 (126) TYR134 0 0 0 0 0 0 1 51 0 0 0 (132) ARG140 0 37 0 0 0 0 0 0 0 0 0 (137) LYS145 0 6 0 0 0 0 0 0 0 0 0 prot.sequence qqqsafkqlytelfnnegdfskvssnlkkplkcyvkesyphflvtdgyffvapyftkeavnefhakfpnvnivdltdkvivinnwslelrrvnsaevftsyanlearlivhsfkpnlqerlnptrypvnlfrddefkttiqhfrhtalqaainktvkgdnlvdiskvadaagkkgkvdagivkasaskgdefsdfsfkegntatlkiadifvqekg >1je8_A:C-terminal_effector_domain_of_the_bipartite_response_regulators; title=TWO-COMPONENT RESPONSE REGULATOR NARL/DNA COMPLEX: DNA BENDING FOUND IN A HIGH AFFINITY SITE organism=Escherichia coli DNA sequence DC(D21):DG(C20) DG(D22):DC(C19) DT(D23):DA(C18) DA(D24):DT(C17) DC(D25):DG(C16) DC(D26):DG(C15) DC(D27):DG(C14) DA(D28):DT(C13) DT(D29):DA(C12) DT(D30):DA(C11) DA(D31):DT(C10) DA(D32):DT(C9) DT(D33):DA(C8) DG(D34):DC(C7) DG(D35):DC(C6) DG(D36):DC(C5) DT(D37):DA(C4) DA(D38):DT(C3) DC(D39):DG(C2) DG(D40):DC(C1) chainA ( 35) SER185 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 36) THR186 0 0 3 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 38) LYS188 0 0 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 ( 39) VAL189 0 0 3 5 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 40) HIS190 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 42) LYS192 0 0 0 0 5 8 2 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence rdvnqltprerdilkliaqglpnkmiarrlditeSTvKVHvKhmlkkmklksrveaavwvhqerif >1je8_AB: title=TWO-COMPONENT RESPONSE REGULATOR NARL/DNA COMPLEX: DNA BENDING FOUND IN A HIGH AFFINITY SITE organism=Escherichia coli DNA sequence DC(D21):DG(C20) DG(D22):DC(C19) DT(D23):DA(C18) DA(D24):DT(C17) DC(D25):DG(C16) DC(D26):DG(C15) DC(D27):DG(C14) DA(D28):DT(C13) DT(D29):DA(C12) DT(D30):DA(C11) DA(D31):DT(C10) DA(D32):DT(C9) DT(D33):DA(C8) DG(D34):DC(C7) DG(D35):DC(C6) DG(D36):DC(C5) DT(D37):DA(C4) DA(D38):DT(C3) DC(D39):DG(C2) DG(D40):DC(C1) chainA ( 35) SER185 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 36) THR186 0 0 3 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 38) LYS188 0 0 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 ( 39) VAL189 0 0 3 5 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 40) HIS190 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 42) LYS192 0 0 0 0 5 8 2 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 35) SER185 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 ( 36) THR186 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 4 0 0 ( 38) LYS188 0 0 0 0 0 0 0 0 0 0 0 1 4 0 0 0 0 0 0 0 ( 39) VAL189 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 4 3 0 0 ( 40) HIS190 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 ( 42) LYS192 0 0 0 0 0 0 0 0 0 0 0 0 0 4 8 4 0 0 0 0 prot.sequence rdvnqltprerdilkliaqglpnkmiarrlditeSTvKVHvKhmlkkmklksrveaavwvhqerif/rdvnqltprerdilkliaqglpnkmiarrlditeSTvKVHvKhmlkkmklksrveaavwvhqerif >1je8_EF: title=TWO-COMPONENT RESPONSE REGULATOR NARL/DNA COMPLEX: DNA BENDING FOUND IN A HIGH AFFINITY SITE organism=Escherichia coli DNA sequence DC(G1):DG(H40) DG(G2):DC(H39) DT(G3):DA(H38) DA(G4):DT(H37) DC(G5):DG(H36) DC(G6):DG(H35) DC(G7):DG(H34) DA(G8):DT(H33) DT(G9):DA(H32) DT(G10):DA(H31) DA(G11):DT(H30) DA(G12):DT(H29) DT(G13):DA(H28) DG(G14):DC(H27) DG(G15):DC(H26) DG(G16):DC(H25) DT(G17):DA(H24) DA(G18):DT(H23) DC(G19):DG(H22) DG(G20):DC(H21) chainE ( 36) SER185 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 ( 37) THR186 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 4 0 0 ( 39) LYS188 0 0 0 0 0 0 0 0 0 0 0 1 4 0 0 0 0 0 0 0 ( 40) VAL189 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 4 3 0 0 ( 41) HIS190 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 ( 43) LYS192 0 0 0 0 0 0 0 0 0 0 0 0 0 2 8 6 0 0 0 0 chainF ( 35) SER185 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 36) THR186 0 0 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 38) LYS188 0 0 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 ( 39) VAL189 0 0 3 5 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 40) HIS190 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 42) LYS192 0 0 0 0 6 8 2 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence erdvnqltprerdilkliaqglpnkmiarrlditeSTvKVHvKhmlkkmklksrveaavwvhqerif/rdvnqltprerdilkliaqglpnkmiarrlditeSTvKVHvKhmlkkmklksrveaavwvhqerif >1jey_AB: title=CRYSTAL STRUCTURE OF THE KU HETERODIMER BOUND TO DNA organism=HOMO SAPIENS DNA sequence DG(C1):DC(D34) DT(C2):DA(D33) DT(C3):DA(D32) DT(C4):DA(D31) DT(C5):DA(D30) DT(C6):DA(D29) DA(C7):DT(D28) DG(C8):DC(D27) DT(C9):DA(D26) DT(C10):DA(D25) DT(C11):DA(D24) DA(C12):DT(D23) DT(C13):DA(D22) DT(C14):DA(D21) DG(C15):DT(D20) DG(C16):DC(D19) DG(C17):DG(D18) DC(C18):DA(D17) chainA chainB (385) ARG400 0 0 0 0 0 0 0 0 0 3 10 2 5 0 0 0 0 0 prot.sequence grdsliflvdaskamfesqsedeltpfdmsiqciqsvyiskiissdrdllavvfygtekdknsvnfkniyvlqeldnpgakrileldqfkgqqgqkrfqdmmghgsdyslsevlwvcanlfsdvqfkmshkrimlftnednphgndsakasrartkagdlrdtgifldlmhlkkpggfdislfyrdiisvhfeesskledllrkvraketrkralsrlklklnkdivisvgiynlvqkalkpppiklyretnepvktktrtfntstgglllpsdtkrsqiygsrqiilekeeteelkrfddpglmlmgfkplvllkkhhylrpslfvypeeslvigsstlfsallikclekevaalcrytprrnippyfvalvpqeeelddqkiqvtppgfqlvflpfaddkrkmpftekimatpeqvgkmkaiveklrftyrsdsfenpvlqqhfrnlealaldlmepeqavdltlpkveamnkrlgslvdefkelvyppdy/nkaavvlcmdvgftmsnsipgiespfeqakkvitmfvqrqvfaenkdeialvlfgtdgtdnplsggdqyqnitvhrhlmlpdfdlledieskiqpgsqqadfldalivsmdviqhetigkkfekrhieiftdlssrfsksqldiiihslkkcdislqfflpfslggpfrlgghgpsfplkgiteqqkegleivkmvmislegedgldeiysfseslrklcvfkkierhsihwpcrltigsnlsiriaayksilqervkktwtvvdaktlkkediqketvyclndddetevlkediiqgfrygsdivpfskvdeeqmkyksegkcfsvlgfckssqvqrrffmgnqvlkvfaarddeaaavalsslihalddldmvaivryaydkRanpqvgvafphikhnyeclvyvqlpfmedlrqymfsslknskkyapteaqlnavdalidsmslakkdektdtledlfpttkipnprfqrlfqcllhralhpreplppiqqhiwnmlnppaevttksqiplskiktlfplieakkk >1jfi_ABC: title=CRYSTAL STRUCTURE OF THE NC2-TBP-DNA TERNARY COMPLEX organism=HOMO SAPIENS DNA sequence DT(D602):DA(E718) DG(D603):DC(E717) DG(D604):DC(E716) DC(D605):DG(E715) DT(D606):DA(E714) DA(D607):DT(E713) DT(D608):DA(E712) DA(D609):DT(E711) DA(D610):DT(E710) DA(D611):DT(E709) DA(D612):DT(E708) DG(D613):DC(E707) DG(D614):DC(E706) DG(D615):DC(E705) DC(D616):DG(E704) DT(D617):DA(E703) DC(D618):DG(E702) chainA ( 20) LYS29 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 0 0 chainB ( 94) ARG202 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 2 chainC ( 12) ASN367 0 0 0 0 0 0 0 6 5 0 0 0 0 0 0 0 0 ( 14) VAL369 0 0 0 0 0 0 0 0 5 2 0 0 0 0 0 0 0 ( 42) PHE397 0 0 0 0 0 0 0 0 0 0 9 3 0 0 0 0 0 ( 57) LEU412 0 0 0 0 0 0 0 0 0 2 4 0 0 0 0 0 0 ( 59) PHE414 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 ( 65) VAL420 0 0 0 0 0 0 0 0 0 5 1 0 0 0 0 0 0 ( 67) THR422 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 (102) ASN457 0 0 0 0 0 0 0 5 5 0 0 0 0 0 0 0 0 (104) VAL459 0 0 0 0 0 0 2 5 0 0 0 0 0 0 0 0 0 (133) PHE488 0 0 0 0 8 14 0 0 0 0 0 0 0 0 0 0 0 (134) PRO489 0 0 0 1 5 0 0 0 0 0 0 0 0 0 0 0 0 (148) LEU503 0 0 0 0 0 3 4 0 0 0 0 0 0 0 0 0 0 (150) PHE505 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 (156) VAL511 0 0 0 0 0 1 6 0 0 0 0 0 0 0 0 0 0 (158) THR513 0 0 0 0 0 0 4 7 0 0 0 0 0 0 0 0 0 prot.sequence arfpparikkimqtdeeigKvaaavpviisralelflesllkkacqvtqsrtmttshlkqcie/ddltipraainkmiketlpnvrvandarelvvncctefihlisseaneicnksekktispehviqaleslgfgsyisevkevlqecktvalkrRkassrlenlgipeeellrqqqelfakarqqqaelaqqewlq/shmsgivpqlqNiVstvnlgckldlktialrarnaeynpkrFaavimrireprttaLiFssgkmVcTgakseeqsrlaarkyarvvqklgfpakfldfkiqNmVgscdvkfpirleglvlthqqfssyepelFPgliyrmikprivlLiFvsgkvVlTgakvraeiyeafeniypilkgfrkt >1jfs_A:Periplasmic_binding_protein-like_I;lambda_repressor-like_DNA-binding_domains; title=PURINE REPRESSOR MUTANT-HYPOXANTHINE-PURF OPERATOR COMPLEX organism=Escherichia coli DNA sequence DT(B699) DA(B700) DC(B701) DG(B702) DC(B703) DA(B704) DA(B705) DA(B706) DC(B707) DG(B708) DT(B709) DT(B710) DT(B711) DG(B712) DC(B713) DG(B714) DT(B715) chainA ( 13) SER14 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 15) THR16 0 0 0 1 5 1 0 0 0 0 0 0 0 0 0 0 0 ( 25) ARG26 0 0 21 11 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 53) LEU54 0 0 0 0 0 0 0 0 6 3 0 0 0 0 0 0 0 ( 54) LYS55 0 0 0 0 0 0 0 8 3 0 0 0 0 0 0 0 0 prot.sequence atikdvakranvStTtvshvinktRfvaeetrnavwaaikelhyspsavarsLKvnhtksigllatsseaayfaeiieavekncfqkgytlilgnawnnlekqraylsmmaqkrvdgllvmcseypepllamleeyrhipmvvmdfgeakadftdavidnafeggymagrylierghreigvipgplerntgagrlagfmkameeamikvpeswivqgdfepesgyramqqilsqphrptavfcggdimamgalcaademglrvpqdvsligydnvrnaryftpalttihqpkdslgetafnmlldrivnkreepqsievhprlierrsvadgpfrdyr >1jgg_AB: title=EVEN-SKIPPED HOMEODOMAIN COMPLEXED TO AT-RICH DNA organism=Drosophila melanogaster DNA sequence DA(D211):DT(C210) DA(D212):DT(C209) DT(D213):DA(C208) DT(D214):DA(C207) DC(D215):DG(C206) DA(D216):DT(C205) DA(D217):DT(C204) DT(D218):DA(C203) DT(D219):DA(C202) DA(D220):DT(C201) chainA ( 1) ARG103 0 0 10 13 0 0 0 0 0 0 ( 2) TYR104 0 0 0 13 4 0 0 0 0 0 ( 3) ARG105 0 0 0 0 3 6 0 0 0 0 ( 45) VAL147 0 2 2 0 0 0 0 0 0 0 ( 49) ASN151 0 2 12 7 0 0 0 0 0 0 ( 52) MET154 7 8 1 0 0 0 0 0 0 0 ( 56) ARG158 0 0 2 0 0 0 0 0 0 0 chainB ( 1) ARG303 0 0 0 0 0 0 1 8 10 0 ( 2) TYR304 0 0 0 0 0 0 0 0 15 3 ( 3) ARG305 0 0 0 0 0 0 0 0 0 5 ( 45) VAL347 0 0 0 0 0 0 3 2 0 0 ( 48) GLN350 0 0 0 0 0 3 8 0 0 0 ( 49) ASN351 0 0 0 0 0 0 2 11 6 0 ( 52) MET354 0 0 0 0 0 0 6 4 0 0 ( 53) LYS355 0 0 0 0 0 0 0 0 0 2 ( 56) ARG358 0 0 0 0 0 0 1 3 0 0 prot.sequence RYRtaftrdqlgrlekefykenyvsrprrcelaaqlnlpestikVwfQNrrMkdkRq/RYRtaftrdqlgrlekefykenyvsrprrcelaaqlnlpestikVwfQNrrMKdkRq >1jh9_A:Periplasmic_binding_protein-like_I;lambda_repressor-like_DNA-binding_domains; title=PURINE REPRESSOR MUTANT-HYPOXANTHINE-PURF OPERATOR COMPLEX organism=Escherichia coli DNA sequence DA(B699) DA(B700) DC(B701) DG(B702) DA(B703) DA(B704) DA(B705) DA(B706) DC(B707) DG(B708) DT(B709) DT(B710) DT(B711) DT(B712) DC(B713) DG(B714) DT(B715) chainA ( 13) SER14 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 14) THR15 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 ( 15) THR16 0 0 0 6 6 3 0 0 0 0 0 0 0 0 0 0 0 ( 25) ARG26 0 0 23 10 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 53) LEU54 0 0 0 0 0 0 0 0 6 5 0 0 0 0 0 0 0 ( 54) LYS55 0 0 0 0 0 0 0 7 5 0 0 0 0 0 0 0 0 prot.sequence atikdvakranvSTTtvshvinktRfvaeetrnavwaaikelhyspsavarsLKvnhtksigllatsseaayfaeiieavekncfqkgytlilgnawnnlekqraylsmmaqkrvdgllvmcseypepllamleeyrhipmvvmdrgeakadftdavidnafeggymagrylierghreigvipgplerntgagrlagfmkameeamikvpeswivqgdfepesgyramqqilsqphrptavfcggdimamgalcaademglrvpqdvsligydnvrnaryftpalttihqpkdslgetafnmlldrivnkreepqsievhprlierrsvadgpfrdyr >1jj4_AB: title=HUMAN PAPILLOMAVIRUS TYPE 18 E2 DNA-BINDING DOMAIN BOUND TO ITS DNA TARGET organism=Human papillomavirus type 18 DNA sequence DC(C602):DG(D917) DA(C603):DT(D916) DA(C604):DT(D915) DC(C605):DG(D914) DC(C606):DG(D913) DG(C607):DC(D912) DA(C608):DT(D911) DA(C609):DT(D910) DT(C610):DA(D909) DT(C611):DA(D908) DC(C612):DG(D907) DG(C613):DC(D906) DG(C614):DC(D905) DT(C615):DA(D904) DT(C616):DA(D903) DG(C617):DC(D902) chainA ( 12) ASN297 0 0 0 0 0 0 0 0 0 0 0 0 6 4 0 0 ( 15) LYS300 0 0 0 0 0 0 0 0 0 0 5 16 7 0 0 0 ( 16) CYS301 0 0 0 0 0 0 0 0 0 0 0 0 2 1 4 0 ( 19) TYR304 0 0 0 0 0 0 0 0 0 0 0 0 6 5 0 0 ( 20) ARG305 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 9 chainB ( 13) ASN297 0 0 6 8 0 0 0 0 0 0 0 0 0 0 0 0 ( 16) LYS300 0 0 0 7 16 6 0 0 0 0 0 0 0 0 0 0 ( 17) CYS301 0 4 4 2 0 0 0 0 0 0 0 0 0 0 0 0 ( 20) TYR304 0 0 4 7 0 0 0 0 0 0 0 0 0 0 0 0 ( 21) ARG305 9 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence mtpiihlkgdrNslKClrYRlrkhsdhyrdisstwhwtktgiltvtyhsetqrtkflntvaipdsvqilvgymt/hmtpiihlkgdrNslKClrYRlrkhsdhyrdisstwhwtektgiltvtyhsetqrtkflntvaipdsvqilvgymt >1jj6_C:Homeodomain-like; title=TESTING THE WATER-MEDIATED HIN RECOMBINASE DNA RECOGNITION BY SYSTEMATIC MUTATIONS. organism=? DNA sequence DG(A3):DC(B29) DT(A4):DA(B28) 5IU(A5):DA(B27) DT(A6):DA(B26) DT(A7):DA(B25) DT(A8):DA(B24) DG(A9):DC(B23) DA(A10):DT(B22) DT(A11):DA(B21) DA(A12):DT(B20) DA(A13):DT(B19) DG(A14):DC(B18) chainC ( 2) ARG140 0 0 4 14 4 1 0 0 0 0 0 0 ( 36) SER174 0 0 0 0 0 0 5 9 4 0 0 0 ( 37) THR175 0 0 0 0 0 0 2 0 0 0 0 0 ( 39) TYR177 0 0 0 0 0 0 0 0 0 5 5 0 ( 40) ARG178 0 0 0 0 0 11 9 0 0 0 0 0 prot.sequence gRprainkheqeqisrllekghprqqlaiifgigvSTlYRyfpassi >1jj8_C:Homeodomain-like; title=TESTING THE WATER-MEDIATED HIN RECOMBINASE DNA RECOGNITION BY SYSTEMATIC MUTATIONS organism=? DNA sequence DG(A3):DC(B29) 5IU(A4):DA(B28) DT(A5):DA(B27) DT(A6):DA(B26) DT(A7):DA(B25) DT(A8):DA(B24) DG(A9):DC(B23) DA(A10):DT(B22) DT(A11):DA(B21) DA(A12):DT(B20) DA(A13):DT(B19) DG(A14):DC(B18) chainC ( 2) ARG140 0 0 4 14 6 1 0 0 0 0 0 0 ( 36) SER174 0 0 0 0 0 0 6 10 4 0 0 0 ( 37) THR175 0 0 0 0 0 0 4 0 0 0 0 0 ( 39) TYR177 0 0 0 0 0 0 0 0 0 7 10 0 ( 40) ARG178 0 0 0 0 0 9 8 0 0 0 0 0 prot.sequence gRprainkheqeqisrllekghprqqlaiifgigvSTlYRyfpassikk >1jk1_A:beta-beta-alpha_zinc_fingers; title=ZIF268 D20A MUTANT BOUND TO WT DNA SITE organism=MUS MUSCULUS DNA sequence DC(C52):DG(B11) DC(C53):DG(B10) DG(C54):DC(B9) DC(C55):DG(B8) DC(C56):DG(B7) DC(C57):DG(B6) DA(C58):DT(B5) DC(C59):DG(B4) DG(C60):DC(B3) DC(C61):DG(B2) chainA ( 16) ARG118 7 12 5 0 0 0 0 0 0 0 ( 18) ALA120 2 0 0 0 0 0 0 0 0 0 ( 19) GLU121 0 0 12 0 0 0 0 0 0 0 ( 22) ARG124 0 0 4 11 8 0 0 0 0 0 ( 44) ARG146 0 0 0 3 13 13 0 0 0 0 ( 46) ASP148 0 0 4 6 1 0 0 0 0 0 ( 47) HIS149 0 0 0 0 0 11 27 0 0 0 ( 50) THR152 0 0 0 0 0 0 1 0 0 0 ( 72) ARG174 0 0 0 0 0 0 11 12 14 0 ( 74) ASP176 0 0 0 0 0 1 7 2 0 0 ( 75) GLU177 0 0 0 0 0 0 0 0 5 1 ( 78) ARG180 0 0 0 0 0 0 0 0 5 11 prot.sequence rpyacpvescdrrfsRsAEltRhirihtgqkpfqcricmrnfsRsDHltThirthtgekpfacdicgrkfaRsDErkRhtkihlr >1jk2_A:beta-beta-alpha_zinc_fingers; title=ZIF268 D20A MUTANT BOUND TO THE GCT DNA SITE organism=MUS MUSCULUS DNA sequence DC(C52):DG(B11) DA(C53):DT(B10) DG(C54):DC(B9) DC(C55):DG(B8) DC(C56):DG(B7) DC(C57):DG(B6) DA(C58):DT(B5) DC(C59):DG(B4) DG(C60):DC(B3) DC(C61):DG(B2) chainA ( 16) ARG118 0 3 6 0 0 0 0 0 0 0 ( 18) ALA120 1 0 0 0 0 0 0 0 0 0 ( 19) GLU121 0 0 10 2 0 0 0 0 0 0 ( 22) ARG124 0 0 4 10 10 0 0 0 0 0 ( 44) ARG146 0 0 0 3 13 13 0 0 0 0 ( 46) ASP148 0 0 3 6 1 0 0 0 0 0 ( 47) HIS149 0 0 0 0 0 12 27 0 0 0 ( 50) THR152 0 0 0 0 0 0 1 0 0 0 ( 72) ARG174 0 0 0 0 0 0 11 14 16 0 ( 74) ASP176 0 0 0 0 0 1 5 1 0 0 ( 75) GLU177 0 0 0 0 0 0 0 0 5 1 ( 78) ARG180 0 0 0 0 0 0 0 0 5 11 prot.sequence rpyacpvescdrrfsRsAEltRhirihtgqkpfqcricmrnfsRsDHltThirthtgekpfacdicgrkfaRsDErkRhtkihlr >1jkp_C:Homeodomain-like; title=TESTING THE WATER-MEDIATED HIN RECOMBINASE DNA RECOGNITION BY SYSTEMATIC MUTATIONS organism=? DNA sequence DG(A3):DC(B29) DT(A4):DA(B28) DT(A5):DA(B27) DT(A6):DA(B26) DT(A7):DA(B25) DT(A8):DA(B24) DG(A9):DC(B23) DA(A10):DT(B22) DG(A11):DC(B21) DA(A12):DT(B20) DA(A13):DT(B19) DG(A14):DC(B18) chainC ( 2) ARG140 0 0 4 15 3 1 0 0 0 0 0 0 ( 36) SER174 0 0 0 0 0 0 3 9 3 0 0 0 ( 37) THR175 0 0 0 0 0 0 2 0 0 0 0 0 ( 39) TYR177 0 0 0 0 0 0 0 0 0 5 3 0 ( 40) ARG178 0 0 0 0 0 9 6 0 0 0 0 0 prot.sequence gRprainkheqeqisrllekghprqqlaiifgigvSTlYRyfpassi >1jkq_C:Homeodomain-like; title=TESTING THE WATER-MEDIATED HIN RECOMBINASE DNA RECOGNITION BY SYSTEMATIC MUTATIONS organism=? DNA sequence DC(B18):DG(A14) DT(B19):DA(A13) DT(B20):DA(A12) DA(B21):DT(A11) DT(B22):DA(A10) DA(B23):DT(A9) DA(B24):DT(A8) DA(B25):DT(A7) DA(B26):DT(A6) DA(B27):DT(A5) DA(B28):DT(A4) DC(B29):DG(A3) chainC ( 1) ARG140 0 0 0 0 0 0 1 7 12 1 0 0 ( 35) SER174 0 0 0 4 7 2 0 0 0 0 0 0 ( 36) THR175 0 0 0 0 0 3 0 0 0 0 0 0 ( 38) TYR177 0 3 5 0 0 0 0 0 0 0 0 0 ( 39) ARG178 0 0 0 0 0 3 2 0 0 0 0 0 prot.sequence RprainkheqeqisrllekghprqqlaiifgigvSTlYRyfpassi >1jkr_C:Homeodomain-like; title=TESTING THE WATER-MEDIATED HIN RECOMBINASE DNA RECOGNITION BY SYSTEMATIC MUTATIONS organism=? DNA sequence DG(A3):DC(B29) DT(A4):DA(B28) DT(A5):DA(B27) DT(A6):DA(B26) DT(A7):DA(B25) DT(A8):DA(B24) DG(A9):DC(B23) DA(A10):DT(B22) DC(A11):DG(B21) DA(A12):DT(B20) DA(A13):DT(B19) DG(A14):DC(B18) chainC ( 2) ARG140 0 0 5 14 5 1 0 0 0 0 0 0 ( 36) SER174 0 0 0 0 0 0 5 9 3 0 0 0 ( 37) THR175 0 0 0 0 0 0 2 0 0 0 0 0 ( 39) TYR177 0 0 0 0 0 0 0 0 0 5 2 0 ( 40) ARG178 0 0 0 0 0 10 7 0 0 0 0 0 prot.sequence gRprainkheqeqisrllekghprqqlaiifgigvSTlYRyfpass >1jnm_A:A_DNA-binding_domain_in_eukaryotic_transcription_factors; title=CRYSTAL STRUCTURE OF THE JUN/CRE COMPLEX organism=Homo sapiens DNA sequence DC(D301):DG(C220) DG(D302):DC(C219) DT(D303):DA(C218) DC(D304):DG(C217) DG(D305):DC(C216) DA(D306):DT(C215) DT(D307):DA(C214) DG(D308):DC(C213) DA(D309):DT(C212) DC(D310):DG(C211) DG(D311):DC(C210) DT(D312):DA(C209) DC(D313):DG(C208) DA(D314):DT(C207) DT(D315):DA(C206) DC(D316):DG(C205) DG(D317):DC(C204) DA(D318):DT(C203) DC(D319):DG(C202) DG(D320):DC(C201) chainA ( 9) ASN262 0 0 0 0 0 2 8 6 5 0 0 0 0 0 0 0 0 0 0 0 ( 12) ALA265 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 13) ALA266 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 ( 16) SER269 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 17) ARG270 0 0 0 0 0 0 0 0 0 4 9 0 0 0 0 0 0 0 0 0 prot.sequence kaerKrmrNriAAskSRkrkleriarleekvktlkaqnselastanmlreqvaqlk >1jnm_AB: title=CRYSTAL STRUCTURE OF THE JUN/CRE COMPLEX organism=Homo sapiens DNA sequence DC(C201):DG(D320) DG(C202):DC(D319) DT(C203):DA(D318) DC(C204):DG(D317) DG(C205):DC(D316) DA(C206):DT(D315) DT(C207):DA(D314) DG(C208):DC(D313) DA(C209):DT(D312) DC(C210):DG(D311) DG(C211):DC(D310) DT(C212):DA(D309) DC(C213):DG(D308) DA(C214):DT(D307) DT(C215):DA(D306) DC(C216):DG(D305) DG(C217):DC(D304) DA(C218):DT(D303) DC(C219):DG(D302) DG(C220):DC(D301) chainA ( 9) ASN262 0 0 0 0 0 0 0 0 0 0 0 5 6 8 2 0 0 0 0 0 ( 12) ALA265 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 ( 13) ALA266 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 ( 16) SER269 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 ( 17) ARG270 0 0 0 0 0 0 0 0 0 9 4 0 0 0 0 0 0 0 0 0 chainB ( 9) ASN262 0 0 0 0 0 1 8 6 5 0 0 0 0 0 0 0 0 0 0 0 ( 12) ALA265 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 13) ALA266 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 ( 16) SER269 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 17) ARG270 0 0 0 0 0 0 0 0 4 8 11 0 0 0 0 0 0 0 0 0 prot.sequence kaerKrmrNriAAskSRkrkleriarleekvktlkaqnselastanmlreqvaqlk/kaerkrmrNriAAskSRkrkleriarleekvktlkaqnselastanmlreqvaqlkq >1jt0_ABCD: title=CRYSTAL STRUCTURE OF A COOPERATIVE QACR-DNA COMPLEX organism=STAPHYLOCOCCUS AUREUS DNA sequence DC(F7):DG(E34) DT(F8):DA(E33) DT(F9):DA(E32) DA(F10):DT(E31) DT(F11):DA(E30) DA(F12):DT(E29) DG(F13):DC(E28) DA(F14):DT(E27) DC(F15):DG(E26) DC(F16):DG(E25) DG(F17):DC(E24) DA(F18):DT(E23) DT(F19):DA(E22) DC(F20):DG(E21) DG(F21):DC(E20) DA(F22):DT(E19) DT(F23):DA(E18) DC(F24):DG(E17) DG(F25):DC(E16) DG(F26):DC(E15) DT(F27):DA(E14) DC(F28):DG(E13) DT(F29):DA(E12) DA(F30):DT(E11) DT(F31):DA(E10) DA(F32):DT(E9) DA(F33):DT(E8) DG(F34):DC(E7) chainA ( 24) THR25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 34) SER35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 ( 35) LYS36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 5 0 0 0 0 0 0 0 0 0 0 0 0 ( 37) ASN38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 ( 39) TYR40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 4 0 0 0 0 0 0 0 0 0 0 0 ( 40) TYR41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 9 0 0 0 0 0 0 0 chainB ( 24) THR25 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 34) SER35 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 35) LYS36 0 0 0 0 0 0 0 0 0 0 0 0 6 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 37) ASN38 0 0 0 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 39) TYR40 0 0 0 0 0 0 0 0 0 0 0 3 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 40) TYR41 0 0 0 0 0 0 0 7 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainC ( 24) THR25 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 34) SER35 0 0 0 0 0 5 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 35) LYS36 0 0 0 0 0 0 3 4 17 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 37) ASN38 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 39) TYR40 0 0 0 0 0 0 0 5 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 40) TYR41 0 0 0 10 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainD ( 24) THR25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 ( 34) SER35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 4 0 0 0 0 0 ( 35) LYS36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 17 4 2 0 0 0 0 0 0 ( 37) ASN38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 ( 39) TYR40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 5 0 0 0 0 0 0 0 ( 40) TYR41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 8 0 0 0 prot.sequence nlkdkilgvakelfikngynattTgeivklsesSKgNlYYhfktkenlfleilnieeskwqeqwkkeqikaktnrekfylynelsltteyyyplqnaiiefyteyyktnsinekmnklenkyidayhvifkegnlngewsindvnavskiaanavngivtftheqnineriklmnkfsqiflnglskh/nlkdkilgvakelfikngynattTgeivklsesSKgNlYYhfktkenlfleilnieeskwqeqwkkeqikaktnrekfylynelsltteyyyplqnaiiefyteyyktnsinekmnklenkyidayhvifkegnlngewsindvnavskiaanavngivtftheqnineriklmnkfsqiflnglskh/nlkdkilgvakelfikngynattTgeivklsesSKgNlYYhfktkenlfleilnieeskwqeqwkkeqikaktnrekfylynelsltteyyyplqnaiiefyteyyktnsinekmnklenkyidayhvifkegnlngewsindvnavskiaanavngivtftheqnineriklmnkfsqiflnglskh/nlkdkilgvakelfikngynattTgeivklsesSKgNlYYhfktkenlfleilnieeskwqeqwkkeqikaktnrekfylynelsltteyyyplqnaiiefyteyyktnsinekmnklenkyidayhvifkegnlngewsindvnavskiaanavngivtftheqnineriklmnkfsqiflngl >1jwl_AB: title=STRUCTURE OF THE DIMERIC LAC REPRESSOR/OPERATOR O1/ONPF COMPLEX organism=Escherichia coli DNA sequence DT(D6):DA(E19) DG(D7):DC(E18) DT(D8):DA(E17) DG(D9):DC(E16) DA(D10):DT(E15) DG(D11):DC(E14) DC(D12):DG(E13) DG(D13):DC(E12) DG(D14):DC(E11) DA(D15):DT(E10) DT(D16):DA(E9) DA(D17):DT(E8) DA(D18):DT(E7) DC(D19):DG(E6) chainA ( 17) GLN18 0 0 2 0 0 0 0 0 0 0 0 0 0 0 ( 28) HIS29 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 52) ALA53 0 0 0 0 0 0 1 0 0 0 0 0 0 0 ( 55) LEU56 0 0 0 0 0 0 1 0 0 0 0 0 0 0 ( 56) ALA57 0 0 0 0 0 1 1 0 0 0 0 0 0 0 chainB ( 17) GLN18 0 0 0 0 0 0 0 0 0 0 0 3 0 0 ( 28) HIS29 0 0 0 0 0 0 0 0 0 0 0 0 0 2 ( 52) ALA53 0 0 0 0 0 0 0 5 0 0 0 0 0 0 ( 55) LEU56 0 0 0 0 0 0 0 1 0 0 0 0 0 0 ( 56) ALA57 0 0 0 0 0 0 0 3 3 0 0 0 0 0 prot.sequence kpvtlydvaeyagvsyQtvsrvvnqasHvsaktrekveaamaelnyipnrvAqqLAgkqslligvatsslalhapsqivaaiksradqlgasvvvsmversgveacktavhnllaqrvsgliinyplddqdaiaveaactnvpalfldvsdqtpinsiifshedgtrlgvehlvalghqqiallagplssvsarlrlagwhkyltrnqiqpiaeregdwsamsgfqqtmqmlnegivptamlvandqmalgamraitesglrvgadisvvgyddtedsscyipplttikqdfrllgqtsvdrllqlsqgqavkgnqllpvslvkrkttl/kpvtlydvaeyagvsyQtvsrvvnqasHvsaktrekveaamaelnyipnrvAqqLAgkqslligvatsslalhapsqivaaiksradqlgasvvvsmversgveacktavhnllaqrvsgliinyplddqdaiaveaactnvpalfldvsdqtpinsiifshedgtrlgvehlvalghqqiallagplssvsarlrlagwhkyltrnqiqpiaeregdwsamsgfqqtmqmlnegivptamlvandqmalgamraitesglrvgadisvvgyddtedsscyipplttikqdfrllgqtsvdrllqlsqgqavkgnqllpvslvkrkttl >1jwl_B:Periplasmic_binding_protein-like_I;lambda_repressor-like_DNA-binding_domains; title=STRUCTURE OF THE DIMERIC LAC REPRESSOR/OPERATOR O1/ONPF COMPLEX organism=Escherichia coli DNA sequence DG(E6):DC(D19) DT(E7):DA(D18) DT(E8):DA(D17) DA(E9):DT(D16) DT(E10):DA(D15) DC(E11):DG(D14) DC(E12):DG(D13) DG(E13):DC(D12) DC(E14):DG(D11) DT(E15):DA(D10) DC(E16):DG(D9) DA(E17):DT(D8) DC(E18):DG(D7) DA(E19):DT(D6) chainB ( 17) GLN18 0 0 3 0 0 0 0 0 0 0 0 0 0 0 ( 28) HIS29 2 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 52) ALA53 0 0 0 0 0 0 5 0 0 0 0 0 0 0 ( 55) LEU56 0 0 0 0 0 0 1 0 0 0 0 0 0 0 ( 56) ALA57 0 0 0 0 0 3 3 0 0 0 0 0 0 0 prot.sequence kpvtlydvaeyagvsyQtvsrvvnqasHvsaktrekveaamaelnyipnrvAqqLAgkqslligvatsslalhapsqivaaiksradqlgasvvvsmversgveacktavhnllaqrvsgliinyplddqdaiaveaactnvpalfldvsdqtpinsiifshedgtrlgvehlvalghqqiallagplssvsarlrlagwhkyltrnqiqpiaeregdwsamsgfqqtmqmlnegivptamlvandqmalgamraitesglrvgadisvvgyddtedsscyipplttikqdfrllgqtsvdrllqlsqgqavkgnqllpvslvkrkttl >1jxl_A:DNA/RNA_polymerases;Lesion_bypass_DNA_polymerase_Y-family,_little_finger_domain; title=CRYSTAL STRUCTURE OF A Y-FAMILY DNA POLYMERASE IN A TERNARY COMPLEX WITH DNA SUBSTRATES AND AN INCOMING NUCLEOTIDE organism=Sulfolobus solfataricus DNA sequence DC(T3):DG3(A401) DA(T5):DT(P12) DA(T6):DT(P11) BRU(T7):DA(P10) DC(T8):DG(P9) DC(T9):DG(P8) DT(T10):DA(P7) BRU(T11):DA(P6) DC(T12):DG(P5) DC(T13):DG(P4) DC(T14):DG(P3) DC(T15):DG(P2) DC(T16):DG(P1) chainA ( 7) ASP7 3 0 0 0 0 0 0 0 0 0 0 0 0 ( 10) TYR10 5 0 0 0 0 0 0 0 0 0 0 0 0 ( 11) PHE11 1 0 0 0 0 0 0 0 0 0 0 0 0 ( 32) VAL32 3 0 0 0 0 0 0 0 0 0 0 0 0 ( 42) ALA42 6 0 0 0 0 0 0 0 0 0 0 0 0 ( 44) ALA44 3 0 0 0 0 0 0 0 0 0 0 0 0 ( 45) THR45 4 0 0 0 0 0 0 0 0 0 0 0 0 ( 51) ARG51 7 0 0 0 0 0 0 0 0 0 0 0 0 ( 57) ALA57 5 0 0 0 0 0 0 0 0 0 0 0 0 (105) ASP105 5 0 0 0 0 0 0 0 0 0 0 0 0 (106) GLU106 3 0 0 0 0 0 0 0 0 0 0 0 0 (159) LYS159 2 0 0 0 0 0 0 0 0 0 0 0 0 (244) SER244 0 0 0 1 0 0 0 0 0 0 0 0 0 (336) ARG336 0 0 3 2 0 0 0 0 0 0 0 0 0 prot.sequence mivlfvdfdyfyaqveevlnpslkgkpvvvcVfsgrfedsgAvatanyearkfgvkagipiveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyreaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldiadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtrvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgrtfphgisketaysesvkllqkileederkirrigvRfskfi >1k3w_A:N-terminal_domain_of_MutM-like_DNA_repair_proteins;S13-like_H2TH_domain;Glucocorticoid_receptor-like_DNA-binding_domain; title=CRYSTAL STRUCTURE OF A TRAPPED REACTION INTERMEDIATE OF THE DNA REPAIR ENZYME ENDONUCLEASE VIII WITH DNA organism=Escherichia coli DNA sequence DT(B405):DA(C429) DC(B406):DG(C428) DT(B408):DA(C426) DC(B409):DG(C425) DC(B410):DG(C424) DT(B411):DA(C423) DG(B412):DC(C422) chainA ( 69) GLN69 0 19 0 0 0 0 0 ( 70) LEU70 0 12 10 0 0 0 0 ( 71) TYR71 0 0 12 0 0 0 0 (244) ARG252 0 6 0 0 0 0 0 prot.sequence pegpeirraadnleaaikgkpltdvwfafpqlktyqsqligqhvthvetrgkallthfsndltlyshnQLYgvwrvvdtgeepqttrvlrvklqtadktillysasdiemlrpeqltthpflqrvgpdvldpnltpevvkerllsprfrnrqfagllldqaflaglgnylrveilwqvgltgnhkakdlnaaqldalahalleiprfsyatrgqalfrfkvfhrdgepcercgsiiekttlssRpfywcpgcqh >1k61_ABCD: title=MATALPHA2 HOMEODOMAIN BOUND TO DNA organism=? DNA sequence DG(F23):DC(E21) DC(F24):DG(E20) DG(F25):DC(E19) DT(F26):DA(E18) DG(F27):DC(E17) DT(F28):DA(E16) DA(F29):DT(E15) DA(F30):DT(E14) DA(F31):DT(E13) DT(F32):DA(E12) DG(F33):DC(E11) DA(F34):DT(E10) DA(F35):DT(E9) DT(F36):DA(E8) DT(F37):DA(E7) DA(F38):DT(E6) DC(F39):DG(E5) DA(F40):DT(E4) DT(F41):DA(E3) DG(F42):DC(E2) chainA ( 3) HIS134 0 0 0 0 0 0 4 7 5 0 0 0 0 0 0 0 0 0 0 0 ( 4) ARG135 0 0 0 0 0 0 0 1 2 2 0 0 0 0 0 0 0 0 0 0 ( 47) ASN178 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 50) SER181 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 51) ASN182 0 0 0 0 0 9 7 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 54) ARG185 0 0 0 14 14 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 3) HIS134 0 0 0 0 0 0 0 0 0 0 0 0 4 3 1 0 0 0 0 0 ( 4) ARG135 0 0 0 0 0 0 0 0 0 0 0 6 9 0 0 0 0 0 0 0 ( 47) ASN178 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 4 0 0 0 ( 50) SER181 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 ( 51) ASN182 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 9 0 0 0 0 ( 54) ARG185 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 13 14 0 0 chainC ( 45) ASN178 7 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 49) ASN182 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 52) ARG185 7 5 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainD ( 1) ARG132 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 5 0 0 0 0 ( 43) ILE174 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 ( 46) LYS177 0 0 0 0 0 0 0 0 0 0 6 1 0 0 0 0 0 0 0 0 ( 47) ASN178 0 0 0 0 0 0 0 0 0 0 0 0 0 11 11 0 0 0 0 0 ( 51) ASN182 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 prot.sequence rgHRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvSNrrRkektit/rgHRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvSNrrRkekti/hrftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvsNrrRkekt/RghrftkenvrileswfaknienpyldtkglenlmkntslsrIqiKNwvSNrrrkekt >1k6o_ABC: title=CRYSTAL STRUCTURE OF A TERNARY SAP-1/SRF/C-FOS SRE DNA COMPLEX organism=HOMO SAPIENS DNA sequence DC(D101):DG(E223) DA(D102):DT(E222) DC(D103):DG(E221) DA(D104):DT(E220) DG(D105):DC(E219) DG(D106):DC(E218) DA(D107):DT(E217) DT(D108):DA(E216) DG(D109):DC(E215) DT(D110):DA(E214) DC(D111):DG(E213) DC(D112):DG(E212) DA(D113):DT(E211) DT(D114):DA(E210) DA(D115):DT(E209) DT(D116):DA(E208) DT(D117):DA(E207) DA(D118):DT(E206) DG(D119):DC(E205) DG(D120):DC(E204) DA(D121):DT(E203) DC(D122):DG(E202) DA(D123):DT(E201) chainA ( 56) LYS358 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 59) ARG361 0 0 0 0 25 19 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 62) ARG364 0 0 2 15 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 63) TYR365 0 0 0 0 0 2 6 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 4) THR140 0 0 0 0 0 0 0 0 0 0 2 8 0 0 0 0 0 0 0 0 0 0 0 ( 7) ARG143 0 0 0 0 0 0 0 0 0 0 0 0 7 10 7 0 0 0 0 0 0 0 0 ( 26) SER162 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 27) LYS163 0 0 0 0 0 0 0 0 0 7 4 5 0 0 0 0 0 0 0 0 0 0 0 chainC ( 3) THR140 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 3 0 0 0 ( 6) ARG143 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 10 6 2 0 0 0 0 ( 21) TYR158 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 ( 26) LYS163 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 6 0 0 prot.sequence saitlwqfllqllqkpqnkhmicwtsndgqfkllqaeevarlwgirknkpnmnydKlsRalRYyyvkniikkvngqkfvykfvsypeil/gkkTrgRvkikmefidnklrryttfSKrktgimkkayelstltgtqvlllvasetghvytfatrklqpmitsetgkaliqtclns/kkTrgRvkikmefidnklrrYttfsKrktgimkkayelstltgtqvlllvasetghvytfatrklqpmitsetgkaliqtclns >1k6o_C:SRF-like; title=CRYSTAL STRUCTURE OF A TERNARY SAP-1/SRF/C-FOS SRE DNA COMPLEX organism=HOMO SAPIENS DNA sequence DT(E201):DA(D123) DG(E202):DC(D122) DT(E203):DA(D121) DC(E204):DG(D120) DC(E205):DG(D119) DT(E206):DA(D118) DA(E207):DT(D117) DA(E208):DT(D116) DT(E209):DA(D115) DA(E210):DT(D114) DT(E211):DA(D113) DG(E212):DC(D112) DG(E213):DC(D111) DA(E214):DT(D110) DC(E215):DG(D109) DA(E216):DT(D108) DT(E217):DA(D107) DC(E218):DG(D106) DC(E219):DG(D105) DT(E220):DA(D104) DG(E221):DC(D103) DT(E222):DA(D102) DG(E223):DC(D101) chainC ( 3) THR140 0 0 0 3 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 6) ARG143 0 0 0 0 2 6 10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 21) TYR158 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 26) LYS163 0 0 6 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence kkTrgRvkikmefidnklrrYttfsKrktgimkkayelstltgtqvlllvasetghvytfatrklqpmitsetgkaliqtclns >1k78_A:Homeodomain-like; title=PAX5(1-149)+ETS-1(331-440)+DNA organism=HOMO SAPIENS DNA sequence DG(H3):DC(G27) DG(H4):DC(G26) DC(H5):DG(G25) DC(H6):DG(G24) DA(H7):DT(G23) DC(H8):DG(G22) DT(H9):DA(G21) DG(H10):DC(G20) DG(H11):DC(G19) DA(H12):DT(G18) DG(H13):DC(G17) DC(H14):DG(G16) DC(H15):DG(G15) DC(H16):DG(G14) DA(H17):DT(G13) DT(H18):DA(G12) DC(H19):DG(G11) DT(H20):DA(G10) DC(H21):DG(G9) DC(H22):DG(G8) DG(H23):DC(G7) DG(H24):DC(G6) DC(H25):DG(G5) DA(H26):DT(G4) DC(H27):DG(G3) DA(D2):DT(G1) DG(D3):DC(C27) DG(D4):DC(C26) DC(D5):DG(C25) DC(D6):DG(C24) DA(D7):DT(C23) DC(D8):DG(C22) DT(D9):DA(C21) DG(D10):DC(C20) DG(D11):DC(C19) DA(D12):DT(C18) DG(D13):DC(C17) DC(D14):DG(C16) DC(D15):DG(C15) DC(D16):DG(C14) DA(D17):DT(C13) DT(D18):DA(C12) DC(D19):DG(C11) DT(D20):DA(C10) DC(D21):DG(C9) DC(D22):DG(C8) DG(D23):DC(C7) DG(D24):DC(C6) DC(D25):DG(C5) DA(D26):DT(C4) DC(D27):DG(C3) chainA ( 11) ASN29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 43) SER61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 ( 44) HIS62 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 9 15 0 0 0 0 0 0 0 ( 48) SER66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 49) LYS67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 ( 65) ILE83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 68) SER86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (113) SER131 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (115) SER133 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 6 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (116) SER134 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (118) ASN136 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (119) ARG137 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence gvnqlggvfvngrplpdvvrqrivelahqgvrpcdisrqlrvshgcvskilgryyetgsikpgviggskpkvatpkvvekiaeykrqnptmfaweirdrllaervcdndtvpsvssinriirtk >1k78_BI:Homeodomain-like; title=PAX5(1-149)+ETS-1(331-440)+DNA organism=MUS MUSCULUS / HOMO SAPIENS DNA sequence DG(C3):DC(D27) DT(C4):DA(D26) DG(C5):DC(D25) DC(C6):DG(D24) DC(C7):DG(D23) DG(C8):DC(D22) DG(C9):DC(D21) DA(C10):DT(D20) DG(C11):DC(D19) DA(C12):DT(D18) DT(C13):DA(D17) DG(C14):DC(D16) DG(C15):DC(D15) DG(C16):DC(D14) DC(C17):DG(D13) DT(C18):DA(D12) DC(C19):DG(D11) DC(C20):DG(D10) DA(C21):DT(D9) DG(C22):DC(D8) DT(C23):DA(D7) DG(C24):DC(D6) DG(C25):DC(D5) DC(C26):DG(D4) DC(C27):DG(D3) chainB ( 54) LYS388 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 57) ARG391 0 0 0 0 0 24 16 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 60) ARG394 0 0 0 0 17 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 61) TYR395 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainI ( 3) SER86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 1 0 0 0 ( 48) SER131 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 ( 50) SER133 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 3 0 0 0 0 0 0 0 ( 54) ARG137 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 14 10 0 0 0 0 0 0 ( 57) ARG140 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 prot.sequence iqlwqfllelltdkscqsfiswtgdgwefklsdpdevarrwgkrknkpkmnyEKlsRglRYyydkniihktagkryvyrfvcdlqsllgytpeelhamldvk/ggSkpkvatpkvvekiaeykrqnptmfaweirdrllaervcdndtvpSvSsinRiiRt >1k78_EF:Homeodomain-like; title=PAX5(1-149)+ETS-1(331-440)+DNA organism=MUS MUSCULUS / HOMO SAPIENS DNA sequence DG(H3):DC(G27) DG(H4):DC(G26) DC(H5):DG(G25) DC(H6):DG(G24) DA(H7):DT(G23) DC(H8):DG(G22) DT(H9):DA(G21) DG(H10):DC(G20) DG(H11):DC(G19) DA(H12):DT(G18) DG(H13):DC(G17) DC(H14):DG(G16) DC(H15):DG(G15) DC(H16):DG(G14) DA(H17):DT(G13) DT(H18):DA(G12) DC(H19):DG(G11) DT(H20):DA(G10) DC(H21):DG(G9) DC(H22):DG(G8) DG(H23):DC(G7) DG(H24):DC(G6) DC(H25):DG(G5) DA(H26):DT(G4) DC(H27):DG(G3) chainE ( 11) ASN29 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 43) SER61 0 0 0 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 ( 44) HIS62 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 9 15 0 0 0 0 0 0 0 ( 48) SER66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 49) LYS67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 ( 65) ILE83 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 68) SER86 0 0 0 0 0 0 6 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (113) SER131 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (115) SER133 0 1 7 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (119) ARG137 0 0 0 1 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainF ( 54) GLU387 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 55) LYS388 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 ( 58) ARG391 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 18 25 0 0 0 0 0 ( 61) ARG394 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 17 0 0 0 0 ( 62) TYR395 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 prot.sequence gvnqlggvfvNgrplpdvvrqrivelahqgvrpcdisrqlrvSHgcvSKilgryyetgsikpgvIggSkpkvatpkvvekiaeykrqnptmfaweirdrllaervcdndtvpSvSsinRiirtk/piqlwqfllelltdkscqsfiswtgdgwefklsdpdevarrwgkrknkpkmnyEKlsRglRYyydkniihktagkryvyrfvcdlqsllgytpeelhamldvk >1k79_D:"Winged_helix"_DNA-binding_domain; title=ETS-1(331-440)+GGAA DUPLEX organism=Mus musculus DNA sequence DA(E2):DT(F15) DG(E3):DC(F14) DT(E4):DA(F13) DG(E5):DC(F12) DC(E6):DG(F11) DC(E7):DG(F10) DG(E8):DC(F9) DG(E9):DC(F8) DA(E10):DT(F7) DA(E11):DT(F6) DA(E12):DT(F5) DT(E13):DA(F4) DG(E14):DC(F3) DT(E15):DA(F2) chainD ( 56) LYS388 0 0 0 0 0 0 0 0 4 0 0 0 0 0 ( 59) ARG391 0 0 0 0 0 0 26 17 4 1 0 0 0 0 ( 62) ARG394 0 0 0 0 0 13 13 0 0 0 0 0 0 0 ( 63) TYR395 0 0 0 0 0 0 0 1 6 8 8 0 0 0 prot.sequence gpiqlwqfllelltdkscqsfiswtgdgwefklsdpdevarrwgkrknkpkmnyeKlsRglRYyydkniihktagkryvyrfvcdlqsllgytpeelhamldvk >1k7a_A:"Winged_helix"_DNA-binding_domain; title=ETS-1(331-440)+GGAG DUPLEX organism=Mus musculus DNA sequence DA(B2):DT(C15) DG(B3):DC(C14) DT(B4):DA(C13) DG(B5):DC(C12) DC(B6):DG(C11) DC(B7):DG(C10) DG(B8):DC(C9) DG(B9):DC(C8) DA(B10):DT(C7) DG(B11):DC(C6) DA(B12):DT(C5) DT(B13):DA(C4) DG(B14):DC(C3) chainA ( 56) LYS388 0 0 0 0 0 0 0 0 4 0 0 0 0 ( 59) ARG391 0 0 0 0 0 0 24 12 8 0 0 0 0 ( 62) ARG394 0 0 0 0 0 14 16 0 0 0 0 0 0 ( 63) TYR395 0 0 0 0 0 0 0 0 6 7 13 0 0 prot.sequence gpiqlwqfllelltdkscqsfiswtgdgwefklsdpdevarrwgkrknkpkmnyeKlsRglRYyydkniihktagkryvyrfvcdlqsllgytpeelhamldvk >1kb2_AB: title=CRYSTAL STRUCTURE OF VDR DNA-BINDING DOMAIN BOUND TO MOUSE OSTEOPONTIN (SPP) RESPONSE ELEMENT organism=Homo sapiens DNA sequence DT(D419):DA(C418) DG(D420):DC(C417) DA(D421):DT(C416) DA(D422):DT(C415) DC(D423):DG(C414) DC(D424):DG(C413) DT(D425):DA(C412) DC(D426):DG(C411) DG(D427):DC(C410) DT(D428):DA(C409) DG(D429):DC(C408) DA(D430):DT(C407) DA(D431):DT(C406) DC(D432):DG(C405) DC(D433):DG(C404) DG(D434):DC(C403) DT(D435):DA(C402) DG(D436):DC(C401) chainA ( 21) GLU42 0 0 0 0 0 0 0 0 0 0 0 1 4 2 0 0 0 0 ( 24) LYS45 0 0 0 0 0 0 0 0 0 0 0 0 0 6 1 0 0 0 ( 28) ARG49 0 0 0 0 0 0 0 0 0 0 0 0 3 2 0 0 0 0 ( 29) ARG50 0 0 0 0 0 0 0 0 0 8 7 0 0 0 0 0 0 0 ( 82) LYS103 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 chainB ( 21) GLU242 0 0 7 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 24) LYS245 0 0 0 0 6 1 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) ARG249 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) ARG250 8 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence ricgvcgdratgfhfnamtcEgcKgffRRsmkrkalftcpfngdcritkdnrrhcqacrlkrcvdigmmkefiltdeevqrKremilkr/ricgvcgdratgfhfnamtcEgcKgffRRsmkrkalftcpfngdcritkdnrrhcqacrlkrcvdigmmkefiltdeevqrkrem >1kb4_A:Glucocorticoid_receptor-like_DNA-binding_domain; title=CRYSTAL STRUCTURE OF VDR DNA-BINDING DOMAIN BOUND TO A CANONICAL DIRECT REPEAT WITH THREE BASE PAIR SPACER (DR3) RESPONSE ELEMENT organism=Homo sapiens DNA sequence DC(C401):DG(D436) DA(C402):DT(D435) DC(C403):DG(D434) DA(C404):DT(D433) DG(C405):DC(D432) DG(C406):DC(D431) DT(C407):DA(D430) DC(C408):DG(D429) DA(C409):DT(D428) DC(C410):DG(D427) DG(C411):DC(D426) DA(C412):DT(D425) DA(C413):DT(D424) DG(C414):DC(D423) DG(C415):DC(D422) DT(C416):DA(D421) DC(C417):DG(D420) DA(C418):DT(D419) chainA ( 21) GLU42 0 0 0 0 0 7 3 0 0 0 0 0 0 0 0 0 0 0 ( 24) LYS45 0 0 0 0 8 1 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) ARG49 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) ARG50 0 0 0 0 0 0 0 6 11 0 0 0 0 0 0 0 0 0 ( 82) LYS103 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence ricgvcgdratgfhfnamtcEgcKgffRRsmkrkalftcpfngdcritkdnrrhcqacrlkrcvdigmmkefiltdeevqrKremilkrkeee >1kb4_AB: title=CRYSTAL STRUCTURE OF VDR DNA-BINDING DOMAIN BOUND TO A CANONICAL DIRECT REPEAT WITH THREE BASE PAIR SPACER (DR3) RESPONSE ELEMENT organism=Homo sapiens DNA sequence DT(D419):DA(C418) DG(D420):DC(C417) DA(D421):DT(C416) DC(D422):DG(C415) DC(D423):DG(C414) DT(D424):DA(C413) DT(D425):DA(C412) DC(D426):DG(C411) DG(D427):DC(C410) DT(D428):DA(C409) DG(D429):DC(C408) DA(D430):DT(C407) DC(D431):DG(C406) DC(D432):DG(C405) DT(D433):DA(C404) DG(D434):DC(C403) DT(D435):DA(C402) DG(D436):DC(C401) chainA ( 21) GLU42 0 0 0 0 0 0 0 0 0 0 0 3 7 0 0 0 0 0 ( 24) LYS45 0 0 0 0 0 0 0 0 0 0 0 0 1 8 0 0 0 0 ( 28) ARG49 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 ( 29) ARG50 0 0 0 0 0 0 0 0 0 11 6 0 0 0 0 0 0 0 ( 82) LYS103 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 chainB ( 21) GLU242 0 0 4 9 2 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 24) LYS245 0 0 0 0 6 1 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) ARG249 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) ARG250 7 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence ricgvcgdratgfhfnamtcEgcKgffRRsmkrkalftcpfngdcritkdnrrhcqacrlkrcvdigmmkefiltdeevqrKremilkrkeee/ricgvcgdratgfhfnamtcEgcKgffRRsmkrkalftcpfngdcritkdnrrhcqacrlkrcvdigmmkefiltdeevqrkremilkrkeeealkdsl >1kb6_A:Glucocorticoid_receptor-like_DNA-binding_domain; title=CRYSTAL STRUCTURE OF VDR DNA-BINDING DOMAIN BOUND TO RAT OSTEOCALCIN (OC) RESPONSE ELEMENT organism=Homo sapiens DNA sequence DT(D419):DA(C418) DG(D420):DC(C417) DT(D421):DA(C416) DC(D422):DG(C415) DC(D423):DG(C414) DT(D424):DA(C413) DC(D425):DG(C412) DA(D426):DT(C411) DT(D427):DA(C410) DT(D428):DA(C409) DC(D429):DG(C408) DA(D430):DT(C407) DC(D431):DG(C406) DC(D432):DG(C405) DC(D433):DG(C404) DG(D434):DC(C403) DT(D435):DA(C402) DG(D436):DC(C401) chainA ( 22) GLU42 0 0 0 0 0 0 0 0 0 0 0 5 8 0 0 0 0 0 ( 25) LYS45 0 0 0 0 0 0 0 0 0 0 0 0 2 7 0 0 0 0 ( 29) ARG49 0 0 0 0 0 0 0 0 0 0 0 0 3 6 0 0 0 0 ( 30) ARG50 0 0 0 0 0 0 0 0 2 4 0 0 0 0 0 0 0 0 ( 83) LYS103 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 prot.sequence pricgvcgdratgfhfnamtcEgcKgffRRsmkrkalftcpfngdcritkdnrrhcqacrlkrcvdigmmkefiltdeevqrKremilkrkeee >1kb6_AB: title=CRYSTAL STRUCTURE OF VDR DNA-BINDING DOMAIN BOUND TO RAT OSTEOCALCIN (OC) RESPONSE ELEMENT organism=Homo sapiens DNA sequence DT(D419):DA(C418) DG(D420):DC(C417) DT(D421):DA(C416) DC(D422):DG(C415) DC(D423):DG(C414) DT(D424):DA(C413) DC(D425):DG(C412) DA(D426):DT(C411) DT(D427):DA(C410) DT(D428):DA(C409) DC(D429):DG(C408) DA(D430):DT(C407) DC(D431):DG(C406) DC(D432):DG(C405) DC(D433):DG(C404) DG(D434):DC(C403) DT(D435):DA(C402) DG(D436):DC(C401) chainA ( 22) GLU42 0 0 0 0 0 0 0 0 0 0 0 5 8 0 0 0 0 0 ( 25) LYS45 0 0 0 0 0 0 0 0 0 0 0 0 2 7 0 0 0 0 ( 29) ARG49 0 0 0 0 0 0 0 0 0 0 0 0 3 6 0 0 0 0 ( 30) ARG50 0 0 0 0 0 0 0 0 2 4 0 0 0 0 0 0 0 0 ( 83) LYS103 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 chainB ( 22) GLU242 0 0 3 10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) LYS245 0 0 0 0 6 4 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) ARG249 0 0 0 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 30) ARG250 8 8 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence pricgvcgdratgfhfnamtcEgcKgffRRsmkrkalftcpfngdcritkdnrrhcqacrlkrcvdigmmkefiltdeevqrKremilkrkeee/pricgvcgdratgfhfnamtcEgcKgffRRsmkrkalftcpfngdcritkdnrrhcqacrlkrcvdigmmkefiltdeevqrkremilkrkeeealkdslr >1kbu_AB:DNA_breaking-rejoining_enzymes;lambda_integrase-like,_N-terminal_domain; title=CRE RECOMBINASE BOUND TO A LOXP HOLLIDAY JUNCTION organism=Enterobacteria phage P1 DNA sequence DA(D1):DT(C34) DT(D2):DA(C33) DA(D3):DT(C32) DA(D4):DT(C31) DC(D5):DG(C30) DT(D6):DA(C29) DT(D7):DA(C28) DC(D8):DG(C27) DG(D9):DC(C26) DT(D10):DA(C25) DA(D11):DT(C24) DT(D12):DA(C23) DA(D13):DT(C22) DG(D14):DC(C21) DC(D15):DG(C20) DA(D18):DT(C19) DC(D19):DG(C16) DA(D20):DT(C15) DT(D21):DA(C14) DT(D22):DA(C13) DA(D23):DT(C12) DT(D24):DA(C11) DA(D25):DT(C10) DC(D26):DG(C9) DG(D27):DC(C8) DA(D28):DT(C7) DA(D29):DT(C6) DC(D30):DG(C5) DT(D31):DA(C4) DT(D32):DA(C3) DA(D33):DT(C2) DT(D34):DA(C1) chainA ( 27) MET44 0 0 0 0 0 0 0 0 0 6 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 30) SER47 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 70) THR87 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 73) GLN90 0 0 0 0 0 0 0 0 0 0 0 8 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (224) ARG241 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (227) LYS244 1 6 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (240) SER257 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (242) ARG259 0 0 0 0 0 2 8 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (265) ARG282 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 22) HIS40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 6 0 0 0 0 0 0 0 0 0 0 ( 23) THR41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) LYS43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 9 1 0 0 0 0 0 0 0 ( 26) MET44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 6 3 0 0 0 0 0 0 0 0 0 ( 29) SER47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 ( 68) LYS86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 7 6 0 0 0 0 0 0 0 0 0 0 0 0 ( 69) THR87 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 ( 72) GLN90 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 9 15 0 0 0 0 0 0 0 0 0 0 0 ( 76) GLN94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 (103) ARG121 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (183) LYS201 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 6 6 0 0 0 0 0 0 0 0 0 0 0 0 (223) ARG241 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 (225) ARG243 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 5 0 (226) LYS244 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 6 5 (239) SER257 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 (241) ARG259 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 17 12 1 0 0 0 0 0 (244) GLU262 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 5 0 0 0 0 0 0 0 0 (264) ARG282 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 8 0 0 0 0 0 0 0 0 0 prot.sequence atsdevrknlmdmfrdrqafsehtwkMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavkTiqQhlgqlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmlihigrtktlvstagvekalslgvtklverwisvsgvaddpnnylfcRvrKngvaapsatsqlStRalegifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtnvnivmnyirnldsetgamvrlled/tsdevrknlmdmfrdrqafseHTwKMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiQQhlgQlnmlhrrsglprpsdsnavslvmrriRkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmlihigrtKtlvstagvekalslgvtklverwisvsgvaddpnnylfcRvRKngvaapsatsqlStRalEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtnvnivmnyirnlgamvrlled >1kc6_A:Restriction_endonuclease-like; title=HINCII BOUND TO COGNATE DNA organism=Haemophilus influenzae DNA sequence DC(F2):DG(E13) DC(F3):DG(E12) DG(F4):DC(E11) DG(F5):DC(E10) DT(F6):DA(E9) DC(F7):DG(E8) DG(F8):DC(E7) DA(F9):DT(E6) DC(F10):DG(E5) DC(F11):DG(E4) DG(F12):DC(E3) DG(F13):DC(E2) chainA (100) GLN109 0 0 0 2 6 7 0 0 0 0 0 0 (101) ASN110 0 0 0 1 2 0 0 0 0 0 0 0 (128) ALA137 0 0 0 0 0 0 0 0 1 0 0 0 (129) GLN138 0 0 0 0 0 0 0 0 24 42 0 0 (131) PRO140 0 0 0 0 0 0 0 2 1 0 0 0 (132) ASN141 0 0 0 0 0 3 7 15 0 0 0 0 (190) TYR199 0 0 0 0 0 0 0 0 0 4 0 0 (192) ASN201 0 0 0 0 0 0 0 0 9 2 0 0 (194) ALA203 0 0 0 0 0 0 0 1 0 0 0 0 (195) ALA204 0 0 0 0 0 0 0 3 3 0 0 0 (196) ALA205 0 0 0 0 3 3 0 0 0 0 0 0 (198) GLN207 0 0 0 0 0 2 0 0 0 0 0 0 (200) GLN209 0 0 0 0 0 0 0 1 6 0 0 0 prot.sequence sfikpiyqdinsiligqkvkrpaagepfeklvykflkenlsdltfkqyeylndlfmknpaiighearyklfnsptllfllsrgkaatenwsienlfeekQNdtadillvkdqfyelldvktrnisksAQaPNiisayklaqtcakmidnkefdlfdinylevdwelngedlvcvstsfaelfksepselYiNwAAAmQiQfhvrdldqgfngtreewaksylkhfvtqaeqraismidkfvkpfkkyil >1kc6_CD:Restriction_endonuclease-like; title=HINCII BOUND TO COGNATE DNA organism=Haemophilus influenzae DNA sequence DC(G2):DG(H13) DC(G3):DG(H12) DG(G4):DC(H11) DG(G5):DC(H10) DT(G6):DA(H9) DC(G7):DG(H8) DG(G8):DC(H7) DA(G9):DT(H6) DC(G10):DG(H5) DC(G11):DG(H4) DG(G12):DC(H3) DG(G13):DC(H2) chainC ( 86) GLN109 0 0 0 0 0 0 4 4 3 0 0 0 (114) GLN138 0 0 32 23 0 0 0 0 0 0 0 0 (116) PRO140 0 0 0 1 2 0 0 0 0 0 0 0 (117) ASN141 0 0 0 0 13 8 2 0 0 0 0 0 (177) ASN201 0 0 0 8 0 0 0 0 0 0 0 0 (179) ALA203 0 0 0 0 1 0 0 0 0 0 0 0 (180) ALA204 0 0 0 3 4 0 0 0 0 0 0 0 (181) ALA205 0 0 0 0 0 0 2 5 0 0 0 0 (183) GLN207 0 0 0 0 0 0 1 0 0 0 0 0 (185) GLN209 0 0 0 6 1 0 0 0 0 0 0 0 chainD ( 94) GLN109 0 0 0 0 3 3 0 0 0 0 0 0 ( 95) ASN110 0 0 0 1 1 0 0 0 0 0 0 0 (123) GLN138 0 0 0 0 0 0 0 0 30 38 0 0 (125) PRO140 0 0 0 0 0 0 0 2 0 0 0 0 (126) ASN141 0 0 0 0 0 1 7 16 0 0 0 0 (178) TYR199 0 0 0 0 0 0 0 0 0 4 0 0 (180) ASN201 0 0 0 0 0 0 0 0 9 1 0 0 (182) ALA203 0 0 0 0 0 0 0 1 0 0 0 0 (183) ALA204 0 0 0 0 0 0 0 3 3 0 0 0 (184) ALA205 0 0 0 0 4 2 0 0 0 0 0 0 (186) GLN207 0 0 0 0 0 3 0 0 0 0 0 0 (188) GLN209 0 0 0 0 0 0 0 1 6 0 0 0 prot.sequence sfikpiyqdinsiligqkvkagepfeklvykflkenlsdltfkqyeylndlfhearyklfnsptllfllsrgkaatenwsifeekQndtadillvkqfyelldvktrnisksaQaPNiisayklaqtcakmidnkefdlfdinylevdwelngedlvcvstsfaelfksepselyiNwAAAmQiQfhvrdldqgfngtreewaksylkhfvtqaeqraismidkfvkpfkkyi/sfikpiyqdinsiligqkgepfeklvykflkenlsdltfkqyeylndlfmknpaiighearyklfnsptllfllsrgkaatenwsienlfeekQNdtadillvkdqfyelldvktrnisksaQaPNiisayklaqtcakmidnkefdlfdinylevdwlvcvstsfaelfksepselYiNwAAAmQiQfhvrdldqgfngtreewaksylkhfvtqaeqraismidkfvkpfkkyi >1kfv_B:N-terminal_domain_of_MutM-like_DNA_repair_proteins;S13-like_H2TH_domain;Glucocorticoid_receptor-like_DNA-binding_domain; title=CRYSTAL STRUCTURE OF LACTOCOCCUS LACTIS FORMAMIDO-PYRIMIDINE DNA GLYCOSYLASE (ALIAS FPG OR MUTM) NON COVALENTLY BOUND TO AN AP SITE CONTAINING DNA. organism=Lactococcus lactis DNA sequence DC(G1):DG(H26) DT(G2):DA(H25) DC(G3):DG(H24) DT(G4):DA(H23) DT(G5):DA(H22) DT(G6):DA(H21) PDI(G7):DC(H20) DT(G8):DA(H19) DT(G9):DA(H18) DT(G10):DA(H17) DC(G11):DG(H16) DT(G12):DA(H15) DC(G13):DG(H14) chainB ( 2) GLU2 0 0 0 0 0 0 7 0 0 0 0 0 0 ( 74) ARG74 0 0 0 0 0 0 0 10 4 0 0 0 0 ( 75) MET75 0 0 0 0 0 0 3 15 0 0 0 0 0 (109) ARG109 0 0 0 0 0 60 14 0 0 0 0 0 0 (111) PHE111 0 0 0 0 0 0 10 31 0 0 0 0 0 (171) ASN171 0 0 0 0 0 0 5 0 0 0 0 0 0 (172) ILE172 0 0 0 0 0 0 4 0 0 0 0 0 0 (227) TYR238 0 0 0 0 0 0 3 0 0 0 0 0 0 (249) ARG260 0 0 0 0 0 0 1 8 2 0 0 0 0 prot.sequence gelpevetvrrelekrivgqkiisieatyprmvltgfeqlkkeltgktiqgisrrgkylifeigddfrlishlRMegkyrlatldaprekhdhltmkfadgqliyadvRkFgtwelistdqvlpyflkkkigpeptyedfdeklfreklrkstkkikpylleqtlvaglgniyvdevlwlakihpeketnqliessihllhdsiieilqkaiklggsgkmqnelqvygktgekcsrcgaeiqkikvagRgthfcpvcqqk >1kln_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7) MUTANT/DNA COMPLEX organism=ESCHERICHIA COLI DNA sequence DG(B2):DC(C29) DC(B3):DG(C28) DC(B4):DG(C27) DT(B5):DA(C26) DC(B6):DG(C25) DG(B7):DC(C24) DC(B8):DG(C23) DG(B9):DC(C21) DG(B10):DC(C20) DC(B11):DG(C19) chainA (132) ARG455 0 0 0 0 0 0 0 0 0 7 (330) VAL663 0 0 0 0 0 0 0 0 0 2 prot.sequence visydnyvtildeetlkawiaklekapvfafatetdsldnisanlvglsfaiepgvaayipvahdyldapdqisreralellkplledekalkvgqnlkydrgilanygielrgiafdtmlesyilnsvagRhdmdslaerwlkhktitfeeiagkgknqltfnqialeeagryaaedadvtlqlhlkmwpdlqkhkgplnvfeniemplvpvlsrierngvkidpkvlhnhseeltlrlaelekkaheiageefnlssqlqtilfekqgikplktseevleelaldyplpkvileyrglaklkstytdklplminpktgrvhtsyhqaVtatgrlsstdpnlqnipvrneegrrirqafiapedyvivsadysqielrimahlsrdkglltafaegkdihrataaevfglpletvtseqrrsakainfgliygmsafglarqlniprkeaqkymdlyferypgvleymertraqakeqgyvetldgrrlylpdikssngarraaaeraainapmqgtaadiikramiavdawlqaeqprvrmimqvhdelvfevhkddvdavakqihqlmenctrldvpllvevgsgenwdqah >1ksx_ABEF: title=CRYSTAL STRUCTURES OF TWO INTERMEDIATES IN THE ASSEMBLY OF THE PAPILLOMAVIRUS REPLICATION INITIATION COMPLEX organism=Bovine papillomavirus DNA sequence DA(C4):DT(G21) DT(C5):DA(G20) DT(C6):DA(G19) DG(C7):DC(G18) DT(C8):DA(G17) DT(C9):DA(G16) DG(C10):DC(G15) DT(C11):DA(G14) DT(C12):DA(G13) DA(C13):DT(G12) DA(C14):DT(G11) DC(C15):DG(G10) DA(C16):DT(G9) DA(C17):DT(G8) DC(C18):DG(G7) DA(C19):DT(G6) DA(C20):DT(G5) DT(C21):DA(G4) chainA ( 26) ASN184 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) LYS186 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) THR187 6 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 30) THR188 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 26) ASN184 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) LYS186 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) THR187 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 30) THR188 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 chainE ( 26) ASN184 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 ( 28) LYS186 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 ( 29) THR187 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 6 ( 30) THR188 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 chainF ( 26) ASN184 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 ( 28) LYS186 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 29) THR187 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 ( 30) THR188 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 prot.sequence atvfklglfkslflcsfhditrlfkNdKTTnqqwvlavfglaevffeasfellkkqcsflqmqkrsheggtcavylicfntaksretvrnlmanmlnvreeclmlqppkirglsaalfwfksslspatlkhgalpewiraqttln/atvfklglfkslflcsfhditrlfkNdKTTnqqwvlavfglaevffeasfellkkqcsflqmqkrsheggtcavylicfntaksretvrnlmanmlnvreeclmlqppkirglsaalfwfksslspatlkhgalpewiraqttln/atvfklglfkslflcsfhditrlfkNdKTTnqqwvlavfglaevffeasfellkkqcsflqmqkrsheggtcavylicfntaksretvrnlmanmlnvreeclmlqppkirglsaalfwfksslspatlkhgalpewiraqttln/atvfklglfkslflcsfhditrlfkNdKTTnqqwvlavfglaevffeasfellkkqcsflqmqkrsheggtcavylicfntaksretvrnlmanmlnvreeclmlqppkirglsaalfwfksslspatlkhgalpewiraqttln >1ksx_I:Origin_of_replication-binding_domain,_RBD-like; title=CRYSTAL STRUCTURES OF TWO INTERMEDIATES IN THE ASSEMBLY OF THE PAPILLOMAVIRUS REPLICATION INITIATION COMPLEX organism=Bovine papillomavirus DNA sequence DA(K4):DT(O21) DT(K5):DA(O20) DT(K6):DA(O19) DG(K7):DC(O18) DT(K8):DA(O17) DT(K9):DA(O16) DG(K10):DC(O15) DT(K11):DA(O14) DT(K12):DA(O13) DA(K13):DT(O12) DA(K14):DT(O11) DC(K15):DG(O10) DA(K16):DT(O9) DA(K17):DT(O8) DC(K18):DG(O7) DA(K19):DT(O6) DA(K20):DT(O5) DT(K21):DA(O4) chainI ( 26) ASN184 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) LYS186 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) THR187 6 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 30) THR188 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence atvfklglfkslflcsfhditrlfkNdKTTnqqwvlavfglaevffeasfellkkqcsflqmqkrsheggtcavylicfntaksretvrnlmanmlnvreeclmlqppkirglsaalfwfksslspatlkhgalpewiraqttln >1ksx_IM: title=CRYSTAL STRUCTURES OF TWO INTERMEDIATES IN THE ASSEMBLY OF THE PAPILLOMAVIRUS REPLICATION INITIATION COMPLEX organism=Bovine papillomavirus DNA sequence DA(O4):DT(K21) DT(O5):DA(K20) DT(O6):DA(K19) DG(O7):DC(K18) DT(O8):DA(K17) DT(O9):DA(K16) DG(O10):DC(K15) DT(O11):DA(K14) DT(O12):DA(K13) DA(O13):DT(K12) DA(O14):DT(K11) DC(O15):DG(K10) DA(O16):DT(K9) DA(O17):DT(K8) DC(O18):DG(K7) DA(O19):DT(K6) DA(O20):DT(K5) DT(O21):DA(K4) chainI ( 26) ASN184 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 ( 28) LYS186 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 ( 29) THR187 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 6 ( 30) THR188 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 chainM ( 26) ASN184 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) LYS186 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) THR187 6 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 30) THR188 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence atvfklglfkslflcsfhditrlfkNdKTTnqqwvlavfglaevffeasfellkkqcsflqmqkrsheggtcavylicfntaksretvrnlmanmlnvreeclmlqppkirglsaalfwfksslspatlkhgalpewiraqttln/atvfklglfkslflcsfhditrlfkNdKTTnqqwvlavfglaevffeasfellkkqcsflqmqkrsheggtcavylicfntaksretvrnlmanmlnvreeclmlqppkirglsaalfwfksslspatlkhgalpewiraqttln >1ksx_JN: title=CRYSTAL STRUCTURES OF TWO INTERMEDIATES IN THE ASSEMBLY OF THE PAPILLOMAVIRUS REPLICATION INITIATION COMPLEX organism=Bovine papillomavirus DNA sequence DA(O4):DT(K21) DT(O5):DA(K20) DT(O6):DA(K19) DG(O7):DC(K18) DT(O8):DA(K17) DT(O9):DA(K16) DG(O10):DC(K15) DT(O11):DA(K14) DT(O12):DA(K13) DA(O13):DT(K12) DA(O14):DT(K11) DC(O15):DG(K10) DA(O16):DT(K9) DA(O17):DT(K8) DC(O18):DG(K7) DA(O19):DT(K6) DA(O20):DT(K5) DT(O21):DA(K4) chainJ ( 26) ASN184 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 ( 28) LYS186 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 29) THR187 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 ( 30) THR188 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 chainN ( 26) ASN184 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) LYS186 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) THR187 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 30) THR188 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 prot.sequence atvfklglfkslflcsfhditrlfkNdKTTnqqwvlavfglaevffeasfellkkqcsflqmqkrsheggtcavylicfntaksretvrnlmanmlnvreeclmlqppkirglsaalfwfksslspatlkhgalpewiraqttln/atvfklglfkslflcsfhditrlfkNdKTTnqqwvlavfglaevffeasfellkkqcsflqmqkrsheggtcavylicfntaksretvrnlmanmlnvreeclmlqppkirglsaalfwfksslspatlkhgalpewiraqttln >1ksy_AC: title=CRYSTAL STRUCTURES OF TWO INTERMEDIATES IN THE ASSEMBLY OF THE PAPILLOMAVIRUS REPLICATION INITIATION COMPLEX organism=Bovine papillomavirus DNA sequence DA(F1):DT(D21) DT(F2):DA(D20) DA(F3):DT(D19) DA(F4):DT(D18) DT(F5):DA(D17) DT(F6):DA(D16) DG(F7):DC(D15) DT(F8):DA(D14) DT(F9):DA(D13) DG(F10):DC(D12) DA(F11):DT(D11) DC(F12):DG(D10) DA(F13):DT(D9) DA(F14):DT(D8) DC(F15):DG(D7) DA(F16):DT(D6) DA(F17):DT(D5) DT(F18):DA(D4) DT(F19):DA(D3) DA(F20):DT(D2) DT(F21):DA(D1) chainA ( 26) ASN184 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) LYS186 0 0 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) THR187 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 30) THR188 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainC ( 26) ASN184 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 ( 28) LYS186 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 0 ( 29) THR187 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 ( 30) THR188 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 prot.sequence atvfklglfkslflcsfhditrlfkNdKTTnqqwvlavfglaevffeasfellkkqcsflqmqkrsheggtcavylicfntaksretvrnlmanmlnvreeclmlqppkirglsaalfwfksslspatlkhgalpewiraqttln/atvfklglfkslflcsfhditrlfkNdKTTnqqwvlavfglaevffeasfellkkqcsflqmqkrsheggtcavylicfntaksretvrnlmanmlnvreeclmlqppkirglsaalfwfksslspatlkhgalpewiraqttln >1ku7_A:Sigma3_and_sigma4_domains_of_RNA_polymerase_sigma_factors; title=CRYSTAL STRUCTURE OF THERMUS AQUATICS RNA POLYMERASE SIGMAA SUBUNIT REGION 4 BOUND TO-35 ELEMENT DNA organism=Thermus aquaticus DNA sequence DC(B2):DG(C23) DT(B3):DA(C22) DT(B4):DA(C21) DG(B5):DC(C20) DA(B6):DT(C19) DC(B7):DG(C18) DA(B8):DT(C17) DA(B9):DT(C16) DA(B10):DT(C15) DG(B11):DC(C14) chainA ( 33) LEU398 0 0 0 0 0 1 0 0 0 0 ( 43) THR408 0 3 3 0 0 0 0 0 0 0 ( 44) ARG409 0 0 0 0 6 16 9 0 0 0 ( 45) GLU410 0 3 9 11 3 0 0 0 0 0 ( 46) ARG411 7 3 0 0 0 0 0 0 0 0 ( 48) ARG413 0 0 0 4 4 0 0 0 0 0 ( 49) GLN414 6 9 0 0 0 0 0 0 0 0 prot.sequence seelekalsklsereamvlkmrkglidgrehtLeevgayfgvTRERiRQienkalrklkyhesrtrklrdfle >1kx3_ABCDEFGH:Histone-fold;lambda_repressor-like_DNA-binding_domains;p53-like_transcription_factors;Nucleic_acid-binding_proteins;P-loop_containing_nucleoside_triphosphate_hydrolases; title=X-RAY STRUCTURE OF THE NUCLEOSOME CORE PARTICLE, NCP146, AT 2.0 A RESOLUTION organism=XENOPUS LAEVIS DNA sequence DA(J-73):DT(I73) DT(J-72):DA(I72) DC(J-71):DG(I71) DA(J-70):DT(I70) DA(J-69):DT(I69) DT(J-68):DA(I68) DA(J-67):DT(I67) DT(J-66):DA(I66) DC(J-65):DG(I65) DC(J-64):DG(I64) DA(J-63):DT(I63) DC(J-62):DG(I62) DC(J-61):DG(I61) DT(J-60):DA(I60) DG(J-59):DC(I59) DC(J-58):DG(I58) DA(J-57):DT(I57) DG(J-56):DC(I56) DA(J-55):DT(I55) DT(J-54):DA(I54) DT(J-53):DA(I53) DC(J-52):DG(I52) DT(J-51):DA(I51) DA(J-50):DT(I50) DC(J-49):DG(I49) DC(J-48):DG(I48) DA(J-47):DT(I47) DA(J-46):DT(I46) DA(J-45):DT(I45) DA(J-44):DT(I44) DG(J-43):DC(I43) DT(J-42):DA(I42) DG(J-41):DC(I41) DT(J-40):DA(I40) DA(J-39):DT(I39) DT(J-38):DA(I38) DT(J-37):DA(I37) DT(J-36):DA(I36) DG(J-35):DC(I35) DG(J-34):DC(I34) DA(J-33):DT(I33) DA(J-32):DT(I32) DA(J-31):DT(I31) DC(J-30):DG(I30) DT(J-29):DA(I29) DG(J-28):DC(I28) DC(J-27):DG(I27) DT(J-26):DA(I26) DC(J-25):DG(I25) DC(J-24):DG(I24) DA(J-23):DT(I23) DT(J-22):DA(I22) DC(J-21):DG(I21) DA(J-20):DT(I20) DA(J-19):DT(I19) DA(J-18):DT(I18) DA(J-17):DT(I17) DG(J-16):DC(I16) DG(J-15):DC(I15) DC(J-14):DG(I14) DA(J-13):DT(I13) DT(J-12):DA(I12) DG(J-11):DC(I11) DT(J-10):DA(I10) DT(J-9):DA(I9) DC(J-8):DG(I8) DA(J-7):DT(I7) DG(J-6):DC(I6) DC(J-5):DG(I5) DT(J-4):DA(I4) DG(J-3):DC(I3) DA(J-2):DT(I2) DA(J-1):DT(I1) DT(J0):DA(I0) DT(J1):DA(I-1) DC(J2):DG(I-2) DA(J3):DT(I-3) DG(J4):DC(I-4) DC(J5):DG(I-5) DT(J6):DA(I-6) DG(J7):DC(I-7) DA(J8):DT(I-8) DA(J9):DT(I-9) DC(J10):DG(I-10) DA(J11):DT(I-11) DT(J12):DA(I-12) DG(J13):DC(I-13) DC(J14):DG(I-14) DC(J15):DG(I-15) DT(J16):DA(I-16) DT(J17):DA(I-17) DT(J18):DA(I-18) DT(J19):DA(I-19) DG(J20):DC(I-20) DA(J21):DT(I-21) DT(J22):DA(I-22) DG(J23):DC(I-23) DG(J24):DC(I-24) DA(J25):DT(I-25) DG(J26):DC(I-26) DC(J27):DG(I-27) DA(J28):DT(I-28) DG(J29):DC(I-29) DT(J30):DA(I-30) DT(J31):DA(I-31) DT(J32):DA(I-32) DC(J33):DG(I-33) DC(J34):DG(I-34) DA(J35):DT(I-35) DA(J36):DT(I-36) DA(J37):DT(I-37) DT(J38):DA(I-38) DA(J39):DT(I-39) DC(J40):DG(I-40) DA(J41):DT(I-41) DC(J42):DG(I-42) DT(J43):DA(I-43) DT(J44):DA(I-44) DT(J45):DA(I-45) DT(J46):DA(I-46) DG(J47):DC(I-47) DG(J48):DC(I-48) DT(J49):DA(I-49) DA(J50):DT(I-50) DG(J51):DC(I-51) DA(J52):DT(I-52) DT(J54):DA(I-54) DC(J55):DG(I-55) DT(J56):DA(I-56) DG(J57):DC(I-57) DC(J58):DG(I-58) DA(J59):DT(I-59) DG(J60):DC(I-60) DG(J61):DC(I-61) DT(J62):DA(I-62) DG(J63):DC(I-63) DG(J64):DC(I-64) DA(J65):DT(I-65) DT(J66):DA(I-66) DA(J67):DT(I-67) DT(J68):DA(I-68) DT(J69):DA(I-69) DG(J70):DC(I-70) DA(J71):DT(I-71) DT(J72):DA(I-72) chainA ( 3) ARG40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 4) TYR41 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) LEU65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) ARG83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 1 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 25) ARG45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainC chainD ( 2) ARG30 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainE ( 3) ARG40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) LEU65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) ARG83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainF ( 17) PRO32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 30) ARG45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainG chainH ( 2) ARG30 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence phRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera/vlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/aktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaardnkktRiiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt/tRkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak/phRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera/krhrkvlrdniqgitkPairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/aktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaardnkktRiiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk/tRkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak >1kx3_C:Histone-fold; title=X-RAY STRUCTURE OF THE NUCLEOSOME CORE PARTICLE, NCP146, AT 2.0 A RESOLUTION organism=XENOPUS LAEVIS DNA sequence DA(J-73):DT(I73) DT(J-72):DA(I72) DC(J-71):DG(I71) DA(J-70):DT(I70) DA(J-69):DT(I69) DT(J-68):DA(I68) DA(J-67):DT(I67) DT(J-66):DA(I66) DC(J-65):DG(I65) DC(J-64):DG(I64) DA(J-63):DT(I63) DC(J-62):DG(I62) DC(J-61):DG(I61) DT(J-60):DA(I60) DG(J-59):DC(I59) DC(J-58):DG(I58) DA(J-57):DT(I57) DG(J-56):DC(I56) DA(J-55):DT(I55) DT(J-54):DA(I54) DT(J-53):DA(I53) DC(J-52):DG(I52) DT(J-51):DA(I51) DA(J-50):DT(I50) DC(J-49):DG(I49) DC(J-48):DG(I48) DA(J-47):DT(I47) DA(J-46):DT(I46) DA(J-45):DT(I45) DA(J-44):DT(I44) DG(J-43):DC(I43) DT(J-42):DA(I42) DG(J-41):DC(I41) DT(J-40):DA(I40) DA(J-39):DT(I39) DT(J-38):DA(I38) DT(J-37):DA(I37) DT(J-36):DA(I36) DG(J-35):DC(I35) DG(J-34):DC(I34) DA(J-33):DT(I33) DA(J-32):DT(I32) DA(J-31):DT(I31) DC(J-30):DG(I30) DT(J-29):DA(I29) DG(J-28):DC(I28) DC(J-27):DG(I27) DT(J-26):DA(I26) DC(J-25):DG(I25) DC(J-24):DG(I24) DA(J-23):DT(I23) DT(J-22):DA(I22) DC(J-21):DG(I21) DA(J-20):DT(I20) DA(J-19):DT(I19) DA(J-18):DT(I18) DA(J-17):DT(I17) DG(J-16):DC(I16) DG(J-15):DC(I15) DC(J-14):DG(I14) DA(J-13):DT(I13) DT(J-12):DA(I12) DG(J-11):DC(I11) DT(J-10):DA(I10) DT(J-9):DA(I9) DC(J-8):DG(I8) DA(J-7):DT(I7) DG(J-6):DC(I6) DC(J-5):DG(I5) DT(J-4):DA(I4) DG(J-3):DC(I3) DA(J-2):DT(I2) DA(J-1):DT(I1) DT(J0):DA(I0) DT(J1):DA(I-1) DC(J2):DG(I-2) DA(J3):DT(I-3) DG(J4):DC(I-4) DC(J5):DG(I-5) DT(J6):DA(I-6) DG(J7):DC(I-7) DA(J8):DT(I-8) DA(J9):DT(I-9) DC(J10):DG(I-10) DA(J11):DT(I-11) DT(J12):DA(I-12) DG(J13):DC(I-13) DC(J14):DG(I-14) DC(J15):DG(I-15) DT(J16):DA(I-16) DT(J17):DA(I-17) DT(J18):DA(I-18) DT(J19):DA(I-19) DG(J20):DC(I-20) DA(J21):DT(I-21) DT(J22):DA(I-22) DG(J23):DC(I-23) DG(J24):DC(I-24) DA(J25):DT(I-25) DG(J26):DC(I-26) DC(J27):DG(I-27) DA(J28):DT(I-28) DG(J29):DC(I-29) DT(J30):DA(I-30) DT(J31):DA(I-31) DT(J32):DA(I-32) DC(J33):DG(I-33) DC(J34):DG(I-34) DA(J35):DT(I-35) DA(J36):DT(I-36) DA(J37):DT(I-37) DT(J38):DA(I-38) DA(J39):DT(I-39) DC(J40):DG(I-40) DA(J41):DT(I-41) DC(J42):DG(I-42) DT(J43):DA(I-43) DT(J44):DA(I-44) DT(J45):DA(I-45) DT(J46):DA(I-46) DG(J47):DC(I-47) DG(J48):DC(I-48) DT(J49):DA(I-49) DA(J50):DT(I-50) DG(J51):DC(I-51) DA(J52):DT(I-52) DT(J54):DA(I-54) DC(J55):DG(I-55) DT(J56):DA(I-56) DG(J57):DC(I-57) DC(J58):DG(I-58) DA(J59):DT(I-59) DG(J60):DC(I-60) DG(J61):DC(I-61) DT(J62):DA(I-62) DG(J63):DC(I-63) DG(J64):DC(I-64) DA(J65):DT(I-65) DT(J66):DA(I-66) DA(J67):DT(I-67) DT(J68):DA(I-68) DT(J69):DA(I-69) DG(J70):DC(I-70) DA(J71):DT(I-71) DT(J72):DA(I-72) chainC prot.sequence aktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaardnkktRiiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt >1kx4_ABCDEFGH:Histone-fold;lambda_repressor-like_DNA-binding_domains;p53-like_transcription_factors;Nucleic_acid-binding_proteins;P-loop_containing_nucleoside_triphosphate_hydrolases; title=X-RAY STRUCTURE OF THE NUCLEOSOME CORE PARTICLE, NCP146B, AT 2.6 A RESOLUTION organism=XENOPUS LAEVIS DNA sequence DA(I-72):DT(J72) DT(I-71):DA(J71) DC(I-70):DG(J70) DT(I-69):DA(J69) DC(I-68):DG(J68) DC(I-67):DG(J67) DA(I-66):DT(J66) DA(I-65):DT(J65) DA(I-64):DT(J64) DT(I-63):DA(J63) DA(I-62):DT(J62) DT(I-61):DA(J61) DC(I-60):DG(J60) DC(I-59):DG(J59) DC(I-58):DG(J58) DT(I-57):DA(J57) DT(I-56):DA(J56) DG(I-55):DC(J55) DC(I-54):DG(J54) DG(I-53):DC(J53) DG(I-52):DC(J52) DA(I-51):DT(J51) DT(I-50):DA(J50) DC(I-49):DG(J49) DG(I-48):DC(J48) DT(I-47):DA(J47) DA(I-46):DT(J46) DG(I-45):DC(J45) DA(I-44):DT(J44) DA(I-43):DT(J43) DA(I-42):DT(J42) DA(I-40):DT(J40) DG(I-39):DC(J39) DT(I-38):DA(J38) DG(I-37):DC(J37) DT(I-36):DA(J36) DG(I-35):DC(J35) DT(I-34):DA(J34) DC(I-33):DG(J33) DA(I-32):DT(J32) DA(I-31):DT(J31) DA(I-30):DT(J30) DC(I-29):DG(J29) DT(I-28):DA(J28) DG(I-27):DC(J27) DC(I-26):DG(J26) DG(I-25):DC(J25) DC(I-24):DG(J24) DA(I-22):DT(J22) DT(I-21):DA(J21) DC(I-20):DG(J20) DA(I-19):DT(J19) DA(I-17):DT(J17) DG(I-16):DC(J16) DG(I-15):DC(J15) DG(I-14):DC(J14) DA(I-13):DT(J13) DA(I-12):DT(J12) DA(I-11):DT(J11) DC(I-10):DG(J10) DT(I-9):DA(J9) DT(I-8):DA(J8) DC(I-7):DG(J7) DA(I-6):DT(J6) DA(I-5):DT(J5) DC(I-4):DG(J4) DT(I-3):DA(J3) DG(I-2):DC(J2) DA(I-1):DT(J1) DA(I0):DT(J0) DT(I1):DA(J-1) DT(I2):DA(J-2) DC(I3):DG(J-3) DA(I4):DT(J-4) DG(I5):DC(J-5) DT(I6):DA(J-6) DT(I7):DA(J-7) DG(I8):DC(J-8) DA(I9):DT(J-9) DA(I10):DT(J-10) DG(I11):DC(J-11) DT(I12):DA(J-12) DT(I13):DA(J-13) DT(I14):DA(J-14) DC(I15):DG(J-15) DC(I16):DG(J-16) DC(I17):DG(J-17) DT(I18):DA(J-18) DT(I19):DA(J-19) DT(I20):DA(J-20) DG(I21):DC(J-21) DA(I22):DT(J-22) DT(I23):DA(J-23) DA(I24):DT(J-24) DG(I25):DC(J-25) DC(I26):DG(J-26) DG(I27):DC(J-27) DC(I28):DG(J-28) DA(I29):DT(J-29) DG(I30):DC(J-30) DT(I31):DA(J-31) DT(I32):DA(J-32) DT(I33):DA(J-33) DG(I34):DC(J-34) DA(I35):DT(J-35) DC(I36):DG(J-36) DA(I37):DT(J-37) DC(I38):DG(J-38) DA(I39):DT(J-39) DC(I40):DG(J-40) DT(I41):DA(J-41) DT(I42):DA(J-42) DT(I43):DA(J-43) DT(I44):DA(J-44) DT(I45):DA(J-45) DC(I46):DG(J-46) DT(I47):DA(J-47) DA(I48):DT(J-48) DC(I49):DG(J-49) DG(I50):DC(J-50) DT(I52):DA(J-52) DC(I53):DG(J-53) DC(I54):DG(J-54) DG(I55):DC(J-55) DC(I56):DG(J-56) DA(I57):DT(J-57) DG(I59):DC(J-59) DG(I60):DC(J-60) DG(I61):DC(J-61) DA(I62):DT(J-62) DT(I63):DA(J-63) DA(I64):DT(J-64) DT(I65):DA(J-65) DT(I66):DA(J-66) DT(I67):DA(J-67) DG(I68):DC(J-68) DG(I69):DC(J-69) DA(I70):DT(J-70) DG(I71):DC(J-71) DA(I72):DT(J-72) DT(I73):DA(J-73) chainA ( 3) ARG40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 4) TYR41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 ( 46) ARG83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB chainC ( 20) ARG35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 27) ARG42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainD ( 3) ARG26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 3 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainE ( 2) ARG40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 3) TYR41 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 27) LEU65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 45) ARG83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainF ( 21) ARG45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainG ( 29) ARG42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainH ( 2) ARG30 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence phRYrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera/kvLRdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenVirdavtytehakrktvtamdvvyalkrqgrtlygfgg/trssraglqfpvgrvhrllRkgnyaeRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpk/kkRrktrkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak/hRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera/niqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/aktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktRiiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpk/tRkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak >1kx4_G:Histone-fold; title=X-RAY STRUCTURE OF THE NUCLEOSOME CORE PARTICLE, NCP146B, AT 2.6 A RESOLUTION organism=? DNA sequence DA(I-72):DT(J72) DT(I-71):DA(J71) DC(I-70):DG(J70) DT(I-69):DA(J69) DC(I-68):DG(J68) DC(I-67):DG(J67) DA(I-66):DT(J66) DA(I-65):DT(J65) DA(I-64):DT(J64) DT(I-63):DA(J63) DA(I-62):DT(J62) DT(I-61):DA(J61) DC(I-60):DG(J60) DC(I-59):DG(J59) DC(I-58):DG(J58) DT(I-57):DA(J57) DT(I-56):DA(J56) DG(I-55):DC(J55) DC(I-54):DG(J54) DG(I-53):DC(J53) DG(I-52):DC(J52) DA(I-51):DT(J51) DT(I-50):DA(J50) DC(I-49):DG(J49) DG(I-48):DC(J48) DT(I-47):DA(J47) DA(I-46):DT(J46) DG(I-45):DC(J45) DA(I-44):DT(J44) DA(I-43):DT(J43) DA(I-42):DT(J42) DA(I-40):DT(J40) DG(I-39):DC(J39) DT(I-38):DA(J38) DG(I-37):DC(J37) DT(I-36):DA(J36) DG(I-35):DC(J35) DT(I-34):DA(J34) DC(I-33):DG(J33) DA(I-32):DT(J32) DA(I-31):DT(J31) DA(I-30):DT(J30) DC(I-29):DG(J29) DT(I-28):DA(J28) DG(I-27):DC(J27) DC(I-26):DG(J26) DG(I-25):DC(J25) DC(I-24):DG(J24) DA(I-22):DT(J22) DT(I-21):DA(J21) DC(I-20):DG(J20) DA(I-19):DT(J19) DA(I-17):DT(J17) DG(I-16):DC(J16) DG(I-15):DC(J15) DG(I-14):DC(J14) DA(I-13):DT(J13) DA(I-12):DT(J12) DA(I-11):DT(J11) DC(I-10):DG(J10) DT(I-9):DA(J9) DT(I-8):DA(J8) DC(I-7):DG(J7) DA(I-6):DT(J6) DA(I-5):DT(J5) DC(I-4):DG(J4) DT(I-3):DA(J3) DG(I-2):DC(J2) DA(I-1):DT(J1) DA(I0):DT(J0) DT(I1):DA(J-1) DT(I2):DA(J-2) DC(I3):DG(J-3) DA(I4):DT(J-4) DG(I5):DC(J-5) DT(I6):DA(J-6) DT(I7):DA(J-7) DG(I8):DC(J-8) DA(I9):DT(J-9) DA(I10):DT(J-10) DG(I11):DC(J-11) DT(I12):DA(J-12) DT(I13):DA(J-13) DT(I14):DA(J-14) DC(I15):DG(J-15) DC(I16):DG(J-16) DC(I17):DG(J-17) DT(I18):DA(J-18) DT(I19):DA(J-19) DT(I20):DA(J-20) DG(I21):DC(J-21) DA(I22):DT(J-22) DT(I23):DA(J-23) DA(I24):DT(J-24) DG(I25):DC(J-25) DC(I26):DG(J-26) DG(I27):DC(J-27) DC(I28):DG(J-28) DA(I29):DT(J-29) DG(I30):DC(J-30) DT(I31):DA(J-31) DT(I32):DA(J-32) DT(I33):DA(J-33) DG(I34):DC(J-34) DA(I35):DT(J-35) DC(I36):DG(J-36) DA(I37):DT(J-37) DC(I38):DG(J-38) DA(I39):DT(J-39) DC(I40):DG(J-40) DT(I41):DA(J-41) DT(I42):DA(J-42) DT(I43):DA(J-43) DT(I44):DA(J-44) DT(I45):DA(J-45) DC(I46):DG(J-46) DT(I47):DA(J-47) DA(I48):DT(J-48) DC(I49):DG(J-49) DG(I50):DC(J-50) DT(I52):DA(J-52) DC(I53):DG(J-53) DC(I54):DG(J-54) DG(I55):DC(J-55) DC(I56):DG(J-56) DA(I57):DT(J-57) DG(I59):DC(J-59) DG(I60):DC(J-60) DG(I61):DC(J-61) DA(I62):DT(J-62) DT(I63):DA(J-63) DA(I64):DT(J-64) DT(I65):DA(J-65) DT(I66):DA(J-66) DT(I67):DA(J-67) DG(I68):DC(J-68) DG(I69):DC(J-69) DA(I70):DT(J-70) DG(I71):DC(J-71) DA(I72):DT(J-72) DT(I73):DA(J-73) chainG ( 29) ARG42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence aktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktRiiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpk >1kx5_ABCDEFGH:Histone-fold;lambda_repressor-like_DNA-binding_domains;p53-like_transcription_factors;Nucleic_acid-binding_proteins;P-loop_containing_nucleoside_triphosphate_hydrolases; title=X-RAY STRUCTURE OF THE NUCLEOSOME CORE PARTICLE, NCP147, AT 1.9 A RESOLUTION organism=XENOPUS LAEVIS DNA sequence DA(J-73):DT(I73) DT(J-72):DA(I72) DC(J-71):DG(I71) DA(J-70):DT(I70) DA(J-69):DT(I69) DT(J-68):DA(I68) DA(J-67):DT(I67) DT(J-66):DA(I66) DC(J-65):DG(I65) DC(J-64):DG(I64) DA(J-63):DT(I63) DC(J-62):DG(I62) DC(J-61):DG(I61) DT(J-60):DA(I60) DG(J-59):DC(I59) DC(J-58):DG(I58) DA(J-57):DT(I57) DG(J-56):DC(I56) DA(J-55):DT(I55) DT(J-54):DA(I54) DC(J-52):DG(I52) DT(J-51):DA(I51) DA(J-50):DT(I50) DC(J-49):DG(I49) DC(J-48):DG(I48) DA(J-47):DT(I47) DA(J-46):DT(I46) DA(J-45):DT(I45) DA(J-44):DT(I44) DG(J-43):DC(I43) DT(J-42):DA(I42) DG(J-41):DC(I41) DT(J-40):DA(I40) DA(J-39):DT(I39) DT(J-38):DA(I38) DT(J-37):DA(I37) DT(J-36):DA(I36) DG(J-35):DC(I35) DG(J-34):DC(I34) DA(J-33):DT(I33) DA(J-32):DT(I32) DA(J-31):DT(I31) DC(J-30):DG(I30) DT(J-29):DA(I29) DG(J-28):DC(I28) DC(J-27):DG(I27) DT(J-26):DA(I26) DC(J-25):DG(I25) DC(J-24):DG(I24) DA(J-23):DT(I23) DT(J-22):DA(I22) DC(J-21):DG(I21) DA(J-20):DT(I20) DA(J-19):DT(I19) DA(J-18):DT(I18) DA(J-17):DT(I17) DG(J-16):DC(I16) DG(J-15):DC(I15) DC(J-14):DG(I14) DA(J-13):DT(I13) DT(J-12):DA(I12) DG(J-11):DC(I11) DT(J-10):DA(I10) DT(J-9):DA(I9) DC(J-8):DG(I8) DA(J-7):DT(I7) DG(J-6):DC(I6) DC(J-5):DG(I5) DT(J-4):DA(I4) DG(J-3):DC(I3) DG(J-2):DC(I2) DA(J-1):DT(I1) DT(J0):DA(I0) DT(J1):DA(I-1) DC(J2):DG(I-2) DC(J3):DG(I-3) DA(J4):DT(I-4) DG(J5):DC(I-5) DC(J6):DG(I-6) DT(J7):DA(I-7) DG(J8):DC(I-8) DA(J9):DT(I-9) DA(J10):DT(I-10) DC(J11):DG(I-11) DA(J12):DT(I-12) DT(J13):DA(I-13) DG(J14):DC(I-14) DC(J15):DG(I-15) DC(J16):DG(I-16) DT(J17):DA(I-17) DT(J18):DA(I-18) DT(J19):DA(I-19) DT(J20):DA(I-20) DG(J21):DC(I-21) DA(J22):DT(I-22) DT(J23):DA(I-23) DG(J24):DC(I-24) DG(J25):DC(I-25) DA(J26):DT(I-26) DG(J27):DC(I-27) DC(J28):DG(I-28) DA(J29):DT(I-29) DG(J30):DC(I-30) DT(J31):DA(I-31) DT(J32):DA(I-32) DT(J33):DA(I-33) DC(J34):DG(I-34) DC(J35):DG(I-35) DA(J36):DT(I-36) DA(J37):DT(I-37) DA(J38):DT(I-38) DT(J39):DA(I-39) DA(J40):DT(I-40) DC(J41):DG(I-41) DA(J42):DT(I-42) DC(J43):DG(I-43) DT(J44):DA(I-44) DT(J45):DA(I-45) DT(J46):DA(I-46) DT(J47):DA(I-47) DG(J48):DC(I-48) DG(J49):DC(I-49) DT(J50):DA(I-50) DA(J51):DT(I-51) DG(J52):DC(I-52) DT(J53):DA(I-53) DA(J54):DT(I-54) DT(J55):DA(I-55) DC(J56):DG(I-56) DT(J57):DA(I-57) DG(J58):DC(I-58) DC(J59):DG(I-59) DA(J60):DT(I-60) DG(J61):DC(I-61) DG(J62):DC(I-62) DT(J63):DA(I-63) DG(J64):DC(I-64) DG(J65):DC(I-65) DA(J66):DT(I-66) DT(J67):DA(I-67) DA(J68):DT(I-68) DT(J69):DA(I-69) DT(J70):DA(I-70) DG(J71):DC(I-71) DA(J72):DT(I-72) DT(J73):DA(I-73) chainA ( 40) ARG40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 41) TYR41 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 65) LEU65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 83) ARG83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 17) ARG17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 45) ARG45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainC ( 42) ARG42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (128) LYS128 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 6 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainD ( 9) LYS9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 24) LYS24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 26) ARG26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 4 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 27) ARG27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 30) ARG30 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainE ( 39) HIS39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 ( 40) ARG40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 41) TYR41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 65) LEU65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 83) ARG83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainF ( 1) SER1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 32) PRO32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 45) ARG45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainG ( 5) LYS5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 13) LYS13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 11 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 42) ARG42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainH ( 27) ARG27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 30) ARG30 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence artkqtarkstggkaprkqlatkaarksapatggvkkpHRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera/sgrgkggkglgkggakRhrkvlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/sgrgkqggktrakaktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktRiiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkktessksksK/aksapapkKgskkavtktqkkdgKkRRktRkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak/artkqtarkstggkaprkqlatkaarksapatggvkkpHRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera/SgrgkggkglgkggakrhrkvlrdniqgitkPairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/sgrgKqggktraKaktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktRiiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkktessksksk/aksapapkkgskkavtktqkkdgkkrRktRkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak >1l1m_AB: title=SOLUTION STRUCTURE OF A DIMER OF LAC REPRESSOR DNA-BINDING DOMAIN COMPLEXED TO ITS NATURAL OPERATOR O1 organism=ESCHERICHIA COLI DNA sequence DG(C1):DC(D23) DA(C2):DT(D22) DA(C3):DT(D21) DT(C4):DA(D20) DT(C5):DA(D19) DG(C6):DC(D18) DT(C7):DA(D17) DG(C8):DC(D16) DA(C9):DT(D15) DG(C10):DC(D14) DC(C11):DG(D13) DG(C12):DC(D12) DG(C13):DC(D11) DA(C14):DT(D10) DT(C15):DA(D9) DA(C16):DT(D8) DA(C17):DT(D7) DC(C18):DG(D6) DA(C19):DT(D5) DA(C20):DT(D4) DT(C21):DA(D3) DT(C22):DA(D2) DT(C23):DA(D1) chainA ( 6) LEU6 0 0 0 0 0 0 0 0 1 4 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 7) TYR7 0 0 0 0 0 0 0 0 0 6 4 0 0 0 0 0 0 0 0 0 0 0 0 ( 16) SER16 0 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 17) TYR17 0 0 0 0 0 0 5 12 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 18) GLN18 0 0 0 0 0 3 11 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 21) SER21 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 22) ARG22 0 0 0 0 4 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) HIS29 0 0 0 10 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 53) ALA53 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 ( 56) LEU56 0 0 0 0 0 0 0 0 0 0 7 8 0 0 0 0 0 0 0 0 0 0 0 ( 57) ALA57 0 0 0 0 0 0 0 0 1 4 2 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 7) TYR7 0 0 0 0 0 0 0 0 0 0 0 0 5 2 0 0 0 0 0 0 0 0 0 ( 16) SER16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 ( 17) TYR17 0 0 0 0 0 0 0 0 0 0 0 0 0 14 14 0 0 0 0 0 0 0 0 ( 18) GLN18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 20 31 0 0 0 0 0 0 ( 21) SER21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 ( 22) ARG22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 5 3 0 0 0 0 ( 29) HIS29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 12 0 0 0 ( 53) ALA53 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 ( 56) LEU56 0 0 0 0 0 0 0 0 0 0 22 8 0 0 0 0 0 0 0 0 0 0 0 ( 57) ALA57 0 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 0 0 0 0 0 0 0 prot.sequence mkpvtLYdvaeyagvSYQtvSRvvnqasHvsaktrekveaamaelnyipnrcAqqLAgkqsl/mkpvtlYdvaeyagvSYQtvSRvvnqasHvsaktrekveaamaelnyipnrcAqqLAgkqsl >1l1t_A:N-terminal_domain_of_MutM-like_DNA_repair_proteins;S13-like_H2TH_domain;Glucocorticoid_receptor-like_DNA-binding_domain; title=MUTM (FPG) BOUND TO ABASIC-SITE CONTAINING DNA organism=GEOBACILLUS STEAROTHERMOPHILUS DNA sequence DG(C13):DC(B12) DT(C14):DA(B11) DC(C15):DG(B10) DC(C16):DG(B9) DA(C17):DT(B8) HPD(C18):DC(B7) DG(C19):DC(B6) DT(C20):DA(B5) DC(C21):DG(B4) DT(C22):DA(B3) DA(C23):DT(B2) DC(C24):DG(B1) chainA ( 75) ARG76 0 0 0 0 0 0 7 3 0 0 0 0 ( 76) MET77 0 0 0 0 0 0 10 0 0 0 0 0 (111) ARG112 0 0 0 0 64 14 0 0 0 0 0 0 (113) PHE114 0 0 0 0 0 10 37 0 0 0 0 0 (249) ARG264 0 0 0 0 0 0 3 2 0 0 0 0 prot.sequence pelpevetirrtllplivgktiedvrifwpniirhprdseafaarmigqtvrglerrgkflkflldrdalishlRMEgryavasaleplephthvvfcftdgselryrdvRkFgtmhvyakeeadrrpplaelgpeplspafspavlaeravktkrsvkallldqtvvagfgniyvdeslfragilpgrpaaslsskeierlheemvatigeavmkggsfqhhlyvygrqgnpckrcgtpiektvvagRgthycprcqr >1l1z_A:N-terminal_domain_of_MutM-like_DNA_repair_proteins;S13-like_H2TH_domain;Glucocorticoid_receptor-like_DNA-binding_domain; title=MUTM (FPG) COVALENT-DNA INTERMEDIATE organism=GEOBACILLUS STEAROTHERMOPHILUS DNA sequence DG(B1):DC(C24) DT(B2):DA(C23) DA(B3):DT(C22) DG(B4):DC(C21) DA(B5):DT(C20) DC(B6):DG(C19) DC(B7):PED(C18) DT(B8):DA(C17) DG(B9):DC(C16) DG(B10):DC(C15) DA(B11):DT(C14) DC(B12):DG(C13) chainA ( 75) ARG76 0 0 0 0 1 8 0 0 0 0 0 0 ( 76) MET77 0 0 0 0 0 18 0 0 0 0 0 0 (111) ARG112 0 0 0 0 0 0 15 31 0 0 0 0 (113) PHE114 0 0 0 0 0 72 9 0 0 0 0 0 (253) ARG264 0 0 0 0 2 6 0 0 0 0 0 0 prot.sequence pelpevetirrtllplivgktiedvrifwpniirhprdseafaarmigqtvrglerrgkflkflldrdalishlRMEgryavasaleplephthvvfcftdgselryrdvRkFgtmhvyakeeadrrpplaelgpeplspafspavlaeravktkrsvkallldqtvvagfgniyvdeslfragilpgrpaaslsskeierlheemvatigeavmkggstvgtfqhhlyvygrqgnpckrcgtpiektvvagRgthycprcqr >1l2c_A:N-terminal_domain_of_MutM-like_DNA_repair_proteins;S13-like_H2TH_domain;Glucocorticoid_receptor-like_DNA-binding_domain; title=MUTM (FPG)-DNA ESTRANGED THYMINE MISMATCH RECOGNITION COMPLEX organism=GEOBACILLUS STEAROTHERMOPHILUS DNA sequence DG(B1):DC(C24) DT(B2):DA(C23) DA(B3):DT(C22) DG(B4):DC(C21) DA(B5):DT(C20) DC(B6):DG(C19) DT(B7):HPD(C18) DT(B8):DA(C17) DG(B9):DC(C16) DG(B10):DC(C15) DA(B11):DT(C14) DC(B12):DG(C13) chainA ( 75) ARG76 0 0 0 0 1 12 0 0 0 0 0 0 ( 76) MET77 0 0 0 0 0 22 0 0 0 0 0 0 ( 77) GLU78 0 0 0 0 0 0 0 1 0 0 0 0 (110) VAL111 0 0 0 0 0 0 0 1 0 0 0 0 (111) ARG112 0 0 0 0 0 0 9 38 0 0 0 0 (113) PHE114 0 0 0 0 0 68 8 0 0 0 0 0 (249) ARG264 0 0 0 0 0 6 0 0 0 0 0 0 prot.sequence pelpevetirrtllplivgktiedvrifwpniirhprdseafaarmigqtvrglerrgkflkflldrdalishlRMEgryavasaleplephthvvfcftdgselryrdVRkFgtmhvyakeeadrrpplaelgpeplspafspavlaeravktkrsvkallldqtvvagfgniyvdeslfragilpgrpaaslsskeierlheemvatigeavmkggsfqhhlyvygrqgnpckrcgtpiektvvagRgthycprcqr >1l2d_A:N-terminal_domain_of_MutM-like_DNA_repair_proteins;S13-like_H2TH_domain;Glucocorticoid_receptor-like_DNA-binding_domain; title=MUTM (FPG)-DNA ESTRANGED GUANINE MISMATCH RECOGNITION COMPLEX organism=GEOBACILLUS STEAROTHERMOPHILUS DNA sequence DG(C13):DC(B12) DT(C14):DA(B11) DC(C15):DG(B10) DC(C16):DG(B9) DA(C17):DT(B8) HPD(C18):DG(B7) DG(C19):DC(B6) DT(C20):DA(B5) DC(C21):DG(B4) DT(C22):DA(B3) DC(C24):DG(B1) chainA ( 75) ARG76 0 0 0 0 0 0 7 1 0 0 0 ( 76) MET77 0 0 0 0 0 0 11 0 0 0 0 (111) ARG112 0 0 0 0 72 16 0 0 0 0 0 (113) PHE114 0 0 0 0 0 15 32 0 0 0 0 (249) ARG264 0 0 0 0 0 0 4 1 0 0 0 prot.sequence pelpevetirrtllplivgktiedvrifwpniirhprdseafaarmigqtvrglerrgkflkflldrdalishlRMegryavasaleplephthvvfcftdgselryrdvRkFgtmhvyakeeadrrpplaelgpeplspafspavlaeravktkrsvkallldqtvvagfgniyvdeslfragilpgrpaaslsskeierlheemvatigeavmkggsfqhhlyvygrqgnpckrcgtpiektvvagRgthycprcqr >1l3l_AC: title=CRYSTAL STRUCTURE OF A BACTERIAL QUORUM-SENSING TRANSCRIPTION FACTOR COMPLEXED WITH PHEROMONE AND DNA organism=Agrobacterium tumefaciens DNA sequence DG(F101):DC(H120) DA(F102):DT(H119) DT(F103):DA(H118) DG(F104):DC(H117) DT(F105):DA(H116) DG(F106):DC(H115) DC(F107):DG(H114) DA(F108):DT(H113) DG(F109):DC(H112) DA(F110):DT(H111) DT(F111):DA(H110) DC(F112):DG(H109) DT(F113):DA(H108) DG(F114):DC(H107) DC(F115):DG(H106) DA(F116):DT(H105) DC(F117):DG(H104) DA(F118):DT(H103) DT(F119):DA(H102) DC(F120):DG(H101) chainA (190) MET191 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 (201) TYR202 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 (202) ASN203 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 (205) ARG206 0 0 0 0 0 0 0 0 0 0 0 0 1 6 12 9 0 0 0 0 (206) VAL207 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5 3 0 0 (209) ARG210 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 10 5 0 0 0 (210) GLU211 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 chainC (182) MET191 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 (193) TYR202 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 (194) ASN203 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (197) ARG206 0 0 0 0 8 13 7 1 0 0 0 0 0 0 0 0 0 0 0 0 (198) VAL207 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (201) ARG210 0 0 0 4 11 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence qhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqstyfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipiktangfmsmftmasdkpvidldreidavaaaatigqiharisflrttptaedaawldpkeatylrwiavgktMeeiadvegvkYNsvRVklREamkrfdvrskahltalairrkli/mqhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqstyfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipiktangfmsmftmasdkpvidldreidavaaaatigqiharisflawldpkeatylrwiavgktMeeiadvegvkYNsvRVklReamkrfdvrskahltalairrkli >1l3l_BD: title=CRYSTAL STRUCTURE OF A BACTERIAL QUORUM-SENSING TRANSCRIPTION FACTOR COMPLEXED WITH PHEROMONE AND DNA organism=Agrobacterium tumefaciens DNA sequence DG(E1):DC(G20) DA(E2):DT(G19) DT(E3):DA(G18) DG(E4):DC(G17) DT(E5):DA(G16) DG(E6):DC(G15) DC(E7):DG(G14) DA(E8):DT(G13) DG(E9):DC(G12) DA(E10):DT(G11) DT(E11):DA(G10) DC(E12):DG(G9) DT(E13):DA(G8) DG(E14):DC(G7) DC(E15):DG(G6) DA(E16):DT(G5) DC(E17):DG(G4) DA(E18):DT(G3) DT(E19):DA(G2) DC(E20):DG(G1) chainB (190) MET191 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 (201) TYR202 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 (202) ASN203 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 (205) ARG206 0 0 0 0 0 0 0 0 0 0 0 0 1 6 10 10 0 0 0 0 (206) VAL207 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5 3 0 0 (209) ARG210 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 11 5 0 0 0 (210) GLU211 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 chainD (182) MET191 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 (193) TYR202 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 (194) ASN203 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (197) ARG206 0 0 0 0 9 11 6 2 0 0 0 0 0 0 0 0 0 0 0 0 (198) VAL207 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (201) ARG210 0 0 0 4 12 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence qhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqstyfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipiktangfmsmftmasdkpvidldreidavaaaatigqiharisflrttptaedaawldpkeatylrwiavgktMeeiadvegvkYNsvRVklREamkrfdvrskahltalairrkli/mqhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqstyfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipiktangfmsmftmasdkpvidldreidavaaaatigqiharisflawldpkeatylrwiavgktMeeiadvegvkYNsvRVklReamkrfdvrskahltalairrkli >1l3s_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 9 BASE PAIRS OF DUPLEX DNA. organism=Geobacillus stearothermophilus DNA sequence DC(C6):DG(B29) DG(C7):DC(B28) DT(C8):DA(B27) DG(C9):DC(B26) DA(C10):DT(B25) DT(C11):DA(B24) DC(C12):DG(B23) DG(C13):DC(B22) DC(C14):DG(B21) chainA (286) LYS582 0 0 0 5 3 0 0 0 0 (291) TYR587 0 0 1 0 0 0 0 0 0 (319) ARG615 11 3 0 0 0 0 0 0 0 (329) ASN625 0 1 6 2 0 0 0 0 0 (333) ARG629 4 7 0 0 0 0 0 0 0 (418) TYR714 46 0 0 0 0 0 0 0 0 (501) GLN797 4 0 0 0 0 0 0 0 0 (533) HIS829 0 1 0 0 0 0 0 0 0 prot.sequence akmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgKlqsTYiegllkvvrpdtkkvhtifnqaltqtgRlsstepNlqNipiRleegrkirqafvpsesdwlifaadysqiElrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnfgivYgisdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfaermamNtpiQgsaadiikkamidlnarlkeerlqahlllqvHdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak >1l3t_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT PRODUCT COMPLEX WITH 10 BASE PAIRS OF DUPLEX DNA FOLLOWING ADDITION OF A SINGLE DTTP RESIDUE organism=Geobacillus stearothermophilus DNA sequence DA(C4):DT(B29) DC(C5):DG(B28) DG(C6):DC(B27) DT(C7):DA(B26) DG(C8):DC(B25) DA(C9):DT(B24) DT(C10):DA(B23) DC(C11):DG(B22) DG(C12):DC(B21) DC(C13):DG(B20) chainA (286) LYS582 0 0 0 5 3 0 0 0 0 0 (291) TYR587 0 0 1 0 0 0 0 0 0 0 (319) ARG615 7 3 0 0 0 0 0 0 0 0 (326) ASN622 0 0 1 0 0 0 0 0 0 0 (329) ASN625 0 1 7 1 0 0 0 0 0 0 (418) TYR714 46 0 0 0 0 0 0 0 0 0 (501) GLN797 2 0 0 0 0 0 0 0 0 0 (533) HIS829 0 1 0 0 0 0 0 0 0 0 prot.sequence akmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgKlqsTYiegllkvvrpdtkkvhtifnqaltqtgRlsstepNlqNipirleegrkirqafvpsesdwlifaadysqiElrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnfgivYgisdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfaermamNtpiQgsaadiikkamidlnarlkeerlqahlllqvHdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak >1l3u_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT PRODUCT COMPLEX WITH 11 BASE PAIRS OF DUPLEX DNA FOLLOWING ADDITION OF A DTTP AND A DATP RESIDUE. organism=Geobacillus stearothermophilus DNA sequence DT(C4):DA(B29) DA(C5):DT(B28) DC(C6):DG(B27) DG(C7):DC(B26) DT(C8):DA(B25) DG(C9):DC(B24) DA(C10):DT(B23) DT(C11):DA(B22) DC(C12):DG(B21) DG(C13):DC(B20) DC(C14):DG(B19) chainA (286) LYS582 0 0 0 5 3 0 0 0 0 0 0 (291) TYR587 0 0 1 0 0 0 0 0 0 0 0 (319) ARG615 8 2 0 0 0 0 0 0 0 0 0 (326) ASN622 0 0 1 0 0 0 0 0 0 0 0 (329) ASN625 0 1 11 2 0 0 0 0 0 0 0 (333) ARG629 4 9 0 0 0 0 0 0 0 0 0 (418) TYR714 49 0 0 0 0 0 0 0 0 0 0 (501) GLN797 3 0 0 0 0 0 0 0 0 0 0 prot.sequence akmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgKlqsTYiegllkvvrpdtkkvhtifnqaltqtgRlsstepNlqNipiRleegrkirqafvpsesdwlifaadysqiElrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnfgivYgisdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfaermamNtpiQgsaadiikkamidlnarlkeerlqahlllqvHdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak >1l3v_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT PRODUCT COMPLEX WITH 15 BASE PAIRS OF DUPLEX DNA FOLLOWING ADDITION OF DTTP, DATP, DCTP, AND DGTP RESIDUES. organism=Geobacillus stearothermophilus DNA sequence DG(B20):DC(C18) DC(B21):DG(C17) DG(B22):DC(C16) DA(B23):DT(C15) DT(B24):DA(C14) DC(B25):DG(C13) DA(B26):DT(C12) DC(B27):DG(C11) DG(B28):DC(C10) DT(B29):DA(C9) DA(B30):DT(C8) DC(B31):DG(C7) DG(B32):DC(C6) DT(B33):DA(C5) DC(B34):DG(C4) chainA (286) LYS582 0 0 0 0 0 0 0 0 0 0 3 5 0 0 0 (291) TYR587 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 (319) ARG615 0 0 0 0 0 0 0 0 0 0 0 0 0 3 8 (326) ASN622 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 (329) ASN625 0 0 0 0 0 0 0 0 0 0 0 1 9 1 0 (418) TYR714 0 0 0 0 0 0 0 0 0 0 0 0 0 0 45 (501) GLN797 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 prot.sequence akmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgKlqsTYiegllkvvrpdtkkvhtifnqaltqtgRlsstepNlqNipirleegrkirqafvpsesdwlifaadysqiElrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnfgivYgisdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfaermamNtpiQgsaadiikkamidlnarlkeerlqahlllqvHdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak >1l5u_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT PRODUCT COMPLEX WITH 12 BASE PAIRS OF DUPLEX DNA FOLLOWING ADDITION OF A DTTP, A DATP, AND A DCTP RESIDUE. organism=Geobacillus stearothermophilus DNA sequence DG(C4):DC(B29) DT(C5):DA(B28) DA(C6):DT(B27) DC(C7):DG(B26) DG(C8):DC(B25) DT(C9):DA(B24) DG(C10):DC(B23) DA(C11):DT(B22) DT(C12):DA(B21) DC(C13):DG(B20) DG(C14):DC(B19) DC(C15):DG(B18) chainA (286) LYS582 0 0 0 6 3 0 0 0 0 0 0 0 (291) TYR587 0 0 1 0 0 0 0 0 0 0 0 0 (319) ARG615 9 2 0 0 0 0 0 0 0 0 0 0 (329) ASN625 0 1 4 2 0 0 0 0 0 0 0 0 (418) TYR714 54 0 0 0 0 0 0 0 0 0 0 0 (501) GLN797 4 0 0 0 0 0 0 0 0 0 0 0 (533) HIS829 1 0 0 0 0 0 0 0 0 0 0 0 prot.sequence akmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgKlqsTYiegllkvvrpdtkkvhtifnqaltqtgRlsstepNlqNipirleegrkirqafvpsesdwlifaadysqielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnfgivYgisdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfaermamntpiQgsaadiikkamidlnarlkeerlqahlllqvHdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak >1lat_AB: title=GLUCOCORTICOID RECEPTOR MUTANT/DNA COMPLEX organism=Rattus norvegicus DNA sequence DT(D2):DA(C19) DC(D3):DG(C18) DC(D4):DG(C17) DA(D5):DT(C16) DG(D6):DC(C15) DA(D7):DT(C14) DA(D8):DT(C13) DC(D9):DG(C12) DA(D10):DT(C11) DT(D11):DA(C10) DG(D12):DC(C9) DT(D13):DA(C8) DT(D14):DA(C7) DC(D15):DG(C6) DT(D16):DA(C5) DG(D17):DC(C4) DG(D18):DC(C3) DA(D19):DT(C2) chainA ( 21) GLU458 0 0 0 0 0 0 0 0 0 0 0 3 5 0 0 0 0 0 ( 24) LYS461 0 0 0 0 0 0 0 0 0 0 0 0 1 9 6 0 0 0 ( 25) ALA462 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 ( 29) ARG466 0 0 0 0 0 0 0 0 0 22 13 0 0 0 0 0 0 0 chainB ( 22) GLU458 0 0 0 0 0 6 1 0 0 0 0 0 0 0 0 0 0 0 ( 25) LYS461 0 0 0 5 9 1 0 0 0 0 0 0 0 0 0 0 0 0 ( 26) ALA462 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 ( 30) ARG466 0 0 0 0 0 0 0 11 18 0 0 0 0 0 0 0 0 0 ( 74) ARG510 0 1 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence rpclvcsdeasgchygvltcEgcKAffkRavegqhnylckyegkciidkirrkncpacryrkclqagmnle/arpclvcsdeasgchygvltcEgcKAffkRavegqhnylckyegkciidkirrkncpacryrkclqagmnleaR >1lb2_ABE: title=STRUCTURE OF THE E. COLI ALPHA C-TERMINAL DOMAIN OF RNA POLYMERASE IN COMPLEX WITH CAP AND DNA organism=ESCHERICHIA COLI DNA sequence DC(K33):DG(J33) DT(K32):DA(J32) DT(K31):DA(J31) DT(K30):DA(J30) DT(K29):DA(J29) DT(K28):DA(J28) DT(K27):DA(J27) DC(K26):DG(J26) DC(K25):DG(J25) DT(K24):DA(J24) DA(K23):DT(J23) DA(K22):DT(J22) DA(K21):DT(J21) DA(K20):DT(J20) DT(K19):DA(J19) DG(K18):DC(J18) DT(K17):DA(J17) DG(K16):DC(J16) DA(K15):DT(J15) DT(K14):DA(J14) chainA (162) GLN170 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 (171) SER179 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 (172) ARG180 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 9 2 0 0 0 (173) GLU181 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 8 6 0 (174) THR182 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 (177) ARG185 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 7 10 1 chainB ( 16) ARG265 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainE ( 16) ARG265 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence ptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemilsylnqgdfigelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqmarrlqvtsekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrQeigqivgcSRETvgRilkmledqnlisahgktivvygtr/dpillrpvddleltvRsanclkaeaihyigdlvqrtevellktpnlgkkslteikdvlasrglslgmrlenw/dpillrpvddleltvRsanclkaeaihyigdlvqrtevellktpnlgkkslteikdvlasrglslg >1lb2_B:C-terminal_domain_of_RNA_polymerase_alpha_subunit; title=STRUCTURE OF THE E. COLI ALPHA C-TERMINAL DOMAIN OF RNA POLYMERASE IN COMPLEX WITH CAP AND DNA organism=ESCHERICHIA COLI DNA sequence DC(K33):DG(J33) DT(K32):DA(J32) DT(K31):DA(J31) DT(K30):DA(J30) DT(K29):DA(J29) DT(K28):DA(J28) DT(K27):DA(J27) DC(K26):DG(J26) DC(K25):DG(J25) DT(K24):DA(J24) DA(K23):DT(J23) DA(K22):DT(J22) DA(K21):DT(J21) DA(K20):DT(J20) DT(K19):DA(J19) DG(K18):DC(J18) DT(K17):DA(J17) DG(K16):DC(J16) DA(K15):DT(J15) DT(K14):DA(J14) chainB ( 16) ARG265 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence dpillrpvddleltvRsanclkaeaihyigdlvqrtevellktpnlgkkslteikdvlasrglslgmrlenw >1lcc_A:lambda_repressor-like_DNA-binding_domains; title=STRUCTURE OF THE COMPLEX OF LAC REPRESSOR HEADPIECE AND AN 11 BASE- PAIR HALF-OPERATOR DETERMINED BY NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY AND RESTRAINED MOLECULAR DYNAMICS organism=ESCHERICHIA COLI DNA sequence DA(B1):DT(C11) DA(B2):DT(C10) DT(B3):DA(C9) DT(B4):DA(C8) DG(B5):DC(C7) DT(B6):DA(C6) DG(B7):DC(C5) DA(B8):DT(C4) DG(B9):DC(C3) DC(B10):DG(C2) DG(B11):DC(C1) chainA ( 17) TYR17 0 0 0 0 0 2 0 8 9 0 0 ( 18) GLN18 0 0 0 0 4 14 10 9 0 0 0 ( 19) THR19 0 0 0 1 0 0 0 0 0 0 0 ( 21) SER21 0 0 0 0 0 0 0 4 0 0 0 ( 22) ARG22 0 0 0 5 9 8 4 0 0 0 0 ( 26) GLN26 0 0 0 0 0 6 11 0 0 0 0 ( 29) HIS29 0 0 11 1 0 0 0 0 0 0 0 prot.sequence mkpvtlYdvaeyagvsYQTvSRvvnQasHvsaktrekveaamaelnyipNr >1lcd_A:lambda_repressor-like_DNA-binding_domains; title=STRUCTURE OF THE COMPLEX OF LAC REPRESSOR HEADPIECE AND AN 11 BASE- PAIR HALF-OPERATOR DETERMINED BY NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY AND RESTRAINED MOLECULAR DYNAMICS organism=ESCHERICHIA COLI DNA sequence DA(B1):DT(C11) DA(B2):DT(C10) DT(B3):DA(C9) DT(B4):DA(C8) DG(B5):DC(C7) DT(B6):DA(C6) DG(B7):DC(C5) DA(B8):DT(C4) DG(B9):DC(C3) DC(B10):DG(C2) DG(B11):DC(C1) chainA ( 17) TYR17 0 0 0 0 0 0 0 7 7 0 0 ( 18) GLN18 0 0 0 0 3 4 9 12 0 0 0 ( 21) SER21 0 0 0 0 0 0 0 4 0 0 0 ( 22) ARG22 0 0 0 1 7 9 8 0 0 0 0 ( 26) GLN26 0 0 0 0 0 8 8 0 0 0 0 ( 29) HIS29 0 0 10 1 0 0 0 0 0 0 0 prot.sequence mkpvtlydvaeyagvsYQtvSRvvnQasHvsaktrekveaamaelnyipnr >1le5_A:p53-like_transcription_factors;E_set_domains; title=CRYSTAL STRUCTURE OF A NF-KB HETERODIMER BOUND TO AN IFNB-KB organism=MUS MUSCULUS DNA sequence DG(C2):DC(D24) DG(C3):DC(D23) DG(C4):DC(D22) DA(C5):DT(D21) DA(C6):DT(D20) DA(C7):DT(D19) DT(C8):DA(D18) DT(C9):DA(D17) DC(C10):DG(D16) DC(C11):DG(D15) DT(C12):DA(D14) chainA ( 16) ARG33 0 0 0 0 0 0 0 0 12 12 0 ( 18) ARG35 0 0 0 0 0 0 0 5 4 1 0 ( 19) TYR36 0 0 0 0 0 0 3 4 0 0 0 ( 21) CYS38 0 0 0 0 0 0 0 2 0 0 0 ( 22) GLU39 0 0 0 0 0 0 0 25 11 0 0 ( 26) ALA43 0 0 0 0 0 0 0 0 0 0 1 (170) ARG187 0 0 0 0 0 0 7 7 1 0 0 prot.sequence mayveiieqpkqrgmRfRYkCEgrsAgsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd >1le5_AB:p53-like_transcription_factors;E_set_domains; title=CRYSTAL STRUCTURE OF A NF-KB HETERODIMER BOUND TO AN IFNB-KB organism=MUS MUSCULUS DNA sequence DG(C2):DC(D24) DG(C3):DC(D23) DG(C4):DC(D22) DA(C5):DT(D21) DA(C6):DT(D20) DA(C7):DT(D19) DT(C8):DA(D18) DT(C9):DA(D17) DC(C10):DG(D16) DC(C11):DG(D15) DT(C12):DA(D14) chainA ( 16) ARG33 0 0 0 0 0 0 0 0 12 12 0 ( 18) ARG35 0 0 0 0 0 0 0 5 4 1 0 ( 19) TYR36 0 0 0 0 0 0 3 4 0 0 0 ( 21) CYS38 0 0 0 0 0 0 0 2 0 0 0 ( 22) GLU39 0 0 0 0 0 0 0 25 11 0 0 ( 26) ALA43 0 0 0 0 0 0 0 0 0 0 1 (170) ARG187 0 0 0 0 0 0 7 7 1 0 0 chainB ( 17) ARG54 0 3 7 13 2 0 0 0 0 0 0 ( 20) TYR57 0 0 0 4 12 0 0 0 0 0 0 ( 23) GLU60 0 0 5 13 0 0 0 0 0 0 0 ( 27) HIS64 13 11 0 0 0 0 0 0 0 0 0 (204) LYS241 0 0 0 2 8 4 0 0 0 0 0 (206) PRO243 0 0 0 0 0 2 0 0 0 0 0 (235) LYS272 0 0 0 0 0 1 0 0 0 0 0 prot.sequence mayveiieqpkqrgmRfRYkCEgrsAgsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd/mgpylqileqpkqrgfRfrYvcEgpsHgglpgasseknkksypqvkicnyvgpakvivqlvtngknihlhahslvgkhcedgvctvtagpkdmvvgfanlgilhvtkkkvfetlearmteacirgynpgllvhsdlaylqaegggdrqltdrekeiirqaavqqtkemdlsvvrlmftaflpdstgsftrrlepvvsdaiydsKaPnasnlkivrmdrtagcvtggeeiyllcdKvqkddiqirfyeeeenggvwegfgdfsptdvhrqfaivfktpkykdvnitkpasvfvqlrrksdletsepkpflyype >1le5_EF:p53-like_transcription_factors;E_set_domains; title=CRYSTAL STRUCTURE OF A NF-KB HETERODIMER BOUND TO AN IFNB-KB organism=MUS MUSCULUS DNA sequence DG(G2):DC(H24) DG(G3):DC(H23) DG(G4):DC(H22) DA(G5):DT(H21) DA(G6):DT(H20) DA(G7):DT(H19) DT(G8):DA(H18) DT(G9):DA(H17) DC(G10):DG(H16) DC(G11):DG(H15) DT(G12):DA(H14) chainE ( 16) ARG33 0 0 0 0 0 0 0 0 10 14 0 ( 18) ARG35 0 0 0 0 0 0 0 0 2 9 5 ( 19) TYR36 0 0 0 0 0 0 5 4 0 0 0 ( 21) CYS38 0 0 0 0 0 0 0 1 0 0 0 ( 22) GLU39 0 0 0 0 0 0 0 8 5 0 0 (170) ARG187 0 0 0 0 0 0 4 12 2 0 0 (229) ARG246 0 0 0 3 0 0 0 0 0 0 0 chainF ( 17) ARG54 0 6 13 2 0 0 0 0 0 0 0 ( 19) ARG56 5 13 2 0 0 0 0 0 0 0 0 ( 20) TYR57 0 0 0 6 7 0 0 0 0 0 0 ( 22) CYS59 0 0 0 3 0 0 0 0 0 0 0 ( 23) GLU60 0 1 6 14 0 0 0 0 0 0 0 ( 27) HIS64 16 3 0 0 0 0 0 0 0 0 0 (204) LYS241 0 0 0 3 3 0 0 0 0 0 0 (235) LYS272 0 0 0 0 0 1 0 0 0 0 0 prot.sequence mayveiieqpkqrgmRfRYkCEgrsagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhRqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd/mgpylqileqpkqrgfRfRYvCEgpsHgglpgasseknkksypqvkicnyvgpakvivqlvtngknihlhahslvgkhcedgvctvtagpkdmvvgfanlgilhvtkkkvfetlearmteacirgynpgllvhsdlaylqaegggdrqltdrekeiirqaavqqtkemdlsvvrlmftaflpdstgsftrrlepvvsdaiydsKapnasnlkivrmdrtagcvtggeeiyllcdKvqkddiqirfyeeeenggvwegfgdfsptdvhrqfaivfktpkykdvnitkpasvfvqlrrksdletsepkpflyype >1le8_AB: title=CRYSTAL STRUCTURE OF THE MATA1/MATALPHA2-3A HETERODIMER BOUND TO DNA COMPLEX organism=Saccharomyces cerevisiae DNA sequence DT(D24):DA(C21) DG(D25):DC(C20) DA(D26):DT(C19) DT(D27):DA(C18) DG(D28):DC(C17) DT(D29):DA(C16) DA(D30):DT(C15) DA(D31):DT(C14) DA(D32):DT(C13) DT(D33):DA(C12) DT(D34):DA(C11) DT(D35):DA(C10) DT(D36):DA(C9) DT(D37):DA(C8) DA(D38):DT(C7) DC(D39):DG(C6) DA(D40):DT(C5) DT(D41):DA(C4) DG(D42):DC(C3) chainA ( 42) ARG115 0 0 0 0 0 0 3 8 0 0 0 0 0 0 0 0 0 0 0 ( 43) VAL116 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) ILE119 0 0 0 0 3 6 4 0 0 0 0 0 0 0 0 0 0 0 0 ( 47) ASN120 0 3 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 50) MET123 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 51) ARG124 11 8 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 3) HIS134 0 0 0 0 0 0 0 0 0 0 0 0 1 6 0 0 0 0 0 ( 4) ARG135 0 0 0 0 0 0 0 0 0 0 4 2 1 0 0 0 0 0 0 ( 47) ASN178 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 9 1 0 0 ( 50) ALA181 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 ( 51) ALA182 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 54) ALA185 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 prot.sequence kssispqarafleqvfrrkqslnskekeevakkcgitplqvRVwfINkrMRsk/rgHRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvAArrAkektitiapeladllsgepl >1le9_A:p53-like_transcription_factors;E_set_domains; title=CRYSTAL STRUCTURE OF A NF-KB HETERODIMER BOUND TO THE IG/HIV-KB SITI organism=? DNA sequence DT(C701):DC(D724) DG(C703):DC(D723) DG(C704):DC(D722) DA(C705):DT(D721) DC(C706):DG(D720) DT(C707):DA(D719) DT(C708):DA(D718) DT(C709):DA(D717) DC(C710):DG(D716) DC(C711):DG(D715) DT(C712):DA(D714) chainA ( 15) ARG33 0 0 0 0 0 0 0 0 9 11 0 ( 17) ARG35 0 0 0 0 0 0 0 0 1 8 7 ( 18) TYR36 0 0 0 0 0 0 4 6 0 0 0 ( 20) CYS38 0 0 0 0 0 0 0 1 0 0 0 ( 21) GLU39 0 0 0 0 0 0 0 7 6 0 0 ( 25) ALA43 0 0 0 0 0 0 0 0 0 0 1 (169) ARG187 0 0 0 0 0 0 1 9 1 0 0 prot.sequence ayveiieqpkqrgmRfRYkCEgrsAgsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd >1le9_AB:p53-like_transcription_factors;E_set_domains; title=CRYSTAL STRUCTURE OF A NF-KB HETERODIMER BOUND TO THE IG/HIV-KB SITI organism=MUS MUSCULUS DNA sequence DT(C701):DC(D724) DG(C703):DC(D723) DG(C704):DC(D722) DA(C705):DT(D721) DC(C706):DG(D720) DT(C707):DA(D719) DT(C708):DA(D718) DT(C709):DA(D717) DC(C710):DG(D716) DC(C711):DG(D715) DT(C712):DA(D714) chainA ( 15) ARG33 0 0 0 0 0 0 0 0 9 11 0 ( 17) ARG35 0 0 0 0 0 0 0 0 1 8 7 ( 18) TYR36 0 0 0 0 0 0 4 6 0 0 0 ( 20) CYS38 0 0 0 0 0 0 0 1 0 0 0 ( 21) GLU39 0 0 0 0 0 0 0 7 6 0 0 ( 25) ALA43 0 0 0 0 0 0 0 0 0 0 1 (169) ARG187 0 0 0 0 0 0 1 9 1 0 0 chainB ( 16) ARG54 0 10 6 1 0 0 0 0 0 0 0 ( 18) ARG56 0 15 0 0 0 0 0 0 0 0 0 ( 19) TYR57 0 0 0 3 3 0 0 0 0 0 0 ( 21) CYS59 0 0 0 1 0 0 0 0 0 0 0 ( 22) GLU60 0 2 4 7 0 0 0 0 0 0 0 ( 26) HIS64 1 6 0 0 0 0 0 0 0 0 0 (203) LYS241 0 0 0 2 8 5 0 0 0 0 0 prot.sequence ayveiieqpkqrgmRfRYkCEgrsAgsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd/gpylqileqpkqrgfRfRYvCEgpsHgglpgasseknkksypqvkicnyvgpakvivqlvtngknihlhahslvgkhcedgvctvtagpkdmvvgfanlgilhvtkkkvfetlearmteacirgynpgllvhsdlaylqaegggdrqltdrekeiirqaavqqtkemdlsvvrlmftaflpdstgsftrrlepvvsdaiydsKapnasnlkivrmdrtagcvtggeeiyllcdkvqkddiqirfyeeeenggvwegfgdfsptdvhrqfaivfktpkykdvnitkpasvfvqlrrksdletsepkpflyype >1le9_EF:p53-like_transcription_factors;E_set_domains; title=CRYSTAL STRUCTURE OF A NF-KB HETERODIMER BOUND TO THE IG/HIV-KB SITI organism=MUS MUSCULUS DNA sequence DG(H815):DC(G810) DG(H816):DT(G809) DA(H818):DT(G808) DA(H819):DT(G807) DG(H820):DC(G806) DT(H821):DA(G805) DC(H822):DG(G804) DC(H823):DG(G803) chainE ( 15) ARG33 5 0 0 0 0 0 0 0 ( 17) ARG35 1 0 0 0 0 0 0 0 ( 18) TYR36 0 4 14 0 0 0 0 0 ( 20) CYS38 0 4 0 0 0 0 0 0 ( 21) GLU39 10 13 0 0 0 0 0 0 (169) ARG187 1 3 26 0 0 0 0 0 chainF ( 16) ARG54 0 0 0 0 0 5 13 0 ( 18) ARG56 0 0 0 0 0 0 4 0 ( 19) TYR57 0 0 0 0 5 0 0 0 ( 22) GLU60 0 0 0 0 0 2 12 0 ( 26) HIS64 0 0 0 0 0 0 0 1 (203) LYS241 0 0 0 8 3 0 0 0 prot.sequence ayveiieqpkqrgmRfRYkCEgrsagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd/gpylqileqpkqrgfRfRYvcEgpsHgglpgasseknkksypqvkicnyvgpakvivqlvtngknihlhahslvgkhcedgvctvtagpkdmvvgfanlgilhvtkkkvfetlearmteacirgynpgllvhsdlaylqaegggdrqltdrekeiirqaavqqtkemdlsvvrlmftaflpdstgsftrrlepvvsdaiydsKapnasnlkivrmdrtagcvtggeeiyllcdkvqkddiqirfyeeeenggvwegfgdfsptdvhrqfaivfktpkykdvnitkpasvfvqlrrksdletsepkpflyype >1lei_AB:p53-like_transcription_factors;E_set_domains; title=THE KB DNA SEQUENCE FROM THE HLV-LTR FUNCTIONS AS AN ALLOSTERIC REGULATOR OF HIV TRANSCRIPTION organism=MUS MUSCULUS DNA sequence DC(D2):DG(C16) DT(D3):DA(C15) DG(D4):DC(C14) 5IU(D5):DA(C13) DA(D6):DT(C12) DC(D7):DG(C11) 5IU(D8):DA(C10) 5IU(D9):DA(C9) 5IU(D10):DA(C8) DC(D11):DG(C7) DC(D12):DG(C6) DC(D13):DG(C5) DT(D14):DA(C4) DG(D15):DC(C3) DA(D16):DT(C2) DG(D17):DC(C1) chainA ( 15) ARG33 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 ( 17) ARG35 0 15 9 2 0 0 0 0 0 0 0 0 0 0 0 0 ( 18) TYR36 0 0 0 0 4 3 0 0 0 0 0 0 0 0 0 0 ( 20) CYS38 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 ( 21) GLU39 0 0 3 14 13 0 0 0 0 0 0 0 0 0 0 0 (169) ARG187 0 0 0 0 6 4 0 0 0 0 0 0 0 0 0 0 chainB ( 16) ARG54 0 0 0 0 0 0 0 0 1 6 9 0 0 0 0 0 ( 18) ARG56 0 0 0 0 0 0 0 0 0 0 7 1 0 0 0 0 ( 19) TYR57 0 0 0 0 0 0 0 5 4 0 0 0 0 0 0 0 ( 21) CYS59 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 ( 22) GLU60 0 0 0 0 0 0 0 0 15 8 0 0 0 0 0 0 ( 26) HIS64 0 0 0 0 0 0 0 0 0 0 6 11 0 0 0 0 (203) LYS241 0 0 0 0 0 0 0 13 5 0 0 0 0 0 0 0 prot.sequence ayveiieqpkqrgmrfRYkCEgrsagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd/gpylqileqpkqrgfRfRyvcEgpsHgglpgasseknkksypqvkicnyvgpakvivqlvtngknihlhahslvgkhcedgvctvtagpkdmvvgfanlgilhvtkkkvfetlearmteacirgynpgllvhsdlaylqaegggdrqltdrekeiirqaavqqtkemdlsvvrlmftaflpdstgsftrrlepvvsdaiydskapnasnlkivrmdrtagcvtggeeiyllcdkvqkddiqirfyeeeenggvwegfgdfsptdvhrqfaivfktpkykdvnitkpasvfvqlrrksdletsepkpflyype >1lei_B:p53-like_transcription_factors;E_set_domains; title=THE KB DNA SEQUENCE FROM THE HLV-LTR FUNCTIONS AS AN ALLOSTERIC REGULATOR OF HIV TRANSCRIPTION organism=MUS MUSCULUS DNA sequence DC(C1):DG(D17) DT(C2):DA(D16) DC(C3):DG(D15) DA(C4):DT(D14) DG(C5):DC(D13) DG(C6):DC(D12) DG(C7):DC(D11) DA(C8):5IU(D10) DA(C9):5IU(D9) DA(C10):5IU(D8) DG(C11):DC(D7) DT(C12):DA(D6) DA(C13):5IU(D5) DC(C14):DG(D4) DA(C15):DT(D3) DG(C16):DC(D2) chainB ( 16) ARG54 0 0 0 0 0 9 6 1 0 0 0 0 0 0 0 0 ( 18) ARG56 0 0 0 0 1 7 0 0 0 0 0 0 0 0 0 0 ( 19) TYR57 0 0 0 0 0 0 0 4 5 0 0 0 0 0 0 0 ( 21) CYS59 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 22) GLU60 0 0 0 0 0 0 8 15 0 0 0 0 0 0 0 0 ( 26) HIS64 0 0 0 0 11 6 0 0 0 0 0 0 0 0 0 0 (203) LYS241 0 0 0 0 0 0 0 5 13 0 0 0 0 0 0 0 prot.sequence gpylqileqpkqrgfRfRyvcEgpsHgglpgasseknkksypqvkicnyvgpakvivqlvtngknihlhahslvgkhcedgvctvtagpkdmvvgfanlgilhvtkkkvfetlearmteacirgynpgllvhsdlaylqaegggdrqltdrekeiirqaavqqtkemdlsvvrlmftaflpdstgsftrrlepvvsdaiydskapnasnlkivrmdrtagcvtggeeiyllcdkvqkddiqirfyeeeenggvwegfgdfsptdvhrqfaivfktpkykdvnitkpasvfvqlrrksdletsepkpflyype >1lfu_P:Homeodomain-like; title=NMR SOLUTION STRUCTURE OF THE EXTENDED PBX HOMEODOMAIN BOUND TO DNA organism=MUS MUSCULUS DNA sequence DG(B15):DC(A14) DG(B16):DC(A13) DG(B17):DC(A12) DC(B18):DG(A11) DA(B19):DT(A10) DA(B20):DT(A9) DT(B21):DA(A8) DC(B22):DG(A7) DA(B23):DT(A6) DT(B24):DA(A5) DG(B25):DC(A4) DC(B26):DG(A3) DG(B27):DC(A2) DC(B28):DG(A1) chainP ( 4) ARG3 0 0 0 0 0 3 9 0 0 0 0 0 0 0 ( 5) LYS4 0 0 0 0 0 0 0 0 11 17 2 0 0 0 ( 6) ARG5 0 0 0 0 0 0 0 0 5 0 0 0 0 0 ( 51) ASN47 0 0 0 0 0 3 0 0 0 0 0 0 0 0 ( 55) ASN51 0 0 0 0 0 2 6 0 0 0 0 0 0 0 ( 58) ILE54 0 0 0 0 6 1 0 0 0 0 0 0 0 0 prot.sequence marRKRrnfnkqateilneyfyshlsnpypseeakeelakksgitvsqvsNwfgNkrIrykknigkfqeeaniyaaktavta >1lli_AB:lambda_repressor-like_DNA-binding_domains; title=THE CRYSTAL STRUCTURE OF A MUTANT PROTEIN WITH ALTERED BUT IMPROVED HYDROPHOBIC CORE PACKING organism=Enterobacteria phage lambda DNA sequence DA(D2):DT(E20) DT(D3):DA(E19) DA(D4):DT(E18) DC(D5):DG(E17) DC(D6):DG(E16) DA(D7):DT(E15) DC(D8):DG(E14) DT(D9):DA(E13) DG(D10):DC(E12) DG(D11):DC(E11) DC(D12):DG(E10) DG(D13):DC(E9) DG(D14):DC(E8) DT(D15):DA(E7) DG(D16):DC(E6) DA(D17):DT(E5) DT(D18):DA(E4) DA(D19):DT(E3) DT(D20):DA(E2) chainA ( 1) LYS4 0 0 0 0 0 0 6 7 0 0 0 0 0 0 0 0 0 0 0 ( 41) GLN44 0 13 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 42) SER45 0 0 0 4 9 6 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 52) ASN55 0 0 0 0 0 0 7 7 0 0 0 0 0 0 0 0 0 0 0 chainB ( 1) SER1 0 0 0 0 0 0 0 0 0 7 1 0 0 0 0 0 0 0 0 ( 2) THR2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 ( 3) LYS3 0 0 0 0 0 0 0 0 1 11 0 0 0 0 0 0 0 0 0 ( 4) LYS4 0 0 0 0 0 0 0 0 0 0 0 11 7 0 0 0 0 0 0 ( 44) GLN44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 11 11 0 ( 45) SER45 0 0 0 0 0 0 0 0 0 0 0 0 0 7 10 5 0 0 0 ( 54) ILE54 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 ( 55) ASN55 0 0 0 0 0 0 0 0 0 0 0 6 6 0 0 0 0 0 0 prot.sequence KkpltqeqledarrlkaiyekkknelglsqesladklgmgQSgigalfngiNalnaynaallakilkvsveefspsiareiyemyeavs/STKKkpltqeqledarrlkaiyekkknelglsqesladklgmgQSgigalfngINalnaynaallakilkvsveefspsiareiyemyeavs >1lli_B:lambda_repressor-like_DNA-binding_domains; title=THE CRYSTAL STRUCTURE OF A MUTANT PROTEIN WITH ALTERED BUT IMPROVED HYDROPHOBIC CORE PACKING organism=Enterobacteria phage lambda DNA sequence DA(E2):DT(D20) DT(E3):DA(D19) DA(E4):DT(D18) DT(E5):DA(D17) DC(E6):DG(D16) DA(E7):DT(D15) DC(E8):DG(D14) DC(E9):DG(D13) DG(E10):DC(D12) DC(E11):DG(D11) DC(E12):DG(D10) DA(E13):DT(D9) DG(E14):DC(D8) DT(E15):DA(D7) DG(E16):DC(D6) DG(E17):DC(D5) DT(E18):DA(D4) DA(E19):DT(D3) DT(E20):DA(D2) chainB ( 1) SER1 0 0 0 0 0 0 0 0 1 7 0 0 0 0 0 0 0 0 0 ( 2) THR2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 ( 3) LYS3 0 0 0 0 0 0 0 0 0 11 1 0 0 0 0 0 0 0 0 ( 4) LYS4 0 0 0 0 0 0 7 11 0 0 0 0 0 0 0 0 0 0 0 ( 44) GLN44 0 11 11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 45) SER45 0 0 0 5 10 7 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 54) ILE54 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 55) ASN55 0 0 0 0 0 0 6 6 0 0 0 0 0 0 0 0 0 0 0 prot.sequence STKKkpltqeqledarrlkaiyekkknelglsqesladklgmgQSgigalfngINalnaynaallakilkvsveefspsiareiyemyeavs >1llm_CD: title=CRYSTAL STRUCTURE OF A ZIF23-GCN4 CHIMERA BOUND TO DNA organism=MUS MUSCULUS, SACCHAROMYCES CEREVISIAE DNA sequence DC(B22):DG(A13) DC(B23):DG(A12) DC(B24):DG(A11) DA(B25):DT(A10) DC(B26):DG(A9) DG(B27):DC(A8) DC(B28):DG(A7) DG(B29):DC(A6) DT(B30):DA(A5) DG(B31):DC(A4) DG(B32):DC(A3) DG(B33):DC(A2) chainC ( 15) ARG115 0 0 0 0 0 0 0 0 0 16 14 10 ( 17) ASP117 0 0 0 0 0 0 0 0 0 0 1 12 ( 18) HIS118 0 0 0 0 0 0 0 0 26 11 0 0 ( 21) THR121 0 0 0 0 0 0 0 0 1 0 0 0 ( 43) ARG143 0 0 0 0 0 0 12 13 11 0 0 0 ( 45) ASP145 0 0 0 0 0 0 0 2 8 5 0 0 ( 46) GLU146 0 0 0 0 0 2 6 0 0 0 0 0 ( 49) ARG149 0 0 0 0 0 0 5 6 4 0 0 0 chainD ( 15) ARG215 3 14 11 0 0 0 0 0 0 0 0 0 ( 17) ASP217 8 2 0 0 0 0 0 0 0 0 0 0 ( 18) HIS218 0 0 11 26 0 0 0 0 0 0 0 0 ( 21) THR221 0 0 0 1 0 0 0 0 0 0 0 0 ( 43) ARG243 0 0 0 11 12 12 0 0 0 0 0 0 ( 45) ASP245 0 0 3 8 2 0 0 0 0 0 0 0 ( 46) GLU246 0 0 0 0 0 6 1 0 0 0 0 0 ( 49) ARG249 0 0 0 0 6 8 7 3 0 0 0 0 prot.sequence mkpfqcricmrnfsRsDHltThirthtgekpfacdicgrkfaRsDErkRhrdiqhilpiledkveellsknyhlenevarlkklvge/mkpfqcricmrnfsRsDHltThirthtgekpfacdicgrkfaRsDErkRhrdiqhilpiledkveellsknyhlenevarlkklv >1lmb_34:lambda_repressor-like_DNA-binding_domains; title=REFINED 1.8 ANGSTROM CRYSTAL STRUCTURE OF THE LAMBDA REPRESSOR- OPERATOR COMPLEX organism=ENTEROBACTERIA PHAGE LAMBDA DNA sequence DA(222):DT(120) DT(223):DA(119) DA(224):DT(118) DT(225):DA(117) DC(226):DG(116) DA(227):DT(115) DC(228):DG(114) DC(229):DG(113) DG(230):DC(112) DC(231):DG(111) DC(232):DG(110) DA(233):DT(19) DG(234):DC(18) DT(235):DA(17) DG(236):DC(16) DG(237):DC(15) DT(238):DA(14) DA(239):DT(13) DT(240):DA(12) chain3 ( 29) GLU34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 ( 39) GLN44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 10 0 ( 40) SER45 0 0 0 0 0 0 0 0 0 0 0 0 0 3 7 6 0 0 0 ( 50) ASN55 0 0 0 0 0 0 0 0 0 0 0 9 6 0 0 0 0 0 0 chain4 ( 3) LYS3 0 0 0 0 0 0 0 14 10 10 0 0 0 0 0 0 0 0 0 ( 4) LYS4 0 0 0 0 0 0 9 10 0 0 0 0 0 0 0 0 0 0 0 ( 34) GLU34 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 44) GLN44 0 11 11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 45) SER45 0 0 0 5 9 7 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 55) ASN55 0 0 0 0 0 0 6 6 0 0 0 0 0 0 0 0 0 0 0 prot.sequence pltqeqledarrlkaiyekkknelglsqEsvadkmgmgQSgvgalfngiNalnaynaallakilkvsveefspsiareiyemyeavs/stKKkpltqeqledarrlkaiyekkknelglsqEsvadkmgmgQSgvgalfngiNalnaynaallakilkvsveefspsiareiyemyeavs >1lpq_A:Eukaryotic_DNA_topoisomerase_I,_N-terminal_DNA-binding_fragment;DNA_breaking-rejoining_enzymes;Eukaryotic_DNA_topoisomerase_I,_dispensable_insert_domain; title=HUMAN DNA TOPOISOMERASE I (70 KDA) IN NON-COVALENT COMPLEX WITH A 22 BASE PAIR DNA DUPLEX CONTAINING AN 8-OXOG LESION organism=Homo sapiens DNA sequence DA(B1):DT(C122) DA(B2):DT(C121) DA(B3):DT(C120) DA(B4):DT(C119) DA(B5):DT(C118) DG(B6):DC(C117) DA(B7):DT(C116) DC(B8):DG(C115) DT(B9):DA(C114) DT(B10):DA(C113) 8OG(B11):DC(C112) DG(B12):DC(C111) DA(B13):DT(C110) DA(B14):DT(C109) DA(B15):DT(C108) DA(B16):DT(C107) DA(B17):DT(C106) DT(B18):DA(C105) DT(B19):DA(C104) DT(B20):DA(C103) DT(B21):DA(C102) DT(B22):DA(C101) chainA (163) ARG364 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 (225) TYR426 0 0 0 0 0 0 6 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (227) MET428 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 (290) ASN491 0 0 0 0 0 5 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (331) LYS532 0 0 0 0 0 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 (510) THR718 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 (514) ASN722 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 prot.sequence kwkwweeerypegikwkflehkgpvfappyeplpenvkfyydgkvmklspkaeevatffakmldheyttkeifrknffkdwrkemtneekniitnlskcdftqmsqyfkaqtearkqmskeeklkikeenekllkeygfcimdnhkerianfkieppglfrgRgnhpkmgmlkrrimpediiincskdakvpspppghkwkevrhdnkvtwlvswteniqgsikYiMlnpssrikgekdwqkyetarrlkkcvdkirnqyredwkskemkvrqravalyfidklalragNekeegetadtvgccslrvehinlhpeldgqeyvvefdflgKdsiryynkvpvekrvfknlqlfmenkqpeddlfdrlntgilnkhlqdlmegltakvfrtynasitlqqqlkeltapdenipakilsynranravailcnhqeksmmnlqtkidakkeqladarrdlksakadakvmkdaktkkvveskkkavqrleeqlmklevqatdreenkqialgtsklnfldpritvawckkwgvpiekiynktqrekfawaidmadedyef >1lq1_AB: title=DNA COMPLEXED STRUCTURE OF THE KEY TRANSCRIPTION FACTOR INITIATING DEVELOPMENT IN SPORULATION BACTERIA organism=Bacillus subtilis DNA sequence DC(H116):DG(G16) DA(H117):DT(G15) DA(H118):DT(G14) DA(H119):DT(G13) DA(H120):DT(G12) DT(H121):DA(G11) DT(H122):DA(G10) DC(H123):DG(G9) DG(H124):DC(G8) DA(H125):DT(G7) DC(H126):DG(G6) DA(H127):DT(G5) DC(H128):DG(G4) DG(H129):DC(G3) DA(H130):DT(G2) chainA ( 45) THR194 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 ( 61) SER210 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 ( 64) GLU213 0 0 0 0 0 0 2 10 0 0 0 0 0 0 0 ( 65) ARG214 0 0 0 0 0 0 0 0 0 11 13 7 0 0 0 ( 68) ARG217 0 0 0 0 0 0 0 17 11 0 0 0 0 0 0 ( 69) HIS218 0 0 0 0 0 0 0 0 0 0 0 6 2 0 0 chainB ( 63) ARG214 12 13 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 67) HIS218 0 4 4 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence kknldasitsiiheigvpahikgylylreaismvyndiellgsiTkvlypdiakkfnttaSrvERaiRHaievawsrgnidsisslfakptnsefiamvadklrleh/nldasitsiiheigvpahikgylylreaismvyndiellgsitkvlypdiakkfnttasrveRairHaievawsrgnidsisslfakptnsefiamvadklrl >1lws_A:Hedgehog/intein_Hint_domain;Homing_endonucleases; title=CRYSTAL STRUCTURE OF THE INTEIN HOMING ENDONUCLEASE PI-SCEI BOUND TO ITS RECOGNITION SEQUENCE organism=Saccharomyces cerevisiae DNA sequence DA(C4):DT(B35) DT(C5):DA(B34) DT(C6):DA(B33) DT(C7):DA(B32) DC(C8):DG(B31) DA(C9):DT(B30) DT(C10):DA(B29) DT(C11):DA(B28) DA(C12):DT(B27) DC(C13):DG(B26) DC(C14):DG(B25) DT(C15):DA(B24) DC(C16):DG(B23) DT(C17):DA(B22) DT(C18):DA(B21) DT(C19):DA(B20) DC(C20):DG(B19) DT(C21):DA(B18) DC(C22):DG(B17) DC(C23):DG(B16) DG(C24):DC(B15) DC(C25):DG(B14) DA(C26):DT(B13) DC(C27):DG(B12) DC(C28):DG(B11) DC(C29):DG(B10) DG(C30):DC(B9) DA(C31):DT(B8) DC(C32):DG(B7) DA(C33):DT(B6) DT(C34):DA(B5) DA(C35):DT(B4) DG(C36):DC(B3) DA(C37):DT(B2) chainA ( 55) GLN55 0 0 0 0 0 0 0 0 0 0 0 0 12 6 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 57) ARG57 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 90) ARG90 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 94) ARG94 0 0 1 6 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 96) ILE96 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (101) GLU103 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (125) SER127 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (127) SER129 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (165) SER169 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (166) HIS170 0 0 0 0 0 0 8 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (216) LEU220 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 (219) ARG223 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 (301) TYR328 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (306) HIS333 0 0 0 0 0 0 0 0 0 0 0 0 0 8 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (309) LYS336 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (313) LYS340 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (337) ASN364 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (339) GLU366 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (344) ASP371 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 (348) THR375 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 (350) HIS377 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 12 0 0 0 0 0 0 0 0 0 0 0 0 (353) SER380 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 (357) TYR384 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence cfakgtnvlmadgsiecienievgnkvmgkdgrpreviklprgretmysvvqksQhRahksdssrevpellkftcnathelvvrtprsvRrlsRtIkgvfEvitfemgqkkapdgrivelvkevSkSypisperanelvesyrkasnkayfewtieardlsllgSHvrkatyqtyapilyendhffdymqkskfhltiegpkvlayllglwigdgLsdRatfsvdsrdtslmervteyaeklnlcavaktvnlysenplwdaivglgflkdgvknipsflstdnigtretflaglidsdgYvtdeHgiKatiKtihtsvrdglvslarslglvvsvNaEpakvDmngTkHkiSyaiYmsggdvllnvlskcagskkfrpapaaafarecrgfyfelqelkeddyygitlsddsdhqfllanqvvvhn >1lwv_A:DNA-glycosylase;TATA-box_binding_protein-like; title=BOROHYDRIDE-TRAPPED HOGG1 INTERMEDIATE STRUCTURE CO-CRYSTALLIZED WITH 8-AMINOGUANINE organism=Homo sapiens DNA sequence DG(E16):DC(D15) DC(E17):DG(D14) DG(E18):DC(D13) DT(E19):DA(D12) DC(E20):DG(D11) DC(E21):DG(D10) DA(E22):DT(D9) DG(E24):DC(D8) DT(E25):DC(D7) DC(E26):DA(D6) DT(E27):DG(D5) DA(E28):DA(D4) DC(E29):DT(D3) DC(E30):DG(D2) chainA (138) ASN149 0 0 0 0 0 0 7 34 1 0 0 0 0 0 (139) ASN150 0 0 0 0 0 0 2 0 0 0 0 0 0 0 (140) ASN151 0 0 0 0 0 1 4 0 0 0 0 0 0 0 (143) ARG154 0 0 0 0 0 0 15 11 0 0 0 0 0 0 (192) TYR203 0 0 0 0 0 0 0 22 5 0 0 0 0 0 (193) ARG204 0 0 0 0 0 0 0 11 0 0 0 0 0 0 (282) PRO293 0 0 0 0 0 0 0 0 0 0 0 0 1 0 prot.sequence gseghrtlastpalwasipcprselrldlvlpsgqsfrwreqspahwsgvladqvwtltqteeqlhctvyrsqasrptpdeleavrkyfqldvtlaqlyhhwgsvdshfqevaqkfqgvrllrqdpieclfsficsSNNNiaRitgmverlcqafgprliqlddvtyhgfpslqalagpeveahlrklglgYRaryvsasaraileeqgglawlqqlressyeeahkalcilpgvgtkvadciclmaldkpqavpvdvhmwhiaqrdyswhpttsqakgpsPqtnkelgnffrslwgpyagwaqavlfsadlrq >1lww_A:DNA-glycosylase;TATA-box_binding_protein-like; title=BOROHYDRIDE-TRAPPED HOGG1 INTERMEDIATE STRUCTURE CO-CRYSTALLIZED WITH 8-BROMOGUANINE organism=Homo sapiens DNA sequence DG(E16):DC(D15) DC(E17):DG(D14) DG(E18):DC(D13) DT(E19):DA(D12) DC(E20):DG(D11) DC(E21):DG(D10) DA(E22):DT(D9) DG(E24):DC(D8) DT(E25):DC(D7) DC(E26):DA(D6) DT(E27):DG(D5) DA(E28):DA(D4) DC(E29):DT(D3) DC(E30):DG(D2) chainA (138) ASN149 0 0 0 0 0 0 8 34 3 0 0 0 0 0 (139) ASN150 0 0 0 0 0 0 3 0 0 0 0 0 0 0 (140) ASN151 0 0 0 0 0 1 5 0 0 0 0 0 0 0 (143) ARG154 0 0 0 0 0 0 11 10 0 0 0 0 0 0 (192) TYR203 0 0 0 0 0 0 0 23 9 0 0 0 0 0 (193) ARG204 0 0 0 0 0 0 0 11 0 0 0 0 0 0 (196) TYR207 0 0 0 0 0 0 0 0 1 0 0 0 0 0 (282) PRO293 0 0 0 0 0 0 0 0 0 0 0 0 1 0 prot.sequence gseghrtlastpalwasipcprselrldlvlpsgqsfrwreqspahwsgvladqvwtltqteeqlhctvyrsqasrptpdeleavrkyfqldvtlaqlyhhwgsvdshfqevaqkfqgvrllrqdpieclfsficsSNNNiaRitgmverlcqafgprliqlddvtyhgfpslqalagpeveahlrklglgYRarYvsasaraileeqgglawlqqlressyeeahkalcilpgvgtkvadciclmaldkpqavpvdvhmwhiaqrdyswhpttsqakgpsPqtnkelgnffrslwgpyagwaqavlfsadlrq >1lwy_A:DNA-glycosylase;TATA-box_binding_protein-like; title=HOGG1 BOROHYDRIDE-TRAPPED INTERMEDIATE WITHOUT 8-OXOGUANINE organism=Homo sapiens DNA sequence DG(E16):DC(D15) DC(E17):DG(D14) DG(E18):DC(D13) DT(E19):DA(D12) DC(E20):DG(D11) DC(E21):DG(D10) DA(E22):DT(D9) PED(E23):DC(D8) DG(E24):DC(D7) DT(E25):DA(D6) DC(E26):DG(D5) DT(E27):DA(D4) DA(E28):DT(D3) DC(E29):DG(D2) chainA (138) ASN149 0 0 0 0 0 0 16 5 30 0 0 0 0 0 (139) ASN150 0 0 0 0 0 0 6 0 0 0 0 0 0 0 (140) ASN151 0 0 0 0 0 1 8 0 0 0 0 0 0 0 (143) ARG154 0 0 0 0 0 0 20 11 0 0 0 0 0 0 (192) TYR203 0 0 0 0 0 0 0 13 14 0 0 0 0 0 (193) ARG204 0 0 0 0 0 0 0 11 0 0 0 0 0 0 (196) TYR207 0 0 0 0 0 0 0 0 0 1 0 0 0 0 (282) PRO293 0 0 0 0 0 0 0 0 0 0 0 0 2 0 prot.sequence gseghrtlastpalwasipcprselrldlvlpsgqsfrwreqspahwsgvladqvwtltqteeqlhctvyrsqasrptpdeleavrkyfqldvtlaqlyhhwgsvdshfqevaqkfqgvrllrqdpieclfsficsSNNNiaRitgmverlcqafgprliqlddvtyhgfpslqalagpeveahlrklglgYRarYvsasaraileeqgglawlqqlressyeeahkalcilpgvgtkvadciclmaldkpqavpvdvhmwhiaqrdyswhpttsqakgpsPqtnkelgnffrslwgpyagwaqavlfsadlrq >1m0e_A:S-adenosyl-L-methionine-dependent_methyltransferases; title=ZEBULARINE: A NOVEL DNA METHYLATION INHIBITOR THAT FORMS A COVALENT COMPLEX WITH DNA METHYLTRANSFERASE organism=Haemophilus haemolyticus DNA sequence DG(D422):DC(C413) DT(D423):DA(C412) DC(D424):DG(C411) DA(D425):DT(C410) DG(D426):DC(C409) DG(D428):DC(C407) DC(D429):DG(C406) DA(D430):DT(C405) DT(D431):DA(C404) DG(D432):DC(C403) DG(D433):DC(C402) chainA ( 86) ILE86 0 0 2 2 1 0 0 0 0 0 0 ( 87) SER87 0 0 0 0 10 8 0 0 0 0 0 (228) ARG228 0 0 0 1 0 0 0 0 0 0 0 (237) GLN237 0 0 0 0 34 23 0 0 0 0 0 (239) GLU239 0 0 0 0 0 1 1 0 0 0 0 (240) ARG240 0 0 0 9 12 0 0 0 0 0 0 (254) TYR254 0 0 0 0 0 0 1 0 0 0 0 (260) ALA260 0 0 0 0 0 0 0 1 0 0 0 (261) LYS261 0 0 0 0 0 0 0 2 0 0 0 prot.sequence mieikdkqltglrfidlfaglggfrlalescgaecvysnewdkyaqevyemnfgekpegditqvnektipdhdilcagfpcqafsISgkqkgfedsrgtlffdiarivrekkpkvvfmenvknfashdngntlevvkntmneldysfhakvlnaldygipqkreriymicfrndlniqnfqfpkpfelntfvkdlllpdsevehlvidrkdlvmtnqeieqttpktvRlgivgkggQgERiystrgiaitlsaYgggifAKtggylvngktrklhprecarvmgypdsykvhpstsqaykqfgnsvvinvlqyiaynigsslnfkpy >1m18_ABCDEFGH:Histone-fold;lambda_repressor-like_DNA-binding_domains;p53-like_transcription_factors;Nucleic_acid-binding_proteins;P-loop_containing_nucleoside_triphosphate_hydrolases; title=LIGAND BINDING ALTERS THE STRUCTURE AND DYNAMICS OF NUCLEOSOMAL DNA organism=XENOPUS LAEVIS DNA sequence DA(I1):DT(J292) DT(I2):DA(J291) DC(I3):DG(J290) DA(I4):DT(J289) DA(I5):DT(J288) DT(I6):DA(J287) DA(I7):DT(J286) DT(I8):DA(J285) DC(I9):DG(J284) DC(I10):DG(J283) DA(I11):DT(J282) DC(I12):DG(J281) DC(I13):DG(J280) DT(I14):DA(J279) DG(I15):DC(J278) DC(I16):DG(J277) DA(I17):DT(J276) DG(I18):DC(J275) DA(I19):DT(J274) DT(I20):DA(J273) DT(I21):DA(J272) DC(I22):DG(J271) DT(I23):DA(J270) DA(I24):DT(J269) DC(I25):DG(J268) DC(I26):DG(J267) DA(I27):DT(J266) DA(I28):DT(J265) DA(I29):DT(J264) DA(I30):DT(J263) DG(I31):DC(J262) DT(I32):DA(J261) DG(I33):DC(J260) DT(I34):DA(J259) DA(I35):DT(J258) DT(I36):DA(J257) DT(I37):DA(J256) DT(I38):DA(J255) DG(I39):DC(J254) DG(I40):DC(J253) DA(I41):DT(J252) DA(I42):DT(J251) DA(I43):DT(J250) DC(I44):DG(J249) DT(I45):DA(J248) DG(I46):DC(J247) DC(I47):DG(J246) DT(I48):DA(J245) DC(I49):DG(J244) DC(I50):DG(J243) DA(I51):DT(J242) DT(I52):DA(J241) DC(I53):DG(J240) DA(I54):DT(J239) DA(I55):DT(J238) DA(I56):DT(J237) DA(I57):DT(J236) DG(I58):DC(J235) DG(I59):DC(J234) DC(I60):DG(J233) DA(I61):DT(J232) DT(I62):DA(J231) DG(I63):DC(J230) DT(I64):DA(J229) DT(I65):DA(J228) DC(I66):DG(J227) DA(I67):DT(J226) DG(I68):DC(J225) DC(I69):DG(J224) DG(I70):DC(J223) DG(I71):DC(J222) DA(I72):DT(J221) DA(I73):DT(J220) DT(I74):DA(J219) DT(I75):DA(J218) DC(I76):DG(J217) DC(I77):DG(J216) DG(I78):DC(J215) DC(I79):DG(J214) DT(I80):DA(J213) DG(I81):DC(J212) DA(I82):DT(J211) DA(I83):DT(J210) DC(I84):DG(J209) DA(I85):DT(J208) DT(I86):DA(J207) DG(I87):DC(J206) DC(I88):DG(J205) DC(I89):DG(J204) DT(I90):DA(J203) DT(I91):DA(J202) DT(I92):DA(J201) DT(I93):DA(J200) DG(I94):DC(J199) DA(I95):DT(J198) DT(I96):DA(J197) DG(I97):DC(J196) DG(I98):DC(J195) DA(I99):DT(J194) DG(I100):DC(J193) DC(I101):DG(J192) DA(I102):DT(J191) DG(I103):DC(J190) DT(I104):DA(J189) DT(I105):DA(J188) DT(I106):DA(J187) DC(I107):DG(J186) DC(I108):DG(J185) DA(I109):DT(J184) DA(I110):DT(J183) DA(I111):DT(J182) DT(I112):DA(J181) DA(I113):DT(J180) DC(I114):DG(J179) DA(I115):DT(J178) DC(I116):DG(J177) DT(I117):DA(J176) DT(I118):DA(J175) DT(I119):DA(J174) DT(I120):DA(J173) DG(I121):DC(J172) DG(I122):DC(J171) DT(I123):DA(J170) DA(I124):DT(J169) DG(I125):DC(J168) DA(I126):DT(J167) DA(I127):DT(J166) DT(I128):DA(J165) DC(I129):DG(J164) DT(I130):DA(J163) DG(I131):DC(J162) DC(I132):DG(J161) DA(I133):DT(J160) DG(I134):DC(J159) DG(I135):DC(J158) DT(I136):DA(J157) DG(I137):DC(J156) DG(I138):DC(J155) DA(I139):DT(J154) DT(I140):DA(J153) DA(I141):DT(J152) DT(I142):DA(J151) DT(I143):DA(J150) DG(I144):DC(J149) DA(I145):DT(J148) DT(I146):DA(J147) chainA ( 2) HIS439 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 ( 3) ARG440 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 4) TYR441 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 28) LEU465 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) ARG483 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 22) ARG45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainC ( 29) ARG842 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainD chainE ( 4) ARG640 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) LEU665 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 47) ARG683 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainF ( 13) PRO232 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 16) ARG235 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 26) ARG245 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainG chainH prot.sequence pHRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera/dniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/aktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt/trkesyaiyvykvlkqvhpdtgisskamSimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak/kphRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera/kvlrdniqgitkPaiRrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/aktrssraglqfPvgRvhrllrkgnYaervgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk/trkesyaiyvykVlkQvhpdtgissKamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak >1m19_ABCDEFGH:Histone-fold;lambda_repressor-like_DNA-binding_domains;p53-like_transcription_factors;Nucleic_acid-binding_proteins;P-loop_containing_nucleoside_triphosphate_hydrolases; title=LIGAND BINDING ALTERS THE STRUCTURE AND DYNAMICS OF NUCLEOSOMAL DNA organism=XENOPUS LAEVIS DNA sequence DA(J147):DT(I146) DT(J148):DA(I145) DC(J149):DG(I144) DA(J150):DT(I143) DA(J151):DT(I142) DT(J152):DA(I141) DA(J153):DT(I140) DT(J154):DA(I139) DC(J155):DG(I138) DC(J156):DG(I137) DA(J157):DT(I136) DC(J158):DG(I135) DC(J159):DG(I134) DT(J160):DA(I133) DG(J161):DC(I132) DC(J162):DG(I131) DA(J163):DT(I130) DG(J164):DC(I129) DA(J165):DT(I128) DT(J166):DA(I127) DT(J167):DA(I126) DC(J168):DG(I125) DT(J169):DA(I124) DA(J170):DT(I123) DC(J171):DG(I122) DC(J172):DG(I121) DA(J174):DT(I119) DA(J175):DT(I118) DA(J176):DT(I117) DG(J177):DC(I116) DT(J178):DA(I115) DG(J179):DC(I114) DT(J180):DA(I113) DA(J181):DT(I112) DT(J182):DA(I111) DT(J183):DA(I110) DT(J184):DA(I109) DG(J185):DC(I108) DG(J186):DC(I107) DA(J187):DT(I106) DA(J188):DT(I105) DA(J189):DT(I104) DC(J190):DG(I103) DT(J191):DA(I102) DG(J192):DC(I101) DC(J193):DG(I100) DT(J194):DA(I99) DC(J195):DG(I98) DC(J196):DG(I97) DA(J197):DT(I96) DT(J198):DA(I95) DC(J199):DG(I94) DA(J200):DT(I93) DA(J201):DT(I92) DA(J202):DT(I91) DA(J203):DT(I90) DG(J204):DC(I89) DG(J205):DC(I88) DC(J206):DG(I87) DA(J207):DT(I86) DT(J208):DA(I85) DG(J209):DC(I84) DT(J210):DA(I83) DT(J211):DA(I82) DC(J212):DG(I81) DA(J213):DT(I80) DG(J214):DC(I79) DC(J215):DG(I78) DG(J216):DC(I77) DG(J217):DC(I76) DA(J218):DT(I75) DA(J219):DT(I74) DT(J220):DA(I73) DT(J221):DA(I72) DC(J222):DG(I71) DC(J223):DG(I70) DG(J224):DC(I69) DC(J225):DG(I68) DT(J226):DA(I67) DG(J227):DC(I66) DA(J228):DT(I65) DA(J229):DT(I64) DC(J230):DG(I63) DA(J231):DT(I62) DT(J232):DA(I61) DG(J233):DC(I60) DC(J234):DG(I59) DC(J235):DG(I58) DT(J236):DA(I57) DT(J237):DA(I56) DT(J238):DA(I55) DT(J239):DA(I54) DG(J240):DC(I53) DA(J241):DT(I52) DT(J242):DA(I51) DG(J243):DC(I50) DG(J244):DC(I49) DA(J245):DT(I48) DG(J246):DC(I47) DC(J247):DG(I46) DA(J248):DT(I45) DG(J249):DC(I44) DT(J250):DA(I43) DT(J251):DA(I42) DT(J252):DA(I41) DC(J253):DG(I40) DC(J254):DG(I39) DA(J255):DT(I38) DA(J256):DT(I37) DA(J257):DT(I36) DT(J258):DA(I35) DA(J259):DT(I34) DC(J260):DG(I33) DA(J261):DT(I32) DC(J262):DG(I31) DT(J263):DA(I30) DT(J264):DA(I29) DT(J265):DA(I28) DT(J266):DA(I27) DG(J267):DC(I26) DG(J268):DC(I25) DT(J269):DA(I24) DA(J270):DT(I23) DG(J271):DC(I22) DA(J272):DT(I21) DA(J273):DT(I20) DT(J274):DA(I19) DC(J275):DG(I18) DT(J276):DA(I17) DG(J277):DC(I16) DC(J278):DG(I15) DA(J279):DT(I14) DG(J280):DC(I13) DG(J281):DC(I12) DT(J282):DA(I11) DG(J283):DC(I10) DG(J284):DC(I9) DA(J285):DT(I8) DT(J286):DA(I7) DA(J287):DT(I6) DT(J288):DA(I5) DT(J289):DA(I4) DG(J290):DC(I3) DA(J291):DT(I2) DT(J292):DA(I1) chainA ( 5) ARG440 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 6) TYR441 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 30) LEU465 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 48) ARG483 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 22) ARG45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainC chainD chainE ( 3) ARG640 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 4) TYR641 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 28) LEU665 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) ARG683 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainF ( 16) PRO232 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) ARG245 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainG ( 28) ARG1042 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainH prot.sequence kkphRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera/dniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/aktrssraglqfpvgrvhrllRkgnyaervgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt/trkesyaiyvykvlkqvhpdtGisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak/phRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera/rhrkvlrdniqgitkPairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/ktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk/trkesyaiyvykvlkqvhpdtgisskaMsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak >1m19_G:Histone-fold; title=LIGAND BINDING ALTERS THE STRUCTURE AND DYNAMICS OF NUCLEOSOMAL DNA organism=? DNA sequence DA(J147):DT(I146) DT(J148):DA(I145) DC(J149):DG(I144) DA(J150):DT(I143) DA(J151):DT(I142) DT(J152):DA(I141) DA(J153):DT(I140) DT(J154):DA(I139) DC(J155):DG(I138) DC(J156):DG(I137) DA(J157):DT(I136) DC(J158):DG(I135) DC(J159):DG(I134) DT(J160):DA(I133) DG(J161):DC(I132) DC(J162):DG(I131) DA(J163):DT(I130) DG(J164):DC(I129) DA(J165):DT(I128) DT(J166):DA(I127) DT(J167):DA(I126) DC(J168):DG(I125) DT(J169):DA(I124) DA(J170):DT(I123) DC(J171):DG(I122) DC(J172):DG(I121) DA(J174):DT(I119) DA(J175):DT(I118) DA(J176):DT(I117) DG(J177):DC(I116) DT(J178):DA(I115) DG(J179):DC(I114) DT(J180):DA(I113) DA(J181):DT(I112) DT(J182):DA(I111) DT(J183):DA(I110) DT(J184):DA(I109) DG(J185):DC(I108) DG(J186):DC(I107) DA(J187):DT(I106) DA(J188):DT(I105) DA(J189):DT(I104) DC(J190):DG(I103) DT(J191):DA(I102) DG(J192):DC(I101) DC(J193):DG(I100) DT(J194):DA(I99) DC(J195):DG(I98) DC(J196):DG(I97) DA(J197):DT(I96) DT(J198):DA(I95) DC(J199):DG(I94) DA(J200):DT(I93) DA(J201):DT(I92) DA(J202):DT(I91) DA(J203):DT(I90) DG(J204):DC(I89) DG(J205):DC(I88) DC(J206):DG(I87) DA(J207):DT(I86) DT(J208):DA(I85) DG(J209):DC(I84) DT(J210):DA(I83) DT(J211):DA(I82) DC(J212):DG(I81) DA(J213):DT(I80) DG(J214):DC(I79) DC(J215):DG(I78) DG(J216):DC(I77) DG(J217):DC(I76) DA(J218):DT(I75) DA(J219):DT(I74) DT(J220):DA(I73) DT(J221):DA(I72) DC(J222):DG(I71) DC(J223):DG(I70) DG(J224):DC(I69) DC(J225):DG(I68) DT(J226):DA(I67) DG(J227):DC(I66) DA(J228):DT(I65) DA(J229):DT(I64) DC(J230):DG(I63) DA(J231):DT(I62) DT(J232):DA(I61) DG(J233):DC(I60) DC(J234):DG(I59) DC(J235):DG(I58) DT(J236):DA(I57) DT(J237):DA(I56) DT(J238):DA(I55) DT(J239):DA(I54) DG(J240):DC(I53) DA(J241):DT(I52) DT(J242):DA(I51) DG(J243):DC(I50) DG(J244):DC(I49) DA(J245):DT(I48) DG(J246):DC(I47) DC(J247):DG(I46) DA(J248):DT(I45) DG(J249):DC(I44) DT(J250):DA(I43) DT(J251):DA(I42) DT(J252):DA(I41) DC(J253):DG(I40) DC(J254):DG(I39) DA(J255):DT(I38) DA(J256):DT(I37) DA(J257):DT(I36) DT(J258):DA(I35) DA(J259):DT(I34) DC(J260):DG(I33) DA(J261):DT(I32) DC(J262):DG(I31) DT(J263):DA(I30) DT(J264):DA(I29) DT(J265):DA(I28) DT(J266):DA(I27) DG(J267):DC(I26) DG(J268):DC(I25) DT(J269):DA(I24) DA(J270):DT(I23) DG(J271):DC(I22) DA(J272):DT(I21) DA(J273):DT(I20) DT(J274):DA(I19) DC(J275):DG(I18) DT(J276):DA(I17) DG(J277):DC(I16) DC(J278):DG(I15) DA(J279):DT(I14) DG(J280):DC(I13) DG(J281):DC(I12) DT(J282):DA(I11) DG(J283):DC(I10) DG(J284):DC(I9) DA(J285):DT(I8) DT(J286):DA(I7) DA(J287):DT(I6) DT(J288):DA(I5) DT(J289):DA(I4) DG(J290):DC(I3) DA(J291):DT(I2) DT(J292):DA(I1) chainG ( 28) ARG1042 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence ktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk >1m1a_ABCDEFGH:Histone-fold;lambda_repressor-like_DNA-binding_domains;p53-like_transcription_factors;Nucleic_acid-binding_proteins;P-loop_containing_nucleoside_triphosphate_hydrolases; title=LIGAND BINDING ALTERS THE STRUCTURE AND DYNAMICS OF NUCLEOSOMAL DNA organism=XENOPUS LAEVIS DNA sequence DA(J147):DT(I146) DT(J148):DA(I145) DC(J149):DG(I144) DA(J150):DT(I143) DA(J151):DT(I142) DT(J152):DA(I141) DA(J153):DT(I140) DT(J154):DA(I139) DC(J155):DG(I138) DC(J156):DG(I137) DA(J157):DT(I136) DC(J158):DG(I135) DC(J159):DG(I134) DT(J160):DA(I133) DG(J161):DC(I132) DC(J162):DG(I131) DA(J163):DT(I130) DG(J164):DC(I129) DA(J165):DT(I128) DT(J166):DA(I127) DT(J167):DA(I126) DC(J168):DG(I125) DT(J169):DA(I124) DA(J170):DT(I123) DC(J171):DG(I121) DA(J173):DT(I120) DA(J174):DT(I119) DA(J175):DT(I118) DA(J176):DT(I117) DG(J177):DC(I116) DT(J178):DA(I115) DG(J179):DC(I114) DT(J180):DA(I113) DA(J181):DT(I112) DT(J182):DA(I111) DT(J183):DA(I110) DT(J184):DA(I109) DG(J185):DC(I108) DG(J186):DC(I107) DA(J187):DT(I106) DA(J188):DT(I105) DA(J189):DT(I104) DC(J190):DG(I103) DT(J191):DA(I102) DG(J192):DC(I101) DC(J193):DG(I100) DT(J194):DA(I99) DC(J195):DG(I98) DC(J196):DG(I97) DA(J197):DT(I96) DT(J198):DA(I95) DC(J199):DG(I94) DA(J200):DT(I93) DA(J201):DT(I92) DA(J202):DT(I91) DA(J203):DT(I90) DG(J204):DC(I89) DG(J205):DC(I88) DC(J206):DG(I87) DA(J207):DT(I86) DT(J208):DA(I85) DG(J209):DC(I84) DT(J210):DA(I83) DT(J211):DA(I82) DC(J212):DG(I81) DA(J213):DT(I80) DG(J214):DC(I79) DC(J215):DG(I78) DG(J216):DC(I77) DG(J217):DC(I76) DA(J218):DT(I75) DA(J219):DT(I74) DT(J220):DA(I73) DT(J221):DA(I72) DC(J222):DG(I71) DC(J223):DG(I70) DG(J224):DC(I69) DC(J225):DG(I68) DT(J226):DA(I67) DG(J227):DC(I66) DA(J228):DT(I65) DA(J229):DT(I64) DC(J230):DG(I63) DA(J231):DT(I62) DT(J232):DA(I61) DG(J233):DC(I60) DC(J234):DG(I59) DC(J235):DG(I58) DT(J236):DA(I57) DT(J237):DA(I56) DT(J238):DA(I55) DT(J239):DA(I54) DG(J240):DC(I53) DA(J241):DT(I52) DT(J242):DA(I51) DG(J243):DC(I50) DG(J244):DC(I49) DA(J245):DT(I48) DG(J246):DC(I47) DC(J247):DG(I46) DA(J248):DT(I45) DG(J249):DC(I44) DT(J250):DA(I43) DT(J251):DA(I42) DT(J252):DA(I41) DC(J253):DG(I40) DC(J254):DG(I39) DA(J255):DT(I38) DA(J256):DT(I37) DA(J257):DT(I36) DT(J258):DA(I35) DA(J259):DT(I34) DC(J260):DG(I33) DA(J261):DT(I32) DC(J262):DG(I31) DT(J263):DA(I30) DT(J264):DA(I29) DT(J265):DA(I28) DT(J266):DA(I27) DG(J267):DC(I26) DG(J268):DC(I25) DT(J269):DA(I24) DA(J270):DT(I23) DG(J271):DC(I22) DA(J272):DT(I21) DA(J273):DT(I20) DT(J274):DA(I19) DC(J275):DG(I18) DT(J276):DA(I17) DG(J277):DC(I16) DC(J278):DG(I15) DA(J279):DT(I14) DG(J280):DC(I13) DG(J281):DC(I12) DT(J282):DA(I11) DG(J283):DC(I10) DG(J284):DC(I9) DA(J285):DT(I8) DT(J286):DA(I7) DA(J287):DT(I6) DT(J288):DA(I5) DT(J289):DA(I4) DG(J290):DC(I3) DA(J291):DT(I2) DT(J292):DA(I1) chainA ( 4) ARG440 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 5) TYR441 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) LEU465 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 47) ARG483 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 10) PRO32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 23) ARG45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainC chainD chainE ( 3) ARG640 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) LEU665 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) ARG683 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainF ( 36) ARG245 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainG ( 29) ARG1042 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainH ( 8) ILE1436 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence kphRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera/rdniqgitkPairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/aktrssragLqfpvgrvhrllrKgnyaervgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpk/trkesyaiyVykvlkqvhpdtgIsskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsa/phRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera/lgkggakrhrkvlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/aktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk/trkesyaIyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsa >1m1a_E:Histone-fold; title=LIGAND BINDING ALTERS THE STRUCTURE AND DYNAMICS OF NUCLEOSOMAL DNA organism=XENOPUS LAEVIS DNA sequence DA(I1):DT(J292) DT(I2):DA(J291) DC(I3):DG(J290) DA(I4):DT(J289) DA(I5):DT(J288) DT(I6):DA(J287) DA(I7):DT(J286) DT(I8):DA(J285) DC(I9):DG(J284) DC(I10):DG(J283) DA(I11):DT(J282) DC(I12):DG(J281) DC(I13):DG(J280) DT(I14):DA(J279) DG(I15):DC(J278) DC(I16):DG(J277) DA(I17):DT(J276) DG(I18):DC(J275) DA(I19):DT(J274) DT(I20):DA(J273) DT(I21):DA(J272) DC(I22):DG(J271) DT(I23):DA(J270) DA(I24):DT(J269) DC(I25):DG(J268) DC(I26):DG(J267) DA(I27):DT(J266) DA(I28):DT(J265) DA(I29):DT(J264) DA(I30):DT(J263) DG(I31):DC(J262) DT(I32):DA(J261) DG(I33):DC(J260) DT(I34):DA(J259) DA(I35):DT(J258) DT(I36):DA(J257) DT(I37):DA(J256) DT(I38):DA(J255) DG(I39):DC(J254) DG(I40):DC(J253) DA(I41):DT(J252) DA(I42):DT(J251) DA(I43):DT(J250) DC(I44):DG(J249) DT(I45):DA(J248) DG(I46):DC(J247) DC(I47):DG(J246) DT(I48):DA(J245) DC(I49):DG(J244) DC(I50):DG(J243) DA(I51):DT(J242) DT(I52):DA(J241) DC(I53):DG(J240) DA(I54):DT(J239) DA(I55):DT(J238) DA(I56):DT(J237) DA(I57):DT(J236) DG(I58):DC(J235) DG(I59):DC(J234) DC(I60):DG(J233) DA(I61):DT(J232) DT(I62):DA(J231) DG(I63):DC(J230) DT(I64):DA(J229) DT(I65):DA(J228) DC(I66):DG(J227) DA(I67):DT(J226) DG(I68):DC(J225) DC(I69):DG(J224) DG(I70):DC(J223) DG(I71):DC(J222) DA(I72):DT(J221) DA(I73):DT(J220) DT(I74):DA(J219) DT(I75):DA(J218) DC(I76):DG(J217) DC(I77):DG(J216) DG(I78):DC(J215) DC(I79):DG(J214) DT(I80):DA(J213) DG(I81):DC(J212) DA(I82):DT(J211) DA(I83):DT(J210) DC(I84):DG(J209) DA(I85):DT(J208) DT(I86):DA(J207) DG(I87):DC(J206) DC(I88):DG(J205) DC(I89):DG(J204) DT(I90):DA(J203) DT(I91):DA(J202) DT(I92):DA(J201) DT(I93):DA(J200) DG(I94):DC(J199) DA(I95):DT(J198) DT(I96):DA(J197) DG(I97):DC(J196) DG(I98):DC(J195) DA(I99):DT(J194) DG(I100):DC(J193) DC(I101):DG(J192) DA(I102):DT(J191) DG(I103):DC(J190) DT(I104):DA(J189) DT(I105):DA(J188) DT(I106):DA(J187) DC(I107):DG(J186) DC(I108):DG(J185) DA(I109):DT(J184) DA(I110):DT(J183) DA(I111):DT(J182) DT(I112):DA(J181) DA(I113):DT(J180) DC(I114):DG(J179) DA(I115):DT(J178) DC(I116):DG(J177) DT(I117):DA(J176) DT(I118):DA(J175) DT(I119):DA(J174) DT(I120):DA(J173) DG(I121):DC(J171) DT(I123):DA(J170) DA(I124):DT(J169) DG(I125):DC(J168) DA(I126):DT(J167) DA(I127):DT(J166) DT(I128):DA(J165) DC(I129):DG(J164) DT(I130):DA(J163) DG(I131):DC(J162) DC(I132):DG(J161) DA(I133):DT(J160) DG(I134):DC(J159) DG(I135):DC(J158) DT(I136):DA(J157) DG(I137):DC(J156) DG(I138):DC(J155) DA(I139):DT(J154) DT(I140):DA(J153) DA(I141):DT(J152) DT(I142):DA(J151) DT(I143):DA(J150) DG(I144):DC(J149) DA(I145):DT(J148) DT(I146):DA(J147) chainE ( 3) ARG640 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) LEU665 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) ARG683 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence phRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera >1m3q_A:DNA-glycosylase;TATA-box_binding_protein-like; title=CRYSTAL STRUCTURE OF HOGG1 D268E MUTANT WITH BASE-EXCISED DNA AND 8- AMINOGUANINE organism=Homo sapiens DNA sequence DG(B1):DC(C30) DG(B2):DC(C29) DT(B3):DA(C28) DA(B4):DT(C27) DG(B5):DC(C26) DA(B6):DT(C25) DC(B7):DG(C24) DC(B8):DA(C22) DT(B9):DC(C21) DG(B10):DC(C20) DG(B11):DT(C19) DA(B12):DG(C18) DC(B13):DC(C17) DG(B14):DG(C16) chainA (138) ASN149 0 0 0 0 0 0 30 14 0 0 0 0 0 0 (139) ASN150 0 0 0 0 0 0 0 2 1 0 0 0 0 0 (140) ASN151 0 0 0 0 0 0 0 4 0 0 0 0 0 0 (143) ARG154 0 0 0 0 0 0 0 5 7 0 0 0 0 0 (192) TYR203 0 0 0 0 0 0 8 19 0 0 0 0 0 0 (193) ARG204 0 0 0 0 0 0 0 11 0 0 0 0 0 0 (196) TYR207 0 0 0 0 0 1 0 0 0 0 0 0 0 0 (282) PRO293 0 0 1 0 0 0 0 0 0 0 0 0 0 0 prot.sequence gseghrtlastpalwasipcprselrldlvlpsgqsfrwreqspahwsgvladqvwtltqteeqlhctvyrsqasrptpdeleavrkyfqldvtlaqlyhhwgsvdshfqevaqkfqgvrllrqdpieclfsficssNNNiaRitgmverlcqafgprliqlddvtyhgfpslqalagpeveahlrklglgYRarYvsasaraileeqgglawlqqlressyeeahkalcilpgvgtkvadciclmaldkpqavpvevhmwhiaqrdyswhpttsqakgpsPqtnkelgnffrslwgpyagwaqavlfsadlrq >1m5x_A:Homing_endonucleases; title=CRYSTAL STRUCTURE OF THE HOMING ENDONUCLEASE I-MSOI BOUND TO ITS DNA SUBSTRATE organism=Monomastix sp. DNA sequence DC(D551):DG(C524) DG(D552):DC(C523) DG(D553):DC(C522) DA(D554):DT(C521) DA(D555):DT(C520) DC(D556):DG(C519) DT(D557):DA(C518) DG(D558):DC(C517) DT(D559):DA(C516) DC(D560):DG(C515) DT(D561):DA(C514) DC(D562):DG(C513) DA(D563):DT(C512) DC(D564):DG(C511) DG(D565):DC(C510) DA(D566):DT(C509) DC(D567):DG(C508) DG(D568):DC(C507) DT(D569):DA(C506) DT(D570):DA(C505) DC(D571):DG(C504) DT(D572):DA(C503) DG(D573):DC(C502) DC(D574):DG(C501) chainA ( 19) SER24 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 21) TYR26 0 0 0 0 0 0 0 11 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 23) LYS28 0 0 0 0 0 4 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 27) ARG32 0 0 13 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) ASP34 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 30) TYR35 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 36) GLN41 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 44) ILE49 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 67) ARG72 0 0 0 0 0 0 16 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 70) ARG75 0 0 0 0 0 0 0 0 20 15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 72) ASP77 0 0 0 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 74) ILE79 0 0 0 0 0 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 0 ( 76) ASP81 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 80) ILE85 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence tlqpteaayiagfldgdgSiYaKlipRpDYkdikyQvslaiSfIqrkdkfpylqdiydqlgkrgnlRkdRgDgIaDyTiIgsthlsiilpdlvpylrikkkqanrilhiinlypqaqknpskfldlvkivddvqnlnkradelkstnydrlleeflkagki >1m5x_AB:Homing_endonucleases; title=CRYSTAL STRUCTURE OF THE HOMING ENDONUCLEASE I-MSOI BOUND TO ITS DNA SUBSTRATE organism=Monomastix sp. DNA sequence DG(C501):DC(D574) DC(C502):DG(D573) DA(C503):DT(D572) DG(C504):DC(D571) DA(C505):DT(D570) DA(C506):DT(D569) DC(C507):DG(D568) DG(C508):DC(D567) DT(C509):DA(D566) DC(C510):DG(D565) DG(C511):DC(D564) DT(C512):DA(D563) DG(C513):DC(D562) DA(C514):DT(D561) DG(C515):DC(D560) DA(C516):DT(D559) DC(C517):DG(D558) DA(C518):DT(D557) DG(C519):DC(D556) DT(C520):DA(D555) DT(C521):DA(D554) DC(C522):DG(D553) DC(C523):DG(D552) DG(C524):DC(D551) chainA ( 19) SER24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 ( 21) TYR26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 11 0 0 0 0 0 0 0 ( 23) LYS28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 4 0 0 0 0 0 ( 27) ARG32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 13 0 0 ( 29) ASP34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 ( 30) TYR35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 ( 36) GLN41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 ( 44) ILE49 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 ( 67) ARG72 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 16 0 0 0 0 0 0 ( 70) ARG75 0 0 0 0 0 0 0 0 0 0 0 0 0 3 15 20 0 0 0 0 0 0 0 0 ( 72) ASP77 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4 0 0 0 0 0 0 0 0 ( 74) ILE79 0 0 0 0 0 0 0 0 0 0 0 0 1 4 0 0 0 0 0 0 0 0 0 0 ( 76) ASP81 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 ( 80) ILE85 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 chainB ( 19) SER224 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 21) TYR226 0 0 0 0 0 0 0 10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 23) LYS228 0 0 0 0 0 9 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) ILE230 0 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 27) ARG232 0 0 21 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) ASP234 7 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 30) TYR235 0 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 44) ILE249 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 67) ARG272 0 0 0 0 0 0 12 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 70) ARG275 0 0 0 0 0 0 0 0 23 14 4 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 72) ASP277 0 0 0 0 0 0 0 0 5 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 74) ILE279 0 0 0 0 0 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 0 ( 80) ILE285 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence tlqpteaayiagfldgdgSiYaKlipRpDYkdikyQvslaiSfIqrkdkfpylqdiydqlgkrgnlRkdRgDgIaDyTiIgsthlsiilpdlvpylrikkkqanrilhiinlypqaqknpskfldlvkivddvqnlnkradelkstnydrlleeflkagki/tlqpteaayiagfldgdgSiYaKlIpRpDYkdikyqvslaiSfIqrkdkfpylqdiydqlgkrgnlRkdRgDgIaDyTiIgsthlsiilpdlvpylrikkkqanrilhiinlypqaqknpskfldlvkivddvqnlnkradelkstnydrlleeflkagki >1ma7_A:DNA_breaking-rejoining_enzymes;lambda_integrase-like,_N-terminal_domain; title=CRYSTAL STRUCTURE OF CRE SITE-SPECIFIC RECOMBINASE COMPLEXED WITH A MUTANT DNA SUBSTRATE, LOXP-A8/T27 organism=Enterobacteria phage P1 DNA sequence DA(C1):DT(D34) DT(C2):DA(D33) DA(C3):DT(D32) DA(C4):DT(D31) DC(C5):DG(D30) DT(C6):DA(D29) DT(C7):DA(D28) DA(C8):DT(D27) DG(C9):DC(D26) DT(C10):DA(D25) DA(C11):DT(D24) DT(C12):DA(D23) DA(C13):DT(D22) DA(C14):DT(D21) DT(C15):DA(D20) DG(C16):DC(D19) DT(C19):DA(D16) DG(C20):DC(D15) DC(C21):DG(D14) DT(C22):DA(D13) DA(C23):DT(D12) DT(C24):DA(D11) DA(C25):DT(D10) DC(C26):DG(D9) DT(C27):DA(D8) DA(C28):DT(D7) DA(C29):DT(D6) DG(C30):DC(D5) DT(C31):DA(D4) DT(C32):DA(D3) DA(C33):DT(D2) DT(C34):DA(D1) chainA ( 22) HIS40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 5 0 0 0 0 0 0 0 0 0 0 ( 23) THR41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) LYS43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 ( 26) MET44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 9 5 0 0 0 0 0 0 0 0 0 ( 29) SER47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 ( 68) LYS86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 12 0 0 0 0 0 0 0 0 0 0 0 0 ( 69) THR87 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 ( 72) GLN90 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 9 0 0 0 0 0 0 0 0 0 0 0 ( 76) GLN94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 (223) ARG241 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 (226) LYS244 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 8 8 (239) SER257 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 0 0 (241) ARG259 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 5 9 3 0 0 0 0 0 (244) GLU262 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 (264) ARG282 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 prot.sequence tsdevrknlmdmfrdrqafseHTwKMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmlihigrtktlvstagvekalslgvtklverwisvsgvaddpnnylfcRvRKngvaapsatsqlStRalEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtnvnivmnyirnldsetgamvrlled >1ma7_AB:DNA_breaking-rejoining_enzymes;lambda_integrase-like,_N-terminal_domain; title=CRYSTAL STRUCTURE OF CRE SITE-SPECIFIC RECOMBINASE COMPLEXED WITH A MUTANT DNA SUBSTRATE, LOXP-A8/T27 organism=Enterobacteria phage P1 DNA sequence DA(D1):DT(C34) DT(D2):DA(C33) DA(D3):DT(C32) DA(D4):DT(C31) DC(D5):DG(C30) DT(D6):DA(C29) DT(D7):DA(C28) DA(D8):DT(C27) DG(D9):DC(C26) DT(D10):DA(C25) DA(D11):DT(C24) DT(D12):DA(C23) DA(D13):DT(C22) DG(D14):DC(C21) DC(D15):DG(C20) DA(D18):DT(C19) DC(D19):DG(C16) DA(D20):DT(C15) DT(D21):DA(C14) DT(D22):DA(C13) DA(D23):DT(C12) DT(D24):DA(C11) DA(D25):DT(C10) DC(D26):DG(C9) DT(D27):DA(C8) DA(D28):DT(C7) DA(D29):DT(C6) DG(D30):DC(C5) DT(D31):DA(C4) DT(D32):DA(C3) DA(D33):DT(C2) DT(D34):DA(C1) chainA ( 22) HIS40 0 0 0 0 0 0 0 0 0 0 5 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 23) THR41 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) LYS43 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 26) MET44 0 0 0 0 0 0 0 0 0 5 9 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) SER47 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 68) LYS86 0 0 0 0 0 0 0 0 0 0 0 0 12 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 69) THR87 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 72) GLN90 0 0 0 0 0 0 0 0 0 0 0 9 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 76) GLN94 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (223) ARG241 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (226) LYS244 8 8 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (239) SER257 0 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (241) ARG259 0 0 0 0 0 3 9 5 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (244) GLU262 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (264) ARG282 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 21) HIS40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 5 0 0 0 0 0 0 0 0 0 0 ( 22) THR41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 ( 24) LYS43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 8 0 0 0 0 0 0 0 0 0 ( 25) MET44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 8 4 0 0 0 0 0 0 0 0 0 ( 28) SER47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 ( 67) LYS86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 9 0 0 0 0 0 0 0 0 0 0 0 0 ( 68) THR87 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 ( 71) GLN90 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 7 11 0 0 0 0 0 0 0 0 0 0 0 ( 75) GLN94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 (102) ARG121 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (182) LYS201 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5 4 0 0 0 0 0 0 0 0 0 0 0 0 (222) ARG241 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 (224) ARG243 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 4 0 (225) LYS244 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 10 6 (238) SER257 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 0 0 (240) ARG259 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 14 9 1 0 0 0 0 0 (243) GLU262 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 1 0 0 0 0 0 0 0 0 (263) ARG282 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 7 0 0 0 0 0 0 0 0 0 prot.sequence tsdevrknlmdmfrdrqafseHTwKMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmlihigrtktlvstagvekalslgvtklverwisvsgvaddpnnylfcRvRKngvaapsatsqlStRalEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtnvnivmnyirnldsetgamvrlled/sdevrknlmdmfrdrqafseHTwKMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrriRkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmlihigrtKtlvstagvekalslgvtklverwisvsgvaddpnnylfcRvRKngvaapsatsqlStRalEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtnvnivmnyirngamvrlled >1mdm_AB:Homeodomain-like; title=INHIBITED FRAGMENT OF ETS-1 AND PAIRED DOMAIN OF PAX5 BOUND TO DNA organism=HOMO SAPIENS / MUS MUSCULUS DNA sequence DA(D2):DT(C26) DG(D3):DC(C25) DG(D4):DC(C24) DC(D5):DG(C23) DC(D6):DG(C22) DA(D7):DT(C21) DC(D8):DG(C20) DT(D9):DA(C19) DG(D10):DC(C18) DG(D11):DC(C17) DA(D12):DT(C16) DG(D13):DC(C15) DC(D14):DG(C14) DC(D15):DG(C13) DC(D16):DG(C12) DA(D17):DT(C11) DT(D18):DA(C10) DC(D19):DG(C9) DT(D20):DA(C8) DC(D21):DG(C7) DC(D22):DG(C6) DG(D23):DC(C5) DG(D24):DC(C4) DC(D25):DG(C3) DA(D26):DT(C2) chainA ( 11) ASN29 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 ( 43) SER61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 ( 44) HIS62 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 10 17 0 0 0 0 0 0 ( 48) SER66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 ( 49) LYS67 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 ( 65) ILE83 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 68) SER86 0 0 0 0 0 0 0 6 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (113) SER131 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (115) SER133 0 0 3 9 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (116) SER134 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (118) ASN136 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (119) ARG137 0 0 0 0 1 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 79) GLU387 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 ( 80) LYS388 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 ( 83) ARG391 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 19 26 0 0 0 0 ( 86) ARG394 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 15 0 0 0 ( 87) TYR395 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 prot.sequence gvnqlggvfvNgrplpdvvrqrivelahqgvrpcdisrqlrvSHgcvSKilgryyetgsikpgvIggSkpkvatpkvvekiaeykrqnptmfaweirdrllaervcdndtvpSvSSiNRiirtk/rdradlnkdkpvipaaalagytgsgpiqlwqfllelltdkscqsfiswtgdgwefklsdpdevarrwgkrknkpkmnyEKlsRglRYyydkniihktagkryvyrfvcdlqsllgytpeelhamldvkp >1mdm_B:"Winged_helix"_DNA-binding_domain; title=INHIBITED FRAGMENT OF ETS-1 AND PAIRED DOMAIN OF PAX5 BOUND TO DNA organism=MUS MUSCULUS DNA sequence DT(C2):DA(D26) DG(C3):DC(D25) DC(C4):DG(D24) DC(C5):DG(D23) DG(C6):DC(D22) DG(C7):DC(D21) DA(C8):DT(D20) DG(C9):DC(D19) DA(C10):DT(D18) DT(C11):DA(D17) DG(C12):DC(D16) DG(C13):DC(D15) DG(C14):DC(D14) DC(C15):DG(D13) DT(C16):DA(D12) DC(C17):DG(D11) DC(C18):DG(D10) DA(C19):DT(D9) DG(C20):DC(D8) DT(C21):DA(D7) DG(C22):DC(D6) DG(C23):DC(D5) DC(C24):DG(D4) DC(C25):DG(D3) DT(C26):DA(D2) chainB ( 79) GLU387 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 80) LYS388 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 83) ARG391 0 0 0 0 26 19 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 86) ARG394 0 0 0 15 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 87) TYR395 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence rdradlnkdkpvipaaalagytgsgpiqlwqfllelltdkscqsfiswtgdgwefklsdpdevarrwgkrknkpkmnyEKlsRglRYyydkniihktagkryvyrfvcdlqsllgytpeelhamldvkp >1mdy_AB: title=CRYSTAL STRUCTURE OF MYOD BHLH DOMAIN BOUND TO DNA: PERSPECTIVES ON DNA RECOGNITION AND IMPLICATIONS FOR TRANSCRIPTIONAL ACTIVATION organism=MUS MUSCULUS DNA sequence DT(F15):DA(E14) DC(F16):DG(E13) DA(F17):DT(E12) DA(F18):DT(E11) DC(F19):DG(E10) DA(F20):DT(E9) DG(F21):DC(E8) DC(F22):DG(E7) DT(F23):DA(E6) DG(F24):DC(E5) DT(F25):DA(E4) DT(F26):DA(E3) DG(F27):DC(E2) DA(F28):DT(E1) chainA ( 13) ARG111 0 0 0 0 0 0 0 0 4 6 0 0 0 0 ( 17) THR115 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 19) ARG117 0 0 0 0 0 0 0 0 0 0 0 1 0 0 ( 20) GLU118 0 0 0 0 0 0 0 0 8 10 0 0 0 0 ( 23) ARG121 0 0 0 0 0 0 0 0 0 5 2 0 0 0 chainB ( 7) ARG111 0 0 0 0 5 2 0 0 0 0 0 0 0 0 ( 11) THR115 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 13) ARG117 0 0 2 0 0 0 0 0 0 0 0 0 0 0 ( 14) GLU118 0 0 0 0 10 8 1 0 0 0 0 0 0 0 ( 17) ARG121 0 0 0 1 6 0 0 0 0 0 0 0 0 0 prot.sequence melkrkttnadrRkaaTmRErrRlskvneafetlkrstssnpnqrlpkveilrnairyieglqallrd/ttnadrRkaaTmRErrRlskvneafetlkrstssnpnqrlpkveilrnairyieglqallrd >1mdy_C:HLH,_helix-loop-helix_DNA-binding_domain; title=CRYSTAL STRUCTURE OF MYOD BHLH DOMAIN BOUND TO DNA: PERSPECTIVES ON DNA RECOGNITION AND IMPLICATIONS FOR TRANSCRIPTIONAL ACTIVATION organism=MUS MUSCULUS DNA sequence DT(G29):DA(H56) DC(G30):DG(H55) DA(G31):DT(H54) DA(G32):DT(H53) DC(G33):DG(H52) DA(G34):DT(H51) DG(G35):DC(H50) DC(G36):DG(H49) DT(G37):DA(H48) DG(G38):DC(H47) DT(G39):DA(H46) DT(G40):DA(H45) DG(G41):DC(H44) DA(G42):DT(H43) chainC ( 7) ARG111 0 0 0 0 7 3 0 0 0 0 0 0 0 0 ( 11) THR115 0 0 0 0 0 4 0 0 0 0 0 0 0 0 ( 13) ARG117 0 0 2 0 0 0 0 0 0 0 0 0 0 0 ( 14) GLU118 0 0 0 1 10 8 0 0 0 0 0 0 0 0 ( 17) ARG121 0 0 0 2 7 0 0 0 0 0 0 0 0 0 prot.sequence ttnadrRkaaTmRErrRlskvneafetlkrstssnpnqrlpkveilrnairyieglqallrd >1mdy_CD: title=CRYSTAL STRUCTURE OF MYOD BHLH DOMAIN BOUND TO DNA: PERSPECTIVES ON DNA RECOGNITION AND IMPLICATIONS FOR TRANSCRIPTIONAL ACTIVATION organism=MUS MUSCULUS DNA sequence DT(H43):DA(G42) DC(H44):DG(G41) DA(H45):DT(G40) DA(H46):DT(G39) DC(H47):DG(G38) DA(H48):DT(G37) DG(H49):DC(G36) DC(H50):DG(G35) DT(H51):DA(G34) DG(H52):DC(G33) DT(H53):DA(G32) DT(H54):DA(G31) DG(H55):DC(G30) DA(H56):DT(G29) chainC ( 7) ARG111 0 0 0 0 0 0 0 0 3 7 0 0 0 0 ( 11) THR115 0 0 0 0 0 0 0 0 4 0 0 0 0 0 ( 13) ARG117 0 0 0 0 0 0 0 0 0 0 0 2 0 0 ( 14) GLU118 0 0 0 0 0 0 0 0 8 10 1 0 0 0 ( 17) ARG121 0 0 0 0 0 0 0 0 0 7 2 0 0 0 chainD ( 7) ARG111 0 0 0 0 6 8 0 0 0 0 0 0 0 0 ( 13) ARG117 0 0 1 0 0 0 0 0 0 0 0 0 0 0 ( 14) GLU118 0 0 0 2 10 6 0 0 0 0 0 0 0 0 ( 17) ARG121 0 0 0 2 7 0 0 0 0 0 0 0 0 0 prot.sequence ttnadrRkaaTmRErrRlskvneafetlkrstssnpnqrlpkveilrnairyieglqallrd/ttnadrRkaatmRErrRlskvneafetlkrstssnpnqrlpkveilrnairyieglqallrd >1mhd_AB: title=CRYSTAL STRUCTURE OF A SMAD MH1 DOMAIN BOUND TO DNA organism=HOMO SAPIENS DNA sequence DC(C1001):DG(D2013) DA(C1002):DT(D2012) DG(C1003):DC(D2011) DT(C1004):DA(D2010) DC(C1005):DG(D2009) DT(C1006):DA(D2008) DA(C1007):DT(D2007) DG(C1008):DC(D2006) DA(C1009):DT(D2005) DC(C1010):DG(D2004) DA(C1011):DT(D2003) DT(C1012):DA(D2002) DA(C1013):DT(D2001) chainA ( 65) ARG74 0 0 0 0 0 0 0 0 2 13 16 0 0 ( 67) GLN76 0 0 0 0 0 5 9 2 0 0 0 0 0 ( 72) LYS81 0 0 0 0 0 0 4 7 3 0 0 0 0 chainB ( 65) ARG74 0 9 11 1 0 0 0 0 0 0 0 0 0 ( 67) GLN76 0 0 0 0 2 8 5 0 0 0 0 0 0 ( 72) LYS81 0 0 0 4 6 4 0 0 0 0 0 0 0 prot.sequence pivkrllgwkkgeqngqeekwcekavkslvkklkktgqldelekaittqnvntkcitiprsldgRlQvshrKglphviycrlwrwpdlhshhelramelcefafnmkkdevcvnpyhyqrvet/pivkrllgwkkgeqngqeekwcekavkslvkklkktgqldelekaittqnvntkcitiprsldgRlQvshrKglphviycrlwrwpdlhshhelramelcefafnmkkdevcvnpyhyqrvet >1mhd_B:SMAD_MH1_domain; title=CRYSTAL STRUCTURE OF A SMAD MH1 DOMAIN BOUND TO DNA organism=HOMO SAPIENS DNA sequence DT(D2001):DA(C1013) DA(D2002):DT(C1012) DT(D2003):DA(C1011) DG(D2004):DC(C1010) DT(D2005):DA(C1009) DC(D2006):DG(C1008) DT(D2007):DA(C1007) DA(D2008):DT(C1006) DG(D2009):DC(C1005) DA(D2010):DT(C1004) DC(D2011):DG(C1003) DT(D2012):DA(C1002) DG(D2013):DC(C1001) chainB ( 65) ARG74 0 0 0 0 0 0 0 0 0 1 11 9 0 ( 67) GLN76 0 0 0 0 0 0 5 8 2 0 0 0 0 ( 72) LYS81 0 0 0 0 0 0 0 4 6 4 0 0 0 prot.sequence pivkrllgwkkgeqngqeekwcekavkslvkklkktgqldelekaittqnvntkcitiprsldgRlQvshrKglphviycrlwrwpdlhshhelramelcefafnmkkdevcvnpyhyqrvet >1mht_A:S-adenosyl-L-methionine-dependent_methyltransferases; title=COVALENT TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE, DNA AND S- ADENOSYL-L-HOMOCYSTEINE organism=Haemophilus haemolyticus DNA sequence DG(B402):DC(C433) DA(B403):DT(C432) DT(B404):DA(C431) DA(B405):DT(C430) DG(B406):DC(C429) C36(B407):DG(C428) DC(B409):DG(C426) DT(B410):DA(C425) DA(B411):DT(C424) DT(B412):DA(C423) DC(B413):DG(C422) chainA ( 86) ILE86 0 0 0 0 0 0 1 3 3 0 0 ( 87) SER87 0 0 0 0 0 8 5 0 0 0 0 (237) GLN237 0 0 0 0 0 23 28 0 0 0 0 (239) GLU239 0 0 0 0 0 4 0 0 0 0 0 (240) ARG240 0 0 0 0 0 0 8 5 0 0 0 (252) SER252 0 0 0 0 0 1 0 0 0 0 0 (254) TYR254 0 0 0 0 1 0 0 0 0 0 0 prot.sequence mieikdkqltglrfidlfaglggfrlalescgaecvysnewdkyaqevyemnfgekpegditqvnektipdhdilcagfpcqafsISgkqkgfedsrgtlffdiarivrekkpkvvfmenvknfashdngntlevvkntmneldysfhakvlnaldygipqkreriymicfrndlniqnfqfpkpfelntfvkdlllpdsevehlvidrkdlvmtnqeieqttpktvrlgivgkggQgeRiystrgiaitlSaYgggifaktggylvngktrklhprecarvmgypdsykvhpstsqaykqfgnsvvinvlqyiaynigsslnfkpy >1mj2_A:Ribbon-helix-helix; title=METHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO A CONSENSUS OPERATOR SEQUENCE organism=Escherichia coli DNA sequence DT(G0):DA(F17) DA(G1):DT(F16) DG(G2):DC(F15) DA(G3):DT(F14) DC(G4):DG(F13) DG(G5):DC(F12) DT(G6):DA(F11) DC(G7):DG(F10) DT(G8):DA(F9) DA(G9):DT(F8) DG(G10):DC(F7) DA(G11):DT(F6) DC(G12):DG(F5) DG(G13):DC(F4) DT(G14):DA(F3) DC(G15):DG(F2) DT(G16):DA(F1) DA(G17):DT(F0) chainA ( 23) LYS23 0 0 0 0 0 0 0 0 0 7 9 0 0 0 0 0 0 0 ( 25) THR25 0 0 0 0 0 0 0 0 0 0 0 0 0 4 7 3 0 0 ( 27) SER27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 prot.sequence aewsgeyispyaehgkkseqvkKiTvSiplkvlkiltdertrrkvnnlrhatnsellceaflhaftgqplpddadlrkersdeipeaakeimremginpetwey >1mj2_ABCD: title=METHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO A CONSENSUS OPERATOR SEQUENCE organism=Escherichia coli DNA sequence DT(G0):DA(F17) DA(G1):DT(F16) DG(G2):DC(F15) DA(G3):DT(F14) DC(G4):DG(F13) DG(G5):DC(F12) DT(G6):DA(F11) DC(G7):DG(F10) DT(G8):DA(F9) DA(G9):DT(F8) DG(G10):DC(F7) DA(G11):DT(F6) DC(G12):DG(F5) DG(G13):DC(F4) DT(G14):DA(F3) DC(G15):DG(F2) DT(G16):DA(F1) DA(G17):DT(F0) chainA ( 23) LYS23 0 0 0 0 0 0 0 0 0 7 9 0 0 0 0 0 0 0 ( 25) THR25 0 0 0 0 0 0 0 0 0 0 0 0 0 4 7 3 0 0 ( 27) SER27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 chainB ( 23) LYS23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 7 0 ( 25) THR25 0 0 0 0 0 0 0 0 0 0 7 9 3 0 0 0 0 0 ( 27) SER27 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 chainC ( 23) LYS23 0 0 0 0 0 0 0 11 6 0 0 0 0 0 0 0 0 0 ( 25) THR25 0 0 3 3 4 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 27) SER27 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainD ( 23) LYS23 0 7 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) THR25 0 0 0 0 0 1 10 5 0 0 0 0 0 0 0 0 0 0 ( 27) SER27 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 prot.sequence aewsgeyispyaehgkkseqvkKiTvSiplkvlkiltdertrrkvnnlrhatnsellceaflhaftgqplpddadlrkersdeipeaakeimremginpetwey/aewsgeyispyaehgkkseqvkKiTvSiplkvlkiltdertrrkvnnlrhatnsellceaflhaftgqplpddadlrkersdeipeaakeimremginpetwey/aewsgeyispyaehgkkseqvkKiTvSiplkvlkiltdertrrkvnnlrhatnsellceaflhaftgqplpddadlrkersdeipeaakeimremginpetwey/aewsgeyispyaehgkkseqvkKiTvSiplkvlkiltdertrrkvnnlrhatnsellceaflhaftgqplpddadlrkersdeipeaakeimremginpetwey >1mjm_AB: title=METHIONINE APOREPRESSOR MUTANT (Q44K) COMPLEXED TO HALF OF THE CONSENSUS OPERATOR SEQUENCE organism=Escherichia coli DNA sequence DG(C401):DC(D420) DA(C402):DT(D419) DG(C403):DC(D418) DA(C404):DT(D417) DC(C405):DG(D416) DG(C406):DC(D415) DT(C407):DA(D414) DC(C408):DG(D413) DT(C409):DA(D412) DC(C410):DG(D411) chainA ( 23) LYS23 0 0 0 0 0 0 0 8 7 0 ( 25) THR25 0 0 3 7 4 0 0 0 0 0 chainB ( 23) LYS23 0 7 10 0 0 0 0 0 0 0 ( 25) THR25 0 0 0 0 0 4 9 4 0 0 prot.sequence aewsgeyispyaehgkkseqvkKiTvsiplkvlkiltdertrrkvnnlrhatnsellceaflhaftgqplpddadlrkersdeipeaakeimremginpetwey/aewsgeyispyaehgkkseqvkKiTvsiplkvlkiltdertrrkvnnlrhatnsellceaflhaftgqplpddadlrkersdeipeaakeimremginpetwey >1mjm_B:Ribbon-helix-helix; title=METHIONINE APOREPRESSOR MUTANT (Q44K) COMPLEXED TO HALF OF THE CONSENSUS OPERATOR SEQUENCE organism=Escherichia coli DNA sequence DG(C401):DC(D420) DA(C402):DT(D419) DG(C403):DC(D418) DA(C404):DT(D417) DC(C405):DG(D416) DG(C406):DC(D415) DT(C407):DA(D414) DC(C408):DG(D413) DT(C409):DA(D412) DC(C410):DG(D411) chainB ( 23) LYS23 0 7 10 0 0 0 0 0 0 0 ( 25) THR25 0 0 0 0 0 4 9 4 0 0 prot.sequence aewsgeyispyaehgkkseqvkKiTvsiplkvlkiltdertrrkvnnlrhatnsellceaflhaftgqplpddadlrkersdeipeaakeimremginpetwey >1mjo_ABCD: title=METHIONINE HOLOREPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO THE MINIMAL MET CONSENSUS OPERATOR WITH THE CENTRAL TA STEP MUTATED TO AT organism=Escherichia coli DNA sequence DT(F0):DA(G17) DA(F1):DT(G16) DG(F2):DC(G15) DA(F3):DT(G14) DC(F4):DG(G13) DG(F5):DC(G12) DT(F6):DA(G11) DC(F7):DG(G10) DA(F8):DT(G9) DT(F9):DA(G8) DG(F10):DC(G7) DA(F11):DT(G6) DC(F12):DG(G5) DG(F13):DC(G4) DT(F14):DA(G3) DC(F15):DG(G2) DT(F16):DA(G1) DA(F17):DT(G0) chainA ( 23) LYS23 0 0 0 0 0 0 0 6 5 0 0 0 0 0 0 0 0 0 ( 25) THR25 0 0 3 7 4 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 27) SER27 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 23) LYS23 0 7 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) THR25 0 0 0 0 0 1 10 7 0 0 0 0 0 0 0 0 0 0 chainC ( 23) LYS23 0 0 0 0 0 0 0 0 0 6 7 0 0 0 0 0 0 0 ( 25) THR25 0 0 0 0 0 0 0 0 0 0 0 0 0 4 7 1 0 0 ( 27) SER27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 chainD ( 23) LYS23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 7 0 ( 25) THR25 0 0 0 0 0 0 0 0 0 0 6 10 2 0 0 0 0 0 ( 27) SER27 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 prot.sequence aewsgeyispyaehgkkseqvkKiTvSiplkvlkiltdertrrkvnnlrhatnsellceaflhaftgqplpddadlrkersdeipeaakeimremginpetwey/aewsgeyispyaehgkkseqvkKiTvsiplkvlkiltdertrrkvnnlrhatnsellceaflhaftgqplpddadlrkersdeipeaakeimremginpetwey/aewsgeyispyaehgkkseqvkKiTvSiplkvlkiltdertrrkvnnlrhatnsellceaflhaftgqplpddadlrkersdeipeaakeimremginpetwey/aewsgeyispyaehgkkseqvkKiTvSiplkvlkiltdertrrkvnnlrhatnsellceaflhaftgqplpddadlrkersdeipeaakeimremginpetwey >1mjp_A:Ribbon-helix-helix; title=METHIONINE APOREPRESSOR MUTANT (Q44K) COMPLEXED TO THE MINIMAL MET CONSENSUS OPERATOR organism=Escherichia coli DNA sequence DA(D1):DT(C10) DG(D2):DC(C9) DA(D3):DT(C8) DC(D4):DG(C7) DG(D5):DC(C6) DT(D6):DA(C5) DC(D7):DG(C4) DT(D8):DA(C3) DA(D9):DT(C2) chainA ( 23) LYS23 8 9 0 0 0 0 0 0 0 ( 25) THR25 0 0 0 1 3 2 0 0 0 ( 27) SER27 0 0 0 0 0 0 0 1 0 prot.sequence aewsgeyispyaehgkkseqvkKiTvSiplkvlkiltdertrrkvnnlrhatnsellceaflhaftgqplpddadlrkersdeipeaakeimremginpetwey >1mjp_AB: title=METHIONINE APOREPRESSOR MUTANT (Q44K) COMPLEXED TO THE MINIMAL MET CONSENSUS OPERATOR organism=Escherichia coli DNA sequence DA(D1):DT(C10) DG(D2):DC(C9) DA(D3):DT(C8) DC(D4):DG(C7) DG(D5):DC(C6) DT(D6):DA(C5) DC(D7):DG(C4) DT(D8):DA(C3) DA(D9):DT(C2) chainA ( 23) LYS23 8 9 0 0 0 0 0 0 0 ( 25) THR25 0 0 0 1 3 2 0 0 0 ( 27) SER27 0 0 0 0 0 0 0 1 0 chainB ( 23) LYS23 0 0 0 0 0 0 8 4 0 ( 25) THR25 0 2 9 3 0 0 0 0 0 ( 27) SER27 1 0 0 0 0 0 0 0 0 prot.sequence aewsgeyispyaehgkkseqvkKiTvSiplkvlkiltdertrrkvnnlrhatnsellceaflhaftgqplpddadlrkersdeipeaakeimremginpetwey/aewsgeyispyaehgkkseqvkKiTvSiplkvlkiltdertrrkvnnlrhatnsellceaflhaftgqplpddadlrkersdeipeaakeimremginpetwey >1mjq_A:Ribbon-helix-helix; title=METHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO AN ALTERED MET CONSENSUS OPERATOR SEQUENCE organism=Escherichia coli DNA sequence DT(F0):DA(E17) DA(F1):DT(E16) DG(F2):DC(E15) DA(F3):DT(E14) DT(F4):DA(E13) DA(F5):DT(E12) DT(F6):DA(E11) DC(F7):DG(E10) DT(F8):DA(E9) DA(F9):DT(E8) DG(F10):DC(E7) DA(F11):DT(E6) DT(F12):DA(E5) DA(F13):DT(E4) DT(F14):DA(E3) DC(F15):DG(E2) DT(F16):DA(E1) DA(F17):DT(E0) chainA ( 23) LYS23 0 0 0 0 0 0 0 0 0 6 12 0 0 0 0 0 0 0 ( 25) THR25 0 0 0 0 0 0 0 0 0 0 0 0 1 7 4 1 0 0 ( 27) SER27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 prot.sequence aewsgeyispyaehgkkseqvkKiTvSiplkvlkiltdertrrkvnnlrhatnsellceaflhaftgqplpddadlrkersdeipeaakeimremginpetwey >1mjq_ABCD: title=METHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO AN ALTERED MET CONSENSUS OPERATOR SEQUENCE organism=Escherichia coli DNA sequence DT(E0):DA(F17) DA(E1):DT(F16) DG(E2):DC(F15) DA(E3):DT(F14) DT(E4):DA(F13) DA(E5):DT(F12) DT(E6):DA(F11) DC(E7):DG(F10) DT(E8):DA(F9) DA(E9):DT(F8) DG(E10):DC(F7) DA(E11):DT(F6) DT(E12):DA(F5) DA(E13):DT(F4) DT(E14):DA(F3) DC(E15):DG(F2) DT(E16):DA(F1) DA(E17):DT(F0) chainA ( 23) LYS23 0 0 0 0 0 0 0 12 6 0 0 0 0 0 0 0 0 0 ( 25) THR25 0 0 1 4 7 1 0 0 0 0 0 0 0 0 0 0 0 0 ( 27) SER27 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 23) LYS23 0 6 8 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) THR25 0 0 0 0 0 4 9 5 0 0 0 0 0 0 0 0 0 0 chainC ( 23) LYS23 0 0 0 0 0 0 0 0 0 7 11 0 0 0 0 0 0 0 ( 25) THR25 0 0 0 0 0 0 0 0 0 0 0 0 1 7 5 2 0 0 ( 27) SER27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 chainD ( 23) LYS23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 8 8 0 ( 25) THR25 0 0 0 0 0 0 0 0 0 0 5 10 4 0 0 0 0 0 ( 27) SER27 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 prot.sequence aewsgeyispyaehgkkseqvkKiTvSiplkvlkiltdertrrkvnnlrhatnsellceaflhaftgqplpddadlrkersdeipeaakeimremginpetwey/aewsgeyispyaehgkkseqvkKiTvsiplkvlkiltdertrrkvnnlrhatnsellceaflhaftgqplpddadlrkersdeipeaakeimremginpetwey/aewsgeyispyaehgkkseqvkKiTvSiplkvlkiltdertrrkvnnlrhatnsellceaflhaftgqplpddadlrkersdeipeaakeimremginpetwey/aewsgeyispyaehgkkseqvkKiTvSiplkvlkiltdertrrkvnnlrhatnsellceaflhaftgqplpddadlrkersdeipeaakeimremginpetwey >1mjq_GHIJ: title=METHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO AN ALTERED MET CONSENSUS OPERATOR SEQUENCE organism=Escherichia coli DNA sequence DT(K0):DA(L17) DA(K1):DT(L16) DG(K2):DC(L15) DA(K3):DT(L14) DT(K4):DA(L13) DA(K5):DT(L12) DT(K6):DA(L11) DC(K7):DG(L10) DT(K8):DA(L9) DA(K9):DT(L8) DG(K10):DC(L7) DA(K11):DT(L6) DT(K12):DA(L5) DA(K13):DT(L4) DT(K14):DA(L3) DC(K15):DG(L2) DT(K16):DA(L1) DA(K17):DT(L0) chainG ( 23) LYS23 0 0 0 0 0 0 1 12 7 0 0 0 0 0 0 0 0 0 ( 25) THR25 0 0 2 4 7 1 0 0 0 0 0 0 0 0 0 0 0 0 ( 27) SER27 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainH ( 23) LYS23 0 7 9 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) THR25 0 0 0 0 0 4 12 5 0 0 0 0 0 0 0 0 0 0 ( 27) SER27 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 chainI ( 23) LYS23 0 0 0 0 0 0 0 0 0 6 10 0 0 0 0 0 0 0 ( 25) THR25 0 0 0 0 0 0 0 0 0 0 0 0 1 7 5 3 0 0 ( 27) SER27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 chainJ ( 23) LYS23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 8 9 0 ( 25) THR25 0 0 0 0 0 0 0 0 0 0 5 12 4 0 0 0 0 0 ( 27) SER27 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 prot.sequence aewsgeyispyaehgkkseqvkKiTvSiplkvlkiltdertrrkvnnlrhatnsellceaflhaftgqplpddadlrkersdeipeaakeimremginpetwey/aewsgeyispyaehgkkseqvkKiTvSiplkvlkiltdertrrkvnnlrhatnsellceaflhaftgqplpddadlrkersdeipeaakeimremginpetwey/aewsgeyispyaehgkkseqvkKiTvSiplkvlkiltdertrrkvnnlrhatnsellceaflhaftgqplpddadlrkersdeipeaakeimremginpetwey/aewsgeyispyaehgkkseqvkKiTvSiplkvlkiltdertrrkvnnlrhatnsellceaflhaftgqplpddadlrkersdeipeaakeimremginpetwey >1mm8_A:Ribonuclease_H-like; title=CRYSTAL STRUCTURE OF TN5 TRANSPOSASE COMPLEXED WITH ME DNA organism=Escherichia coli DNA sequence DG(B101):DC(C220) DA(B102):DT(C219) DG(B103):DC(C218) DA(B104):DT(C217) DT(B105):DA(C216) DG(B106):DC(C215) DT(B107):DA(C214) DG(B108):DC(C213) DT(B109):DA(C212) DA(B110):DT(C211) DT(B111):DA(C210) DA(B112):DT(C209) DA(B113):DT(C208) DG(B114):DC(C207) DA(B115):DT(C206) DG(B116):DC(C205) DA(B117):DT(C204) DC(B118):DG(C203) chainA (238) PRO242 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 (239) GLN243 0 0 0 0 0 0 0 0 0 0 0 0 0 15 11 0 0 0 (240) LYS244 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 8 13 (251) ASN255 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 (252) ARG256 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 (319) TRP323 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 (326) LYS330 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 6 (416) SER438 0 0 0 0 0 0 0 0 0 0 0 0 2 6 6 0 0 0 (417) LYS439 0 0 0 0 0 0 0 0 0 0 0 0 12 10 8 0 0 0 (418) ARG440 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 prot.sequence alhraadwaksvfssaalgdprrtarlvnvaaqlakysgksitissegskaaqegayrfirnpnvsaeairkagamqtvklaqefpellaiedttslsyrhqvaeelgklgsiqdksrgwwvhsvllleattfrtvgllhqewwmrpddpadadekesgkwlaaaatsrlrmgsmmsnviavcdreadihaylqdklahnerfvvrskhprkdvesglylydhlknqpelggyqisiPQKgvvdkrgkrkNRparkaslslrsgritlkqgnitlnavlaeeinppkgetplkwllltsepveslaqalrvidiythrWrieefhKawktgagaerqrmekpdnlermvsilsfvavrllqlresftpqsaetvltpdecqllgyldkgkrkrkekagslqwaymaiarlggfmdSKRtgiaswgalwegwealqskldgflaakdlmaqgikig >1mnm_ABCD: title=YEAST MATALPHA2/MCM1/DNA TERNARY TRANSCRIPTION COMPLEX CRYSTAL STRUCTURE organism=SACCHAROMYCES CEREVISIAE DNA sequence DC(F28):DG(E26) DG(F29):DC(E25) DT(F30):DA(E24) DG(F31):DC(E23) DT(F32):DA(E22) DA(F33):DT(E21) DA(F34):DT(E20) DA(F35):DT(E19) DT(F36):DA(E18) DT(F37):DA(E17) DT(F38):DA(E16) DC(F39):DG(E15) DC(F40):DG(E14) DC(F41):DG(E13) DT(F42):DA(E12) DA(F43):DT(E11) DT(F44):DA(E10) DT(F45):DA(E9) DA(F46):DT(E8) DG(F47):DC(E7) DG(F48):DC(E6) DT(F49):DA(E5) DA(F50):DT(E4) DA(F51):DT(E3) DT(F52):DA(E2) chainA ( 5) ARG19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 7 21 0 0 0 0 0 ( 16) THR30 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 ( 20) VAL34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 ( 24) LYS38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 4 1 0 0 0 chainB ( 1) ARG18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 4 0 0 0 0 0 0 0 0 ( 17) VAL34 0 0 0 0 0 0 0 0 2 6 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 20) SER37 0 0 0 0 0 0 0 0 6 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 21) LYS38 0 0 0 0 0 0 0 0 0 4 7 6 11 0 0 0 0 0 0 0 0 0 0 0 0 chainC ( 20) ARG132 0 0 0 6 12 13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 23) ARG135 0 0 0 0 0 0 6 10 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 66) ASN178 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 69) SER181 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 70) ASN182 0 0 0 3 9 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 73) ARG185 0 0 11 13 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainD ( 19) TYR131 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 ( 23) ARG135 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 ( 66) ASN178 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 ( 70) ASN182 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 10 0 ( 73) ARG185 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 10 prot.sequence qkerRkieikfienkTrrhVtfsKrkhgimkkafelsvltgtqvlllvvsetglvytfstpkfepivtqqegrnliqaclnapdd/RrkieikfienktrrhVtfSKrkhgimkkafelsvltgtqvlllvvsetglvytfstpkfepivtqqegrnliqaclnapd/glvfnvvtqdminkstkpyRghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvSNrrRkekt/glvfnvvtqdminkstkpYrghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvsNrrRkekt >1msf_C:Homeodomain-like; title=SOLUTION STRUCTURE OF A SPECIFIC DNA COMPLEX OF THE MYB DNA-BINDING DOMAIN WITH COOPERATIVE RECOGNITION HELICES organism=MUS MUSCULUS DNA sequence DC(A1):DG(B32) DC(A2):DG(B31) DT(A3):DA(B30) DA(A4):DT(B29) DA(A5):DT(B28) DC(A6):DG(B27) DT(A7):DA(B26) DG(A8):DC(B25) DA(A9):DT(B24) DC(A10):DG(B23) DA(A11):DT(B22) chainC ( 40) LYS128 0 0 0 0 0 0 6 0 0 0 0 ( 43) ARG131 0 0 0 0 0 3 1 0 3 0 0 ( 44) GLU132 0 0 0 0 0 8 4 0 0 0 0 ( 48) ASN136 0 0 0 6 0 0 0 0 0 0 0 ( 90) ASP178 0 0 0 0 0 0 1 3 0 0 0 ( 91) ASN179 0 0 0 0 4 5 0 0 0 0 0 ( 94) LYS182 0 0 0 0 0 11 10 0 0 0 0 ( 95) ASN183 0 0 12 11 3 0 0 0 0 0 0 ( 96) HIS184 0 0 1 0 0 0 0 0 0 0 0 ( 98) ASN186 0 0 0 0 3 0 0 0 0 0 0 ( 99) SER187 0 4 2 1 0 0 0 0 0 0 0 (100) THR188 1 2 0 0 0 0 0 0 0 0 0 prot.sequence mlikgpwtkeedqrviklvqkygpkrwsviakhlkgrigKqcRErwhNhlnpevkktswteeedriiyqahkrlgnrwaeiakllpgrtDNaiKNHwNSTmrrkv >1mtl_A:Uracil-DNA_glycosylase-like; title=NON-PRODUCTIVE MUG-DNA COMPLEX organism=Escherichia coli DNA sequence DC(C201):DG(D224) DG(C202):DC(D223) DC(C203):DG(D222) DG(C204):DC(D221) DA(C205):DT(D220) DG(C206):AAB(D219) AAB(C207):DG(D218) DT(C208):DA(D217) DC(C209):DG(D216) DG(C210):DC(D215) DC(C211):DG(D214) DG(C212):DC(D213) chainA ( 72) GLU79 1 0 0 0 0 0 0 0 0 0 0 0 (103) GLN110 0 0 1 6 14 0 0 0 0 0 0 0 (137) LEU144 9 0 0 0 0 0 0 0 0 0 0 0 (139) ARG146 5 10 2 0 0 0 0 0 0 0 0 0 prot.sequence vedilapglrvvfcginpglssagtgfpfahpanrfwkviyqagftdrqlkpqeaqhlldyrcgvtklvanEvskqelhaggrkliekiedyqpqalailgkQayeqgfsqrgaqwgkqtltigstqiwvlpnpsgLsRvsleklveayreldqalv >1mtl_AB: title=NON-PRODUCTIVE MUG-DNA COMPLEX organism=Escherichia coli DNA sequence DC(C201):DG(D224) DG(C202):DC(D223) DC(C203):DG(D222) DG(C204):DC(D221) DA(C205):DT(D220) DG(C206):AAB(D219) AAB(C207):DG(D218) DT(C208):DA(D217) DC(C209):DG(D216) DG(C210):DC(D215) DC(C211):DG(D214) DG(C212):DC(D213) chainA ( 72) GLU79 1 0 0 0 0 0 0 0 0 0 0 0 (103) GLN110 0 0 1 6 14 0 0 0 0 0 0 0 (137) LEU144 9 0 0 0 0 0 0 0 0 0 0 0 (139) ARG146 5 10 2 0 0 0 0 0 0 0 0 0 chainB ( 32) HIS32 1 0 0 0 0 0 0 0 0 0 0 0 ( 33) PRO33 4 0 0 0 0 0 0 0 0 0 0 0 ( 34) ALA34 10 0 0 0 0 0 0 0 0 0 0 0 ( 36) ARG36 7 0 0 0 0 0 0 0 0 0 0 0 prot.sequence vedilapglrvvfcginpglssagtgfpfahpanrfwkviyqagftdrqlkpqeaqhlldyrcgvtklvanEvskqelhaggrkliekiedyqpqalailgkQayeqgfsqrgaqwgkqtltigstqiwvlpnpsgLsRvsleklveayreldqalv/mvedilapglrvvfcginpglssagtgfpfaHPAnRfwkviyqagftdrqlkpqeaqhlldyrcgvtklvdrpnevskqelhaggrkliekiedyqpqalailgkqayeqgfsqrgaqwgkqtltigstqiwvlpnpsglsrvsleklveayreldqalv >1muh_A:Ribonuclease_H-like; title=CRYSTAL STRUCTURE OF TN5 TRANSPOSASE COMPLEXED WITH TRANSPOSON END DNA organism=Escherichia coli DNA sequence DG(C3):DC(B18) DA(C4):DT(B17) DC(C5):DG(B16) DT(C6):DA(B15) DC(C7):DG(B14) DT(C8):DA(B13) DT(C9):DA(B12) DA(C10):DT(B11) DT(C11):DA(B10) DA(C12):DT(B9) DC(C13):DG(B8) DA(C14):DT(B7) DC(C15):DG(B6) DA(C16):DT(B5) DA(C17):DT(B4) DG(C18):DC(B3) DT(C19):DA(B2) DC(C20):DG(B1) chainA (239) GLN243 0 0 0 9 15 0 0 0 0 0 0 0 0 0 0 0 0 0 (240) LYS244 5 3 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (319) TRP323 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (326) LYS330 6 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (416) SER438 0 0 0 4 6 3 0 0 0 0 0 0 0 0 0 0 0 0 (417) LYS439 0 0 0 11 11 10 0 0 0 0 0 0 0 0 0 0 0 0 (418) ARG440 0 0 0 0 0 0 6 1 0 0 0 0 0 0 0 0 0 0 prot.sequence alhraadwaksvfssaalgdprrtarlvnvaaqlakysgksitissegskaaqegayrfirnpnvsaeairkagamqtvklaqefpellaiedttslsyrhqvaeelgklgsiqdksrgwwvhsvllleattfrtvgllhqewwmrpddpadadekesgkwlaaaatsrlrmgsmmsnviavcdreadihaylqdklahnerfvvrskhprkdvesglylydhlknqpelggyqisipQKgvvdkrgkrknrparkaslslrsgritlkqgnitlnavlaeeinppkgetplkwllltsepveslaqalrvidiythrWrieefhKawktgagaerqrmeepdnlermvsilsfvavrllqlresftpqsaetvltpdecqllgyldkgkrkrkekagslqwaymaiarlggfmdSKRtgiaswgalwegwealqskldgflaakdlmaqgikig >1mwj_A:Uracil-DNA_glycosylase-like; title=CRYSTAL STRUCTURE OF A MUG-DNA PSEUDO SUBSTRATE COMPLEX organism=Escherichia coli DNA sequence DC(D1) DG(D2) DC(D3) DG(D4) DA(D5) DG(D6) DU(D7) DT(D8) DC(D9) DG(D10) DC(D11) DG(D12) chainA (146) ARG146 0 0 0 0 0 0 0 0 0 0 25 38 prot.sequence mvedilapglrvvfcginpglssagtgfpfahpanrfwkviyqagftdrqlkpqeaqhlldyrcgvtklvdrptvqanevskqelhaggrkliekiedyqpqalailgkqayeqgfsqrgaqwgkqtltigstqiwvlpnpsglsRvsleklveayreldqalvv >1n39_A:DNA-glycosylase;TATA-box_binding_protein-like; title=STRUCTURAL AND BIOCHEMICAL EXPLORATION OF A CRITICAL AMINO ACID IN HUMAN 8-OXOGUANINE GLYCOSYLASE organism=Homo sapiens DNA sequence DG(C16):DC(B15) DC(C17):DG(B14) DG(C18):DC(B13) DT(C19):DA(B12) DC(C20):DG(B11) DC(C21):DG(B10) DA(C22):DT(B9) 3DR(C23):DC(B8) DG(C24):DC(B7) DT(C25):DA(B6) DC(C26):DG(B5) DT(C27):DA(B4) DA(C28):DT(B3) DC(C29):DG(B2) DC(C30):DG(B1) chainA (138) ASN149 0 0 0 0 0 0 16 4 32 0 0 0 0 0 0 (139) ASN150 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 (140) ASN151 0 0 0 0 0 1 8 0 0 0 0 0 0 0 0 (143) ARG154 0 0 0 0 0 0 30 12 0 0 0 0 0 0 0 (192) TYR203 0 0 0 0 0 0 0 16 8 0 0 0 0 0 0 (193) ARG204 0 0 0 0 0 0 0 11 0 0 0 0 0 0 0 prot.sequence gseghrtlastpalwasipcprselrldlvlpsgqsfrwreqspahwsgvladqvwtltqteeqlhctvyrsqasrptpdeleavrkyfqldvtlaqlyhhwgsvdshfqevaqkfqgvrllrqdpieclfsficssNNNiaRitgmverlcqafgprliqlddvtyhgfpslqalagpeveahlrklglgYRaryvsasaraileeqgglawlqqlressyeeahkalcilpgvgtkvadciclmaldkpqavpvevhmwhiaqrdyswhpttsqakgpspqtnkelgnffrslwgpyagwaqavlfsadlrq >1n3a_A:DNA-glycosylase;TATA-box_binding_protein-like; title=STRUCTURAL AND BIOCHEMICAL EXPLORATION OF A CRITICAL AMINO ACID IN HUMAN 8-OXOGUANINE GLYCOSYLASE organism=Homo sapiens DNA sequence DG(C16):DC(B15) DC(C17):DG(B14) DG(C18):DC(B13) DT(C19):DA(B12) DC(C20):DG(B11) DC(C21):DG(B10) DA(C22):DT(B9) 3DR(C23):DC(B8) DG(C24):DC(B7) DT(C25):DA(B6) DC(C26):DG(B5) DT(C27):DA(B4) DA(C28):DT(B3) DC(C29):DG(B2) DC(C30):DG(B1) chainA (138) ASN149 0 0 0 0 0 0 16 5 31 0 0 0 0 0 0 (139) ASN150 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 (140) ASN151 0 0 0 0 0 1 8 0 0 0 0 0 0 0 0 (143) ARG154 0 0 0 0 0 0 24 11 0 0 0 0 0 0 0 (192) TYR203 0 0 0 0 0 0 0 15 10 0 0 0 0 0 0 (193) ARG204 0 0 0 0 0 0 0 11 0 0 0 0 0 0 0 (196) TYR207 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 (282) PRO293 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 prot.sequence gseghrtlastpalwasipcprselrldlvlpsgqsfrwreqspahwsgvladqvwtltqteeqlhctvyrsqasrptpdeleavrkyfqldvtlaqlyhhwgsvdshfqevaqkfqgvrllrqdpieclfsficssNNNiaRitgmverlcqafgprliqlddvtyhgfpslqalagpeveahlrklglgYRarYvsasaraileeqgglawlqqlressyeeahkalcilpgvgtkvadciclmaldkpqavpvqvhmwhiaqrdyswhpttsqakgpsPqtnkelgnffrslwgpyagwaqavlfsadlrq >1n3c_A:DNA-glycosylase;TATA-box_binding_protein-like; title=STRUCTURAL AND BIOCHEMICAL EXPLORATION OF A CRITICAL AMINO ACID IN HUMAN 8-OXOGUANINE GLYCOSYLASE organism=Homo sapiens DNA sequence DG(C16):DC(B15) DC(C17):DG(B14) DG(C18):DC(B13) DT(C19):DA(B12) DC(C20):DG(B11) DC(C21):DG(B10) DA(C22):DT(B9) 8OG(C23):DC(B8) DG(C24):DC(B7) DT(C25):DA(B6) DC(C26):DG(B5) DT(C27):DA(B4) DA(C28):DT(B3) DC(C29):DG(B2) DC(C30):DG(B1) chainA ( 37) PHE45 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 (133) PHE144 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 (136) SER147 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 (138) ASN149 0 0 0 0 0 0 14 5 34 0 0 0 0 0 0 (139) ASN150 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 (140) ASN151 0 0 0 0 0 1 10 0 0 0 0 0 0 0 0 (141) ILE152 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 (143) ARG154 0 0 0 0 0 0 26 10 0 0 0 0 0 0 0 (144) ILE155 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 (192) TYR203 0 0 0 0 0 0 0 18 9 0 0 0 0 0 0 (193) ARG204 0 0 0 0 0 0 0 11 0 0 0 0 0 0 0 (196) TYR207 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 (238) LYS249 0 0 0 0 0 0 0 11 0 0 0 0 0 0 0 (242) CYS253 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 (246) MET257 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 (255) PRO266 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 (257) ASN268 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 (304) GLN315 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 (308) PHE319 0 0 0 0 0 0 0 39 0 0 0 0 0 0 0 prot.sequence gseghrtlastpalwasipcprselrldlvlpsgqsfrwreqspahwsgvladqvwtltqteeqlhctvyrsqasrptpdeleavrkyfqldvtlaqlyhhwgsvdshfqevaqkfqgvrllrqdpieclfsficssNNNiaRitgmverlcqafgprliqlddvtyhgfpslqalagpeveahlrklglgYRarYvsasaraileeqgglawlqqlressyeeahkalcilpgvgtkvadciclmaldkpqavpvnvhmwhiaqrdyswhpttsqakgpspqtnkelgnffrslwgpyagwaqavlfsadlrq >1n48_A:DNA/RNA_polymerases;Lesion_bypass_DNA_polymerase_Y-family,_little_finger_domain; title=Y-FAMILY DNA POLYMERASE DPO4 IN COMPLEX WITH DNA CONTAINING ABASIC LESION organism=Sulfolobus solfataricus DNA sequence DG(B1801):DC(C1918) DG(B1802):DC(C1917) DG(B1803):DC(C1916) DG(B1804):DC(C1915) DG(B1805):DC(C1914) DA(B1806):DT(C1913) DA(B1807):DT(C1912) DG(B1808):DC(C1911) DG(B1809):DC(C1910) DA(B1810):DT(C1909) DC(B1811):DG(C1908) DT(B1812):DA(C1907) ATP(B1814):DT(C1906) chainA ( 7) ASP7 0 0 0 0 0 0 0 0 0 0 0 0 6 ( 10) TYR10 0 0 0 0 0 0 0 0 0 0 0 0 2 ( 42) ALA42 0 0 0 0 0 0 0 0 0 0 0 0 4 ( 48) TYR48 0 0 0 0 0 0 0 0 0 0 0 0 1 ( 51) ARG51 0 0 0 0 0 0 0 0 0 0 0 0 7 ( 57) ALA57 0 0 0 0 0 0 0 0 0 0 0 0 4 (105) ASP105 0 0 0 0 0 0 0 0 0 0 0 0 5 (106) GLU106 0 0 0 0 0 0 0 0 0 0 0 0 1 (159) LYS159 0 0 0 0 0 0 0 0 0 0 0 0 5 (243) LYS243 0 0 0 8 7 1 0 0 0 0 0 0 0 prot.sequence mivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgAvatanyearkfgvkagipiveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyreaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldiadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtrvrKsigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgrtfphgisketaysesvkllqkileederkirrigvrfskfie >1n56_B:DNA/RNA_polymerases;Lesion_bypass_DNA_polymerase_Y-family,_little_finger_domain; title=Y-FAMILY DNA POLYMERASE DPO4 IN COMPLEX WITH DNA CONTAINING ABASIC LESION organism=Sulfolobus solfataricus DNA sequence DT(F1905):ATP(B1804) DA(F1907):DT(E1812) DG(F1908):DC(E1811) DT(F1909):DA(E1810) DC(F1910):DG(E1809) DC(F1911):DG(E1808) DT(F1912):DA(E1807) DT(F1913):DA(E1806) DC(F1914):DG(E1805) DC(F1915):ATP(B1804) DC(F1916):DG(E1803) DC(F1917):DG(E1802) DC(F1918):DG(E1801) chainB ( 7) ASP7 6 0 0 0 0 0 0 0 0 6 0 0 0 ( 9) ASP9 1 0 0 0 0 0 0 0 0 1 0 0 0 ( 10) TYR10 2 0 0 0 0 0 0 0 0 2 0 0 0 ( 11) PHE11 1 0 0 0 0 0 0 0 0 1 0 0 0 ( 32) VAL32 4 0 0 0 0 0 0 0 0 0 0 0 0 ( 42) ALA42 7 0 0 0 0 0 0 0 0 0 0 0 0 ( 44) ALA44 2 0 0 0 0 0 0 0 0 2 0 0 0 ( 45) THR45 4 0 0 0 0 0 0 0 0 4 0 0 0 ( 48) TYR48 5 0 0 0 0 0 0 0 0 5 0 0 0 ( 51) ARG51 11 0 0 0 0 0 0 0 0 11 0 0 0 ( 57) ALA57 4 0 0 0 0 0 0 0 0 4 0 0 0 ( 76) MET76 1 0 0 0 0 0 0 0 0 1 0 0 0 (105) ASP105 4 0 0 0 0 0 0 0 0 4 0 0 0 (106) GLU106 1 0 0 0 0 0 0 0 0 1 0 0 0 (159) LYS159 6 0 0 0 0 0 0 0 0 6 0 0 0 prot.sequence mivlfvdfdyfyaqveevlnpslkgkpvvvcVfsgrfedsgAvatanyearkfgvkagipiveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyreaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldiadvpgignitaeklkklginklvdtlsiefdklkgmigeaKakylislardeynepirtrvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgrtfphgisketaysesvkllqkileederkirrigvrfskfi >1n5y_AB:DNA/RNA_polymerases;Ribonuclease_H-like; title=HIV-1 REVERSE TRANSCRIPTASE CROSSLINKED TO POST-TRANSLOCATION AZTMP- TERMINATED DNA (COMPLEX P) organism=HUMAN IMMUNODEFICIENCY VIRUS 1 DNA sequence DC(P803):DG(T725) DA(P804):DT(T724) DG(P805):DC(T723) DT(P806):DA(T722) DC(P807):DG(T721) DC(P808):DG(T720) DC(P809):DG(T719) DT(P810):DA(T718) DG(P811):DC(T717) DT(P812):DA(T716) DT(P813):DA(T715) DC(P814):DG(T714) DG(P815):DC(T713) DG(P816):DC(T712) MRG(P817):DC(T711) DC(P818):DG(T710) DG(P819):DC(T709) DC(P820):DG(T708) DC(P821):DG(T707) ATM(P822):DA(T706) chainA ( 94) ILE94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 (183) TYR183 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 5 0 (184) MET184 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3 (258) CYS258 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 (283) LEU283 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 (356) ARG356 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 0 0 0 0 0 (448) ARG448 0 0 4 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB prot.sequence pispietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaikkkdstkwrklvdfrelnkrtqdfwevqlgIphpaglkkkksvtvldvgdayfsvpldedfrkytaftipsinnetpgiryqynvlpqgwkgspaifqssmtkilepfkkqnpdiviyqYMddlyvgsdleigqhrtkieelrqhllrwglttpdkkhqkeppflwmgyelhpdkwtvqpivlpekdswtvndicklvgklnwasqiypgikvrqlskllrgtkalteviplteeaelelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyaRmrgahtndvkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwipewefvntpplvklwyqlekepivgaetfyvdgaanRetklgkagyvtnkgrqkvvpltnttnqktelqaiylalqdsglevnivtdsqyalgiiqaqpdkseselvnqiieqlikkekvylawvpahkgiggneqvdklvsagirk/pispietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaikkkdstkwrklvdfrelnkrtqdfwevqlgIphpaglkkkksvtvldvgdayfsvpldedfrkytaftipsinnetpgiryqynvlpqgwkgspaifqssmtkilepfkkqnpdiviyqYMddlyvgsdleigqhrtkieelrqhllrwglttpdkkhqkeppflwmgyelhpdkwtvqpivlpekdswtvndiqklvgklnwasqiypgikvrqlskllrgtkalteviplteeaelelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyaRmrgahtndvkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwipewefvntpplvklwyql >1n6j_AB: title=STRUCTURAL BASIS OF SEQUENCE-SPECIFIC RECRUITMENT OF HISTONE DEACETYLASES BY MYOCYTE ENHANCER FACTOR-2 organism=HOMO SAPIENS DNA sequence DA(C3):DT(D16) DG(C4):DC(D15) DC(C5):DG(D14) DT(C6):DA(D13) DA(C7):DT(D12) DT(C8):DA(D11) DT(C9):DA(D10) DT(C10):DA(D9) DA(C11):DT(D8) DT(C12):DA(D7) DA(C13):DT(D6) DA(C14):DT(D5) DG(C15):DC(D4) DC(C16):DG(D3) chainA ( 2) ARG3 0 0 15 12 7 0 0 0 0 0 0 0 0 0 ( 22) LYS23 0 0 1 2 0 0 0 0 0 0 0 0 0 0 chainB ( 2) ARG3 0 0 0 0 0 0 0 0 0 9 14 2 0 0 ( 22) LYS23 0 0 0 0 0 0 0 0 0 0 4 1 0 0 prot.sequence gRkkiqisrildqrnrqvtftKrkfglmkkayelsvlcdceialiifnsanrlfqyastdmdrvllkyteysephesrtntdiletlkrrgig/gRkkiqisrildqrnrqvtftKrkfglmkkayelsvlcdceialiifnsanrlfqyastdmdrvllkyteysephesrtntdiletlkrr >1n6q_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=HIV-1 REVERSE TRANSCRIPTASE CROSSLINKED TO PRE-TRANSLOCATION AZTMP- TERMINATED DNA (COMPLEX N) organism=HUMAN IMMUNODEFICIENCY VIRUS 1 DNA sequence DC(P803):DG(T725) DA(P804):DT(T724) DG(P805):DC(T723) DT(P806):DA(T722) DC(P807):DG(T721) DC(P808):DG(T720) DC(P809):DG(T719) DT(P810):DA(T718) DG(P811):DC(T717) DT(P812):DA(T716) DT(P813):DA(T715) DC(P814):DG(T714) DG(P815):DC(T713) DG(P816):DC(T712) MRG(P817):DC(T711) DC(P818):DG(T710) DG(P819):DC(T709) DC(P820):DG(T708) DC(P821):DG(T707) DA(P822):DT(T706) ATM(P823):DA(T705) chainA ( 94) ILE94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 (115) TYR115 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 (151) GLN151 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16 (157) PRO157 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 (183) TYR183 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 7 0 0 (258) CYS258 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 (261) VAL261 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 (283) LEU283 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 (356) ARG356 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 (448) ARG448 0 0 6 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence pispietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaikkkdstkwrklvdfrelnkrtqdfwevqlgIphpaglkkkksvtvldvgdayfsvpldedfrkytaftipsinnetpgiryqynvlpQgwkgsPaifqssmtkilepfkkqnpdiviyqYmddlyvgsdleigqhrtkieelrqhllrwglttpdkkhqkeppflwmgyelhpdkwtvqpivlpekdswtvndicklvgklnwasqiypgikvrqlskllrgtkalteviplteeaelelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyaRmrgahtndvkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwipewefvntpplvklwyqlekepivgaetfyvdgaanRetklgkagyvtnkgrqkvvpltnttnqktelqaiylalqdsglevnivtdsqyalgiiqaqpdkseselvnqiieqlikkekvylawvpahkgiggneqvdklvsagirk >1n6q_AB:DNA/RNA_polymerases;Ribonuclease_H-like; title=HIV-1 REVERSE TRANSCRIPTASE CROSSLINKED TO PRE-TRANSLOCATION AZTMP- TERMINATED DNA (COMPLEX N) organism=HUMAN IMMUNODEFICIENCY VIRUS 1 DNA sequence DA(T705):ATM(P823) DT(T706):DA(P822) DG(T707):DC(P821) DG(T708):DC(P820) DC(T709):DG(P819) DG(T710):DC(P818) DC(T711):MRG(P817) DC(T712):DG(P816) DC(T713):DG(P815) DG(T714):DC(P814) DA(T715):DT(P813) DA(T716):DT(P812) DC(T717):DG(P811) DA(T718):DT(P810) DG(T719):DC(P809) DG(T720):DC(P808) DG(T721):DC(P807) DA(T722):DT(P806) DC(T723):DG(P805) DT(T724):DA(P804) DG(T725):DC(P803) chainA ( 94) ILE94 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (115) TYR115 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (151) GLN151 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (157) PRO157 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (183) TYR183 0 0 7 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (258) CYS258 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (261) VAL261 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (283) LEU283 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (356) ARG356 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 (448) ARG448 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 6 0 0 chainB prot.sequence pispietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaikkkdstkwrklvdfrelnkrtqdfwevqlgIphpaglkkkksvtvldvgdayfsvpldedfrkytaftipsinnetpgiryqynvlpQgwkgsPaifqssmtkilepfkkqnpdiviyqYmddlyvgsdleigqhrtkieelrqhllrwglttpdkkhqkeppflwmgyelhpdkwtvqpivlpekdswtvndicklvgklnwasqiypgikvrqlskllrgtkalteviplteeaelelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyaRmrgahtndvkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwipewefvntpplvklwyqlekepivgaetfyvdgaanRetklgkagyvtnkgrqkvvpltnttnqktelqaiylalqdsglevnivtdsqyalgiiqaqpdkseselvnqiieqlikkekvylawvpahkgiggneqvdklvsagirk/pispietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaikkkdstkwrklvdfrelnkrtqdfwevqlgIphpaglkkkksvtvldvgdayfsvpldedfrkytaftipsinnetpgiryqynvlpQgwkgsPaifqssmtkilepfkkqnpdiviyqYmddlyvgsdleigqhrtkieelrqhllrwglttpdkkhqkeppflwmgyelhpdkwtvqpivlpekdswtvndiqklvgklnwasqiypgikvrqlskllrgtkalteviplteeaelelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyaRmrgahtndvkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwipewefvntpplvklwyql >1nfk_AB: title=STRUCTURE OF THE NUCLEAR FACTOR KAPPA-B (NF-KB) P50 HOMODIMER organism=MUS MUSCULUS DNA sequence DG(C2):DC(D11) DG(C3):DC(D10) DG(C4):DC(D9) DA(C5):DT(D8) DA(C6):DT(D7) DT(C7):DA(D6) DT(C8):DA(D5) DC(C9):DG(D4) DC(C10):DG(D3) DC(C11):DG(D2) chainA ( 16) ARG54 0 0 0 0 0 0 0 2 11 12 ( 18) ARG56 0 0 0 0 0 0 0 0 1 13 ( 19) TYR57 0 0 0 0 0 0 12 2 0 0 ( 21) CYS59 0 0 0 0 0 0 0 3 0 0 ( 22) GLU60 0 0 0 0 0 0 0 11 8 0 (203) LYS241 0 0 0 0 0 0 4 4 0 0 (205) PRO243 0 0 0 0 0 1 0 0 0 0 (234) LYS272 0 0 0 0 0 3 1 0 0 0 (267) ARG305 0 0 4 5 0 0 0 0 0 0 chainB ( 16) ARG54 13 9 3 0 0 0 0 0 0 0 ( 18) ARG56 13 0 0 0 0 0 0 0 0 0 ( 19) TYR57 0 0 2 9 0 0 0 0 0 0 ( 21) CYS59 0 0 3 0 0 0 0 0 0 0 ( 22) GLU60 3 7 14 0 0 0 0 0 0 0 (203) LYS241 0 4 8 0 0 0 0 0 0 0 (205) PRO243 0 0 0 0 1 0 0 0 0 0 (234) LYS272 0 0 0 0 1 0 0 0 0 0 (267) ARG305 0 0 0 0 0 0 0 1 0 0 prot.sequence gpylqileqpkqrgfRfRYvCEgpshgglpgasseknkksypqvkicnyvgpakvivqlvtngknihlhahslvgkhcedgvctvtagpkdmvvgfanlgilhvtkkkvfetlearmteacirgynpgllvhsdlaylqaegggdrqltdrekeiirqaavqqtkemdlsvvrlmftaflpdstgsftrrlepvvsdaiydsKaPnasnlkivrmdrtagcvtggeeiyllcdKvqkddiqirfyeeeenggvwegfgdfsptdvhRqfaivfktpkykdvnitkpasvfvqlrrksdletsepkpflyype/gpylqileqpkqrgfRfRYvCEgpshgglpgasseknkksypqvkicnyvgpakvivqlvtngknihlhahslvgkhcedgvctvtagpkdmvvgfanlgilhvtkkkvfetlearmteacirgynpgllvhsdlaylqaegggdrqltdrekeiirqaavqqtkemdlsvvrlmftaflpdstgsftrrlepvvsdaiydsKaPnasnlkivrmdrtagcvtggeeiyllcdKvqkddiqirfyeeeenggvwegfgdfsptdvhRqfaivfktpkykdvnitkpasvfvqlrrksdletsepkpflyype >1ng9_A:DNA_repair_protein_MutS,_domain_III;P-loop_containing_nucleoside_triphosphate_hydrolases; title=E.COLI MUTS R697A: AN ATPASE-ASYMMETRY MUTANT organism=Escherichia coli DNA sequence DA(E1):DT(F30) DG(E2):DC(F29) DC(E3):DG(F28) DT(E4):DA(F27) DG(E5):DC(F26) DC(E6):DG(F25) DC(E7):DG(F24) DA(E8):DT(F23) DG(E9):DT(F22) DG(E10):DC(F21) DC(E11):DG(F20) DA(E12):DT(F19) DC(E13):DG(F18) DC(E14):DG(F17) DA(E15):DT(F16) DG(E16):DC(F15) DT(E17):DA(F14) chainA ( 33) MET33 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 ( 36) PHE36 0 0 0 0 0 0 0 21 45 0 0 0 0 0 0 0 0 ( 38) GLU38 0 0 0 0 0 0 0 0 13 5 0 0 0 0 0 0 0 ( 58) ARG58 0 0 0 0 0 0 0 0 0 4 3 0 0 0 0 0 0 ( 68) MET68 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 ( 72) PRO72 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 prot.sequence msaienfdahtpmmqqylrlkaqhpeillfyrMgdFyElfyddakrasqlldisltkRgasagepipMagiPyhavenylaklvnqgesvaiceqigdpatskgpverkvvrivtpgtisdeallqerqdnllaaiwqdskgfgyatldissgrfrlsepadretmaaelqrtnpaellyaedfaemsliegrrglrrrplwefeidtarqqlnlqfgtrdlvgfgvenaprglcaagcllqyakdtqrttlphirsitmereqdsiimdaatrrnleitqnlaggaentlasvldctvtpmgsrmlkrwlhmpvrdtrvllerqqtigalqdftaglqpvlrqvgdlerilarlalrtarprdlarmrhafqqlpelraqletvdsapvqalrekmgefaelrdlleraiidtppvlvrdggviasgyneeldewraladgatdylerlevrerertgldtlkvgfnavhgyyiqisrgqshlapinymrrqtlknaeryiipelkeyedkvltskgkalalekqlyeelfdlllphlealqqsasalaeldvlvnlaeraytlnytcptfidkpgiritegrhpvveqvlnepfianplnlspqrrmliitgpnmggkstymrqtalialmayigsyvpaqkveigpidriftrvgagrstfmvemtetanilhnateyslvlmdeigagtstydglslawacaenlankikaltlfathyfeltqlpekmegvanvhldalehgdtiafmhsvqdgaasksyglavaalagvpkevikrarqklrelesis >1ng9_AB:DNA_repair_protein_MutS,_domain_III;P-loop_containing_nucleoside_triphosphate_hydrolases; title=E.COLI MUTS R697A: AN ATPASE-ASYMMETRY MUTANT organism=Escherichia coli DNA sequence DA(F14):DT(E17) DC(F15):DG(E16) DT(F16):DA(E15) DG(F17):DC(E14) DG(F18):DC(E13) DT(F19):DA(E12) DG(F20):DC(E11) DC(F21):DG(E10) DT(F22):DG(E9) DT(F23):DA(E8) DG(F24):DC(E7) DG(F25):DC(E6) DC(F26):DG(E5) DA(F27):DT(E4) DG(F28):DC(E3) DC(F29):DG(E2) DT(F30):DA(E1) chainA ( 33) MET33 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 ( 36) PHE36 0 0 0 0 0 0 0 0 45 21 0 0 0 0 0 0 0 ( 38) GLU38 0 0 0 0 0 0 0 5 13 0 0 0 0 0 0 0 0 ( 58) ARG58 0 0 0 0 0 0 3 4 0 0 0 0 0 0 0 0 0 ( 68) MET68 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 ( 72) PRO72 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 chainB prot.sequence msaienfdahtpmmqqylrlkaqhpeillfyrMgdFyElfyddakrasqlldisltkRgasagepipMagiPyhavenylaklvnqgesvaiceqigdpatskgpverkvvrivtpgtisdeallqerqdnllaaiwqdskgfgyatldissgrfrlsepadretmaaelqrtnpaellyaedfaemsliegrrglrrrplwefeidtarqqlnlqfgtrdlvgfgvenaprglcaagcllqyakdtqrttlphirsitmereqdsiimdaatrrnleitqnlaggaentlasvldctvtpmgsrmlkrwlhmpvrdtrvllerqqtigalqdftaglqpvlrqvgdlerilarlalrtarprdlarmrhafqqlpelraqletvdsapvqalrekmgefaelrdlleraiidtppvlvrdggviasgyneeldewraladgatdylerlevrerertgldtlkvgfnavhgyyiqisrgqshlapinymrrqtlknaeryiipelkeyedkvltskgkalalekqlyeelfdlllphlealqqsasalaeldvlvnlaeraytlnytcptfidkpgiritegrhpvveqvlnepfianplnlspqrrmliitgpnmggkstymrqtalialmayigsyvpaqkveigpidriftrvgagrstfmvemtetanilhnateyslvlmdeigagtstydglslawacaenlankikaltlfathyfeltqlpekmegvanvhldalehgdtiafmhsvqdgaasksyglavaalagvpkevikrarqklrelesis/ahtpmmqqylrlkaqhpeillfyrmgdfyelfYddAkRasqlldisltpipmagipyHavenylaklVnqgEsvaiceqverkvvrivtpgtisdeallqerqdnllaaiwqdskgfgyatldissgrfrlsepadretmaaelqrtnpaellyaedfaemsliegrrglrrrplwefeidtarqqlnlqfgtrdlvgfgvenaprglcaagcllqyakdtqrttlphirsitmereqdsiimdaatrrnleitqnlaggaentlasvldctvtpmgsrmlkrwlhmpvrdtrvllerqqtigalqdftaglqpvlrqvgdlerilarlalrtarprdlarmrhafqqlpelraqletvdsapvqalrekmgefaelrdlleraiidtppvlvrdggviasgyneeldewraladgatdylerlevrerertgldtlkvgfnavhgyyiqisrgqshlapinymrrqtlknaeryiipelkeyedkvltskgkalalekqlyeelfdlllphlealqqsasalaeldvlvnlaeraytlnytcptfidkpgiritegrhpvveqvlnepfianplnlspqrrmliitgpnmggkstymrqtalialmayigsyvpaqkveigpidriftrvgastfmvemtetanilhnateyslvlmdeigagtstydglslawacaenlankikaltlfathyfeltqlpekmegvanvhldalehgdtiafmhsvqdgaasksyglavaalagvpkevikrarqklrelesis >1ngm_I:TATA-box_binding_protein-like; title=CRYSTAL STRUCTURE OF A YEAST BRF1-TBP-DNA TERNARY COMPLEX organism=SACCHAROMYCES CEREVISIAE DNA sequence DC(K1):DG(L19) DT(K2):DA(L18) DA(K3):DT(L17) DT(K4):DA(L16) DA(K5):DT(L15) DA(K6):DT(L14) DA(K7):DT(L13) DA(K8):DT(L12) DA(K9):DT(L11) DA(K10):DT(L10) DA(K11):DT(L9) DT(K12):DA(L8) DG(K13):DC(L7) DT(K14):DA(L6) DT(K15):DA(L5) DT(K16):DA(L4) DT(K17):DA(L3) DT(K18):DA(L2) DT(K19):DA(L1) chainI ( 9) ASN69 0 0 0 0 8 5 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 11) VAL71 0 0 0 0 0 8 2 0 0 0 0 0 0 0 0 0 0 0 0 ( 39) PHE99 0 0 0 0 0 0 0 9 2 0 0 0 0 0 0 0 0 0 0 ( 54) LEU114 0 0 0 0 0 0 2 5 0 0 0 0 0 0 0 0 0 0 0 ( 56) PHE116 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 ( 62) VAL122 0 0 0 0 0 0 4 3 0 0 0 0 0 0 0 0 0 0 0 ( 64) THR124 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 ( 99) ASN159 0 0 0 0 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 (101) VAL161 0 0 0 2 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (130) PHE190 0 9 24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (131) PRO191 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (145) LEU205 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (147) PHE207 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (153) VAL213 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (155) THR215 0 0 0 3 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence sgivptlqNiVatvtlgcrldlktvalharnaeynpkrFaavimrirepkttaLiFasgkmVvTgakseddsklasrkyariiqkigfaakftdfkiqNiVgscdvkfpirleglafshgtfssyepelFPgliyrmvkpkivlLiFvsgkiVlTgakqreeiyqafeaiypvlsefrkm >1nh2_AC:TATA-box_binding_protein-like; title=CRYSTAL STRUCTURE OF A YEAST TFIIA/TBP/DNA COMPLEX organism=SACCHAROMYCES CEREVISIAE DNA sequence DT(E1):DA(F16) DG(E2):DC(F15) DT(E3):DA(F14) DA(E4):DT(F13) 5IU(E5):DA(F12) DG(E6):DC(F11) DT(E7):DA(F10) DA(E8):DT(F9) DT(E9):DA(F8) DA(E10):DT(F7) 5IU(E11):DA(F6) DA(E12):DT(F5) DA(E13):DT(F4) DA(E14):DT(F3) DA(E15):DT(F2) DC(E16):DG(F1) chainA ( 9) ASN69 0 0 0 0 0 0 0 0 0 0 0 7 5 0 0 0 ( 11) VAL71 0 0 0 0 0 0 0 0 0 0 0 0 5 2 0 0 ( 39) PHE99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 8 ( 54) LEU114 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 ( 56) PHE116 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 ( 62) VAL122 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3 0 ( 64) THR124 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 ( 99) ASN159 0 0 0 0 0 0 0 0 0 0 0 5 5 0 0 0 (101) VAL161 0 0 0 0 0 0 0 0 0 0 2 5 0 0 0 0 (130) PHE190 0 0 0 0 0 0 0 0 9 26 0 0 0 0 0 0 (131) PRO191 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 (145) LEU205 0 0 0 0 0 0 0 0 0 3 2 0 0 0 0 0 (147) PHE207 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 (153) VAL213 0 0 0 0 0 0 0 0 0 1 6 0 0 0 0 0 (155) THR215 0 0 0 0 0 0 0 0 0 0 2 9 0 0 0 0 chainC prot.sequence sgivptlqNiVatvtlgcrldlktvalharnaeynpkrFaavimrirepkttaLiFasgkmVvTgakseddsklasrkyariiqkigfaakftdfkiqNiVgscdvkfpirleglafshgtfssyepelFPgliyrmvkpkivlLiFvsgkiVlTgakqreeiyqafeaiypvlsefrkm/dylienlmLcLydkvtrtkarwkcslkdgvvtinrndyTfqkaqveaewv >1njw_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=GUANINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE organism=Geobacillus stearothermophilus DNA sequence DT(C4):DG(B29) DC(C5):DG(B28) DG(C6):DC(B27) DC(C7):DG(B26) DT(C8):DA(B25) DG(C9):DC(B24) DA(C10):DT(B23) DT(C11):DA(B22) DC(C12):DG(B21) DG(C13):DC(B20) DC(C14):DG(B19) chainA (286) LYS582 0 0 0 6 3 0 0 0 0 0 0 (319) ARG615 7 0 0 0 0 0 0 0 0 0 0 (326) ASN622 0 0 1 0 0 0 0 0 0 0 0 (329) ASN625 0 1 7 2 0 0 0 0 0 0 0 (414) PHE710 8 0 0 0 0 0 0 0 0 0 0 (418) TYR714 35 0 0 0 0 0 0 0 0 0 0 (420) ILE716 4 0 0 0 0 0 0 0 0 0 0 prot.sequence akmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgKlqsTyiegllkvvrpdtkkvhtifnqaltqtgRlsstepNlqNipirleegrkirqafvpsesdwlifaadysqielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnFgivYgIsdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqahlllqvhdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak >1njx_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=THYMINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE organism=Geobacillus stearothermophilus DNA sequence DG(C4):DT(B29) DA(C5):DT(B28) DG(C6):DC(B27) DC(C7):DG(B26) DA(C8):DT(B25) DT(C9):DA(B24) DC(C10):DG(B23) DA(C11):DT(B22) DT(C12):DA(B21) DG(C13):DC(B20) DC(C14):DG(B19) chainA (286) LYS582 0 0 0 6 2 0 0 0 0 0 0 (326) ASN622 0 0 1 0 0 0 0 0 0 0 0 (329) ASN625 0 1 7 2 0 0 0 0 0 0 0 (414) PHE710 11 0 0 0 0 0 0 0 0 0 0 (418) TYR714 36 0 0 0 0 0 0 0 0 0 0 (420) ILE716 3 0 0 0 0 0 0 0 0 0 0 prot.sequence akmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgKlqsTyiegllkvvrpdtkkvhtifnqaltqtgrlsstepNlqNipirleegrkirqafvpsesdwlifaadysqielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnFgivYgIsdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqahlllqvHdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak >1njy_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=THYMINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE organism=Geobacillus stearothermophilus DNA sequence DT(C4):DT(B29) DA(C5):DT(B28) DC(C6):DG(B27) DG(C7):DC(B26) DT(C8):DA(B25) DG(C9):DC(B24) DA(C10):DT(B23) DT(C11):DA(B22) DC(C12):DG(B21) DG(C13):DC(B20) DC(C14):DG(B19) chainA (286) LYS582 0 0 0 5 3 0 0 0 0 0 0 (291) TYR587 0 0 1 0 0 0 0 0 0 0 0 (319) ARG615 7 1 0 0 0 0 0 0 0 0 0 (326) ASN622 0 0 1 0 0 0 0 0 0 0 0 (329) ASN625 0 1 9 2 0 0 0 0 0 0 0 (418) TYR714 45 0 0 0 0 0 0 0 0 0 0 (501) GLN797 3 0 0 0 0 0 0 0 0 0 0 prot.sequence akmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgKlqsTYiegllkvvrpdtkkvhtifnqaltqtgRlsstepNlqNipirleegrkirqafvpsesdwlifaadysqiElrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnfgivYgisdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfaermamNtpiQgsaadiikkamidlnarlkeerlqahlllqvHdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak >1njz_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=CYTOSINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE organism=Geobacillus stearothermophilus DNA sequence DG(B20):DC(C15) DC(B21):DG(C14) DG(B22):DC(C13) DA(B23):DT(C12) DT(B24):DA(C11) DC(B25):DG(C10) DA(B26):DT(C9) DG(B27):DC(C8) DC(B28):DG(C7) DC(B29):DT(C6) chainA (286) LYS582 0 0 0 0 0 2 5 0 0 0 (319) ARG615 0 0 0 0 0 0 0 0 5 5 (326) ASN622 0 0 0 0 0 0 0 1 0 0 (329) ASN625 0 0 0 0 0 0 1 9 0 0 (418) TYR714 0 0 0 0 0 0 0 0 0 48 (501) GLN797 0 0 0 0 0 0 0 0 0 3 (533) HIS829 0 0 0 0 0 0 0 0 2 0 prot.sequence akmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgKlqsTyiegllkvvrpdtkkvhtifnqaltqtgRlsstepNlqNipirleegrkirqafvpsesdwlifaadysqielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnfgivYgisdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfaermamntpiQgsaadiikkamidlnarlkeerlqahlllqvHdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak >1nk0_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=ADENINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE organism=Geobacillus stearothermophilus DNA sequence DG(B19):DC(C14) DC(B20):DG(C13) DG(B21):DC(C12) DA(B22):DT(C11) DT(B23):DA(C10) DC(B24):DG(C9) DA(B25):DT(C8) DG(B26):DC(C7) DC(B27):DG(C6) DA(B28):DT(C5) DA(B29):DG(C4) chainA (286) LYS582 0 0 0 0 0 0 3 6 0 0 0 (319) ARG615 0 0 0 0 0 0 0 0 0 0 4 (326) ASN622 0 0 0 0 0 0 0 0 1 0 0 (329) ASN625 0 0 0 0 0 0 0 2 7 1 0 (333) ARG629 0 0 0 0 0 0 0 0 0 7 4 (414) PHE710 0 0 0 0 0 0 0 0 0 0 6 (418) TYR714 0 0 0 0 0 0 0 0 0 0 40 (420) ILE716 0 0 0 0 0 0 0 0 0 0 3 (501) GLN797 0 0 0 0 0 0 0 0 0 0 1 (533) HIS829 0 0 0 0 0 0 0 0 0 0 2 prot.sequence akmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgKlqsTyiegllkvvrpdtkkvhtifnqaltqtgRlsstepNlqNipiRleegrkirqafvpsesdwlifaadysqielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnFgivYgIsdyglaqNlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfaermamntpiQgsaadiikkamidlnarlkeerlqahlllqvHdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak >1nk3_P:Homeodomain-like; title=VND/NK-2 HOMEODOMAIN/DNA COMPLEX, NMR, MINIMIZED AVERAGE STRUCTURE organism=DROSOPHILA MELANOGASTER DNA sequence DG(A2):DC(B31) DT(A3):DA(B30) DG(A4):DC(B29) DT(A5):DA(B28) DC(A6):DG(B27) DA(A7):DT(B26) DA(A8):DT(B25) DG(A9):DC(B24) DT(A10):DA(B23) DG(A11):DC(B22) DG(A12):DC(B21) DC(A13):DG(B20) DT(A14):DA(B19) chainP ( 4) LYS103 0 0 0 0 4 1 0 0 0 0 0 0 0 ( 6) ARG105 0 0 6 3 6 0 0 0 0 0 0 0 0 ( 48) ILE147 0 0 0 0 0 0 2 0 0 0 0 0 0 ( 51) GLN150 0 0 0 0 0 0 0 0 0 5 2 0 0 ( 52) ASN151 0 0 0 0 0 8 5 0 0 0 0 0 0 ( 55) TYR154 0 0 0 0 0 0 0 0 4 0 0 0 0 prot.sequence kkrKrRvlftkaqtyelerrfrqqrylsaperehlaslirltptqvkIwfQNhrYktkraqne >1nk4_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=GUANINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE organism=Geobacillus stearothermophilus DNA sequence DG(B21):DC(C12) DC(B22):DG(C11) DG(B23):DC(C10) DA(B24):DT(C9) DT(B25):DA(C8) DC(B26):DG(C7) DA(B27):DT(C6) DG(B28):DC(C5) DG(B29):DG(C4) chainA (286) LYS582 0 0 0 0 2 5 0 0 0 (319) ARG615 0 0 0 0 0 0 0 0 4 (329) ASN625 0 0 0 0 0 2 6 1 0 (414) PHE710 0 0 0 0 0 0 0 0 11 (418) TYR714 0 0 0 0 0 0 0 0 30 (420) ILE716 0 0 0 0 0 0 0 0 2 prot.sequence akmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgKlqsTYiegllkvvrpdtkkvhtifnqaltqtgRlsstepNlqNipirleegrkirqafvpsesdwlifaadysqielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnFgivYgIsdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqahlllqvhdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak >1nk5_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=ADENINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITE organism=Geobacillus stearothermophilus DNA sequence DT(C4):DA(B29) DA(C5):DT(B28) DT(C6):DA(B27) DC(C7):DG(B26) DA(C8):DT(B25) DA(C9):DT(B24) DT(C10):DA(B23) DG(C11):DC(B22) DC(C12):DG(B21) DC(C13):DG(B20) DA(C14):DT(B19) DT(C15):DA(B18) DG(C16):DC(B17) chainA (286) LYS582 0 0 0 6 3 0 0 0 0 0 0 0 0 (319) ARG615 7 3 0 0 0 0 0 0 0 0 0 0 0 (329) ASN625 0 1 6 2 0 0 0 0 0 0 0 0 0 (333) ARG629 5 5 0 0 0 0 0 0 0 0 0 0 0 (418) TYR714 49 0 0 0 0 0 0 0 0 0 0 0 0 (501) GLN797 3 1 0 0 0 0 0 0 0 0 0 0 0 prot.sequence akmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgKlqsTyiegllkvvrpdtkkvhtifnqaltqtgRlsstepNlqNipiRleegrkirqafvpsesdwlifaadysqielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnfgivYgisdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfaermamntpiQgsaadiikkamidlnarlkeerlqahlllqvHdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak >1nk6_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=CYTOSINE-CYTOSINE MISMATCH AT THE POLYMERASE ACTIVE SITE organism=Geobacillus stearothermophilus DNA sequence DG(B22):DC(C11) DC(B23):DG(C10) DA(B24):DT(C9) DT(B25):DA(C8) DG(B26):DC(C7) DA(B27):DT(C6) DT(B28):DA(C5) DC(B29):DG(C4) chainA (286) LYS582 0 0 0 3 6 0 0 0 (291) TYR587 0 0 0 0 0 1 0 0 (329) ASN625 0 0 0 0 2 6 1 0 (414) PHE710 0 0 0 0 0 0 0 11 (418) TYR714 0 0 0 0 0 0 0 12 (420) ILE716 0 0 0 0 0 0 0 6 (533) HIS829 0 0 0 0 0 0 2 0 prot.sequence akmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgKlqstYiegllkvvrpdtkkvhtifnqaltqtgrlsstepNlqNipirleegrkirqafvpsesdwlifaadysqielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnFgivYgIsdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfaermamntpiQgsaadiikkamidlnarlkeerlqahlllqvHdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak >1nk7_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=GUANINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITE organism=Geobacillus stearothermophilus DNA sequence DG(B21):DC(C14) DC(B22):DG(C13) DA(B23):DT(C12) DT(B24):DA(C11) DC(B25):DG(C10) DA(B26):DT(C9) DT(B27):DA(C8) DG(B28):DC(C7) DC(B29):DG(C6) chainA (286) LYS582 0 0 0 0 3 3 0 0 0 (291) TYR587 0 0 0 0 0 0 1 0 0 (319) ARG615 0 0 0 0 0 0 0 3 8 (329) ASN625 0 0 0 0 0 1 4 1 0 (418) TYR714 0 0 0 0 0 0 0 0 13 (501) GLN797 0 0 0 0 0 0 0 0 4 (533) HIS829 0 0 0 0 0 0 0 1 0 prot.sequence akmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgKlqsTYiegllkvvrpdtkkvhtifnqaltqtgRlsstepNlqNipirleegrkirqafvpsesdwlifaadysqielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnfgivYgisdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfaermamntpiQgsaadiikkamidlnarlkeerlqahlllqvHdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak >1nk8_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE- THYMINE MISMATCH AFTER A SINGLE ROUND OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP. organism=Geobacillus stearothermophilus DNA sequence DG(B19):DC(C14) DC(B20):DG(C13) DG(B21):DC(C12) DA(B22):DT(C11) DT(B23):DA(C10) DC(B24):DG(C9) DA(B25):DT(C8) DG(B26):DC(C7) DC(B27):DG(C6) DG(B28):DT(C5) DC(B29):DG(C4) chainA (286) LYS582 0 0 0 0 0 0 3 6 0 0 0 (319) ARG615 0 0 0 0 0 0 0 0 0 0 6 (326) ASN622 0 0 0 0 0 0 0 1 1 0 0 (329) ASN625 0 0 0 0 0 0 0 2 7 0 0 (414) PHE710 0 0 0 0 0 0 0 0 0 0 5 (418) TYR714 0 0 0 0 0 0 0 0 0 0 38 (420) ILE716 0 0 0 0 0 0 0 0 0 0 3 (533) HIS829 0 0 0 0 0 0 0 0 0 1 0 prot.sequence akmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgKlqsTyiegllkvvrpdtkkvhtifnqaltqtgRlsstepNlqNipirleegrkirqafvpsesdwlifaadysqielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnFgivYgIsdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfaermamntpiQgsaadiikkamidlnarlkeerlqahlllqvHdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak >1nk9_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE- THYMINE MISMATCH AFTER TWO ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP AND DGTP. organism=Geobacillus stearothermophilus DNA sequence DC(C4):DG(B29) DG(C5):DC(B28) DT(C6):DG(B27) DG(C7):DC(B26) DC(C8):DG(B25) DT(C9):DA(B24) DG(C10):DC(B23) DA(C11):DT(B22) DT(C12):DA(B21) DC(C13):DG(B20) DG(C14):DC(B19) DC(C15):DG(B18) chainA (286) LYS582 0 0 0 6 5 0 0 0 0 0 0 0 (319) ARG615 11 1 0 0 0 0 0 0 0 0 0 0 (329) ASN625 0 1 8 3 0 0 0 0 0 0 0 0 (333) ARG629 4 7 0 0 0 0 0 0 0 0 0 0 (418) TYR714 26 0 0 0 0 0 0 0 0 0 0 0 (501) GLN797 2 0 0 0 0 0 0 0 0 0 0 0 prot.sequence akmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgKlqsTYiegllkvvrpdtkkvhtifnqaltqtgRlsstepNlqNipiRleegrkirqafvpsesdwlifaadysqielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnfgivYgisdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfaermamntpiQgsaadiikkamidlnarlkeerlqahlllqvHdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak >1nkb_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE- THYMINE MISMATCH AFTER THREE ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP, DGTP, AND DTTP. organism=Geobacillus stearothermophilus DNA sequence DA(C4):DT(B29) DC(C5):DG(B28) DG(C6):DC(B27) DT(C7):DG(B26) DG(C8):DC(B25) DC(C9):DG(B24) DT(C10):DA(B23) DG(C11):DC(B22) DA(C12):DT(B21) DT(C13):DA(B20) DC(C14):DG(B19) DG(C15):DC(B18) DC(C16):DG(B17) chainA (286) LYS582 0 0 0 6 1 0 0 0 0 0 0 0 0 (291) TYR587 0 0 1 0 0 0 0 0 0 0 0 0 0 (319) ARG615 8 3 0 0 0 0 0 0 0 0 0 0 0 (326) ASN622 0 0 1 3 0 0 0 0 0 0 0 0 0 (329) ASN625 0 1 7 2 0 0 0 0 0 0 0 0 0 (414) PHE710 1 0 0 0 0 0 0 0 0 0 0 0 0 (418) TYR714 41 0 0 0 0 0 0 0 0 0 0 0 0 (501) GLN797 2 0 0 0 0 0 0 0 0 0 0 0 0 (533) HIS829 1 1 0 0 0 0 0 0 0 0 0 0 0 prot.sequence akmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgKlqsTYiegllkvvrpdtkkvhtifnqaltqtgRlsstepNlqNipirleegrkirqafvpsesdwlifaadysqielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnFgivYgisdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfaermamntpiQgsaadiikkamidlnarlkeerlqahlllqvHdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak >1nkc_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE- THYMINE MISMATCH AFTER FIVE ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP, DGTP, DTTP, AND DATP. organism=Geobacillus stearothermophilus DNA sequence DG(C27):DC(B16) DT(C28):DA(B15) DA(C29):DT(B14) DC(C30):DG(B13) DG(C31):DC(B12) DT(C32):DG(B11) DG(C33):DC(B10) DC(C34):DG(B9) DT(C35):DA(B8) DG(C36):DC(B7) DA(C37):DT(B6) DT(C38):DA(B5) DC(C39):DG(B4) DG(C40):DC(B3) DC(C41):DG(B2) chainA (286) LYS582 0 0 0 6 2 0 0 0 0 0 0 0 0 0 0 (291) TYR587 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 (319) ARG615 8 2 0 0 0 0 0 0 0 0 0 0 0 0 0 (329) ASN625 0 1 4 2 0 0 0 0 0 0 0 0 0 0 0 (418) TYR714 53 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (501) GLN797 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence akmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgKlqsTYiegllkvvrpdtkkvhtifnqaltqtgRlsstepNlqNipirleegrkirqafvpsesdwlifaadysqielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnfgivYgisdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfaermamntpiQgsaadiikkamidlnarlkeerlqahlllqvHdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak >1nke_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A CYTOSINE- THYMINE MISMATCH AFTER A SINGLE ROUND OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP. organism=Geobacillus stearothermophilus DNA sequence DG(B19):DC(C16) DC(B20):DG(C15) DG(B21):DC(C14) DA(B22):DT(C13) DT(B23):DA(C12) DC(B24):DG(C11) DA(B25):DT(C10) DG(B26):DC(C9) DC(B27):DG(C8) DC(B28):DT(C7) DC(B29):DG(C6) chainA (286) LYS582 0 0 0 0 0 0 3 6 0 0 0 (291) TYR587 0 0 0 0 0 0 0 0 1 0 0 (319) ARG615 0 0 0 0 0 0 0 0 0 1 9 (326) ASN622 0 0 0 0 0 0 0 0 1 0 0 (329) ASN625 0 0 0 0 0 0 0 2 7 1 0 (418) TYR714 0 0 0 0 0 0 0 0 0 0 50 (501) GLN797 0 0 0 0 0 0 0 0 0 0 4 prot.sequence akmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgKlqsTYiegllkvvrpdtkkvhtifnqaltqtgRlsstepNlqNipirleegrkirqafvpsesdwlifaadysqielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnfgivYgisdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfaermamntpiQgsaadiikkamidlnarlkeerlqahlllqvHdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak >1nkp_A:HLH,_helix-loop-helix_DNA-binding_domain; title=CRYSTAL STRUCTURE OF MYC-MAX RECOGNIZING DNA organism=HOMO SAPIENS DNA sequence DG(F102):DC(G319) DA(F103):DT(G318) DG(F104):DC(G317) DT(F105):DA(G316) DA(F106):DT(G315) DG(F107):DC(G314) DC(F108):DG(G313) DA(F109):DT(G312) DC(F110):DG(G311) DG(F111):DC(G310) DT(F112):DA(G309) DG(F113):DC(G308) DC(F114):DG(G307) DT(F115):DA(G306) DA(F116):DT(G305) DC(F117):DG(G304) DT(F118):DA(G303) DC(F119):DG(G302) chainA ( 6) LYS902 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 10) HIS906 0 0 0 0 0 5 11 16 0 0 0 0 0 0 0 0 0 0 ( 11) ASN907 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 ( 14) GLU910 0 0 0 0 0 2 9 10 0 0 0 0 0 0 0 0 0 0 ( 17) ARG913 0 0 0 0 0 2 8 0 0 0 0 0 0 0 0 0 0 0 ( 18) ARG914 0 0 0 0 0 0 0 2 10 13 0 0 0 0 0 0 0 0 prot.sequence ghmnvKrrtHNvlErqRRnelkrsffalrdqipelennekapkvvilkkatayilsvqaeeqkliseedllrkrreqlkhkleqlggc >1nkp_AB: title=CRYSTAL STRUCTURE OF MYC-MAX RECOGNIZING DNA organism=HOMO SAPIENS DNA sequence DG(F102):DC(G319) DA(F103):DT(G318) DG(F104):DC(G317) DT(F105):DA(G316) DA(F106):DT(G315) DG(F107):DC(G314) DC(F108):DG(G313) DA(F109):DT(G312) DC(F110):DG(G311) DG(F111):DC(G310) DT(F112):DA(G309) DG(F113):DC(G308) DC(F114):DG(G307) DT(F115):DA(G306) DA(F116):DT(G305) DC(F117):DG(G304) DT(F118):DA(G303) DC(F119):DG(G302) chainA ( 6) LYS902 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 10) HIS906 0 0 0 0 0 5 11 16 0 0 0 0 0 0 0 0 0 0 ( 11) ASN907 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 ( 14) GLU910 0 0 0 0 0 2 9 10 0 0 0 0 0 0 0 0 0 0 ( 17) ARG913 0 0 0 0 0 2 8 0 0 0 0 0 0 0 0 0 0 0 ( 18) ARG914 0 0 0 0 0 0 0 2 10 13 0 0 0 0 0 0 0 0 chainB ( 6) HIS207 0 0 0 0 0 0 0 0 0 0 9 10 4 0 0 0 0 0 ( 7) ASN208 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 ( 10) GLU211 0 0 0 0 0 0 0 0 0 0 10 9 1 0 0 0 0 0 ( 13) ARG214 0 0 0 0 0 0 0 0 0 0 0 5 5 0 0 0 0 0 ( 14) ARG215 0 0 0 0 0 0 0 0 13 2 0 0 0 0 0 0 0 0 prot.sequence ghmnvKrrtHNvlErqRRnelkrsffalrdqipelennekapkvvilkkatayilsvqaeeqkliseedllrkrreqlkhkleqlggc/dkrahHNalErkRRdhikdsfhslrdsvpslqgekasraqildkateyiqymrrknhthqqdiddlkrqnalleqqvralggc >1nkp_DE: title=CRYSTAL STRUCTURE OF MYC-MAX RECOGNIZING DNA organism=HOMO SAPIENS DNA sequence DG(H602):DC(J819) DA(H603):DT(J818) DG(H604):DC(J817) DT(H605):DA(J816) DA(H606):DT(J815) DG(H607):DC(J814) DC(H608):DG(J813) DA(H609):DT(J812) DC(H610):DG(J811) DG(H611):DC(J810) DT(H612):DA(J809) DG(H613):DC(J808) DC(H614):DG(J807) DT(H615):DA(J806) DA(H616):DT(J805) DC(H617):DG(J804) DT(H618):DA(J803) DC(H619):DG(J802) chainD ( 8) HIS506 0 0 0 0 0 0 0 0 0 0 14 12 3 0 0 0 0 0 ( 9) ASN507 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 ( 12) GLU510 0 0 0 0 0 0 0 0 0 1 11 8 1 0 0 0 0 0 ( 15) ARG513 0 0 0 0 0 0 0 0 0 0 0 9 2 0 0 0 0 0 ( 16) ARG514 0 0 0 0 0 0 0 0 12 8 0 0 0 0 0 0 0 0 chainE ( 4) HIS707 0 0 0 0 0 4 11 9 0 0 0 0 0 0 0 0 0 0 ( 5) ASN708 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 ( 8) GLU711 0 0 0 0 0 1 10 10 0 0 0 0 0 0 0 0 0 0 ( 11) ARG714 0 0 0 0 0 4 6 0 0 0 0 0 0 0 0 0 0 0 ( 12) ARG715 0 0 0 0 0 0 0 2 9 13 0 0 0 0 0 0 0 0 prot.sequence mnvkrrtHNvlErqRRnelkrsffalrdqipelennekapkvvilkkatayilsvqaeeqkliseedllrkrreqlkhkleql/rahHNalErkRRdhikdsfhslrdsvpslqgekasraqildkateyiqymrrknhthqqdiddlkrqnalleqqvralggc >1nlw_A:HLH,_helix-loop-helix_DNA-binding_domain; title=CRYSTAL STRUCTURE OF MAD-MAX RECOGNIZING DNA organism=HOMO SAPIENS DNA sequence DG(F102):DC(G319) DA(F103):DT(G318) DG(F104):DC(G317) DT(F105):DA(G316) DA(F106):DT(G315) DG(F107):DC(G314) DC(F108):DG(G313) DA(F109):DT(G312) DC(F110):DG(G311) DG(F111):DC(G310) DT(F112):DA(G309) DG(F113):DC(G308) DC(F114):DG(G307) DT(F115):DA(G306) DA(F116):DT(G305) DC(F117):DG(G304) DT(F118):DA(G303) DC(F119):DG(G302) chainA ( 5) HIS6 0 0 0 0 0 0 0 0 0 0 7 8 5 0 0 0 0 0 ( 6) ASN7 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 ( 9) GLU10 0 0 0 0 0 0 0 0 0 0 11 10 1 0 0 0 0 0 ( 12) ARG13 0 0 0 0 0 0 0 0 0 0 0 6 4 0 0 0 0 0 ( 13) ARG14 0 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 0 prot.sequence srstHNemEknRRahlrlsleklkglvplgpdssrhttlslltkaklhikkledsdrkavhqidqlqreqrhlkrqlek >1nlw_AB: title=CRYSTAL STRUCTURE OF MAD-MAX RECOGNIZING DNA organism=HOMO SAPIENS DNA sequence DG(G302):DC(F119) DA(G303):DT(F118) DG(G304):DC(F117) DT(G305):DA(F116) DA(G306):DT(F115) DG(G307):DC(F114) DC(G308):DG(F113) DA(G309):DT(F112) DC(G310):DG(F111) DG(G311):DC(F110) DT(G312):DA(F109) DG(G313):DC(F108) DC(G314):DG(F107) DT(G315):DA(F106) DA(G316):DT(F105) DC(G317):DG(F104) DT(G318):DA(F103) DC(G319):DG(F102) chainA ( 5) HIS6 0 0 0 0 0 5 8 7 0 0 0 0 0 0 0 0 0 0 ( 6) ASN7 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 ( 9) GLU10 0 0 0 0 0 1 10 11 0 0 0 0 0 0 0 0 0 0 ( 12) ARG13 0 0 0 0 0 4 6 0 0 0 0 0 0 0 0 0 0 0 ( 13) ARG14 0 0 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 chainB ( 1) LYS203 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 ( 5) HIS207 0 0 0 0 0 0 0 0 0 0 7 11 4 0 0 0 0 0 ( 6) ASN208 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 ( 9) GLU211 0 0 0 0 0 0 0 0 0 0 8 10 1 0 0 0 0 0 ( 12) ARG214 0 0 0 0 0 0 0 0 0 0 0 7 7 0 0 0 0 0 ( 13) ARG215 0 0 0 0 0 0 0 0 14 9 2 0 0 0 0 0 0 0 prot.sequence srstHNemEknRRahlrlsleklkglvplgpdssrhttlslltkaklhikkledsdrkavhqidqlqreqrhlkrqlek/KrahHNalErkRRdhikdsfhslrdsvpslqgekasraqildkateyiqymrrknhthqqdiddlkrqnalleqqv >1nlw_DE: title=CRYSTAL STRUCTURE OF MAD-MAX RECOGNIZING DNA organism=HOMO SAPIENS DNA sequence DG(H602):DC(J819) DA(H603):DT(J818) DG(H604):DC(J817) DT(H605):DA(J816) DA(H606):DT(J815) DG(H607):DC(J814) DC(H608):DG(J813) DA(H609):DT(J812) DC(H610):DG(J811) DG(H611):DC(J810) DT(H612):DA(J809) DG(H613):DC(J808) DC(H614):DG(J807) DT(H615):DA(J806) DA(H616):DT(J805) DC(H617):DG(J804) DT(H618):DA(J803) DC(H619):DG(J802) chainD ( 5) HIS506 0 0 0 0 0 0 0 0 0 0 8 16 6 0 0 0 0 0 ( 6) ASN507 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 ( 8) MET509 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 ( 9) GLU510 0 0 0 0 0 0 0 0 0 0 11 9 1 0 0 0 0 0 ( 12) ARG513 0 0 0 0 0 0 0 0 0 0 0 4 4 0 0 0 0 0 ( 13) ARG514 0 0 0 0 0 0 0 0 9 3 0 0 0 0 0 0 0 0 chainE ( 3) HIS707 0 0 0 0 0 6 9 4 0 0 0 0 0 0 0 0 0 0 ( 4) ASN708 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 ( 7) GLU711 0 0 0 0 0 1 10 10 1 0 0 0 0 0 0 0 0 0 ( 10) ARG714 0 0 0 0 0 2 8 0 0 0 0 0 0 0 0 0 0 0 ( 11) ARG715 0 0 0 0 0 0 0 0 4 10 0 0 0 0 0 0 0 0 prot.sequence srstHNeMEknRRahlrlsleklkglvplgpdssrhttlslltkaklhikkledsdrkavhqidqlqreqrhlkrql/ahHNalErkRRdhikdsfhslrdsvpslqgekasraqildkateyiqymrrknhthqqdiddlkrqnalleqqv >1nne_AB: title=CRYSTAL STRUCTURE OF THE MUTS-ADPBEF3-DNA COMPLEX organism=THERMUS AQUATICUS DNA sequence DG(D1952):DC(C1923) DA(D1953):DT(C1922) DC(D1954):DG(C1921) DG(D1955):DC(C1920) DA(D1956):DT(C1919) DG(D1957):DC(C1918) DC(D1958):DG(C1917) DC(D1959):DG(C1916) DG(D1960):DC(C1915) DC(D1961):DG(C1914) DC(D1962):DG(C1912) DG(D1963):DC(C1911) DC(D1964):DG(C1910) DT(D1965):DA(C1909) DA(D1966):DT(C1908) DG(D1967):DC(C1907) DC(D1968):DG(C1906) DG(D1969):DC(C1905) DT(D1970):DA(C1904) DC(D1971):DG(C1903) DG(D1972):DC(C1902) chainA ( 39) PHE39 0 0 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 chainB (466) ASP1472 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 prot.sequence megmlkgegpgplppllqqyvelrdqypdylllfqvgdFyecfgedaerlaralglvlthktskdfttpmagiplrafeayaerllkmgfrlavadqvepaeeaeglvrrevtqlltpgtllqesllpreanylaaiatgdgwglafldvstgefkgtvlksksalydelfrhrpaevllapellengafldefrkrfpvmlseapfepegegplalrrargallayaqrtqggalslqpfrfydpgafmrlpeatlralevfeplrgqdtlfsvldetrtapgrrllqswlrhplldrgplearldrvegfvregalregvrrllyrladlerlatrlelgraspkdlgalrrslqilpelrallgeevglpdlsplkeeleaalvedpplkvseggliregydpdldalraahregvayfleleererertgiptlkvgynavfgyylevtrpyyervpkeyrpvqtlkdrqrytlpemkekerevyrlealirrreeevflevrerakrqaealreaarilaeldvyaalaevavrygyvrprfgdrlqiragrhpvverrtefvpndlemahelvlitgpnmagkstflrqtaliallaqvgsfvpaeeahlplfdgiytrigagkstfmvemeevalilkeatenslvlldevgrgtssldgvaiatavaealherraytlfathyfeltalglprlknlhvaareeagglvfyhqvlpgpasksygvevaamaglpkevvararallqamaar/megmlkgegpgplppllqqyvelrdqypdylllfqvgdfyecfgedaerlaralglvlthktskdfttpmagiplrafeayaerllkmgfrlavadqveplvrrevtqlltpgtllqesllpreanylaaiatgdgwglafldvstgefkgtvlksksalydelfrhrpaevllapellengafldefrkrfpvmlseapfepegegplalrrargallayaqrtqggalslqpfrfydpgafmrlpeatlralevfeplrgqdtlfsvldetrtapgrrllqswlrhplldrgplearldrvegfvregalregvrrllyrladlerlatrlelgraspkdlgalrrslqilpelrallgeevglpdlsplkeeleaalvedpplkvseggliregydpdldalraahregvayfleleererertgiptlkvgynavfgyylevtrpyyervpkeyrpvqtlkDrqrytlpemkekerevyrlealirrreeevflevrerakrqaealreaarilaeldvyaalaevavrygyvrprfgdrlqiragrhpvverrtefvpndlemahelvlitgpnmagkstflrqtaliallaqvgsfvpaeeahlplfdgiytrigasddlaggkstfmvemeevalilkeatenslvlldevgrgtssldgvaiatavaealherraytlfathyfeltalglprlknlhvaareeagglvfyhqvlpgpasksygvevaamaglpkevvararallqamaar >1nne_B:DNA_repair_protein_MutS,_domain_III;P-loop_containing_nucleoside_triphosphate_hydrolases; title=CRYSTAL STRUCTURE OF THE MUTS-ADPBEF3-DNA COMPLEX organism=? DNA sequence DC(C1902):DG(D1972) DG(C1903):DC(D1971) DA(C1904):DT(D1970) DC(C1905):DG(D1969) DG(C1906):DC(D1968) DC(C1907):DG(D1967) DT(C1908):DA(D1966) DA(C1909):DT(D1965) DG(C1910):DC(D1964) DC(C1911):DG(D1963) DG(C1912):DC(D1962) DG(C1914):DC(D1961) DC(C1915):DG(D1960) DG(C1916):DC(D1959) DG(C1917):DC(D1958) DC(C1918):DG(D1957) DT(C1919):DA(D1956) DC(C1920):DG(D1955) DG(C1921):DC(D1954) DT(C1922):DA(D1953) DC(C1923):DG(D1952) chainB (466) ASP1472 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence megmlkgegpgplppllqqyvelrdqypdylllfqvgdfyecfgedaerlaralglvlthktskdfttpmagiplrafeayaerllkmgfrlavadqveplvrrevtqlltpgtllqesllpreanylaaiatgdgwglafldvstgefkgtvlksksalydelfrhrpaevllapellengafldefrkrfpvmlseapfepegegplalrrargallayaqrtqggalslqpfrfydpgafmrlpeatlralevfeplrgqdtlfsvldetrtapgrrllqswlrhplldrgplearldrvegfvregalregvrrllyrladlerlatrlelgraspkdlgalrrslqilpelrallgeevglpdlsplkeeleaalvedpplkvseggliregydpdldalraahregvayfleleererertgiptlkvgynavfgyylevtrpyyervpkeyrpvqtlkDrqrytlpemkekerevyrlealirrreeevflevrerakrqaealreaarilaeldvyaalaevavrygyvrprfgdrlqiragrhpvverrtefvpndlemahelvlitgpnmagkstflrqtaliallaqvgsfvpaeeahlplfdgiytrigasddlaggkstfmvemeevalilkeatenslvlldevgrgtssldgvaiatavaealherraytlfathyfeltalglprlknlhvaareeagglvfyhqvlpgpasksygvevaamaglpkevvararallqamaar >1nnj_A:N-terminal_domain_of_MutM-like_DNA_repair_proteins;S13-like_H2TH_domain;Glucocorticoid_receptor-like_DNA-binding_domain; title=CRYSTAL STRUCTURE COMPLEX BETWEEN THE LACTOCOCCUS LACTIS FPG AND AN ABASIC SITE CONTAINING DNA organism=Lactococcus lactis DNA sequence DC(E16):DG(D14) DG(E17):DC(D13) DA(E18):DT(D12) DG(E19):DC(D11) DA(E20):DT(D10) DA(E21):DT(D9) DA(E22):DT(D8) DC(E23):PDI(D7) DA(E24):DT(D6) DA(E25):DT(D5) DA(E26):DT(D4) DG(E27):DC(D3) DA(E28):DT(D2) chainA ( 2) GLU2 0 0 0 0 0 0 0 6 0 0 0 0 0 ( 74) ARG74 0 0 0 0 0 4 12 0 0 0 0 0 0 ( 75) MET75 0 0 0 0 0 0 26 5 0 0 0 0 0 (109) ARG109 0 0 0 0 0 0 2 15 33 0 0 0 0 (111) PHE111 0 0 0 0 0 0 74 11 0 0 0 0 0 (171) ASN171 0 0 0 0 0 0 0 5 0 0 0 0 0 (172) ILE172 0 0 0 0 0 0 0 3 0 0 0 0 0 (234) TYR238 0 0 0 0 0 0 0 3 0 0 0 0 0 (256) ARG260 0 0 0 0 0 1 10 2 0 0 0 0 0 prot.sequence gelpevetvrrelekrivgqkiisieatyprmvltgfeqlkkeltgktiqgisrrgkylifeigddfrlishlRMEgkyrlatldaprekhdhltmkfadgqliyadvRkFgtwelistdqvlpyflkkkigpeptyedfdeklfreklrkstkkikpylleqtlvaglgniyvdevlwlakihpeketnqliessihllhdsiieilqkaiklggssialgstgkmqnelqvygktgekcsrcgaeiqkikvagRgthfcpvcqqk >1nvp_AC: title=HUMAN TFIIA/TBP/DNA COMPLEX organism=HOMO SAPIENS DNA sequence DC(F1):DG(E17) DC(F2):DG(E16) DT(F3):DA(E15) DT(F4):DA(E14) DT(F5):DA(E13) DT(F6):DA(E12) DA(F7):DT(E11) DT(F8):DA(E10) DA(F9):DT(E9) DG(F10):DC(E8) DC(F11):DG(E7) DC(F12):DG(E6) DC(F13):DG(E5) DC(F14):DG(E4) DC(F15):DG(E3) DC(F16):DG(E2) DC(F17):DG(E1) chainA ( 9) ASN167 0 0 0 0 5 8 0 0 0 0 0 0 0 0 0 0 0 ( 11) VAL169 0 0 0 2 4 0 0 0 0 0 0 0 0 0 0 0 0 ( 39) PHE197 0 6 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 54) LEU212 0 0 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 56) PHE214 0 2 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 62) VAL220 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 64) THR222 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 99) ASN257 0 0 0 0 6 5 0 0 0 0 0 0 0 0 0 0 0 (101) VAL259 0 0 0 0 0 5 2 0 0 0 0 0 0 0 0 0 0 (130) PHE288 0 0 0 0 0 0 0 26 9 0 0 0 0 0 0 0 0 (131) PRO289 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 (145) LEU303 0 0 0 0 0 0 2 3 0 0 0 0 0 0 0 0 0 (147) PHE305 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 (153) VAL311 0 0 0 0 0 0 6 1 0 0 0 0 0 0 0 0 0 (155) THR313 0 0 0 0 0 7 3 0 0 0 0 0 0 0 0 0 0 chainC prot.sequence sgivpqlqNiVstvnlgckldlktialrarnaeynpkrFaavimrireprttaLiFssgkmVcTgakseeqsrlaarkyarvvqklgfpakfldfkiqNmVgscdvkfpirleglvlthqqfssyepelFPgliyrmikprivlLiFvsgkvVlTgakvraeiyeafeniypilkgfrkt/dtenvvvcQyDkihrsknkwkfhlkdgimnlngrdyifSkaigdaew >1nwq_A:Leucine_zipper_domain; title=CRYSTAL STRUCTURE OF C/EBPALPHA-DNA COMPLEX organism=Rattus norvegicus DNA sequence DA(D-11):DT(B11) DA(D-10):DT(B10) DC(D-9):DG(B9) DT(D-8):DA(B8) DG(D-7):DC(B7) DG(D-6):DC(B6) DA(D-5):DT(B5) DT(D-4):DA(B4) DT(D-3):DA(B3) DG(D-2):DC(B2) DC(D-1):DG(B1) DG(D1):DC(B-1) DC(D2):DG(B-2) DA(D3):DT(B-3) DA(D4):DT(B-4) DT(D5):DA(B-5) DA(D6):DT(B-6) DG(D7):DC(B-7) DG(D8):DC(B-8) DA(D9):DT(B-9) chainA ( 9) ARG289 0 0 0 0 0 0 0 0 0 0 0 0 5 5 0 0 0 0 0 0 ( 12) ASN292 0 0 0 0 0 0 0 0 0 0 0 0 0 5 3 1 0 0 0 0 ( 13) ASN293 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 ( 15) ALA295 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 ( 16) VAL296 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 0 0 0 0 ( 20) ARG300 0 0 0 0 0 0 0 0 0 0 4 11 4 0 0 0 0 0 0 0 prot.sequence nsneyrvrRerNNiAVrksRdkakqrnvetqqkvleltsdndrlrkrveqlsreldtlrg >1nwq_AC:Leucine_zipper_domain; title=CRYSTAL STRUCTURE OF C/EBPALPHA-DNA COMPLEX organism=Rattus norvegicus DNA sequence DA(D-11):DT(B11) DA(D-10):DT(B10) DC(D-9):DG(B9) DT(D-8):DA(B8) DG(D-7):DC(B7) DG(D-6):DC(B6) DA(D-5):DT(B5) DT(D-4):DA(B4) DT(D-3):DA(B3) DG(D-2):DC(B2) DC(D-1):DG(B1) DG(D1):DC(B-1) DC(D2):DG(B-2) DA(D3):DT(B-3) DA(D4):DT(B-4) DT(D5):DA(B-5) DA(D6):DT(B-6) DG(D7):DC(B-7) DG(D8):DC(B-8) DA(D9):DT(B-9) chainA ( 9) ARG289 0 0 0 0 0 0 0 0 0 0 0 0 5 5 0 0 0 0 0 0 ( 12) ASN292 0 0 0 0 0 0 0 0 0 0 0 0 0 5 3 1 0 0 0 0 ( 13) ASN293 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 ( 15) ALA295 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 ( 16) VAL296 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 0 0 0 0 ( 20) ARG300 0 0 0 0 0 0 0 0 0 0 4 11 4 0 0 0 0 0 0 0 chainC ( 9) ARG289 0 0 0 0 0 0 0 0 6 5 0 0 0 0 0 0 0 0 0 0 ( 12) ASN292 0 0 0 0 0 0 2 8 6 0 0 0 0 0 0 0 0 0 0 0 ( 15) ALA295 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 ( 16) VAL296 0 0 0 0 0 0 0 4 5 1 0 0 0 0 0 0 0 0 0 0 ( 19) SER299 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 ( 20) ARG300 0 0 0 0 0 0 0 0 6 8 12 3 0 0 0 0 0 0 0 0 prot.sequence nsneyrvrRerNNiAVrksRdkakqrnvetqqkvleltsdndrlrkrveqlsreldtlrg/nsneyrvrRerNniAVrkSRdkakqrnvetqqkvleltsdndrlrkrveqlsreldtlrg >1nzb_AB:DNA_breaking-rejoining_enzymes;lambda_integrase-like,_N-terminal_domain; title=CRYSTAL STRUCTURE OF WILD TYPE CRE RECOMBINASE-LOXP SYNAPSE organism=Enterobacteria phage P1 DNA sequence DG(C101):DC(D136) DA(C102):DT(D135) DT(C103):DA(D134) DA(C104):DT(D133) DA(C105):DT(D132) DC(C106):DG(D131) UMP(C107):DA(D130) DT(C108):DA(D129) DC(C109):DG(D128) DG(C110):DC(D127) DT(C111):DA(D126) DA(C112):DT(D125) DT(C113):DA(D124) DA(C114):DT(D123) DA(C115):DT(D122) DT(C116):DA(D121) DG(C117):DC(D120) DT(C118):DA(D119) DA(C119):DT(D118) DT(C120):DA(D117) DG(C121):DC(D116) DC(C122):DG(D115) DT(C123):DA(D114) DA(C124):DT(D113) DT(C125):DA(D112) DA(C126):DT(D111) DC(C127):DG(D110) DG(C128):DC(D109) DA(C129):DT(D108) DA(C130):DT(D107) DG(C131):DC(D106) DT(C132):DA(D105) DT(C133):DA(D104) DA(C134):DT(D103) DT(C135):DA(D102) DC(C136):DG(D101) chainA ( 31) HIS40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 5 0 0 0 0 0 0 0 0 0 0 0 ( 32) THR41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 35) MET44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 3 2 0 0 0 0 0 0 0 0 0 0 ( 38) SER47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 ( 77) LYS86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 12 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 78) THR87 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 ( 81) GLN90 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 5 5 0 0 0 0 0 0 0 0 0 0 0 0 (232) ARG241 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 (235) LYS244 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 8 1 (248) SER257 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 (250) ARG259 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 16 10 1 0 0 0 0 0 0 (253) GLU262 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 3 0 0 0 0 0 0 0 0 0 (273) ARG282 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 9 5 0 0 0 0 0 0 0 0 0 0 (308) ASN317 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 21) HIS40 0 0 0 0 0 0 0 0 0 0 0 7 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 22) THR41 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 24) LYS43 0 0 0 0 0 0 0 0 0 0 7 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) MET44 0 0 0 0 0 0 0 0 0 0 5 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) SER47 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 67) LYS86 0 0 0 0 0 0 0 0 0 0 0 0 0 8 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 68) THR87 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 71) GLN90 0 0 0 0 0 0 0 0 0 0 0 0 7 8 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 75) GLN94 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (182) LYS201 0 0 0 0 0 0 0 0 0 0 0 0 0 3 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (222) ARG241 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (225) LYS244 0 7 10 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (238) SER257 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (240) ARG259 0 0 0 0 0 0 0 11 16 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (243) GLU262 0 0 0 0 0 0 0 0 0 4 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (263) ARG282 0 0 0 0 0 0 0 0 0 0 5 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (298) ASN317 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (300) ASN319 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence nlpalpvdatsdevrknlmdmfrdrqafseHTwkMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgqlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmlihigrtktlvstagvekalslgvtklverwisvsgvaddpnnylfcRvrKngvaapsatsqlStRalEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtNvnivmnyirnldsetgamvrlled/sdevrknlmdmfrdrqafseHTwKMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmlihigrtKtlvstagvekalslgvtklverwisvsgvaddpnnylfcRvrKngvaapsatsqlStRalEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtNvNivmnyirnldsetgamvrlled >1nzb_B:DNA_breaking-rejoining_enzymes;lambda_integrase-like,_N-terminal_domain; title=CRYSTAL STRUCTURE OF WILD TYPE CRE RECOMBINASE-LOXP SYNAPSE organism=Enterobacteria phage P1 DNA sequence DG(C101):DC(D136) DA(C102):DT(D135) DT(C103):DA(D134) DA(C104):DT(D133) DA(C105):DT(D132) DC(C106):DG(D131) UMP(C107):DA(D130) DT(C108):DA(D129) DC(C109):DG(D128) DG(C110):DC(D127) DT(C111):DA(D126) DA(C112):DT(D125) DT(C113):DA(D124) DA(C114):DT(D123) DA(C115):DT(D122) DT(C116):DA(D121) DG(C117):DC(D120) DT(C118):DA(D119) DA(C119):DT(D118) DT(C120):DA(D117) DG(C121):DC(D116) DC(C122):DG(D115) DT(C123):DA(D114) DA(C124):DT(D113) DT(C125):DA(D112) DA(C126):DT(D111) DC(C127):DG(D110) DG(C128):DC(D109) DA(C129):DT(D108) DA(C130):DT(D107) DG(C131):DC(D106) DT(C132):DA(D105) DT(C133):DA(D104) DA(C134):DT(D103) DT(C135):DA(D102) DC(C136):DG(D101) chainB ( 21) HIS40 0 0 0 0 0 0 0 0 0 0 0 7 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 22) THR41 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 24) LYS43 0 0 0 0 0 0 0 0 0 0 7 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) MET44 0 0 0 0 0 0 0 0 0 0 5 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) SER47 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 67) LYS86 0 0 0 0 0 0 0 0 0 0 0 0 0 8 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 68) THR87 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 71) GLN90 0 0 0 0 0 0 0 0 0 0 0 0 7 8 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 75) GLN94 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (182) LYS201 0 0 0 0 0 0 0 0 0 0 0 0 0 3 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (222) ARG241 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (225) LYS244 0 7 10 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (238) SER257 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (240) ARG259 0 0 0 0 0 0 0 11 16 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (243) GLU262 0 0 0 0 0 0 0 0 0 4 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (263) ARG282 0 0 0 0 0 0 0 0 0 0 5 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (298) ASN317 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (300) ASN319 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence sdevrknlmdmfrdrqafseHTwKMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmlihigrtKtlvstagvekalslgvtklverwisvsgvaddpnnylfcRvrKngvaapsatsqlStRalEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtNvNivmnyirnldsetgamvrlled >1o3q_A:cAMP-binding_domain-like;"Winged_helix"_DNA-binding_domain; title=PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES organism=Escherichia coli DNA sequence DA(B-2):DT(C-2) DA(B-1):DT(C-1) DA(B1):DT(C1) DA(B2):DT(C2) DA(B3):DT(C3) DT(B4):DA(C4) DG(B5):DC(C5) DT(B6):DA(C6) DG(B7):DC(C7) DA(B8):DT(C8) DT(B9):DA(C9) chainA (172) SER179 0 0 0 0 0 0 0 0 0 2 0 (173) ARG180 0 0 0 0 0 9 13 6 0 0 0 (174) GLU181 0 0 0 0 0 0 0 3 6 8 0 (175) THR182 0 0 0 0 0 0 0 0 0 0 1 (178) ARG185 0 0 0 0 0 0 0 0 4 7 1 prot.sequence dptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemilsylnqgdfigelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqmarrlqvtsekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrqeigqivgcSRETvgRilkmledqnlisahgktivvyg >1o3r_A:cAMP-binding_domain-like;"Winged_helix"_DNA-binding_domain; title=PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES organism=Escherichia coli DNA sequence DA(B-2):DT(C-2) DA(B-1):DT(C-1) DA(B1):DT(C1) DA(B2):DT(C2) DA(B3):DT(C3) DT(B4):DA(C4) DG(B5):DC(C5) DC(B6):DG(C6) DG(B7):DC(C7) DA(B8):DT(C8) DT(B9):DA(C9) chainA (172) SER179 0 0 0 0 0 0 0 0 0 1 1 (173) ARG180 0 0 0 0 0 12 14 2 0 0 0 (174) GLU181 0 0 0 0 0 0 0 4 9 5 0 (178) ARG185 0 0 0 0 0 0 0 1 7 8 2 (194) LYS201 0 0 1 0 0 0 0 0 0 0 0 prot.sequence dptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemilsylnqgdfigelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqmarrlqvtsekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrqeigqivgcSREtvgRilkmledqnlisahgKtivvyg >1o3s_A:cAMP-binding_domain-like;"Winged_helix"_DNA-binding_domain; title=PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES organism=Escherichia coli DNA sequence DA(B-2):DT(C-2) DA(B-1):DT(C-1) DA(B1):DT(C1) DA(B2):DT(C2) DA(B3):DT(C3) DT(B4):DA(C4) DG(B5):DC(C5) DC(B6):DG(C6) DG(B7):DC(C7) DA(B8):DT(C8) DT(B9):DA(C9) chainA (172) SER179 0 0 0 0 0 0 0 0 0 1 0 (173) ARG180 0 0 0 0 0 3 7 1 0 0 0 (174) ASP181 0 0 0 0 0 0 1 5 3 5 0 (178) ARG185 0 0 0 0 0 0 0 3 8 7 0 prot.sequence dptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemilsylnqgdfigelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqmarrlqvtsekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrqeigqivgcSRDtvgRilkmledqnlisahgktivvyg >1o3t_A:cAMP-binding_domain-like;"Winged_helix"_DNA-binding_domain; title=PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES organism=Escherichia coli DNA sequence DC(C-4):DG(D-4) DG(C-3):DC(D-3) DA(C-2):DT(D-2) DA(C-1):DT(D-1) DA(C1):DT(D1) DA(C2):DT(D2) DA(C3):DT(D3) DT(C4):DA(D4) DG(C5):DC(D5) DC(C6):DG(D6) DG(C7):DC(D7) DA(C8):DT(D8) DT(C9):DA(D9) chainA (162) GLN170 0 0 0 0 0 0 0 1 0 0 0 0 0 (172) ARG180 0 0 0 0 0 0 0 0 0 0 1 0 0 (173) GLU181 0 0 0 0 0 0 0 0 0 0 7 5 0 (177) ARG185 0 0 0 0 0 0 0 0 0 0 4 8 1 prot.sequence ptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemilsylnqgdfigelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqmarrlqvtsekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrQeigqivgcsREtvgRilkmledqnlisahgktivvyg >1o4x_AB: title=TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 AND SOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT organism=HOMO SAPIENS DNA sequence DC(D320):DG(C319) DA(D321):DT(C318) DT(D322):DA(C317) DT(D323):DA(C316) DA(D324):DT(C315) DG(D325):DC(C314) DC(D326):DG(C313) DA(D327):DT(C312) DT(D328):DA(C311) DG(D329):DC(C310) DA(D330):DT(C309) DC(D331):DG(C308) DA(D332):DT(C307) DA(D333):DT(C306) DA(D334):DT(C305) DG(D335):DC(C304) DA(D336):DT(C303) DC(D337):DG(C302) DA(D338):DT(C301) chainA ( 43) SER47 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 44) GLN48 0 0 0 0 0 0 0 0 6 3 0 0 0 0 0 0 0 0 0 ( 45) THR49 0 0 0 0 0 1 6 8 0 0 0 0 0 0 0 0 0 0 0 ( 49) ARG53 0 0 0 0 0 5 5 5 0 0 0 0 0 0 0 0 0 0 0 (116) VAL150 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (120) ASN154 0 0 9 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (123) GLN157 9 7 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (127) ARG161 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 5) ARG210 0 0 0 0 0 0 0 0 0 0 6 9 0 0 0 0 0 0 0 ( 8) ASN213 0 0 0 0 0 0 0 0 0 0 0 3 6 0 0 0 0 0 0 ( 10) PHE215 0 0 0 0 0 0 0 0 0 0 0 0 4 3 0 0 0 0 0 ( 11) MET216 0 0 0 0 0 0 0 0 0 0 0 0 11 13 0 0 0 0 0 ( 18) ARG223 0 0 0 0 0 0 0 0 0 0 0 0 0 3 8 0 0 0 0 ( 30) ASN235 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 16 0 0 0 ( 31) SER236 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 ( 34) SER239 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5 0 0 0 0 ( 72) TYR277 0 0 0 0 0 0 0 0 0 4 4 0 0 0 0 0 0 0 0 prot.sequence eepsdleeleqfaktfkqrriklgftqgdvglamgklygndfSQTtisRfealnlsfknmaklkpllekwlndaesietnirvaleksflenqkptseeitmiadqlnmekevirVwfcNrrQkekRin/drvkRpmNaFMvwsrgqRrkmaqenpkmhNSeiSkrlgaewkllsetekrpfideakrlralhmkehpdykYrprrk >1oct_C:lambda_repressor-like_DNA-binding_domains;Homeodomain-like; title=CRYSTAL STRUCTURE OF THE OCT-1 POU DOMAIN BOUND TO AN OCTAMER SITE: DNA RECOGNITION WITH TETHERED DNA-BINDING MODULES organism=? DNA sequence DG(A202):DC(B230) DT(A203):DA(B229) DA(A204):DT(B228) DT(A205):DA(B227) DG(A206):DC(B226) DC(A207):DG(B225) DA(A208):DT(B224) DA(A209):DT(B223) DA(A210):DT(B222) DT(A211):DA(B221) DA(A212):DT(B220) DA(A213):DT(B219) DG(A214):DC(B218) DG(A215):DC(B217) chainC ( 39) SER43 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 40) GLN44 0 9 9 0 0 0 0 0 0 0 0 0 0 0 ( 41) THR45 0 0 0 10 6 3 0 0 0 0 0 0 0 0 ( 44) SER48 0 0 2 2 0 0 0 0 0 0 0 0 0 0 ( 45) ARG49 0 0 0 0 7 8 4 0 0 0 0 0 0 0 ( 51) LEU55 0 0 0 0 0 0 1 0 0 0 0 0 0 0 ( 72) ARG102 0 0 0 0 0 0 1 3 3 0 0 0 0 0 ( 75) ARG105 0 0 0 0 1 17 10 3 0 0 0 0 0 0 (117) VAL147 0 0 0 0 0 0 0 0 2 3 0 0 0 0 (120) CYS150 0 0 0 0 0 0 0 0 0 0 0 2 0 0 (121) ASN151 0 0 0 0 0 0 0 3 8 0 0 0 0 0 prot.sequence dleeleqfaktfkqrriklgftqgdvglamgklygndfSQTtiSRfealnLsfknmcklkpllekwlndaeRkkRtsietnirvaleksflenqkptseeitmiadqlnmekevirVwfCNrrqkekrinp >1odg_A:Restriction_endonuclease-like; title=VERY-SHORT-PATCH DNA REPAIR ENDONUCLEASE BOUND TO ITS REACTION PRODUCT SITE organism=ESCHERICHIA COLI DNA sequence DT(W1):DG(F8) DA(W2):DT(F7) DG(W3):5CM(F6) DG(W4):DC(F5) DC(W5):DG(F4) 5CM(W6):DG(F3) DT(W7):DA(F2) DG(W8):DT(F1) chainA ( 45) PHE67 0 5 0 0 0 0 0 0 ( 46) TRP68 66 20 0 0 0 0 0 0 ( 47) HIS69 3 0 0 0 0 0 0 0 ( 57) PRO79 0 2 0 0 0 0 0 0 ( 63) PHE85 4 0 0 0 0 0 0 0 ( 64) TRP86 11 4 0 0 0 0 0 0 ( 67) LYS89 13 0 0 0 0 0 0 0 ( 71) ASN93 9 0 0 0 0 0 0 0 prot.sequence aiekrlaslltgqglafrvqdaslpgrpdfvvdeyrcvifthgcFWHhhhcylfkvPatrteFWleKigkNverdrrdisrlqelgwrvlivwecalrgrekltdealterleewicgegasaqidtqgihlla >1oe5_B:Uracil-DNA_glycosylase-like; title=XENOPUS SMUG1, AN ANTI-MUTATOR URACIL-DNA GLYCOSYLASE organism=XENOPUS LAEVIS DNA sequence DC(E281) DC(E282) DC(E283) DG(E284) DT(E285) DG(E286) DA(E287) DG(E288) DT(E289) DC(E290) DC(E291) DG(E292) chainB (112) VAL147 0 0 0 0 0 0 0 0 0 0 0 5 (116) ARG151 0 0 0 0 0 0 0 0 0 0 0 8 (218) PRO253 0 0 0 0 0 0 0 0 0 0 0 7 (224) ASN259 0 0 0 0 0 0 0 0 0 0 0 17 prot.sequence espadsflkvelelnlklsnlvfqdpvqyvynplvyawaphenyvqtyckskkevlflgmnpgpfgmaqtgvpfgevnhvrdwlqiegpvskpevehpkrrirgfecpqseVsgaRfwslfkslcgqpetffkhcfvhnhcplifmnhsgknltptdlpkaqrdtlleicdealcqavrvlgvklvigvgrfseqrarkalmaegidvtvkgimhpsPrnpqaNkgwegivrgqllelgvlsllt >1oe6_B:Uracil-DNA_glycosylase-like; title=XENOPUS SMUG1, AN ANTI-MUTATOR URACIL-DNA GLYCOSYLASE organism=XENOPUS LAEVIS DNA sequence DC(E281) DC(E282) DC(E283) DG(E284) DT(E285) DG(E286) DA(E287) DG(E288) DT(E289) DC(E290) DC(E291) DG(E292) chainB (112) VAL147 0 0 0 0 0 0 0 0 0 0 0 6 (116) ARG151 0 0 0 0 0 0 0 0 0 0 0 8 (218) PRO253 0 0 0 0 0 0 0 0 0 0 0 5 (224) ASN259 0 0 0 0 0 0 0 0 0 0 0 18 prot.sequence espadsflkvelelnlklsnlvfqdpvqyvynplvyawaphenyvqtyckskkevlflgmnpgpfgmaqtgvpfgevnhvrdwlqiegpvskpevehpkrrirgfecpqseVsgaRfwslfkslcgqpetffkhcfvhnhcplifmnhsgknltptdlpkaqrdtlleicdealcqavrvlgvklvigvgrfseqrarkalmaegidvtvkgimhpsPrnpqaNkgwegivrgqllelgvlsllt >1oh5_AB:DNA_repair_protein_MutS,_domain_III;P-loop_containing_nucleoside_triphosphate_hydrolases; title=THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH A C:A MISMATCH organism=ESCHERICHIA COLI DNA sequence DA(E1):DT(F30) DG(E2):DC(F29) DC(E3):DG(F28) DT(E4):DA(F27) DG(E5):DC(F26) DC(E6):DG(F25) DC(E7):DG(F24) DA(E8):DT(F23) DC(E9):DA(F22) DG(E10):DC(F21) DC(E11):DG(F20) DA(E12):DT(F19) DC(E13):DG(F18) DC(E14):DG(F17) DA(E15):DT(F16) DG(E16):DC(F15) DT(E17):DA(F14) chainA ( 34) ASP35 0 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 ( 35) PHE36 0 0 0 0 0 0 0 17 51 0 0 0 0 0 0 0 0 ( 37) GLU38 0 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 ( 57) ARG58 0 0 0 0 0 0 0 0 0 3 6 0 0 0 0 0 0 ( 67) MET68 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 ( 71) PRO72 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 chainB prot.sequence saienfdahtpmmqqylrlkaqhpeillfyrmgDFyElfyddakrasqlldisltkRgasagepipMagiPyhavenylaklvnqgesvaiceqigdpatskgpverkvvrivtpgtisdeallqerqdnllaaiwqdskgfgyatldissgrfrlsepadretmaaelqrtnpaellyaedfaemsliegrrglrrrplwefeidtarqqlnlqfgtrdlvgfgvenaprglcaagcllqyakdtqrttlphirsitmereqdsiimdaatrrnleitqnlaggaentlasvldctvtpmgsrmlkrwlhmpvrdtrvllerqqtigalqdftaglqpvlrqvgdlerilarlalrtarprdlarmrhafqqlpelraqletvdsapvqalrekmgefaelrdlleraiidtppvlvrdggviasgyneeldewraladgatdylerlevrerertgldtlkvgfnavhgyyiqisrgqshlapinymrrqtlknaeryiipelkeyedkvltskgkalalekqlyeelfdlllphlealqqsasalaeldvlvnlaeraytlnytcptfidkpgiritegrhpvveqvlnepfianplnlspqrrmliitgpnmggkstymrqtalialmayigsyvpaqkveigpidriftrvgfmvemtetanilhnateyslvlmdeigrgtstydglslawacaenlankikaltlfathyfeltqlpekmegvanvhldalehgdtiafmhsvqdgaasksyglavaalagvpkevikrarqklrelesis/mqqylrlkaqhpeillfyrmgdfyelfyddakrASqLldisltpmagipyhavenyLaklvnqgesVaicErkvvrivtpgtisdeallqerqdnllaaiwqdskgfgyatldissgrfrlsepadretmaaelqrtnpaellyaedfaemsliegrrglrrrplwefeidtarqqlnlqfgtrdlvgfgvenaprglcaagcllqyakdtqrttlphirsitmereqdsiimdaatrrnleitqnlaggaentlasvldctvtpmgsrmlkrwlhmpvrdtrvllerqqtigalqdftaglqpvlrqvgdlerilarlalrtarprdlarmrhafqqlpelraqletvdsapvqalrekmgefaelrdlleraiidtppvlvrdggviasgyneeldewraladgatdylerlevrerertgldtlkvgfnavhgyyiqisrgqshlapinymrrqtlknaeryiipelkeyedkvltskgkalalekqlyeelfdlllphlealqqsasalaeldvlvnlaeraytlnytcptfidkpgiritegrhpvveqvlnepfianplnlspqrrmliitgpnmggkstymrqtalialmayigsyvpaqkveigpidriftrvgtfmvemtetanilhnateyslvlmdeigrgtstydglslawacaenlankikaltlfathyfeltqlpekmegvanvhldalehgdtiafmhsvqdgaasksyglavaalagvpkevikrarqklrelesis >1oh6_A:DNA_repair_protein_MutS,_domain_III;P-loop_containing_nucleoside_triphosphate_hydrolases; title=THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH AN A:A MISMATCH organism=ESCHERICHIA COLI DNA sequence DC(F15):DG(E16) DT(F16):DA(E15) DG(F17):DC(E14) DG(F18):DC(E13) DT(F19):DA(E12) DG(F20):DC(E11) DC(F21):DG(E10) DA(F22):DA(E9) DT(F23):DA(E8) DG(F24):DC(E7) DG(F25):DC(E6) DC(F26):DG(E5) DA(F27):DT(E4) DG(F28):DC(E3) DC(F29):DG(E2) DT(F30):DA(E1) chainA ( 32) MET33 0 0 0 0 0 3 6 0 0 0 0 0 0 0 0 0 ( 34) ASP35 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 ( 35) PHE36 0 0 0 0 0 0 0 51 17 0 0 0 0 0 0 0 ( 37) GLU38 0 0 0 0 0 0 0 12 0 0 0 0 0 0 0 0 ( 57) ARG58 0 0 0 0 0 8 2 0 0 0 0 0 0 0 0 0 ( 67) MET68 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 ( 71) PRO72 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 prot.sequence saienfdahtpmmqqylrlkaqhpeillfyrMgDFyElfyddakrasqlldisltkRgasagepipMagiPyhavenylaklvnqgesvaiceqigdpatskgpverkvvrivtpgtisdeallqerqdnllaaiwqdskgfgyatldissgrfrlsepadretmaaelqrtnpaellyaedfaemsliegrrglrrrplwefeidtarqqlnlqfgtrdlvgfgvenaprglcaagcllqyakdtqrttlphirsitmereqdsiimdaatrrnleitqnlaggaentlasvldctvtpmgsrmlkrwlhmpvrdtrvllerqqtigalqdftaglqpvlrqvgdlerilarlalrtarprdlarmrhafqqlpelraqletvdsapvqalrekmgefaelrdlleraiidtppvlvrdggviasgyneeldewraladgatdylerlevrerertgldtlkvgfnavhgyyiqisrgqshlapinymrrqtlknaeryiipelkeyedkvltskgkalalekqlyeelfdlllphlealqqsasalaeldvlvnlaeraytlnytcptfidkpgiritegrhpvveqvlnepfianplnlspqrrmliitgpnmggkstymrqtalialmayigsyvpaqkveigpidriftrvgfmvemtetanilhnateyslvlmdeigrgtstydglslawacaenlankikaltlfathyfeltqlpekmegvanvhldalehgdtiafmhsvqdgaasksyglavaalagvpkevikrarqklrelesis >1oh6_AB:DNA_repair_protein_MutS,_domain_III;P-loop_containing_nucleoside_triphosphate_hydrolases; title=THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH AN A:A MISMATCH organism=ESCHERICHIA COLI DNA sequence DA(E1):DT(F30) DG(E2):DC(F29) DC(E3):DG(F28) DT(E4):DA(F27) DG(E5):DC(F26) DC(E6):DG(F25) DC(E7):DG(F24) DA(E8):DT(F23) DA(E9):DA(F22) DG(E10):DC(F21) DC(E11):DG(F20) DA(E12):DT(F19) DC(E13):DG(F18) DC(E14):DG(F17) DA(E15):DT(F16) DG(E16):DC(F15) chainA ( 32) MET33 0 0 0 0 0 0 0 0 0 6 3 0 0 0 0 0 ( 34) ASP35 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 ( 35) PHE36 0 0 0 0 0 0 0 17 51 0 0 0 0 0 0 0 ( 37) GLU38 0 0 0 0 0 0 0 0 12 0 0 0 0 0 0 0 ( 57) ARG58 0 0 0 0 0 0 0 0 0 2 8 0 0 0 0 0 ( 67) MET68 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 ( 71) PRO72 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 chainB prot.sequence saienfdahtpmmqqylrlkaqhpeillfyrMgDFyElfyddakrasqlldisltkRgasagepipMagiPyhavenylaklvnqgesvaiceqigdpatskgpverkvvrivtpgtisdeallqerqdnllaaiwqdskgfgyatldissgrfrlsepadretmaaelqrtnpaellyaedfaemsliegrrglrrrplwefeidtarqqlnlqfgtrdlvgfgvenaprglcaagcllqyakdtqrttlphirsitmereqdsiimdaatrrnleitqnlaggaentlasvldctvtpmgsrmlkrwlhmpvrdtrvllerqqtigalqdftaglqpvlrqvgdlerilarlalrtarprdlarmrhafqqlpelraqletvdsapvqalrekmgefaelrdlleraiidtppvlvrdggviasgyneeldewraladgatdylerlevrerertgldtlkvgfnavhgyyiqisrgqshlapinymrrqtlknaeryiipelkeyedkvltskgkalalekqlyeelfdlllphlealqqsasalaeldvlvnlaeraytlnytcptfidkpgiritegrhpvveqvlnepfianplnlspqrrmliitgpnmggkstymrqtalialmayigsyvpaqkveigpidriftrvgfmvemtetanilhnateyslvlmdeigrgtstydglslawacaenlankikaltlfathyfeltqlpekmegvanvhldalehgdtiafmhsvqdgaasksyglavaalagvpkevikrarqklrelesis/mqqylrlkaqhpeillfyrmgdfyelfyddaKrASqLldisltpmagipyhavenyLaklvnqgesVaicErkvvrivtpgtisdeallqerqdnllaaiwqdskgfgyatldissgrfrlsepadretmaaelqrtnpaellyaedfaemsliegrrglrrrplwefeidtarqqlnlqfgtrdlvgfgvenaprglcaagcllqyakdtqrttlphirsitmereqdsiimdaatrrnleitqnlaggaentlasvldctvtpmgsrmlkrwlhmpvrdtrvllerqqtigalqdftaglqpvlrqvgdlerilarlalrtarprdlarmrhafqqlpelraqletvdsapvqalrekmgefaelrdlleraiidtppvlvrdggviasgyneeldewraladgatdylerlevrerertgldtlkvgfnavhgyyiqisrgqshlapinymrrqtlknaeryiipelkeyedkvltskgkalalekqlyeelfdlllphlealqqsasalaeldvlvnlaeraytlnytcptfidkpgiritegrhpvveqvlnepfianplnlspqrrmliitgpnmggkstymrqtalialmayigsyvpaqkveigpidriftrvgtfmvemtetanilhnateyslvlmdeigrgtstydglslawacaenlankikaltlfathyfeltqlpekmegvanvhldalehgdtiafmhsvqdgaasksyglavaalagvpkevikrarqklrelesis >1oh7_AB:DNA_repair_protein_MutS,_domain_III;P-loop_containing_nucleoside_triphosphate_hydrolases; title=THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH A G:G MISMATCH organism=ESCHERICHIA COLI DNA sequence DA(E1):DT(F30) DG(E2):DC(F29) DC(E3):DG(F28) DT(E4):DA(F27) DG(E5):DC(F26) DC(E6):DG(F25) DC(E7):DG(F24) DA(E8):DT(F23) DG(E9):DG(F22) DG(E10):DC(F21) DC(E11):DG(F20) DA(E12):DT(F19) DC(E13):DG(F18) DC(E14):DG(F17) DA(E15):DT(F16) DG(E16):DC(F15) DT(E17):DA(F14) chainA ( 32) MET33 0 0 0 0 0 0 0 0 1 4 0 0 0 0 0 0 0 ( 34) ASP35 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 ( 35) PHE36 0 0 0 0 0 0 0 20 57 0 0 0 0 0 0 0 0 ( 37) GLU38 0 0 0 0 0 0 0 0 12 2 0 0 0 0 0 0 0 ( 57) ARG58 0 0 0 0 0 0 0 0 0 2 8 0 0 0 0 0 0 ( 67) MET68 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 ( 71) PRO72 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 chainB prot.sequence saienfdahtpmmqqylrlkaqhpeillfyrMgDFyElfyddakrasqlldisltkRgasagepipMagiPyhavenylaklvnqgesvaiceqigdpatskgpverkvvrivtpgtisdeallqerqdnllaaiwqdskgfgyatldissgrfrlsepadretmaaelqrtnpaellyaedfaemsliegrrglrrrplwefeidtarqqlnlqfgtrdlvgfgvenaprglcaagcllqyakdtqrttlphirsitmereqdsiimdaatrrnleitqnlaggaentlasvldctvtpmgsrmlkrwlhmpvrdtrvllerqqtigalqdftaglqpvlrqvgdlerilarlalrtarprdlarmrhafqqlpelraqletvdsapvqalrekmgefaelrdlleraiidtppvlvrdggviasgyneeldewraladgatdylerlevrerertgldtlkvgfnavhgyyiqisrgqshlapinymrrqtlknaeryiipelkeyedkvltskgkalalekqlyeelfdlllphlealqqsasalaeldvlvnlaeraytlnytcptfidkpgiritegrhpvveqvlnepfianplnlspqrrmliitgpnmggkstymrqtalialmayigsyvpaqkveigpidriftrvgfmvemtetanilhnateyslvlmdeigrgtstydglslawacaenlankikaltlfathyfeltqlpekmegvanvhldalehgdtiafmhsvqdgaasksyglavaalagvpkevikrarqklrelesis/mqqylrlkaqhpeillfyrmgdfyelfyddaKrASqLldisltpmagipyhavenyLaklvnqgesVaicErkvvrivtpgtisdeallqerqdnllaaiwqdskgfgyatldissgrfrlsepadretmaaelqrtnpaellyaedfaemsliegrrglrrrplwefeidtarqqlnlqfgtrdlvgfgvenaprglcaagcllqyakdtqrttlphirsitmereqdsiimdaatrrnleitqnlaggaentlasvldctvtpmgsrmlkrwlhmpvrdtrvllerqqtigalqdftaglqpvlrqvgdlerilarlalrtarprdlarmrhafqqlpelraqletvdsapvqalrekmgefaelrdlleraiidtppvlvrdggviasgyneeldewraladgatdylerlevrerertgldtlkvgfnavhgyyiqisrgqshlapinymrrqtlknaeryiipelkeyedkvltskgkalalekqlyeelfdlllphlealqqsasalaeldvlvnlaeraytlnytcptfidkpgiritegrhpvveqvlnepfianplnlspqrrmliitgpnmggkstymrqtalialmayigsyvpaqkveigpidriftrvgtfmvemtetanilhnateyslvlmdeigrgtstydglslawacaenlankikaltlfathyfeltqlpekmegvanvhldalehgdtiafmhsvqdgaasksyglavaalagvpkevikrarqklrelesis >1oh8_AB:DNA_repair_protein_MutS,_domain_III;P-loop_containing_nucleoside_triphosphate_hydrolases; title=THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH AN UNPAIRED THYMIDINE organism=ESCHERICHIA COLI DNA sequence DG(F17):DC(E13) DT(F18):DA(E12) DG(F19):DC(E11) DC(F21):DG(E10) DT(F22):DG(E9) DT(F23):DA(E8) DG(F24):DC(E7) DG(F25):DC(E6) DC(F26):DG(E5) DA(F27):DT(E4) DG(F28):DC(E3) DC(F29):DG(E2) DT(F30):DA(E1) chainA ( 32) MET33 0 0 0 5 0 0 0 0 0 0 0 0 0 ( 34) ASP35 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 35) PHE36 0 0 0 0 50 20 0 0 0 0 0 0 0 ( 37) GLU38 0 0 0 2 11 0 0 0 0 0 0 0 0 ( 57) ARG58 0 0 0 11 0 0 0 0 0 0 0 0 0 ( 67) MET68 0 0 0 0 3 0 0 0 0 0 0 0 0 ( 71) PRO72 0 0 0 0 0 3 0 0 0 0 0 0 0 chainB prot.sequence saienfdahtpmmqqylrlkaqhpeillfyrMgDFyElfyddakrasqlldisltkRgasagepipMagiPyhavenylaklvnqgesvaiceqigdpatskgpverkvvrivtpgtisdeallqerqdnllaaiwqdskgfgyatldissgrfrlsepadretmaaelqrtnpaellyaedfaemsliegrrglrrrplwefeidtarqqlnlqfgtrdlvgfgvenaprglcaagcllqyakdtqrttlphirsitmereqdsiimdaatrrnleitqnlaggaentlasvldctvtpmgsrmlkrwlhmpvrdtrvllerqqtigalqdftaglqpvlrqvgdlerilarlalrtarprdlarmrhafqqlpelraqletvdsapvqalrekmgefaelrdlleraiidtppvlvrdggviasgyneeldewraladgatdylerlevrerertgldtlkvgfnavhgyyiqisrgqshlapinymrrqtlknaeryiipelkeyedkvltskgkalalekqlyeelfdlllphlealqqsasalaeldvlvnlaeraytlnytcptfidkpgiritegrhpvveqvlnepfianplnlspqrrmliitgpnmggkstymrqtalialmayigsyvpaqkveigpidriftrvgfmvemtetanilhnateyslvlmdeigrgtstydglslawacaenlankikaltlfathyfeltqlpekmegvanvhldalehgdtiafmhsvqdgaasksyglavaalagvpkevikrarqklrelesis/mqqylrlkaqhpeillfyrmgdfyelfyddaKrASqLldisltpmagipyhavenyLaklvnqgesVaicErkvvrivtpgtisdeallqerqdnllaaiwqdskgfgyatldissgrfrlsepadretmaaelqrtnpaellyaedfaemsliegrrglrrrplwefeidtarqqlnlqfgtrdlvgfgvenaprglcaagcllqyakdtqrttlphirsitmereqdsiimdaatrrnleitqnlaggaentlasvldctvtpmgsrmlkrwlhmpvrdtrvllerqqtigalqdftaglqpvlrqvgdlerilarlalrtarprdlarmrhafqqlpelraqletvdsapvqalrekmgefaelrdlleraiidtppvlvrdggviasgyneeldewraladgatdylerlevrerertgldtlkvgfnavhgyyiqisrgqshlapinymrrqtlknaeryiipelkeyedkvltskgkalalekqlyeelfdlllphlealqqsasalaeldvlvnlaeraytlnytcptfidkpgiritegrhpvveqvlnepfianplnlspqrrmliitgpnmggkstymrqtalialmayigsyvpaqkveigpidriftrvgtfmvemtetanilhnateyslvlmdeigrgtstydglslawacaenlankikaltlfathyfeltqlpekmegvanvhldalehgdtiafmhsvqdgaasksyglavaalagvpkevikrarqklrelesis >1orp_A:DNA-glycosylase; title=STRUCTURE OF A TRAPPED ENDONUCLEASE III-DNA COVALENT INTERMEDIATE: ESTRANGED-ADENINE COMPLEX organism=Geobacillus stearothermophilus DNA sequence DG(C13):DC(B11) DT(C14):DA(B10) DC(C15):DG(B9) DC(C16):DG(B8) DA(C17):DT(B7) PED(C18):DA(B6) DG(C19):DC(B5) DT(C20):DA(B4) DC(C21):DG(B3) DT(C22):DA(B2) chainA ( 42) GLN42 0 0 0 0 4 2 24 0 0 0 ( 44) THR44 0 0 0 0 2 0 0 0 0 0 ( 82) LEU82 0 0 0 0 0 15 10 0 0 0 ( 85) ASN85 0 0 0 0 0 0 1 0 0 0 prot.sequence mltkqqirycldemakmfpdahcelvhrnpfelliavvlsaQcTdalvnkvtkrlfekyrtphdyiavpleeleqdirsigLyrNkarniqklcamlidkyngevprdrdelmklpgvgrktanvvvsvafgvpaiavdthvervskrlgfcrwddsvlevektlmkiipkeewsithhrmiffgryhckaqspqcpscpllhlcregkkrmr >1osb_C:Origin_of_replication-binding_domain,_RBD-like; title=CONJUGATIVE RELAXASE TRWC IN COMPLEX WITH ORIT DNA. METAL-FREE STRUCTURE. organism=Escherichia coli DNA sequence DG(D3):DC(D16) DC(D4):DG(D15) DA(D5):DT(D14) DC(D6):DG(D13) DC(D7):DG(D12) DG(D8):DA(D10) chainC ( 63) ALA73 0 0 0 4 2 0 ( 65) ARG75 0 4 7 2 0 0 ( 71) ARG81 1 0 0 0 0 0 (118) ARG128 9 13 8 0 0 0 (120) LYS130 0 0 2 8 0 0 prot.sequence mlshmvltrqdigraasyyegdasewqgkgaeelglsgevdskrfrellagnigeghrimrsAtRqdskeRigldltfsapksvslqalvagdaeiikahdravartleqaearaqaRqKiqgktriettgnlvigkfrhetsrerdpqlhthavilnmtkrsdgqwralkndeivkatrylgavynaelahelqklgyqlrygkdgnfdlahidrqqiegfskrteqiaewyaargldpnsvsleqkqaakvlsrakktsvdrealraewqatakelgidf >1osl_AB: title=SOLUTION STRUCTURE OF A DIMERIC LACTOSE DNA-BINDING DOMAIN COMPLEXED TO A NONSPECIFIC DNA SEQUENCE organism=ESCHERICHIA COLI DNA sequence DC(D1):DG(C18) DG(D2):DC(C17) DA(D3):DT(C16) DT(D4):DA(C15) DA(D5):DT(C14) DA(D6):DT(C13) DG(D7):DC(C12) DA(D8):DT(C11) DT(D9):DA(C10) DA(D10):DT(C9) DT(D11):DA(C8) DC(D12):DG(C7) DT(D13):DA(C6) DT(D14):DA(C5) DA(D15):DT(C4) DT(D16):DA(C3) DC(D17):DG(C2) DG(D18):DC(C1) chainA ( 7) TYR7 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 ( 17) TYR17 0 0 0 0 0 0 0 0 0 0 4 1 0 0 0 0 0 0 ( 18) GLN18 0 0 0 0 0 0 0 0 0 0 0 2 8 9 0 0 0 0 ( 19) THR19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 ( 21) SER21 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 ( 22) ARG22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 12 0 0 ( 29) HIS29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 ( 51) ARG51 0 0 0 0 0 0 0 3 4 3 0 0 0 0 0 0 0 0 chainB ( 7) TYR7 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 ( 16) SER16 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 17) TYR17 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 ( 18) GLN18 0 0 0 0 1 11 8 0 0 0 0 0 0 0 0 0 0 0 ( 22) ARG22 0 0 8 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 59) LYS59 0 0 0 0 0 0 0 0 2 4 0 0 0 0 0 0 0 0 prot.sequence mkpvtlYdvaeyagvsYQTvSRvvnqasHvsaktrekveaamaelnyipnRcaqqlagkqsl/mkpvtlYdvaeyagvSYQtvsRvvnqashvsaktrekveaamaelnyipnrcaqqlagKqsl >1osl_B:lambda_repressor-like_DNA-binding_domains; title=SOLUTION STRUCTURE OF A DIMERIC LACTOSE DNA-BINDING DOMAIN COMPLEXED TO A NONSPECIFIC DNA SEQUENCE organism=ESCHERICHIA COLI DNA sequence DC(D1):DG(C18) DG(D2):DC(C17) DA(D3):DT(C16) DT(D4):DA(C15) DA(D5):DT(C14) DA(D6):DT(C13) DG(D7):DC(C12) DA(D8):DT(C11) DT(D9):DA(C10) DA(D10):DT(C9) DT(D11):DA(C8) DC(D12):DG(C7) DT(D13):DA(C6) DT(D14):DA(C5) DA(D15):DT(C4) DT(D16):DA(C3) DC(D17):DG(C2) DG(D18):DC(C1) chainB ( 7) TYR7 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 ( 16) SER16 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 17) TYR17 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 ( 18) GLN18 0 0 0 0 1 11 8 0 0 0 0 0 0 0 0 0 0 0 ( 22) ARG22 0 0 8 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 59) LYS59 0 0 0 0 0 0 0 0 2 4 0 0 0 0 0 0 0 0 prot.sequence mkpvtlYdvaeyagvSYQtvsRvvnqashvsaktrekveaamaelnyipnrcaqqlagKqsl >1otc_AB:Nucleic_acid-binding_proteins; title=THE O. NOVA TELOMERE END BINDING PROTEIN COMPLEXED WITH SINGLE STRAND DNA organism=STERKIELLA NOVA DNA sequence DG(D1) DG(D2) DG(D3) DG(D4) DT(D5) DT(D6) DT(D7) DT(D8) DG(D9) DG(D10) DG(D11) DG(D12) chainA ( 24) ASP60 0 0 1 0 0 0 0 0 0 0 0 0 ( 26) THR62 0 0 0 5 0 0 0 0 0 0 0 0 ( 27) PHE63 0 0 0 0 0 0 0 0 0 0 9 0 ( 29) TYR65 0 0 0 10 0 0 0 0 0 0 0 0 ( 30) LYS66 0 0 0 0 0 0 0 2 0 0 0 0 ( 36) TYR72 0 0 0 0 0 0 0 7 0 0 0 0 ( 41) LYS77 0 0 6 0 0 0 0 0 0 0 0 0 ( 71) PHE107 0 0 0 0 0 0 0 0 0 0 5 14 ( 76) ILE112 0 0 0 0 0 0 0 0 0 0 6 0 ( 78) HIS114 0 0 0 0 0 0 0 0 0 0 2 0 ( 92) ARG128 0 2 0 0 0 0 0 0 0 0 0 0 ( 94) TYR130 0 37 0 0 0 0 0 0 0 0 0 0 ( 99) GLN135 0 11 0 0 0 0 0 0 0 0 0 0 (187) ASP223 0 0 9 11 0 0 0 0 0 0 0 0 (189) ASP225 0 0 15 0 0 0 0 0 0 0 0 0 (201) ASP237 0 0 0 0 0 0 0 0 0 1 0 0 (203) TYR239 0 0 0 0 0 0 0 0 0 44 0 0 (204) THR240 0 0 0 0 0 0 0 0 0 2 0 0 (222) LEU258 0 0 0 0 0 0 0 0 0 1 0 0 (224) LEU260 0 0 0 0 0 0 0 0 0 0 13 0 (225) LYS261 0 0 0 0 0 0 0 0 0 0 2 0 (236) ARG272 0 0 1 0 0 0 0 0 0 0 0 0 (238) ARG274 0 0 35 10 0 0 0 0 0 0 0 0 (239) SER275 0 0 0 6 0 0 0 0 0 0 0 0 (255) SER291 0 0 0 0 4 0 0 0 0 0 0 0 (256) HIS292 0 0 0 0 5 32 0 0 0 0 0 0 (257) TYR293 0 0 0 38 18 0 0 0 0 0 0 0 chainB ( 35) LYS44 0 0 0 0 0 0 0 0 1 0 0 0 ( 36) GLU45 0 0 0 0 0 0 3 0 15 0 0 0 ( 39) PRO48 0 0 0 0 0 0 0 0 1 0 0 0 ( 40) HIS49 0 0 0 0 0 0 0 0 11 0 0 0 ( 42) LEU51 0 0 0 0 0 0 0 0 3 0 0 0 ( 49) PHE58 0 0 0 0 0 0 0 0 2 0 0 0 ( 97) PHE106 0 0 0 0 0 0 0 0 11 0 0 0 (100) TYR109 0 0 0 0 0 0 0 0 0 4 0 0 (125) TYR134 0 0 0 0 32 4 1 0 0 0 0 0 (131) ARG140 0 0 0 0 0 0 0 0 0 36 0 0 (136) LYS145 0 0 0 0 0 0 0 0 0 4 0 0 prot.sequence eyvelakasltsaqpqhfyavviDaTFpYKtnqerYicslKivdptlylkqqkgagdasdyatlvlyakrFedlpIiHragdiirvhratlRlYngqrQfnanvfyssswalfstdkrsvtqeinnqdavsdttpfsfsskhatiekneisilqnlrkwanqyfssysvissdmytalnkaqaqkgDfDvvakilqvhelDeYTnelklkdasgqvfytlsLkLKfphvrtgevvRiRSatydetstqkkvlilSHYsniitfiqssklakelrakiqddhsvevaslkknvslnavvltevdkkhaalpstslqdlfhhadsdkelqaqdtfrtqfyvtkiepsdvkewvkgydrktkkssslkgasgkgdnifqvqflvkdastqlnnntyrvllytqdglganffnvkadnlhknadarkkledsaelltkfnsyvdavverrngfylikdtkliy/qqsafkqlytelfnnegdfskvssnlkkplkcyvKEsyPHfLvtdgyfFvapyftkeavnefhakfpnvnivdltdkvivinnwslelrrvnsaevFtsYanlearlivhsfkpnlqerlnptrYpvnlfRddefKttiqhfrhtalqaainktvkgdnlvdiskvadaagkkgkvdagivkasaskgdefsdfsfkegntatlkiadifvqe >1owr_P:p53-like_transcription_factors;E_set_domains; title=CRYSTAL STRUCTURE OF HUMAN NFAT1 BOUND MONOMERICALLY TO DNA organism=Homo sapiens DNA sequence DG(E4003):DC(F5015) DC(E4004):DG(F5014) DT(E4005):DA(F5013) DG(E4006):DC(F5012) DG(E4007):DC(F5011) DA(E4008):DT(F5010) DA(E4009):DT(F5009) DA(E4010):DT(F5008) DA(E4011):DT(F5007) DA(E4012):DT(F5006) DT(E4013):DA(F5005) DA(E4014):DT(F5004) DG(E4015):DC(F5003) chainP ( 27) ARG421 0 0 0 4 12 4 0 0 0 0 0 0 0 ( 30) TYR424 0 0 0 0 0 4 7 0 0 0 0 0 0 ( 32) THR426 0 0 0 0 0 2 0 0 0 0 0 0 0 ( 33) GLU427 0 0 0 1 5 2 0 0 0 0 0 0 0 ( 36) ARG430 0 0 7 10 3 0 0 0 0 0 0 0 0 (143) ARG537 0 0 0 0 0 0 0 0 0 1 1 0 0 (177) GLN571 0 0 0 0 2 7 0 0 0 0 0 0 0 (178) ARG572 0 0 0 0 0 0 0 5 7 0 0 0 0 prot.sequence vplewplssqsgsyelrievqpkphhRahYeTEgsRgavkaptgghpvvqlhgymenkplglqifigtaderilkphafyqvhritgktvtttsyekivgntkvleiplepknnmratidcagilklrnadielrkgetdigRkntrvrlvfrvhipessgrivslqtasnpiecsQRsahelpmverqdtdsclvyggqqmiltgqnftseskvvftekttdgqqiwemeatvdkdksqpnmlfveipeyrnkhirtpvkvnfyvingkrkrsqpqhftyhpv >1ozj_AB: title=CRYSTAL STRUCTURE OF SMAD3-MH1 BOUND TO DNA AT 2.4 A RESOLUTION organism=Homo sapiens DNA sequence DG(D2001):DC(C1015) DT(D2002):DA(C1014) DA(D2003):DT(C1013) DT(D2004):DA(C1012) DG(D2005):DC(C1011) DT(D2006):DA(C1010) DC(D2007):DG(C1009) DT(D2008):DA(C1008) DA(D2009):DT(C1007) DG(D2010):DC(C1006) DA(D2011):DT(C1005) DC(D2012):DG(C1004) DT(D2013):DA(C1003) DG(D2014):DC(C1002) DA(D2015):DT(C1001) chainA ( 68) ARG74 0 0 0 15 14 2 0 0 0 0 0 0 0 0 0 ( 70) GLN76 0 0 0 0 0 0 2 8 5 0 0 0 0 0 0 ( 73) HIS79 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 ( 75) LYS81 0 0 0 0 0 4 7 6 0 0 0 0 0 0 0 chainB ( 66) ARG74 0 0 0 0 0 0 0 0 0 0 2 12 6 0 0 ( 68) GLN76 0 0 0 0 0 0 0 5 8 2 0 0 0 0 0 ( 73) LYS81 0 0 0 0 0 0 0 0 5 9 8 0 0 0 0 prot.sequence ftppivkrllgwkkgeqngqeekwcekavkslvkklkktgqldelekaittqnvntkcitiprsldgRlQvsHrKglphviycrlwrwpdlhshhelramelcefafnmkkdevcvnpyhyqrvet/ppivkrllgwkkgeqngqeekwcekavkslvkklkktgqldelekaittqnvntkcitiprsldgRlQvshrKglphviycrlwrwpdlhshhelramelcefafnmkkdevcvnpyhyqrvet >1ozj_B:SMAD_MH1_domain; title=CRYSTAL STRUCTURE OF SMAD3-MH1 BOUND TO DNA AT 2.4 A RESOLUTION organism=Homo sapiens DNA sequence DG(D2001):DC(C1015) DT(D2002):DA(C1014) DA(D2003):DT(C1013) DT(D2004):DA(C1012) DG(D2005):DC(C1011) DT(D2006):DA(C1010) DC(D2007):DG(C1009) DT(D2008):DA(C1008) DA(D2009):DT(C1007) DG(D2010):DC(C1006) DA(D2011):DT(C1005) DC(D2012):DG(C1004) DT(D2013):DA(C1003) DG(D2014):DC(C1002) DA(D2015):DT(C1001) chainB ( 66) ARG74 0 0 0 0 0 0 0 0 0 0 2 12 6 0 0 ( 68) GLN76 0 0 0 0 0 0 0 5 8 2 0 0 0 0 0 ( 73) LYS81 0 0 0 0 0 0 0 0 5 9 8 0 0 0 0 prot.sequence ppivkrllgwkkgeqngqeekwcekavkslvkklkktgqldelekaittqnvntkcitiprsldgRlQvshrKglphviycrlwrwpdlhshhelramelcefafnmkkdevcvnpyhyqrvet >1p34_ABCDEFGH:Histone-fold;lambda_repressor-like_DNA-binding_domains;p53-like_transcription_factors;Nucleic_acid-binding_proteins;P-loop_containing_nucleoside_triphosphate_hydrolases; title=CRYSTALLOGRAPHIC STUDIES OF NUCLEOSOME CORE PARTICLES CONTAINING HISTONE 'SIN' MUTANTS organism=XENOPUS LAEVIS DNA sequence DA(I1):DT(J292) DT(I2):DA(J291) DC(I3):DG(J290) DA(I4):DT(J289) DA(I5):DT(J288) DT(I6):DA(J287) DA(I7):DT(J286) DT(I8):DA(J285) DC(I9):DG(J284) DC(I10):DG(J283) DA(I11):DT(J282) DC(I12):DG(J281) DC(I13):DG(J280) DT(I14):DA(J279) DG(I15):DC(J278) DC(I16):DG(J277) DA(I17):DT(J276) DG(I18):DC(J275) DA(I19):DT(J274) DT(I20):DA(J273) DT(I21):DA(J272) DC(I22):DG(J271) DT(I23):DA(J270) DA(I24):DT(J269) DC(I25):DG(J268) DC(I26):DG(J267) DA(I27):DT(J266) DA(I28):DT(J265) DA(I29):DT(J264) DA(I30):DT(J263) DG(I31):DC(J262) DT(I32):DA(J261) DG(I33):DC(J260) DT(I34):DA(J259) DA(I35):DT(J258) DT(I36):DA(J257) DT(I37):DA(J256) DT(I38):DA(J255) DG(I39):DC(J254) DG(I40):DC(J253) DA(I41):DT(J252) DA(I42):DT(J251) DA(I43):DT(J250) DC(I44):DG(J249) DT(I45):DA(J248) DG(I46):DC(J247) DC(I47):DG(J246) DT(I48):DA(J245) DC(I49):DG(J244) DC(I50):DG(J243) DA(I51):DT(J242) DT(I52):DA(J241) DC(I53):DG(J240) DA(I54):DT(J239) DA(I55):DT(J238) DA(I56):DT(J237) DA(I57):DT(J236) DG(I58):DC(J235) DG(I59):DC(J234) DC(I60):DG(J233) DA(I61):DT(J232) DT(I62):DA(J231) DG(I63):DC(J230) DT(I64):DA(J229) DT(I65):DA(J228) DC(I66):DG(J227) DA(I67):DT(J226) DG(I68):DC(J225) DC(I69):DG(J224) DG(I70):DC(J223) DG(I71):DC(J222) DA(I72):DT(J221) DA(I73):DT(J220) DT(I74):DA(J219) DT(I75):DA(J218) DC(I76):DG(J217) DC(I77):DG(J216) DG(I78):DC(J215) DC(I79):DG(J214) DT(I80):DA(J213) DG(I81):DC(J212) DA(I82):DT(J211) DA(I83):DT(J210) DC(I84):DG(J209) DA(I85):DT(J208) DT(I86):DA(J207) DG(I87):DC(J206) DC(I88):DG(J205) DC(I89):DG(J204) DT(I90):DA(J203) DT(I91):DA(J202) DT(I92):DA(J201) DT(I93):DA(J200) DG(I94):DC(J199) DA(I95):DT(J198) DT(I96):DA(J197) DG(I97):DC(J196) DG(I98):DC(J195) DA(I99):DT(J194) DG(I100):DC(J193) DC(I101):DG(J192) DA(I102):DT(J191) DG(I103):DC(J190) DT(I104):DA(J189) DT(I105):DA(J188) DT(I106):DA(J187) DC(I107):DG(J186) DC(I108):DG(J185) DA(I109):DT(J184) DA(I110):DT(J183) DA(I111):DT(J182) DT(I112):DA(J181) DA(I113):DT(J180) DC(I114):DG(J179) DA(I115):DT(J178) DC(I116):DG(J177) DT(I117):DA(J176) DT(I118):DA(J175) DT(I119):DA(J174) DT(I120):DA(J173) DG(I121):DC(J172) DG(I122):DC(J171) DT(I123):DA(J170) DA(I124):DT(J169) DG(I125):DC(J168) DA(I126):DT(J167) DA(I127):DT(J166) DT(I128):DA(J165) DC(I129):DG(J164) DT(I130):DA(J163) DG(I131):DC(J162) DC(I132):DG(J161) DA(I133):DT(J160) DG(I134):DC(J159) DG(I135):DC(J158) DT(I136):DA(J157) DG(I137):DC(J156) DG(I138):DC(J155) DA(I139):DT(J154) DT(I140):DA(J153) DA(I141):DT(J152) DT(I142):DA(J151) DT(I143):DA(J150) DG(I144):DC(J149) DA(I145):DT(J148) DT(I146):DA(J147) chainA ( 2) HIS439 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 ( 3) ARG440 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) LEU465 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 26) ARG45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainC chainD chainE ( 3) ARG640 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 4) TYR641 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) LEU665 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) ARG683 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainF ( 11) PRO232 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 24) ARG245 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainG chainH ( 3) ARG1430 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence pHRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlrfqssavmalqeaseaylvalfedtnlcaihakavtimpkdiqlarrirgera/kvlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/akaktrssraglqfpvgrvhrllrkGnyaervgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpk/rkesyaiyvykvlkqvhpdtgisskAmsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsa/phRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakavtimpkdiqlarrirge/lrdniqgitkPairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/kaktrssragLqfpvgrvhrllrKgnyaervgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk/ksRkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsa >1p3a_ABCDEFGH:Histone-fold;lambda_repressor-like_DNA-binding_domains;p53-like_transcription_factors;Nucleic_acid-binding_proteins;P-loop_containing_nucleoside_triphosphate_hydrolases; title=CRYSTALLOGRAPHIC STUDIES OF NUCLEOSOME CORE PARTICLES CONTAINING HISTONE 'SIN' MUTANTS organism=XENOPUS LAEVIS DNA sequence DA(J147):DT(I146) DT(J148):DA(I145) DC(J149):DG(I144) DA(J150):DT(I143) DA(J151):DT(I142) DT(J152):DA(I141) DA(J153):DT(I140) DT(J154):DA(I139) DC(J155):DG(I138) DC(J156):DG(I137) DA(J157):DT(I136) DC(J158):DG(I135) DC(J159):DG(I134) DT(J160):DA(I133) DG(J161):DC(I132) DC(J162):DG(I131) DA(J163):DT(I130) DG(J164):DC(I129) DA(J165):DT(I128) DT(J166):DA(I127) DT(J167):DA(I126) DC(J168):DG(I125) DT(J169):DA(I124) DA(J170):DT(I123) DC(J171):DG(I122) DC(J172):DG(I121) DA(J173):DT(I120) DA(J174):DT(I119) DA(J175):DT(I118) DA(J176):DT(I117) DG(J177):DC(I116) DT(J178):DA(I115) DG(J179):DC(I114) DT(J180):DA(I113) DA(J181):DT(I112) DT(J182):DA(I111) DT(J183):DA(I110) DT(J184):DA(I109) DG(J185):DC(I108) DG(J186):DC(I107) DA(J187):DT(I106) DA(J188):DT(I105) DA(J189):DT(I104) DC(J190):DG(I103) DT(J191):DA(I102) DG(J192):DC(I101) DC(J193):DG(I100) DT(J194):DA(I99) DC(J195):DG(I98) DC(J196):DG(I97) DA(J197):DT(I96) DT(J198):DA(I95) DC(J199):DG(I94) DA(J200):DT(I93) DA(J201):DT(I92) DA(J202):DT(I91) DA(J203):DT(I90) DG(J204):DC(I89) DG(J205):DC(I88) DC(J206):DG(I87) DA(J207):DT(I86) DT(J208):DA(I85) DG(J209):DC(I84) DT(J210):DA(I83) DT(J211):DA(I82) DC(J212):DG(I81) DA(J213):DT(I80) DG(J214):DC(I79) DC(J215):DG(I78) DG(J216):DC(I77) DG(J217):DC(I76) DA(J218):DT(I75) DA(J219):DT(I74) DT(J220):DA(I73) DT(J221):DA(I72) DC(J222):DG(I71) DC(J223):DG(I70) DG(J224):DC(I69) DC(J225):DG(I68) DT(J226):DA(I67) DG(J227):DC(I66) DA(J228):DT(I65) DA(J229):DT(I64) DC(J230):DG(I63) DA(J231):DT(I62) DT(J232):DA(I61) DG(J233):DC(I60) DC(J234):DG(I59) DC(J235):DG(I58) DT(J236):DA(I57) DT(J237):DA(I56) DT(J238):DA(I55) DT(J239):DA(I54) DG(J240):DC(I53) DA(J241):DT(I52) DT(J242):DA(I51) DG(J243):DC(I50) DG(J244):DC(I49) DA(J245):DT(I48) DG(J246):DC(I47) DC(J247):DG(I46) DA(J248):DT(I45) DG(J249):DC(I44) DT(J250):DA(I43) DT(J251):DA(I42) DT(J252):DA(I41) DC(J253):DG(I40) DC(J254):DG(I39) DA(J255):DT(I38) DA(J256):DT(I37) DA(J257):DT(I36) DT(J258):DA(I35) DA(J259):DT(I34) DC(J260):DG(I33) DA(J261):DT(I32) DC(J262):DG(I31) DT(J263):DA(I30) DT(J264):DA(I29) DT(J265):DA(I28) DT(J266):DA(I27) DG(J267):DC(I26) DG(J268):DC(I25) DT(J269):DA(I24) DA(J270):DT(I23) DG(J271):DC(I22) DA(J272):DT(I21) DA(J273):DT(I20) DT(J274):DA(I19) DC(J275):DG(I18) DT(J276):DA(I17) DG(J277):DC(I16) DC(J278):DG(I15) DA(J279):DT(I14) DG(J280):DC(I13) DG(J281):DC(I12) DT(J282):DA(I11) DG(J283):DC(I10) DG(J284):DC(I9) DA(J285):DT(I8) DT(J286):DA(I7) DA(J287):DT(I6) DT(J288):DA(I5) DT(J289):DA(I4) DG(J290):DC(I3) DA(J291):DT(I2) DT(J292):DA(I1) chainA ( 2) HIS439 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 3) ARG440 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) LEU465 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) ARG483 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 22) ARG45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainC ( 29) ARG842 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainD chainE ( 2) HIS639 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 ( 3) ARG640 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) LEU665 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) ARG683 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainF ( 12) PRO232 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) ARG245 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainG chainH prot.sequence pHRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakhvtimpkdiqlarrirgera/dniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/aktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt/esyaiyvykvlkqvhpdtgisskamsimNsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak/pHRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakhvtimpkdiqlarrirgera/vlrdniqgitkPairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfg/trssraglqfpVgrvhrllrkgnyAervgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk/kesyaiyvykvLkqvhpdtgisskAmsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak >1p3b_ABCDEFGH:Histone-fold;lambda_repressor-like_DNA-binding_domains;p53-like_transcription_factors;Nucleic_acid-binding_proteins;P-loop_containing_nucleoside_triphosphate_hydrolases; title=CRYSTALLOGRAPHIC STUDIES OF NUCLEOSOME CORE PARTICLES CONTAINING HISTONE 'SIN' MUTANTS organism=XENOPUS LAEVIS DNA sequence DA(J147):DT(I146) DT(J148):DA(I145) DC(J149):DG(I144) DA(J150):DT(I143) DA(J151):DT(I142) DT(J152):DA(I141) DA(J153):DT(I140) DT(J154):DA(I139) DC(J155):DG(I138) DC(J156):DG(I137) DA(J157):DT(I136) DC(J158):DG(I135) DC(J159):DG(I134) DT(J160):DA(I133) DG(J161):DC(I132) DC(J162):DG(I131) DA(J163):DT(I130) DG(J164):DC(I129) DA(J165):DT(I128) DT(J166):DA(I127) DT(J167):DA(I126) DC(J168):DG(I125) DT(J169):DA(I124) DA(J170):DT(I123) DC(J171):DG(I122) DC(J172):DG(I121) DA(J173):DT(I120) DA(J174):DT(I119) DA(J175):DT(I118) DA(J176):DT(I117) DG(J177):DC(I116) DT(J178):DA(I115) DG(J179):DC(I114) DT(J180):DA(I113) DA(J181):DT(I112) DT(J182):DA(I111) DT(J183):DA(I110) DT(J184):DA(I109) DG(J185):DC(I108) DG(J186):DC(I107) DA(J187):DT(I106) DA(J188):DT(I105) DA(J189):DT(I104) DC(J190):DG(I103) DT(J191):DA(I102) DG(J192):DC(I101) DC(J193):DG(I100) DT(J194):DA(I99) DC(J195):DG(I98) DC(J196):DG(I97) DA(J197):DT(I96) DT(J198):DA(I95) DC(J199):DG(I94) DA(J200):DT(I93) DA(J201):DT(I92) DA(J202):DT(I91) DA(J203):DT(I90) DG(J204):DC(I89) DG(J205):DC(I88) DC(J206):DG(I87) DA(J207):DT(I86) DT(J208):DA(I85) DG(J209):DC(I84) DT(J210):DA(I83) DT(J211):DA(I82) DC(J212):DG(I81) DA(J213):DT(I80) DG(J214):DC(I79) DC(J215):DG(I78) DG(J216):DC(I77) DG(J217):DC(I76) DA(J218):DT(I75) DA(J219):DT(I74) DT(J220):DA(I73) DT(J221):DA(I72) DC(J222):DG(I71) DC(J223):DG(I70) DG(J224):DC(I69) DC(J225):DG(I68) DT(J226):DA(I67) DG(J227):DC(I66) DA(J228):DT(I65) DA(J229):DT(I64) DC(J230):DG(I63) DA(J231):DT(I62) DT(J232):DA(I61) DG(J233):DC(I60) DC(J234):DG(I59) DC(J235):DG(I58) DT(J236):DA(I57) DT(J237):DA(I56) DT(J238):DA(I55) DT(J239):DA(I54) DG(J240):DC(I53) DA(J241):DT(I52) DT(J242):DA(I51) DG(J243):DC(I50) DG(J244):DC(I49) DA(J245):DT(I48) DG(J246):DC(I47) DC(J247):DG(I46) DA(J248):DT(I45) DG(J249):DC(I44) DT(J250):DA(I43) DT(J251):DA(I42) DT(J252):DA(I41) DC(J253):DG(I40) DC(J254):DG(I39) DA(J255):DT(I38) DA(J256):DT(I37) DA(J257):DT(I36) DT(J258):DA(I35) DA(J259):DT(I34) DC(J260):DG(I33) DA(J261):DT(I32) DC(J262):DG(I31) DT(J263):DA(I30) DT(J264):DA(I29) DT(J265):DA(I28) DT(J266):DA(I27) DG(J267):DC(I26) DG(J268):DC(I25) DT(J269):DA(I24) DG(J271):DC(I22) DA(J273):DT(I20) DT(J274):DA(I19) DC(J275):DG(I18) DT(J276):DA(I17) DG(J277):DC(I16) DC(J278):DG(I15) DA(J279):DT(I14) DG(J280):DC(I13) DG(J281):DC(I12) DT(J282):DA(I11) DG(J283):DC(I10) DG(J284):DC(I9) DA(J285):DT(I8) DT(J286):DA(I7) DA(J287):DT(I6) DT(J288):DA(I5) DT(J289):DA(I4) DG(J290):DC(I3) DA(J291):DT(I2) DT(J292):DA(I1) chainA ( 3) HIS439 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 4) ARG440 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) LEU465 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 47) ARG483 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB chainC ( 65) ARG877 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainD chainE ( 4) ARG640 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) LEU665 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 47) ARG683 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainF ( 11) PRO232 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainG chainH prot.sequence kpHRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera/niQGitkpairrlarrggvkaisgliyeEtrgvlkvflenvirdavTytehakrktvtamdvvyalkrqgrtlygfgg/kaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaardnkktRiiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt/srkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqTavrlllpgelakhavsegtkavtkytsak/kphRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera/lrdniqgitkPairrlarrggvkaisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/ktrssraglqFpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk/kesyaiyvykVlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak >1p3b_F:Histone-fold; title=CRYSTALLOGRAPHIC STUDIES OF NUCLEOSOME CORE PARTICLES CONTAINING HISTONE 'SIN' MUTANTS organism=XENOPUS LAEVIS DNA sequence DA(J147):DT(I146) DT(J148):DA(I145) DC(J149):DG(I144) DA(J150):DT(I143) DA(J151):DT(I142) DT(J152):DA(I141) DA(J153):DT(I140) DT(J154):DA(I139) DC(J155):DG(I138) DC(J156):DG(I137) DA(J157):DT(I136) DC(J158):DG(I135) DC(J159):DG(I134) DT(J160):DA(I133) DG(J161):DC(I132) DC(J162):DG(I131) DA(J163):DT(I130) DG(J164):DC(I129) DA(J165):DT(I128) DT(J166):DA(I127) DT(J167):DA(I126) DC(J168):DG(I125) DT(J169):DA(I124) DA(J170):DT(I123) DC(J171):DG(I122) DC(J172):DG(I121) DA(J173):DT(I120) DA(J174):DT(I119) DA(J175):DT(I118) DA(J176):DT(I117) DG(J177):DC(I116) DT(J178):DA(I115) DG(J179):DC(I114) DT(J180):DA(I113) DA(J181):DT(I112) DT(J182):DA(I111) DT(J183):DA(I110) DT(J184):DA(I109) DG(J185):DC(I108) DG(J186):DC(I107) DA(J187):DT(I106) DA(J188):DT(I105) DA(J189):DT(I104) DC(J190):DG(I103) DT(J191):DA(I102) DG(J192):DC(I101) DC(J193):DG(I100) DT(J194):DA(I99) DC(J195):DG(I98) DC(J196):DG(I97) DA(J197):DT(I96) DT(J198):DA(I95) DC(J199):DG(I94) DA(J200):DT(I93) DA(J201):DT(I92) DA(J202):DT(I91) DA(J203):DT(I90) DG(J204):DC(I89) DG(J205):DC(I88) DC(J206):DG(I87) DA(J207):DT(I86) DT(J208):DA(I85) DG(J209):DC(I84) DT(J210):DA(I83) DT(J211):DA(I82) DC(J212):DG(I81) DA(J213):DT(I80) DG(J214):DC(I79) DC(J215):DG(I78) DG(J216):DC(I77) DG(J217):DC(I76) DA(J218):DT(I75) DA(J219):DT(I74) DT(J220):DA(I73) DT(J221):DA(I72) DC(J222):DG(I71) DC(J223):DG(I70) DG(J224):DC(I69) DC(J225):DG(I68) DT(J226):DA(I67) DG(J227):DC(I66) DA(J228):DT(I65) DA(J229):DT(I64) DC(J230):DG(I63) DA(J231):DT(I62) DT(J232):DA(I61) DG(J233):DC(I60) DC(J234):DG(I59) DC(J235):DG(I58) DT(J236):DA(I57) DT(J237):DA(I56) DT(J238):DA(I55) DT(J239):DA(I54) DG(J240):DC(I53) DA(J241):DT(I52) DT(J242):DA(I51) DG(J243):DC(I50) DG(J244):DC(I49) DA(J245):DT(I48) DG(J246):DC(I47) DC(J247):DG(I46) DA(J248):DT(I45) DG(J249):DC(I44) DT(J250):DA(I43) DT(J251):DA(I42) DT(J252):DA(I41) DC(J253):DG(I40) DC(J254):DG(I39) DA(J255):DT(I38) DA(J256):DT(I37) DA(J257):DT(I36) DT(J258):DA(I35) DA(J259):DT(I34) DC(J260):DG(I33) DA(J261):DT(I32) DC(J262):DG(I31) DT(J263):DA(I30) DT(J264):DA(I29) DT(J265):DA(I28) DT(J266):DA(I27) DG(J267):DC(I26) DG(J268):DC(I25) DT(J269):DA(I24) DG(J271):DC(I22) DA(J273):DT(I20) DT(J274):DA(I19) DC(J275):DG(I18) DT(J276):DA(I17) DG(J277):DC(I16) DC(J278):DG(I15) DA(J279):DT(I14) DG(J280):DC(I13) DG(J281):DC(I12) DT(J282):DA(I11) DG(J283):DC(I10) DG(J284):DC(I9) DA(J285):DT(I8) DT(J286):DA(I7) DA(J287):DT(I6) DT(J288):DA(I5) DT(J289):DA(I4) DG(J290):DC(I3) DA(J291):DT(I2) DT(J292):DA(I1) chainF ( 11) PRO232 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence lrdniqgitkPairrlarrggvkaisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg >1p3f_ABCDEFGH:Histone-fold;lambda_repressor-like_DNA-binding_domains;p53-like_transcription_factors;Nucleic_acid-binding_proteins;P-loop_containing_nucleoside_triphosphate_hydrolases; title=CRYSTALLOGRAPHIC STUDIES OF NUCLEOSOME CORE PARTICLES CONTAINING HISTONE 'SIN' MUTANTS organism=XENOPUS LAEVIS DNA sequence DA(I1):DT(J292) DT(I2):DA(J291) DC(I3):DG(J290) DA(I4):DT(J289) DA(I5):DT(J288) DT(I6):DA(J287) DA(I7):DT(J286) DT(I8):DA(J285) DC(I9):DG(J284) DC(I10):DG(J283) DA(I11):DT(J282) DC(I12):DG(J281) DC(I13):DG(J280) DT(I14):DA(J279) DG(I15):DC(J278) DC(I16):DG(J277) DA(I17):DT(J276) DG(I18):DC(J275) DA(I19):DT(J274) DT(I20):DA(J273) DT(I21):DA(J272) DC(I22):DG(J271) DT(I23):DA(J270) DA(I24):DT(J269) DC(I25):DG(J268) DC(I26):DG(J267) DA(I27):DT(J266) DA(I28):DT(J265) DA(I29):DT(J264) DA(I30):DT(J263) DG(I31):DC(J262) DT(I32):DA(J261) DG(I33):DC(J260) DT(I34):DA(J259) DA(I35):DT(J258) DT(I36):DA(J257) DT(I37):DA(J256) DT(I38):DA(J255) DG(I39):DC(J254) DG(I40):DC(J253) DA(I41):DT(J252) DA(I42):DT(J251) DA(I43):DT(J250) DC(I44):DG(J249) DT(I45):DA(J248) DG(I46):DC(J247) DC(I47):DG(J246) DT(I48):DA(J245) DC(I49):DG(J244) DC(I50):DG(J243) DA(I51):DT(J242) DT(I52):DA(J241) DC(I53):DG(J240) DA(I54):DT(J239) DA(I55):DT(J238) DA(I56):DT(J237) DA(I57):DT(J236) DG(I58):DC(J235) DG(I59):DC(J234) DC(I60):DG(J233) DA(I61):DT(J232) DT(I62):DA(J231) DG(I63):DC(J230) DT(I64):DA(J229) DT(I65):DA(J228) DC(I66):DG(J227) DA(I67):DT(J226) DG(I68):DC(J225) DC(I69):DG(J224) DG(I70):DC(J223) DG(I71):DC(J222) DA(I72):DT(J221) DA(I73):DT(J220) DT(I74):DA(J219) DT(I75):DA(J218) DC(I76):DG(J217) DC(I77):DG(J216) DG(I78):DC(J215) DC(I79):DG(J214) DT(I80):DA(J213) DG(I81):DC(J212) DA(I82):DT(J211) DA(I83):DT(J210) DC(I84):DG(J209) DA(I85):DT(J208) DT(I86):DA(J207) DG(I87):DC(J206) DC(I88):DG(J205) DC(I89):DG(J204) DT(I90):DA(J203) DT(I91):DA(J202) DT(I92):DA(J201) DT(I93):DA(J200) DG(I94):DC(J199) DA(I95):DT(J198) DT(I96):DA(J197) DG(I97):DC(J196) DG(I98):DC(J195) DA(I99):DT(J194) DG(I100):DC(J193) DC(I101):DG(J192) DA(I102):DT(J191) DG(I103):DC(J190) DT(I104):DA(J189) DT(I105):DA(J188) DT(I106):DA(J187) DC(I107):DG(J186) DC(I108):DG(J185) DA(I109):DT(J184) DA(I110):DT(J183) DA(I111):DT(J182) DT(I112):DA(J181) DA(I113):DT(J180) DC(I114):DG(J179) DA(I115):DT(J178) DC(I116):DG(J177) DT(I117):DA(J176) DT(I118):DA(J175) DT(I119):DA(J174) DT(I120):DA(J173) DG(I121):DC(J172) DG(I122):DC(J171) DT(I123):DA(J170) DA(I124):DT(J169) DG(I125):DC(J168) DA(I126):DT(J167) DA(I127):DT(J166) DT(I128):DA(J165) DC(I129):DG(J164) DT(I130):DA(J163) DG(I131):DC(J162) DC(I132):DG(J161) DA(I133):DT(J160) DG(I134):DC(J159) DG(I135):DC(J158) DT(I136):DA(J157) DG(I137):DC(J156) DG(I138):DC(J155) DA(I139):DT(J154) DT(I140):DA(J153) DA(I141):DT(J152) DT(I142):DA(J151) DT(I143):DA(J150) DG(I144):DC(J149) DA(I145):DT(J148) DT(I146):DA(J147) chainA ( 3) HIS439 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 ( 4) ARG440 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) LEU465 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB chainC chainD chainE ( 3) HIS639 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 4) ARG640 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) LEU665 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainF ( 12) PRO232 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainG chainH ( 3) ARG1430 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence kpHRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlrfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera/rdNIqgitkpairrlarrggvkcisgliYeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/ktRSsraglqfpvgrvhrllrkgnyaerVgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpk/esYAiyvykvlkqvhpdtgisskamsimNsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak/kpHRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlrfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera/vlrdniqgitkPairrlarrggvkcisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/kaktrssraglQfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk/ksRkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak >1p3g_ABCDEFGH:Histone-fold;lambda_repressor-like_DNA-binding_domains;p53-like_transcription_factors;Nucleic_acid-binding_proteins;P-loop_containing_nucleoside_triphosphate_hydrolases; title=CRYSTALLOGRAPHIC STUDIES OF NUCLEOSOME CORE PARTICLES CONTAINING HISTONE 'SIN' MUTANTS organism=XENOPUS LAEVIS DNA sequence DA(J147):DT(I146) DT(J148):DA(I145) DC(J149):DG(I144) DA(J150):DT(I143) DA(J151):DT(I142) DT(J152):DA(I141) DA(J153):DT(I140) DT(J154):DA(I139) DC(J155):DG(I138) DC(J156):DG(I137) DA(J157):DT(I136) DC(J158):DG(I135) DC(J159):DG(I134) DT(J160):DA(I133) DG(J161):DC(I132) DC(J162):DG(I131) DA(J163):DT(I130) DG(J164):DC(I129) DA(J165):DT(I128) DT(J166):DA(I127) DT(J167):DA(I126) DC(J168):DG(I125) DT(J169):DA(I124) DA(J170):DT(I123) DC(J171):DG(I122) DC(J172):DG(I121) DA(J173):DT(I120) DA(J174):DT(I119) DA(J175):DT(I118) DA(J176):DT(I117) DG(J177):DC(I116) DT(J178):DA(I115) DG(J179):DC(I114) DT(J180):DA(I113) DA(J181):DT(I112) DT(J182):DA(I111) DT(J183):DA(I110) DT(J184):DA(I109) DG(J185):DC(I108) DG(J186):DC(I107) DA(J187):DT(I106) DA(J188):DT(I105) DA(J189):DT(I104) DC(J190):DG(I103) DT(J191):DA(I102) DG(J192):DC(I101) DC(J193):DG(I100) DT(J194):DA(I99) DC(J195):DG(I98) DC(J196):DG(I97) DA(J197):DT(I96) DT(J198):DA(I95) DC(J199):DG(I94) DA(J200):DT(I93) DA(J201):DT(I92) DA(J202):DT(I91) DA(J203):DT(I90) DG(J204):DC(I89) DG(J205):DC(I88) DC(J206):DG(I87) DA(J207):DT(I86) DT(J208):DA(I85) DG(J209):DC(I84) DT(J210):DA(I83) DT(J211):DA(I82) DC(J212):DG(I81) DA(J213):DT(I80) DG(J214):DC(I79) DC(J215):DG(I78) DG(J216):DC(I77) DG(J217):DC(I76) DA(J218):DT(I75) DA(J219):DT(I74) DT(J220):DA(I73) DT(J221):DA(I72) DC(J222):DG(I71) DC(J223):DG(I70) DG(J224):DC(I69) DC(J225):DG(I68) DT(J226):DA(I67) DG(J227):DC(I66) DA(J228):DT(I65) DA(J229):DT(I64) DC(J230):DG(I63) DA(J231):DT(I62) DT(J232):DA(I61) DG(J233):DC(I60) DC(J234):DG(I59) DC(J235):DG(I58) DT(J236):DA(I57) DT(J237):DA(I56) DT(J238):DA(I55) DT(J239):DA(I54) DG(J240):DC(I53) DA(J241):DT(I52) DT(J242):DA(I51) DG(J243):DC(I50) DG(J244):DC(I49) DA(J245):DT(I48) DG(J246):DC(I47) DC(J247):DG(I46) DA(J248):DT(I45) DG(J249):DC(I44) DT(J250):DA(I43) DT(J251):DA(I42) DT(J252):DA(I41) DC(J253):DG(I40) DC(J254):DG(I39) DA(J255):DT(I38) DA(J256):DT(I37) DA(J257):DT(I36) DT(J258):DA(I35) DA(J259):DT(I34) DC(J260):DG(I33) DA(J261):DT(I32) DC(J262):DG(I31) DT(J263):DA(I30) DT(J264):DA(I29) DT(J265):DA(I28) DT(J266):DA(I27) DG(J267):DC(I26) DG(J268):DC(I25) DT(J269):DA(I24) DA(J270):DT(I23) DG(J271):DC(I22) DA(J272):DT(I21) DA(J273):DT(I20) DT(J274):DA(I19) DC(J275):DG(I18) DT(J276):DA(I17) DG(J277):DC(I16) DC(J278):DG(I15) DA(J279):DT(I14) DG(J280):DC(I13) DG(J281):DC(I12) DT(J282):DA(I11) DG(J283):DC(I10) DG(J284):DC(I9) DA(J285):DT(I8) DT(J286):DA(I7) DA(J287):DT(I6) DT(J288):DA(I5) DT(J289):DA(I4) DG(J290):DC(I3) DA(J291):DT(I2) DT(J292):DA(I1) chainA ( 3) ARG440 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 4) TYR441 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) LEU465 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) ARG483 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB chainC chainD chainE ( 3) ARG640 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) LEU665 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) ARG683 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainF ( 17) PRO232 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainG chainH prot.sequence phRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera/dnIQgitkpairrlarrggvkeisgliYeetrgvlkvflenvirdAvtytehakrktvtamdvvyalkrqgrtlygfgg/akTRssraglqfpvgrvhrllrkgnyaErvgagapvylaavleylTaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllp/rkESyaiyvykvlkqvhpdtgisskamSimnsfvndvferiageaSrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak/phRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera/krhrkvlrdniqgitkPairrlarrggvkeisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/akaktrssraglqfpvGrvhrllrkgnyaervgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk/kesyaiyvykvlkqvhPdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak >1p3i_ABCDEFGH:Histone-fold;lambda_repressor-like_DNA-binding_domains;p53-like_transcription_factors;Nucleic_acid-binding_proteins;P-loop_containing_nucleoside_triphosphate_hydrolases; title=CRYSTALLOGRAPHIC STUDIES OF NUCLEOSOME CORE PARTICLES CONTAINING HISTONE 'SIN' MUTANTS organism=XENOPUS LAEVIS DNA sequence DA(J147):DT(I146) DT(J148):DA(I145) DC(J149):DG(I144) DA(J150):DT(I143) DA(J151):DT(I142) DT(J152):DA(I141) DA(J153):DT(I140) DT(J154):DA(I139) DC(J155):DG(I138) DC(J156):DG(I137) DA(J157):DT(I136) DC(J158):DG(I135) DC(J159):DG(I134) DT(J160):DA(I133) DG(J161):DC(I132) DC(J162):DG(I131) DA(J163):DT(I130) DG(J164):DC(I129) DA(J165):DT(I128) DT(J166):DA(I127) DT(J167):DA(I126) DC(J168):DG(I125) DT(J169):DA(I124) DA(J170):DT(I123) DC(J171):DG(I122) DC(J172):DG(I121) DA(J173):DT(I120) DA(J174):DT(I119) DA(J175):DT(I118) DA(J176):DT(I117) DG(J177):DC(I116) DT(J178):DA(I115) DG(J179):DC(I114) DT(J180):DA(I113) DA(J181):DT(I112) DT(J182):DA(I111) DT(J183):DA(I110) DT(J184):DA(I109) DG(J185):DC(I108) DG(J186):DC(I107) DA(J187):DT(I106) DA(J188):DT(I105) DA(J189):DT(I104) DC(J190):DG(I103) DT(J191):DA(I102) DG(J192):DC(I101) DC(J193):DG(I100) DT(J194):DA(I99) DC(J195):DG(I98) DC(J196):DG(I97) DA(J197):DT(I96) DT(J198):DA(I95) DC(J199):DG(I94) DA(J200):DT(I93) DA(J201):DT(I92) DA(J202):DT(I91) DA(J203):DT(I90) DG(J204):DC(I89) DG(J205):DC(I88) DC(J206):DG(I87) DA(J207):DT(I86) DT(J208):DA(I85) DG(J209):DC(I84) DT(J210):DA(I83) DT(J211):DA(I82) DC(J212):DG(I81) DA(J213):DT(I80) DG(J214):DC(I79) DC(J215):DG(I78) DG(J216):DC(I77) DG(J217):DC(I76) DA(J218):DT(I75) DA(J219):DT(I74) DT(J220):DA(I73) DT(J221):DA(I72) DC(J222):DG(I71) DC(J223):DG(I70) DG(J224):DC(I69) DC(J225):DG(I68) DT(J226):DA(I67) DG(J227):DC(I66) DA(J228):DT(I65) DA(J229):DT(I64) DC(J230):DG(I63) DA(J231):DT(I62) DT(J232):DA(I61) DG(J233):DC(I60) DC(J234):DG(I59) DC(J235):DG(I58) DT(J236):DA(I57) DT(J237):DA(I56) DT(J238):DA(I55) DT(J239):DA(I54) DG(J240):DC(I53) DA(J241):DT(I52) DT(J242):DA(I51) DG(J243):DC(I50) DG(J244):DC(I49) DA(J245):DT(I48) DG(J246):DC(I47) DC(J247):DG(I46) DA(J248):DT(I45) DG(J249):DC(I44) DT(J250):DA(I43) DT(J251):DA(I42) DT(J252):DA(I41) DC(J253):DG(I40) DC(J254):DG(I39) DA(J255):DT(I38) DA(J256):DT(I37) DA(J257):DT(I36) DT(J258):DA(I35) DA(J259):DT(I34) DC(J260):DG(I33) DA(J261):DT(I32) DC(J262):DG(I31) DT(J263):DA(I30) DT(J264):DA(I29) DT(J265):DA(I28) DT(J266):DA(I27) DG(J267):DC(I26) DG(J268):DC(I25) DT(J269):DA(I24) DA(J270):DT(I23) DG(J271):DC(I22) DA(J272):DT(I21) DA(J273):DT(I20) DT(J274):DA(I19) DC(J275):DG(I18) DT(J276):DA(I17) DG(J277):DC(I16) DC(J278):DG(I15) DA(J279):DT(I14) DG(J280):DC(I13) DG(J281):DC(I12) DT(J282):DA(I11) DG(J283):DC(I10) DG(J284):DC(I9) DA(J285):DT(I8) DT(J286):DA(I7) DA(J287):DT(I6) DT(J288):DA(I5) DT(J289):DA(I4) DG(J290):DC(I3) DA(J291):DT(I2) DT(J292):DA(I1) chainA ( 2) HIS439 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 3) ARG440 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) LEU465 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) ARG483 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB chainC ( 28) ARG842 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainD ( 3) ARG1230 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainE ( 9) ARG640 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 10) TYR641 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 34) LEU665 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 52) ARG683 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainF ( 9) PRO232 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainG chainH ( 2) ARG1430 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence pHRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera/dNIqgitkpairrlarrggvkhisgliYeetrgvlkvflenvirdAvtytehakrktvtamdvvyalkrqgrtlygfgg/ktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllp/ksRkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak/tgeskkphRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera/dniqgitkPairrlarrggvkhisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/trssraglQfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk/sRkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak >1p3k_ABCDEFGH:Histone-fold;lambda_repressor-like_DNA-binding_domains;p53-like_transcription_factors;Nucleic_acid-binding_proteins;P-loop_containing_nucleoside_triphosphate_hydrolases; title=CRYSTALLOGRAPHIC STUDIES OF NUCLEOSOME CORE PARTICLES CONTAINING HISTONE 'SIN' MUTANTS organism=XENOPUS LAEVIS DNA sequence DA(I1):DT(J292) DT(I2):DA(J291) DC(I3):DG(J290) DA(I4):DT(J289) DA(I5):DT(J288) DT(I6):DA(J287) DA(I7):DT(J286) DT(I8):DA(J285) DC(I9):DG(J284) DC(I10):DG(J283) DA(I11):DT(J282) DC(I12):DG(J281) DC(I13):DG(J280) DT(I14):DA(J279) DG(I15):DC(J278) DC(I16):DG(J277) DA(I17):DT(J276) DG(I18):DC(J275) DA(I19):DT(J274) DT(I20):DA(J273) DT(I21):DA(J272) DC(I22):DG(J271) DT(I23):DA(J270) DA(I24):DT(J269) DC(I25):DG(J268) DC(I26):DG(J267) DA(I27):DT(J266) DA(I28):DT(J265) DA(I29):DT(J264) DA(I30):DT(J263) DG(I31):DC(J262) DT(I32):DA(J261) DG(I33):DC(J260) DT(I34):DA(J259) DA(I35):DT(J258) DT(I36):DA(J257) DT(I37):DA(J256) DT(I38):DA(J255) DG(I39):DC(J254) DG(I40):DC(J253) DA(I41):DT(J252) DA(I42):DT(J251) DA(I43):DT(J250) DC(I44):DG(J249) DT(I45):DA(J248) DG(I46):DC(J247) DC(I47):DG(J246) DT(I48):DA(J245) DC(I49):DG(J244) DC(I50):DG(J243) DA(I51):DT(J242) DT(I52):DA(J241) DC(I53):DG(J240) DA(I54):DT(J239) DA(I55):DT(J238) DA(I56):DT(J237) DA(I57):DT(J236) DG(I58):DC(J235) DG(I59):DC(J234) DC(I60):DG(J233) DA(I61):DT(J232) DT(I62):DA(J231) DG(I63):DC(J230) DT(I64):DA(J229) DT(I65):DA(J228) DC(I66):DG(J227) DA(I67):DT(J226) DG(I68):DC(J225) DC(I69):DG(J224) DG(I70):DC(J223) DG(I71):DC(J222) DA(I72):DT(J221) DA(I73):DT(J220) DT(I74):DA(J219) DT(I75):DA(J218) DC(I76):DG(J217) DC(I77):DG(J216) DG(I78):DC(J215) DC(I79):DG(J214) DT(I80):DA(J213) DG(I81):DC(J212) DA(I82):DT(J211) DA(I83):DT(J210) DC(I84):DG(J209) DA(I85):DT(J208) DT(I86):DA(J207) DG(I87):DC(J206) DC(I88):DG(J205) DC(I89):DG(J204) DT(I90):DA(J203) DT(I91):DA(J202) DT(I92):DA(J201) DT(I93):DA(J200) DG(I94):DC(J199) DA(I95):DT(J198) DT(I96):DA(J197) DG(I97):DC(J196) DG(I98):DC(J195) DA(I99):DT(J194) DG(I100):DC(J193) DC(I101):DG(J192) DA(I102):DT(J191) DG(I103):DC(J190) DT(I104):DA(J189) DT(I105):DA(J188) DT(I106):DA(J187) DC(I107):DG(J186) DC(I108):DG(J185) DA(I109):DT(J184) DA(I110):DT(J183) DA(I111):DT(J182) DT(I112):DA(J181) DA(I113):DT(J180) DC(I114):DG(J179) DA(I115):DT(J178) DC(I116):DG(J177) DT(I117):DA(J176) DT(I118):DA(J175) DT(I119):DA(J174) DT(I120):DA(J173) DG(I121):DC(J172) DG(I122):DC(J171) DT(I123):DA(J170) DA(I124):DT(J169) DG(I125):DC(J168) DA(I126):DT(J167) DA(I127):DT(J166) DT(I128):DA(J165) DC(I129):DG(J164) DT(I130):DA(J163) DG(I131):DC(J162) DC(I132):DG(J161) DA(I133):DT(J160) DG(I134):DC(J159) DG(I135):DC(J158) DT(I136):DA(J157) DG(I137):DC(J156) DG(I138):DC(J155) DA(I139):DT(J154) DT(I140):DA(J153) DA(I141):DT(J152) DT(I142):DA(J151) DT(I143):DA(J150) DG(I144):DC(J149) DA(I145):DT(J148) DT(I146):DA(J147) chainA ( 2) ARG440 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 27) LEU465 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 45) ARG483 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB chainC chainD chainE ( 3) HIS639 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 4) ARG640 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) LEU665 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 47) ARG683 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainF ( 11) PRO232 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 14) ARG235 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 24) ARG245 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainG ( 29) ARG1042 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainH prot.sequence hRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvaimpkdiqlarrirgera/dNiqgitkpairrlarrggvkrisglIyeetrgvlkvflenvirDavtytehakrktvtamdvvyalkrqgrtlygfgg/kTrssraglqfpvgrvhrllrkgnyaErvgagapvylaavleylTaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt/kEsyaiyvykvlkqvhpdtgisskamSimnsfvndvferiageaSrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak/kpHRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvaimpkdiqlarrirgera/lrdniqgitkPaiRrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/aktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk/srkesyaiyvykvlkqvhpdtgisskamSimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak >1p3k_G:Histone-fold; title=CRYSTALLOGRAPHIC STUDIES OF NUCLEOSOME CORE PARTICLES CONTAINING HISTONE 'SIN' MUTANTS organism=? DNA sequence DA(J147):DT(I146) DT(J148):DA(I145) DC(J149):DG(I144) DA(J150):DT(I143) DA(J151):DT(I142) DT(J152):DA(I141) DA(J153):DT(I140) DT(J154):DA(I139) DC(J155):DG(I138) DC(J156):DG(I137) DA(J157):DT(I136) DC(J158):DG(I135) DC(J159):DG(I134) DT(J160):DA(I133) DG(J161):DC(I132) DC(J162):DG(I131) DA(J163):DT(I130) DG(J164):DC(I129) DA(J165):DT(I128) DT(J166):DA(I127) DT(J167):DA(I126) DC(J168):DG(I125) DT(J169):DA(I124) DA(J170):DT(I123) DC(J171):DG(I122) DC(J172):DG(I121) DA(J173):DT(I120) DA(J174):DT(I119) DA(J175):DT(I118) DA(J176):DT(I117) DG(J177):DC(I116) DT(J178):DA(I115) DG(J179):DC(I114) DT(J180):DA(I113) DA(J181):DT(I112) DT(J182):DA(I111) DT(J183):DA(I110) DT(J184):DA(I109) DG(J185):DC(I108) DG(J186):DC(I107) DA(J187):DT(I106) DA(J188):DT(I105) DA(J189):DT(I104) DC(J190):DG(I103) DT(J191):DA(I102) DG(J192):DC(I101) DC(J193):DG(I100) DT(J194):DA(I99) DC(J195):DG(I98) DC(J196):DG(I97) DA(J197):DT(I96) DT(J198):DA(I95) DC(J199):DG(I94) DA(J200):DT(I93) DA(J201):DT(I92) DA(J202):DT(I91) DA(J203):DT(I90) DG(J204):DC(I89) DG(J205):DC(I88) DC(J206):DG(I87) DA(J207):DT(I86) DT(J208):DA(I85) DG(J209):DC(I84) DT(J210):DA(I83) DT(J211):DA(I82) DC(J212):DG(I81) DA(J213):DT(I80) DG(J214):DC(I79) DC(J215):DG(I78) DG(J216):DC(I77) DG(J217):DC(I76) DA(J218):DT(I75) DA(J219):DT(I74) DT(J220):DA(I73) DT(J221):DA(I72) DC(J222):DG(I71) DC(J223):DG(I70) DG(J224):DC(I69) DC(J225):DG(I68) DT(J226):DA(I67) DG(J227):DC(I66) DA(J228):DT(I65) DA(J229):DT(I64) DC(J230):DG(I63) DA(J231):DT(I62) DT(J232):DA(I61) DG(J233):DC(I60) DC(J234):DG(I59) DC(J235):DG(I58) DT(J236):DA(I57) DT(J237):DA(I56) DT(J238):DA(I55) DT(J239):DA(I54) DG(J240):DC(I53) DA(J241):DT(I52) DT(J242):DA(I51) DG(J243):DC(I50) DG(J244):DC(I49) DA(J245):DT(I48) DG(J246):DC(I47) DC(J247):DG(I46) DA(J248):DT(I45) DG(J249):DC(I44) DT(J250):DA(I43) DT(J251):DA(I42) DT(J252):DA(I41) DC(J253):DG(I40) DC(J254):DG(I39) DA(J255):DT(I38) DA(J256):DT(I37) DA(J257):DT(I36) DT(J258):DA(I35) DA(J259):DT(I34) DC(J260):DG(I33) DA(J261):DT(I32) DC(J262):DG(I31) DT(J263):DA(I30) DT(J264):DA(I29) DT(J265):DA(I28) DT(J266):DA(I27) DG(J267):DC(I26) DG(J268):DC(I25) DT(J269):DA(I24) DA(J270):DT(I23) DG(J271):DC(I22) DA(J272):DT(I21) DA(J273):DT(I20) DT(J274):DA(I19) DC(J275):DG(I18) DT(J276):DA(I17) DG(J277):DC(I16) DC(J278):DG(I15) DA(J279):DT(I14) DG(J280):DC(I13) DG(J281):DC(I12) DT(J282):DA(I11) DG(J283):DC(I10) DG(J284):DC(I9) DA(J285):DT(I8) DT(J286):DA(I7) DA(J287):DT(I6) DT(J288):DA(I5) DT(J289):DA(I4) DG(J290):DC(I3) DA(J291):DT(I2) DT(J292):DA(I1) chainG ( 29) ARG1042 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence aktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk >1p3l_A:Histone-fold; title=CRYSTALLOGRAPHIC STUDIES OF NUCLEOSOME CORE PARTICLES CONTAINING HISTONE 'SIN' MUTANTS organism=XENOPUS LAEVIS DNA sequence DA(I1):DT(J292) DT(I2):DA(J291) DC(I3):DG(J290) DA(I4):DT(J289) DA(I5):DT(J288) DT(I6):DA(J287) DA(I7):DT(J286) DT(I8):DA(J285) DC(I9):DG(J284) DC(I10):DG(J283) DA(I11):DT(J282) DC(I12):DG(J281) DC(I13):DG(J280) DT(I14):DA(J279) DG(I15):DC(J278) DC(I16):DG(J277) DA(I17):DT(J276) DG(I18):DC(J275) DA(I19):DT(J274) DT(I20):DA(J273) DT(I21):DA(J272) DC(I22):DG(J271) DT(I23):DA(J270) DA(I24):DT(J269) DC(I25):DG(J268) DC(I26):DG(J267) DA(I27):DT(J266) DA(I28):DT(J265) DA(I29):DT(J264) DA(I30):DT(J263) DG(I31):DC(J262) DT(I32):DA(J261) DG(I33):DC(J260) DT(I34):DA(J259) DA(I35):DT(J258) DT(I36):DA(J257) DT(I37):DA(J256) DT(I38):DA(J255) DG(I39):DC(J254) DG(I40):DC(J253) DA(I41):DT(J252) DA(I42):DT(J251) DA(I43):DT(J250) DC(I44):DG(J249) DT(I45):DA(J248) DG(I46):DC(J247) DC(I47):DG(J246) DT(I48):DA(J245) DC(I49):DG(J244) DC(I50):DG(J243) DA(I51):DT(J242) DT(I52):DA(J241) DC(I53):DG(J240) DA(I54):DT(J239) DA(I55):DT(J238) DA(I56):DT(J237) DA(I57):DT(J236) DG(I58):DC(J235) DG(I59):DC(J234) DC(I60):DG(J233) DA(I61):DT(J232) DT(I62):DA(J231) DG(I63):DC(J230) DT(I64):DA(J229) DT(I65):DA(J228) DC(I66):DG(J227) DA(I67):DT(J226) DG(I68):DC(J225) DC(I69):DG(J224) DG(I70):DC(J223) DG(I71):DC(J222) DA(I72):DT(J221) DA(I73):DT(J220) DT(I74):DA(J219) DT(I75):DA(J218) DC(I76):DG(J217) DC(I77):DG(J216) DG(I78):DC(J215) DC(I79):DG(J214) DT(I80):DA(J213) DG(I81):DC(J212) DA(I82):DT(J211) DA(I83):DT(J210) DC(I84):DG(J209) DA(I85):DT(J208) DT(I86):DA(J207) DG(I87):DC(J206) DC(I88):DG(J205) DC(I89):DG(J204) DT(I90):DA(J203) DT(I91):DA(J202) DT(I92):DA(J201) DT(I93):DA(J200) DG(I94):DC(J199) DA(I95):DT(J198) DT(I96):DA(J197) DG(I97):DC(J196) DG(I98):DC(J195) DA(I99):DT(J194) DG(I100):DC(J193) DC(I101):DG(J192) DA(I102):DT(J191) DG(I103):DC(J190) DT(I104):DA(J189) DT(I105):DA(J188) DT(I106):DA(J187) DC(I107):DG(J186) DC(I108):DG(J185) DA(I109):DT(J184) DA(I110):DT(J183) DA(I111):DT(J182) DT(I112):DA(J181) DA(I113):DT(J180) DC(I114):DG(J179) DA(I115):DT(J178) DC(I116):DG(J177) DT(I117):DA(J176) DT(I118):DA(J175) DT(I119):DA(J174) DT(I120):DA(J173) DG(I121):DC(J172) DG(I122):DC(J171) DT(I123):DA(J170) DA(I124):DT(J169) DG(I125):DC(J168) DA(I126):DT(J167) DA(I127):DT(J166) DT(I128):DA(J165) DC(I129):DG(J164) DT(I130):DA(J163) DG(I131):DC(J162) DC(I132):DG(J161) DA(I133):DT(J160) DG(I134):DC(J159) DG(I135):DC(J158) DT(I136):DA(J157) DG(I137):DC(J156) DG(I138):DC(J155) DA(I139):DT(J154) DT(I140):DA(J153) DA(I141):DT(J152) DT(I142):DA(J151) DT(I143):DA(J150) DG(I144):DC(J149) DA(I145):DT(J148) DT(I146):DA(J147) chainA ( 3) ARG440 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) LEU465 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) ARG483 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence phRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvhimpkdiqlarrirgera >1p3l_ABCDEFGH:Histone-fold;lambda_repressor-like_DNA-binding_domains;p53-like_transcription_factors;Nucleic_acid-binding_proteins;P-loop_containing_nucleoside_triphosphate_hydrolases; title=CRYSTALLOGRAPHIC STUDIES OF NUCLEOSOME CORE PARTICLES CONTAINING HISTONE 'SIN' MUTANTS organism=XENOPUS LAEVIS DNA sequence DA(I1):DT(J292) DT(I2):DA(J291) DC(I3):DG(J290) DA(I4):DT(J289) DA(I5):DT(J288) DT(I6):DA(J287) DA(I7):DT(J286) DT(I8):DA(J285) DC(I9):DG(J284) DC(I10):DG(J283) DA(I11):DT(J282) DC(I12):DG(J281) DC(I13):DG(J280) DT(I14):DA(J279) DG(I15):DC(J278) DC(I16):DG(J277) DA(I17):DT(J276) DG(I18):DC(J275) DA(I19):DT(J274) DT(I20):DA(J273) DT(I21):DA(J272) DC(I22):DG(J271) DT(I23):DA(J270) DA(I24):DT(J269) DC(I25):DG(J268) DC(I26):DG(J267) DA(I27):DT(J266) DA(I28):DT(J265) DA(I29):DT(J264) DA(I30):DT(J263) DG(I31):DC(J262) DT(I32):DA(J261) DG(I33):DC(J260) DT(I34):DA(J259) DA(I35):DT(J258) DT(I36):DA(J257) DT(I37):DA(J256) DT(I38):DA(J255) DG(I39):DC(J254) DG(I40):DC(J253) DA(I41):DT(J252) DA(I42):DT(J251) DA(I43):DT(J250) DC(I44):DG(J249) DT(I45):DA(J248) DG(I46):DC(J247) DC(I47):DG(J246) DT(I48):DA(J245) DC(I49):DG(J244) DC(I50):DG(J243) DA(I51):DT(J242) DT(I52):DA(J241) DC(I53):DG(J240) DA(I54):DT(J239) DA(I55):DT(J238) DA(I56):DT(J237) DA(I57):DT(J236) DG(I58):DC(J235) DG(I59):DC(J234) DC(I60):DG(J233) DA(I61):DT(J232) DT(I62):DA(J231) DG(I63):DC(J230) DT(I64):DA(J229) DT(I65):DA(J228) DC(I66):DG(J227) DA(I67):DT(J226) DG(I68):DC(J225) DC(I69):DG(J224) DG(I70):DC(J223) DG(I71):DC(J222) DA(I72):DT(J221) DA(I73):DT(J220) DT(I74):DA(J219) DT(I75):DA(J218) DC(I76):DG(J217) DC(I77):DG(J216) DG(I78):DC(J215) DC(I79):DG(J214) DT(I80):DA(J213) DG(I81):DC(J212) DA(I82):DT(J211) DA(I83):DT(J210) DC(I84):DG(J209) DA(I85):DT(J208) DT(I86):DA(J207) DG(I87):DC(J206) DC(I88):DG(J205) DC(I89):DG(J204) DT(I90):DA(J203) DT(I91):DA(J202) DT(I92):DA(J201) DT(I93):DA(J200) DG(I94):DC(J199) DA(I95):DT(J198) DT(I96):DA(J197) DG(I97):DC(J196) DG(I98):DC(J195) DA(I99):DT(J194) DG(I100):DC(J193) DC(I101):DG(J192) DA(I102):DT(J191) DG(I103):DC(J190) DT(I104):DA(J189) DT(I105):DA(J188) DT(I106):DA(J187) DC(I107):DG(J186) DC(I108):DG(J185) DA(I109):DT(J184) DA(I110):DT(J183) DA(I111):DT(J182) DT(I112):DA(J181) DA(I113):DT(J180) DC(I114):DG(J179) DA(I115):DT(J178) DC(I116):DG(J177) DT(I117):DA(J176) DT(I118):DA(J175) DT(I119):DA(J174) DT(I120):DA(J173) DG(I121):DC(J172) DG(I122):DC(J171) DT(I123):DA(J170) DA(I124):DT(J169) DG(I125):DC(J168) DA(I126):DT(J167) DA(I127):DT(J166) DT(I128):DA(J165) DC(I129):DG(J164) DT(I130):DA(J163) DG(I131):DC(J162) DC(I132):DG(J161) DA(I133):DT(J160) DG(I134):DC(J159) DG(I135):DC(J158) DT(I136):DA(J157) DG(I137):DC(J156) DG(I138):DC(J155) DA(I139):DT(J154) DT(I140):DA(J153) DA(I141):DT(J152) DT(I142):DA(J151) DT(I143):DA(J150) DG(I144):DC(J149) DA(I145):DT(J148) DT(I146):DA(J147) chainA ( 3) ARG440 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) LEU465 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) ARG483 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB chainC chainD chainE ( 4) ARG640 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) LEU665 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 47) ARG683 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainF ( 13) PRO232 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainG chainH ( 3) ARG1430 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence phRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvhimpkdiqlarrirgera/dnIqgitkpairrlarrggvkrisgliYeetrgvlkvflenvirdAvtytehakrktvtamdvvyalkrqgrtlygfgg/ktRssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltAeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt/keSyaiyvykvlkqvhpdtgisskamsImnsfvndvferiageasRlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak/kphRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvhimpkdiqlarrirgera/kvlrdniqgitkPairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/rakaktrssragLqfpvgrvhrllrKgnyaervgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk/ksRkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak >1p3m_ABCDEFGH:Histone-fold;lambda_repressor-like_DNA-binding_domains;p53-like_transcription_factors;Nucleic_acid-binding_proteins;P-loop_containing_nucleoside_triphosphate_hydrolases; title=CRYSTALLOGRAPHIC STUDIES OF NUCLEOSOME CORE PARTICLES CONTAINING HISTONE 'SIN' MUTANTS organism=XENOPUS LAEVIS DNA sequence DA(I1):DT(J292) DT(I2):DA(J291) DC(I3):DG(J290) DA(I4):DT(J289) DA(I5):DT(J288) DT(I6):DA(J287) DA(I7):DT(J286) DT(I8):DA(J285) DC(I9):DG(J284) DC(I10):DG(J283) DA(I11):DT(J282) DC(I12):DG(J281) DC(I13):DG(J280) DT(I14):DA(J279) DG(I15):DC(J278) DC(I16):DG(J277) DA(I17):DT(J276) DG(I18):DC(J275) DA(I19):DT(J274) DT(I20):DA(J273) DT(I21):DA(J272) DC(I22):DG(J271) DT(I23):DA(J270) DA(I24):DT(J269) DC(I25):DG(J268) DC(I26):DG(J267) DA(I27):DT(J266) DA(I28):DT(J265) DA(I29):DT(J264) DA(I30):DT(J263) DG(I31):DC(J262) DT(I32):DA(J261) DG(I33):DC(J260) DT(I34):DA(J259) DA(I35):DT(J258) DT(I36):DA(J257) DT(I37):DA(J256) DT(I38):DA(J255) DG(I39):DC(J254) DG(I40):DC(J253) DA(I41):DT(J252) DA(I42):DT(J251) DA(I43):DT(J250) DC(I44):DG(J249) DT(I45):DA(J248) DG(I46):DC(J247) DC(I47):DG(J246) DT(I48):DA(J245) DC(I49):DG(J244) DC(I50):DG(J243) DA(I51):DT(J242) DT(I52):DA(J241) DC(I53):DG(J240) DA(I54):DT(J239) DA(I55):DT(J238) DA(I56):DT(J237) DA(I57):DT(J236) DG(I58):DC(J235) DG(I59):DC(J234) DC(I60):DG(J233) DA(I61):DT(J232) DT(I62):DA(J231) DG(I63):DC(J230) DT(I64):DA(J229) DT(I65):DA(J228) DC(I66):DG(J227) DA(I67):DT(J226) DG(I68):DC(J225) DC(I69):DG(J224) DG(I70):DC(J223) DG(I71):DC(J222) DA(I72):DT(J221) DA(I73):DT(J220) DT(I74):DA(J219) DT(I75):DA(J218) DC(I76):DG(J217) DC(I77):DG(J216) DG(I78):DC(J215) DC(I79):DG(J214) DT(I80):DA(J213) DG(I81):DC(J212) DA(I82):DT(J211) DA(I83):DT(J210) DC(I84):DG(J209) DA(I85):DT(J208) DT(I86):DA(J207) DG(I87):DC(J206) DC(I88):DG(J205) DC(I89):DG(J204) DT(I90):DA(J203) DT(I91):DA(J202) DT(I92):DA(J201) DT(I93):DA(J200) DG(I94):DC(J199) DA(I95):DT(J198) DT(I96):DA(J197) DG(I97):DC(J196) DG(I98):DC(J195) DA(I99):DT(J194) DG(I100):DC(J193) DC(I101):DG(J192) DA(I102):DT(J191) DG(I103):DC(J190) DT(I104):DA(J189) DT(I105):DA(J188) DT(I106):DA(J187) DC(I107):DG(J186) DC(I108):DG(J185) DA(I109):DT(J184) DA(I110):DT(J183) DA(I111):DT(J182) DT(I112):DA(J181) DA(I113):DT(J180) DC(I114):DG(J179) DA(I115):DT(J178) DC(I116):DG(J177) DT(I117):DA(J176) DT(I118):DA(J175) DT(I119):DA(J174) DT(I120):DA(J173) DG(I121):DC(J172) DG(I122):DC(J171) DT(I123):DA(J170) DA(I124):DT(J169) DG(I125):DC(J168) DA(I126):DT(J167) DA(I127):DT(J166) DT(I128):DA(J165) DC(I129):DG(J164) DT(I130):DA(J163) DG(I131):DC(J162) DC(I132):DG(J161) DA(I133):DT(J160) DG(I134):DC(J159) DG(I135):DC(J158) DT(I136):DA(J157) DG(I137):DC(J156) DG(I138):DC(J155) DA(I139):DT(J154) DT(I140):DA(J153) DA(I141):DT(J152) DT(I142):DA(J151) DT(I143):DA(J150) DG(I144):DC(J149) DA(I145):DT(J148) DT(I146):DA(J147) chainA ( 4) ARG440 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 5) TYR441 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 29) LEU465 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 47) ARG483 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 21) ARG45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainC ( 29) ARG842 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 64) ARG877 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainD chainE ( 3) HIS639 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 4) ARG640 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) LEU665 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 47) ARG683 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainF ( 12) PRO232 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) ARG245 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainG chainH prot.sequence kphRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrviimpkdiqlarrirgera/niqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/aktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktRiiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt/kesyaiyvykvlkqvhpdtgisskamsiMnsfvndvferiageasrlahynkrstitsreiqtAvrlllpgelakhavsegtkavtkytsak/kpHRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrviimpkdiqlarrirgera/vlrdniqgitkPairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/ktrssraglqfPvgrvhrllrkgnYaervgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk/esyaiyvykvlKqvhpdtgisskaMsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak >1p3o_A:Histone-fold; title=CRYSTALLOGRAPHIC STUDIES OF NUCLEOSOME CORE PARTICLES CONTAINING HISTONE 'SIN' MUTANTS organism=XENOPUS LAEVIS DNA sequence DA(I1):DT(J292) DT(I2):DA(J291) DC(I3):DG(J290) DA(I4):DT(J289) DA(I5):DT(J288) DT(I6):DA(J287) DA(I7):DT(J286) DT(I8):DA(J285) DC(I9):DG(J284) DC(I10):DG(J283) DA(I11):DT(J282) DC(I12):DG(J281) DC(I13):DG(J280) DT(I14):DA(J279) DG(I15):DC(J278) DC(I16):DG(J277) DA(I17):DT(J276) DG(I18):DC(J275) DA(I19):DT(J274) DT(I20):DA(J273) DT(I21):DA(J272) DC(I22):DG(J271) DT(I23):DA(J270) DA(I24):DT(J269) DC(I25):DG(J268) DC(I26):DG(J267) DA(I27):DT(J266) DA(I28):DT(J265) DA(I29):DT(J264) DA(I30):DT(J263) DG(I31):DC(J262) DT(I32):DA(J261) DG(I33):DC(J260) DT(I34):DA(J259) DA(I35):DT(J258) DT(I36):DA(J257) DT(I37):DA(J256) DT(I38):DA(J255) DG(I39):DC(J254) DG(I40):DC(J253) DA(I41):DT(J252) DA(I42):DT(J251) DA(I43):DT(J250) DC(I44):DG(J249) DT(I45):DA(J248) DG(I46):DC(J247) DC(I47):DG(J246) DT(I48):DA(J245) DC(I49):DG(J244) DC(I50):DG(J243) DA(I51):DT(J242) DT(I52):DA(J241) DC(I53):DG(J240) DA(I54):DT(J239) DA(I55):DT(J238) DA(I56):DT(J237) DA(I57):DT(J236) DG(I58):DC(J235) DG(I59):DC(J234) DC(I60):DG(J233) DA(I61):DT(J232) DT(I62):DA(J231) DG(I63):DC(J230) DT(I64):DA(J229) DT(I65):DA(J228) DC(I66):DG(J227) DA(I67):DT(J226) DG(I68):DC(J225) DC(I69):DG(J224) DG(I70):DC(J223) DG(I71):DC(J222) DA(I72):DT(J221) DA(I73):DT(J220) DT(I74):DA(J219) DT(I75):DA(J218) DC(I76):DG(J217) DC(I77):DG(J216) DG(I78):DC(J215) DC(I79):DG(J214) DT(I80):DA(J213) DG(I81):DC(J212) DA(I82):DT(J211) DA(I83):DT(J210) DC(I84):DG(J209) DA(I85):DT(J208) DT(I86):DA(J207) DG(I87):DC(J206) DC(I88):DG(J205) DC(I89):DG(J204) DT(I90):DA(J203) DT(I91):DA(J202) DT(I92):DA(J201) DT(I93):DA(J200) DG(I94):DC(J199) DA(I95):DT(J198) DT(I96):DA(J197) DG(I97):DC(J196) DG(I98):DC(J195) DA(I99):DT(J194) DG(I100):DC(J193) DC(I101):DG(J192) DA(I102):DT(J191) DG(I103):DC(J190) DT(I104):DA(J189) DT(I105):DA(J188) DT(I106):DA(J187) DC(I107):DG(J186) DC(I108):DG(J185) DA(I109):DT(J184) DA(I110):DT(J183) DA(I111):DT(J182) DT(I112):DA(J181) DA(I113):DT(J180) DC(I114):DG(J179) DA(I115):DT(J178) DC(I116):DG(J177) DT(I117):DA(J176) DT(I118):DA(J175) DT(I119):DA(J174) DT(I120):DA(J173) DG(I121):DC(J172) DG(I122):DC(J171) DT(I123):DA(J170) DA(I124):DT(J169) DG(I125):DC(J168) DA(I126):DT(J167) DA(I127):DT(J166) DT(I128):DA(J165) DC(I129):DG(J164) DT(I130):DA(J163) DG(I131):DC(J162) DC(I132):DG(J161) DA(I133):DT(J160) DG(I134):DC(J159) DG(I135):DC(J158) DT(I136):DA(J157) DG(I137):DC(J156) DG(I138):DC(J155) DA(I139):DT(J154) DT(I140):DA(J153) DA(I141):DT(J152) DT(I142):DA(J151) DT(I143):DA(J150) DG(I144):DC(J149) DA(I145):DT(J148) DT(I146):DA(J147) chainA ( 3) ARG440 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 4) TYR441 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 28) LEU465 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) ARG483 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence phRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera >1p3o_ABCDEFGH:Histone-fold;lambda_repressor-like_DNA-binding_domains;p53-like_transcription_factors;Nucleic_acid-binding_proteins;P-loop_containing_nucleoside_triphosphate_hydrolases; title=CRYSTALLOGRAPHIC STUDIES OF NUCLEOSOME CORE PARTICLES CONTAINING HISTONE 'SIN' MUTANTS organism=XENOPUS LAEVIS DNA sequence DA(J147):DT(I146) DT(J148):DA(I145) DC(J149):DG(I144) DA(J150):DT(I143) DA(J151):DT(I142) DT(J152):DA(I141) DA(J153):DT(I140) DT(J154):DA(I139) DC(J155):DG(I138) DC(J156):DG(I137) DA(J157):DT(I136) DC(J158):DG(I135) DC(J159):DG(I134) DT(J160):DA(I133) DG(J161):DC(I132) DC(J162):DG(I131) DA(J163):DT(I130) DG(J164):DC(I129) DA(J165):DT(I128) DT(J166):DA(I127) DT(J167):DA(I126) DC(J168):DG(I125) DT(J169):DA(I124) DA(J170):DT(I123) DC(J171):DG(I122) DC(J172):DG(I121) DA(J173):DT(I120) DA(J174):DT(I119) DA(J175):DT(I118) DA(J176):DT(I117) DG(J177):DC(I116) DT(J178):DA(I115) DG(J179):DC(I114) DT(J180):DA(I113) DA(J181):DT(I112) DT(J182):DA(I111) DT(J183):DA(I110) DT(J184):DA(I109) DG(J185):DC(I108) DG(J186):DC(I107) DA(J187):DT(I106) DA(J188):DT(I105) DA(J189):DT(I104) DC(J190):DG(I103) DT(J191):DA(I102) DG(J192):DC(I101) DC(J193):DG(I100) DT(J194):DA(I99) DC(J195):DG(I98) DC(J196):DG(I97) DA(J197):DT(I96) DT(J198):DA(I95) DC(J199):DG(I94) DA(J200):DT(I93) DA(J201):DT(I92) DA(J202):DT(I91) DA(J203):DT(I90) DG(J204):DC(I89) DG(J205):DC(I88) DC(J206):DG(I87) DA(J207):DT(I86) DT(J208):DA(I85) DG(J209):DC(I84) DT(J210):DA(I83) DT(J211):DA(I82) DC(J212):DG(I81) DA(J213):DT(I80) DG(J214):DC(I79) DC(J215):DG(I78) DG(J216):DC(I77) DG(J217):DC(I76) DA(J218):DT(I75) DA(J219):DT(I74) DT(J220):DA(I73) DT(J221):DA(I72) DC(J222):DG(I71) DC(J223):DG(I70) DG(J224):DC(I69) DC(J225):DG(I68) DT(J226):DA(I67) DG(J227):DC(I66) DA(J228):DT(I65) DA(J229):DT(I64) DC(J230):DG(I63) DA(J231):DT(I62) DT(J232):DA(I61) DG(J233):DC(I60) DC(J234):DG(I59) DC(J235):DG(I58) DT(J236):DA(I57) DT(J237):DA(I56) DT(J238):DA(I55) DT(J239):DA(I54) DG(J240):DC(I53) DA(J241):DT(I52) DT(J242):DA(I51) DG(J243):DC(I50) DG(J244):DC(I49) DA(J245):DT(I48) DG(J246):DC(I47) DC(J247):DG(I46) DA(J248):DT(I45) DG(J249):DC(I44) DT(J250):DA(I43) DT(J251):DA(I42) DT(J252):DA(I41) DC(J253):DG(I40) DC(J254):DG(I39) DA(J255):DT(I38) DA(J256):DT(I37) DA(J257):DT(I36) DT(J258):DA(I35) DA(J259):DT(I34) DC(J260):DG(I33) DA(J261):DT(I32) DC(J262):DG(I31) DT(J263):DA(I30) DT(J264):DA(I29) DT(J265):DA(I28) DT(J266):DA(I27) DG(J267):DC(I26) DG(J268):DC(I25) DT(J269):DA(I24) DA(J270):DT(I23) DG(J271):DC(I22) DA(J272):DT(I21) DA(J273):DT(I20) DT(J274):DA(I19) DC(J275):DG(I18) DT(J276):DA(I17) DG(J277):DC(I16) DC(J278):DG(I15) DA(J279):DT(I14) DG(J280):DC(I13) DG(J281):DC(I12) DT(J282):DA(I11) DG(J283):DC(I10) DG(J284):DC(I9) DA(J285):DT(I8) DT(J286):DA(I7) DA(J287):DT(I6) DT(J288):DA(I5) DT(J289):DA(I4) DG(J290):DC(I3) DA(J291):DT(I2) DT(J292):DA(I1) chainA ( 3) ARG440 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 4) TYR441 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) LEU465 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) ARG483 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 25) ARG45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainC ( 64) ARG877 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainD chainE ( 2) ARG640 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 27) LEU665 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 45) ARG683 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainF ( 9) PRO232 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 22) ARG245 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainG ( 29) ARG1042 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainH prot.sequence phRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera/vlrdniqgitkpairrlarrggakRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/aktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaardnkktRiiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt/kesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtAvrlllpgelakhavsegtkavtkytsak/hRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera/dniqgitkPairrlarrggakRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/aktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk/kesyaiyvykvlkqvhpdtgisskamsiMnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak >1p3p_ABCDEFGH:Histone-fold;lambda_repressor-like_DNA-binding_domains;p53-like_transcription_factors;Nucleic_acid-binding_proteins;P-loop_containing_nucleoside_triphosphate_hydrolases; title=CRYSTALLOGRAPHIC STUDIES OF NUCLEOSOME CORE PARTICLES CONTAINING HISTONE 'SIN' MUTANTS organism=XENOPUS LAEVIS DNA sequence DA(J147):DT(I146) DT(J148):DA(I145) DC(J149):DG(I144) DA(J150):DT(I143) DA(J151):DT(I142) DT(J152):DA(I141) DA(J153):DT(I140) DT(J154):DA(I139) DC(J155):DG(I138) DC(J156):DG(I137) DA(J157):DT(I136) DC(J158):DG(I135) DC(J159):DG(I134) DT(J160):DA(I133) DG(J161):DC(I132) DC(J162):DG(I131) DA(J163):DT(I130) DG(J164):DC(I129) DA(J165):DT(I128) DT(J166):DA(I127) DT(J167):DA(I126) DC(J168):DG(I125) DT(J169):DA(I124) DA(J170):DT(I123) DC(J171):DG(I122) DC(J172):DG(I121) DA(J173):DT(I120) DA(J174):DT(I119) DA(J175):DT(I118) DA(J176):DT(I117) DG(J177):DC(I116) DT(J178):DA(I115) DG(J179):DC(I114) DT(J180):DA(I113) DA(J181):DT(I112) DT(J182):DA(I111) DT(J183):DA(I110) DT(J184):DA(I109) DG(J185):DC(I108) DG(J186):DC(I107) DA(J187):DT(I106) DA(J188):DT(I105) DA(J189):DT(I104) DC(J190):DG(I103) DT(J191):DA(I102) DG(J192):DC(I101) DC(J193):DG(I100) DT(J194):DA(I99) DC(J195):DG(I98) DC(J196):DG(I97) DA(J197):DT(I96) DT(J198):DA(I95) DC(J199):DG(I94) DA(J200):DT(I93) DA(J201):DT(I92) DA(J202):DT(I91) DA(J203):DT(I90) DG(J204):DC(I89) DG(J205):DC(I88) DC(J206):DG(I87) DA(J207):DT(I86) DT(J208):DA(I85) DG(J209):DC(I84) DT(J210):DA(I83) DT(J211):DA(I82) DC(J212):DG(I81) DA(J213):DT(I80) DG(J214):DC(I79) DC(J215):DG(I78) DG(J216):DC(I77) DG(J217):DC(I76) DA(J218):DT(I75) DA(J219):DT(I74) DT(J220):DA(I73) DT(J221):DA(I72) DC(J222):DG(I71) DC(J223):DG(I70) DG(J224):DC(I69) DC(J225):DG(I68) DT(J226):DA(I67) DG(J227):DC(I66) DA(J228):DT(I65) DA(J229):DT(I64) DC(J230):DG(I63) DA(J231):DT(I62) DT(J232):DA(I61) DG(J233):DC(I60) DC(J234):DG(I59) DC(J235):DG(I58) DT(J236):DA(I57) DT(J237):DA(I56) DT(J238):DA(I55) DT(J239):DA(I54) DG(J240):DC(I53) DA(J241):DT(I52) DT(J242):DA(I51) DG(J243):DC(I50) DG(J244):DC(I49) DA(J245):DT(I48) DG(J246):DC(I47) DC(J247):DG(I46) DA(J248):DT(I45) DG(J249):DC(I44) DT(J250):DA(I43) DT(J251):DA(I42) DT(J252):DA(I41) DC(J253):DG(I40) DC(J254):DG(I39) DA(J255):DT(I38) DA(J256):DT(I37) DA(J257):DT(I36) DT(J258):DA(I35) DA(J259):DT(I34) DC(J260):DG(I33) DA(J261):DT(I32) DC(J262):DG(I31) DT(J263):DA(I30) DT(J264):DA(I29) DT(J265):DA(I28) DT(J266):DA(I27) DG(J267):DC(I26) DG(J268):DC(I25) DT(J269):DA(I24) DA(J270):DT(I23) DG(J271):DC(I22) DA(J272):DT(I21) DA(J273):DT(I20) DT(J274):DA(I19) DC(J275):DG(I18) DT(J276):DA(I17) DG(J277):DC(I16) DC(J278):DG(I15) DA(J279):DT(I14) DG(J280):DC(I13) DG(J281):DC(I12) DT(J282):DA(I11) DG(J283):DC(I10) DG(J284):DC(I9) DA(J285):DT(I8) DT(J286):DA(I7) DA(J287):DT(I6) DT(J288):DA(I5) DT(J289):DA(I4) DG(J290):DC(I3) DA(J291):DT(I2) DT(J292):DA(I1) chainA ( 5) ARG440 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 6) TYR441 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 30) LEU465 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 48) ARG483 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 24) ARG45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainC ( 64) ARG877 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainD chainE ( 5) ARG640 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 6) TYR641 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 30) LEU665 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 48) ARG683 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainF ( 12) PRO232 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) ARG245 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainG chainH ( 4) ARG1430 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence kkphRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera/lrdniqgitkpairrlarrggikRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/aktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaardnkktRiiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt/rkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqTavrlllpgelakhavsegtkavtkytsak/kkphRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera/vlrdniqgitkPairrlarrggikRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/akaktrssragLqfpvgrvhrllrKgnyaervgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk/rksRkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak >1p3p_H:Histone-fold; title=CRYSTALLOGRAPHIC STUDIES OF NUCLEOSOME CORE PARTICLES CONTAINING HISTONE 'SIN' MUTANTS organism=? DNA sequence DA(I1):DT(J292) DT(I2):DA(J291) DC(I3):DG(J290) DA(I4):DT(J289) DA(I5):DT(J288) DT(I6):DA(J287) DA(I7):DT(J286) DT(I8):DA(J285) DC(I9):DG(J284) DC(I10):DG(J283) DA(I11):DT(J282) DC(I12):DG(J281) DC(I13):DG(J280) DT(I14):DA(J279) DG(I15):DC(J278) DC(I16):DG(J277) DA(I17):DT(J276) DG(I18):DC(J275) DA(I19):DT(J274) DT(I20):DA(J273) DT(I21):DA(J272) DC(I22):DG(J271) DT(I23):DA(J270) DA(I24):DT(J269) DC(I25):DG(J268) DC(I26):DG(J267) DA(I27):DT(J266) DA(I28):DT(J265) DA(I29):DT(J264) DA(I30):DT(J263) DG(I31):DC(J262) DT(I32):DA(J261) DG(I33):DC(J260) DT(I34):DA(J259) DA(I35):DT(J258) DT(I36):DA(J257) DT(I37):DA(J256) DT(I38):DA(J255) DG(I39):DC(J254) DG(I40):DC(J253) DA(I41):DT(J252) DA(I42):DT(J251) DA(I43):DT(J250) DC(I44):DG(J249) DT(I45):DA(J248) DG(I46):DC(J247) DC(I47):DG(J246) DT(I48):DA(J245) DC(I49):DG(J244) DC(I50):DG(J243) DA(I51):DT(J242) DT(I52):DA(J241) DC(I53):DG(J240) DA(I54):DT(J239) DA(I55):DT(J238) DA(I56):DT(J237) DA(I57):DT(J236) DG(I58):DC(J235) DG(I59):DC(J234) DC(I60):DG(J233) DA(I61):DT(J232) DT(I62):DA(J231) DG(I63):DC(J230) DT(I64):DA(J229) DT(I65):DA(J228) DC(I66):DG(J227) DA(I67):DT(J226) DG(I68):DC(J225) DC(I69):DG(J224) DG(I70):DC(J223) DG(I71):DC(J222) DA(I72):DT(J221) DA(I73):DT(J220) DT(I74):DA(J219) DT(I75):DA(J218) DC(I76):DG(J217) DC(I77):DG(J216) DG(I78):DC(J215) DC(I79):DG(J214) DT(I80):DA(J213) DG(I81):DC(J212) DA(I82):DT(J211) DA(I83):DT(J210) DC(I84):DG(J209) DA(I85):DT(J208) DT(I86):DA(J207) DG(I87):DC(J206) DC(I88):DG(J205) DC(I89):DG(J204) DT(I90):DA(J203) DT(I91):DA(J202) DT(I92):DA(J201) DT(I93):DA(J200) DG(I94):DC(J199) DA(I95):DT(J198) DT(I96):DA(J197) DG(I97):DC(J196) DG(I98):DC(J195) DA(I99):DT(J194) DG(I100):DC(J193) DC(I101):DG(J192) DA(I102):DT(J191) DG(I103):DC(J190) DT(I104):DA(J189) DT(I105):DA(J188) DT(I106):DA(J187) DC(I107):DG(J186) DC(I108):DG(J185) DA(I109):DT(J184) DA(I110):DT(J183) DA(I111):DT(J182) DT(I112):DA(J181) DA(I113):DT(J180) DC(I114):DG(J179) DA(I115):DT(J178) DC(I116):DG(J177) DT(I117):DA(J176) DT(I118):DA(J175) DT(I119):DA(J174) DT(I120):DA(J173) DG(I121):DC(J172) DG(I122):DC(J171) DT(I123):DA(J170) DA(I124):DT(J169) DG(I125):DC(J168) DA(I126):DT(J167) DA(I127):DT(J166) DT(I128):DA(J165) DC(I129):DG(J164) DT(I130):DA(J163) DG(I131):DC(J162) DC(I132):DG(J161) DA(I133):DT(J160) DG(I134):DC(J159) DG(I135):DC(J158) DT(I136):DA(J157) DG(I137):DC(J156) DG(I138):DC(J155) DA(I139):DT(J154) DT(I140):DA(J153) DA(I141):DT(J152) DT(I142):DA(J151) DT(I143):DA(J150) DG(I144):DC(J149) DA(I145):DT(J148) DT(I146):DA(J147) chainH ( 4) ARG1430 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence rksRkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak >1p47_A:beta-beta-alpha_zinc_fingers; title=CRYSTAL STRUCTURE OF TANDEM ZIF268 MOLECULES COMPLEXED TO DNA organism=Mus musculus DNA sequence DT(C2):DA(D63) DG(C3):DC(D62) DG(C4):DC(D61) DC(C5):DG(D60) DG(C6):DC(D59) DT(C7):DA(D58) DG(C8):DC(D57) DG(C9):DC(D56) DG(C10):DC(D55) DC(C11):DG(D54) DG(C12):DC(D53) DG(C13):DC(D52) DC(C14):DG(D51) DG(C15):DC(D50) DT(C16):DA(D49) DG(C17):DC(D48) DG(C18):DC(D47) DG(C19):DC(D46) DC(C20):DG(D45) DG(C21):DC(D44) DT(C22):DA(D43) chainA ( 17) ARG118 0 0 0 0 0 0 0 0 0 11 11 2 0 0 0 0 0 0 0 0 0 ( 19) ASP120 0 0 0 0 0 0 0 0 0 0 1 10 4 0 0 0 0 0 0 0 0 ( 20) GLU121 0 0 0 0 0 0 0 0 1 5 0 0 0 0 0 0 0 0 0 0 0 ( 23) ARG124 0 0 0 0 0 0 0 7 11 5 0 0 0 0 0 0 0 0 0 0 0 ( 45) ARG146 0 0 0 0 0 0 8 14 3 0 0 0 0 0 0 0 0 0 0 0 0 ( 47) ASP148 0 0 0 0 0 0 0 2 6 4 0 0 0 0 0 0 0 0 0 0 0 ( 48) HIS149 0 0 0 0 0 28 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 51) THR152 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 73) ARG174 0 0 0 13 13 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 75) ASP176 0 0 0 0 1 7 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 76) GLU177 0 0 1 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 79) ARG180 0 15 11 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence erpyacpvescdrrfsRsDEltRhirihtgqkpfqcricmrnfsRsDHltThirthtgekpfacdicgrkfaRsDErkRhtkihlrq >1p47_AB: title=CRYSTAL STRUCTURE OF TANDEM ZIF268 MOLECULES COMPLEXED TO DNA organism=Mus musculus DNA sequence DT(C2):DA(D63) DG(C3):DC(D62) DG(C4):DC(D61) DC(C5):DG(D60) DG(C6):DC(D59) DT(C7):DA(D58) DG(C8):DC(D57) DG(C9):DC(D56) DG(C10):DC(D55) DC(C11):DG(D54) DG(C12):DC(D53) DG(C13):DC(D52) DC(C14):DG(D51) DG(C15):DC(D50) DT(C16):DA(D49) DG(C17):DC(D48) DG(C18):DC(D47) DG(C19):DC(D46) DC(C20):DG(D45) DG(C21):DC(D44) DT(C22):DA(D43) chainA ( 17) ARG118 0 0 0 0 0 0 0 0 0 11 11 2 0 0 0 0 0 0 0 0 0 ( 19) ASP120 0 0 0 0 0 0 0 0 0 0 1 10 4 0 0 0 0 0 0 0 0 ( 20) GLU121 0 0 0 0 0 0 0 0 1 5 0 0 0 0 0 0 0 0 0 0 0 ( 23) ARG124 0 0 0 0 0 0 0 7 11 5 0 0 0 0 0 0 0 0 0 0 0 ( 45) ARG146 0 0 0 0 0 0 8 14 3 0 0 0 0 0 0 0 0 0 0 0 0 ( 47) ASP148 0 0 0 0 0 0 0 2 6 4 0 0 0 0 0 0 0 0 0 0 0 ( 48) HIS149 0 0 0 0 0 28 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 51) THR152 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 73) ARG174 0 0 0 13 13 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 75) ASP176 0 0 0 0 1 7 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 76) GLU177 0 0 1 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 79) ARG180 0 15 11 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 16) ARG118 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 12 6 ( 18) ASP120 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 ( 19) GLU121 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4 0 0 ( 22) ARG124 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 11 5 0 0 ( 44) ARG146 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 11 2 0 0 0 ( 45) SER147 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 ( 46) ASP148 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 7 2 0 0 ( 47) HIS149 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25 11 0 0 0 0 0 ( 50) THR152 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 ( 72) ARG174 0 0 0 0 0 0 0 0 0 0 0 0 11 11 11 0 0 0 0 0 0 ( 74) ASP176 0 0 0 0 0 0 0 0 0 0 0 0 0 2 5 1 0 0 0 0 0 ( 75) GLU177 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 ( 78) ARG180 0 0 0 0 0 0 0 0 0 0 7 12 10 0 0 0 0 0 0 0 0 prot.sequence erpyacpvescdrrfsRsDEltRhirihtgqkpfqcricmrnfsRsDHltThirthtgekpfacdicgrkfaRsDErkRhtkihlrq/rpyacpvescdrrfsRsDEltRhirihtgqkpfqcricmrnfsRSDHltThirthtgekpfacdicgrkfaRsDErkRhtkihl >1p59_A:DNA-glycosylase; title=STRUCTURE OF A NON-COVALENT ENDONUCLEASE III-DNA COMPLEX organism=Geobacillus stearothermophilus DNA sequence DG(C13):DC(B11) 5IU(C14):DA(B10) DC(C15):DG(B9) DC(C16):DG(B8) DA(C17):5IU(B7) 3DR(C18):DG(B6) DG(C19):DC(B5) 5IU(C20):DA(B4) DC(C21):DG(B3) DT(C22):DA(B2) chainA ( 41) ALA41 0 0 0 0 0 0 1 0 0 0 ( 42) GLN42 0 0 0 0 8 6 23 0 0 0 ( 43) CYS43 0 0 0 0 0 1 0 0 0 0 ( 44) THR44 0 0 0 0 2 0 0 0 0 0 ( 82) LEU82 0 0 0 0 0 17 10 0 0 0 prot.sequence mltkqqirycldemakmfpdahcelvhrnpfelliavvlsAQCTdalvnkvtkrlfekyrtphdyiavpleeleqdirsigLyrnkarniqklcamlidkyngevprdrdelmklpgvgrktanvvvstafgvpaiavdthvervskrlgfcrwddsvlevektlmkiipkeewsithhrmiffgryhckaqspqcpscpllhlcregkkrmrk >1p5w_A:ssDNA_viruses; title=THE STRUCTURES OF HOST RANGE CONTROLLING REGIONS OF THE CAPSIDS OF CANINE AND FELINE PARVOVIRUSES AND MUTANTS organism=Canine parvovirus DNA sequence DT(B2) DA(B3) DC(B4) DC(B5) DT(B6) DC(B7) DT(B8) DT(B9) DG(B10) DC(B11) chainA (105) PHE141 4 0 0 0 0 0 0 0 0 0 (107) GLN143 4 0 0 0 0 0 0 0 0 0 (137) LEU177 12 0 0 0 0 0 0 0 0 0 (139) SER179 3 0 0 0 0 0 0 0 0 0 (142) THR182 0 0 0 1 0 0 0 0 0 0 (204) TYR244 0 0 0 5 0 0 0 0 0 0 (223) THR263 11 0 0 0 0 0 0 0 0 0 (226) PHE266 5 29 0 0 0 0 0 0 0 0 (227) PHE267 0 3 0 0 0 0 0 0 0 0 (452) ASN492 0 0 5 0 0 0 0 0 0 0 (453) ASN493 0 7 2 0 0 0 0 0 0 0 (455) PRO495 3 0 0 0 0 0 0 0 0 0 prot.sequence gvgistgtfnnqtefkflengwveitanssrlvhlnmpesenyrrvvvnnmdktavrgnmalddihaqivtpwslvdanawgvwfnpgdwqlivntmselhlvsFeQeifnvvlktvsepptkvynndltaslmvaLdSnnTmpftpaamrsetlgfypwkptiptpwryyfqwdrtlipshtgtsgtptniyhgtdpddvqfYtiensvpvhllrtgdefaTgtFFfdckpcrlthtwqtnralglppflnslpqsegatnfgdigvqqdkrrgvtqmgntnyiteatimrpaevgysapyysfeastqgpfktpiaagrggaqtdenqaadgnpryafgrqhgqkttttgetperftyiahqdtgrypegdwiqninfnlpvtndnvllptdpiggktginytnifntygpltalnnvppvypngqiwdkefdtdlkprlhvnapfvcqNNcPgqlfvkvapnltneydpdasanmsrivtysdfwwkgklvfkaklrashtwnpiqqmsinvdnqfnyvpsniggmkivyeksqlaprkly >1p71_AB: title=ANABAENA HU-DNA CORCRYSTAL STRUCTURE (TR3) organism=Anabaena sp. DNA sequence DG(D2):DC(C20) DC(D3):DA(C19) DT(D4):DC(C18) DT(D5):DG(C17) DA(D6):DT(C16) DT(D7):DT(C15) DC(D8):DG(C14) DA(D9):DT(C13) DA(D10):DT(C12) DT(D11):DT(C11) DT(D12):DA(C10) DT(D13):DA(C9) DG(D14):DC(C8) DT(D15):DT(C7) DT(D16):DA(C6) DG(D17):DT(C5) DC(D18):DT(C4) DA(D19):DC(C3) DC(D20):DG(C2) chainA ( 58) ARG58 0 0 0 0 0 0 0 0 0 0 0 5 9 0 0 0 0 0 0 ( 61) ARG61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 6 0 0 0 ( 63) PRO63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 15 0 0 0 ( 64) LYS64 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 1 0 0 0 ( 71) ILE71 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 chainB ( 58) ARG58 0 0 0 0 0 0 9 5 0 0 0 0 0 0 0 0 0 0 0 ( 61) ARG61 0 0 0 6 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 63) PRO63 0 0 0 15 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 64) LYS64 0 0 0 1 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 71) ILE71 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence mnkgelvdavaekasvtkkqadavltaaletiieavssgdkvtlvgfgsfesrerkaRegRnPKtnekmeIpatrvpafsagklfrekvappka/mnkgelvdavaekasvtkkqadavltaaletiieavssgdkvtlvgfgsfesrerkaRegRnPKtnekmeIpatrvpafsagklfrekvappk >1p78_AB: title=ANABAENA HU-DNA COCRYSTAL STRUCTURE (AHU2) organism=Anabaena sp. DNA sequence DG(D2):DC(C20) DC(D3):DA(C19) DA(D4):DC(C18) DT(D5):DG(C17) DA(D6):DT(C16) DT(D7):DT(C15) DC(D8):DG(C14) DA(D9):DT(C13) DA(D10):DT(C12) DT(D11):DT(C11) DT(D12):DA(C10) DT(D13):DA(C9) DG(D14):DC(C8) DT(D15):DT(C7) DT(D16):DA(C6) DG(D17):DT(C5) DC(D18):DA(C4) DA(D19):DC(C3) DC(D20):DG(C2) DC(D21):DT(C1) chainA ( 58) ARG58 0 0 0 0 0 0 0 0 0 0 0 8 8 0 0 0 0 0 0 0 ( 61) ARG61 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 8 0 0 0 0 ( 63) PRO63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 15 0 0 0 0 ( 64) LYS64 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 1 1 0 0 0 ( 71) ILE71 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 chainB ( 58) ARG58 0 0 0 0 0 0 9 5 0 0 0 0 0 0 0 0 0 0 0 0 ( 61) ARG61 0 0 0 6 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 63) PRO63 0 0 2 15 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 64) LYS64 0 0 0 1 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 71) ILE71 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence mnkgelvdavaekasvtkkqadavltaaletiieavssgdkvtlvgfgsfesrerkaRegRnPKtnekmeIpatrvpafsagklfrekvapp/mnkgelvdavaekasvtkkqadavltaaletiieavssgdkvtlvgfgsfesrerkaRegRnPKtnekmeIpatrvpafsagklfrekvapp >1p78_B:IHF-like_DNA-binding_proteins; title=ANABAENA HU-DNA COCRYSTAL STRUCTURE (AHU2) organism=Anabaena sp. DNA sequence DG(D2):DC(C20) DC(D3):DA(C19) DA(D4):DC(C18) DT(D5):DG(C17) DA(D6):DT(C16) DT(D7):DT(C15) DC(D8):DG(C14) DA(D9):DT(C13) DA(D10):DT(C12) DT(D11):DT(C11) DT(D12):DA(C10) DT(D13):DA(C9) DG(D14):DC(C8) DT(D15):DT(C7) DT(D16):DA(C6) DG(D17):DT(C5) DC(D18):DA(C4) DA(D19):DC(C3) DC(D20):DG(C2) DC(D21):DT(C1) chainB ( 58) ARG58 0 0 0 0 0 0 9 5 0 0 0 0 0 0 0 0 0 0 0 0 ( 61) ARG61 0 0 0 6 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 63) PRO63 0 0 2 15 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 64) LYS64 0 0 0 1 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 71) ILE71 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence mnkgelvdavaekasvtkkqadavltaaletiieavssgdkvtlvgfgsfesrerkaRegRnPKtnekmeIpatrvpafsagklfrekvapp >1p7d_B:DNA_breaking-rejoining_enzymes; title=CRYSTAL STRUCTURE OF THE LAMBDA INTEGRASE (RESIDUES 75-356) BOUND TO DNA organism=ENTEROBACTERIA PHAGE LAMBDA DNA sequence DA(F21):DG(F19) DG(F22):DC(F18) DC(F23):DG(F17) DA(F24):DT(F16) DA(F25):DT(F15) DA(F26):DT(F14) DA(F27):DT(E13) DA(F28):DT(E12) DA(F29):DT(E11) DG(F30):DC(E10) DT(F31):DA(E9) DT(F32):DA(E8) DG(F33):DC(E7) DG(F34):DC(E6) DC(F35):DG(E5) DA(F36):DT(E4) DT(F37):DA(E3) DT(F38):DA(E2) DG(F39):DC(E1) chainB ( 22) LYS95 0 0 0 0 0 0 0 0 8 8 2 0 0 0 0 0 0 0 0 ( 23) THR96 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 ( 26) ASN99 0 0 0 0 0 0 0 8 14 2 0 0 0 0 0 0 0 0 0 ( 27) TYR100 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) SER102 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 30) LYS103 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 ( 62) ALA138 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 ( 63) SER139 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 ( 66) LEU142 0 0 0 0 0 0 0 3 4 0 0 0 0 0 0 0 0 0 0 (159) LYS235 0 0 0 0 0 0 4 5 0 0 0 0 0 0 0 0 0 0 0 (210) SER286 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 (211) ARG287 0 0 0 0 0 0 0 0 0 0 0 17 12 5 0 0 0 0 0 (212) TYR288 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 (259) SER335 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (265) GLN341 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence mtlhswldryekilasrgikqKTliNYmSKikairrglpdaplttkeiaamlngyidegkaASakLirstlsdafreaiaeghittnhvaatraaksevrrsrltadeylkiyqaaesspcwlrlamelavvtgqrvgdlcemkwsdivdgylyveqsKtgvkiaiptalhidalgismketldkckeilggetiiastrreplssgtvSRYfmrarkasglsfegdpptfhelrslsarlyekqisdkfaqhllghkSdtmasQrddrgrewdkieik >1p7h_L:p53-like_transcription_factors;E_set_domains; title=STRUCTURE OF NFAT1 BOUND AS A DIMER TO THE HIV-1 LTR KB ELEMENT organism=Homo sapiens DNA sequence DT(D3):DA(C15) DG(D4):DC(C14) DG(D5):DC(C13) DA(D6):DT(C12) DA(D7):DT(C11) DA(D8):DT(C10) DG(D9):DC(C9) DT(D10):DA(C8) DC(D11):DG(C7) DC(D12):DG(C6) DC(D13):DG(C5) DC(D14):DG(C4) DA(D15):DT(C3) DT(B1):DA(C2) DT(B2):DA(C1) DT(B3):DA(A15) DG(B4):DC(A14) DG(B5):DC(A13) DA(B6):DT(A12) DA(B7):DT(A11) DA(B8):DT(A10) DG(B9):DC(A9) DT(B10):DA(A8) DC(B11):DG(A7) DC(B12):DG(A6) DC(B13):DG(A5) DC(B14):DG(A4) chainL ( 29) ARG421 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 13 4 0 0 0 0 0 0 0 0 ( 32) TYR424 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 10 0 0 0 0 0 0 0 ( 34) THR426 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 35) GLU427 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 5 0 0 0 0 0 0 0 0 ( 38) ARG430 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 12 3 0 0 0 0 0 0 0 0 0 (145) ARG537 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 (179) GLN571 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 14 1 0 0 0 0 0 0 0 (272) LYS664 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 (273) ARG665 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 prot.sequence ssvplewplssqsgsyelrievqpkphhrahyetegsrgavkaptgghpvvqlhgymenkplglqifigtaderilkphafyqvhritgktvtttsyekivgntkvleiplepknnmratidcagilklrnadielrkgetdigrkntrvrlvfrvhipessgrivslqtasnpiecsqrsahelpmverqdtdsclvyggqqmiltgqnftseskvvftekttdgqqiwemeatvdkdksqpnmlfveipeyrnkhirtpvkvnfyvingkrkrsqpqhftyhpv >1p7h_LN:p53-like_transcription_factors;E_set_domains; title=STRUCTURE OF NFAT1 BOUND AS A DIMER TO THE HIV-1 LTR KB ELEMENT organism=Homo sapiens DNA sequence DG(A4):DC(B14) DG(A5):DC(B13) DG(A6):DC(B12) DG(A7):DC(B11) DA(A8):DT(B10) DC(A9):DG(B9) DT(A10):DA(B8) DT(A11):DA(B7) DT(A12):DA(B6) DC(A13):DG(B5) DC(A14):DG(B4) DA(A15):DT(B3) DA(C1):DT(B2) DA(C2):DT(B1) DT(C3):DA(D15) DG(C4):DC(D14) DG(C5):DC(D13) DG(C6):DC(D12) DG(C7):DC(D11) DA(C8):DT(D10) DC(C9):DG(D9) DT(C10):DA(D8) DT(C11):DA(D7) DT(C12):DA(D6) DC(C13):DG(D5) DC(C14):DG(D4) DA(C15):DT(D3) chainL ( 29) ARG421 0 0 0 0 0 0 0 0 4 13 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 32) TYR424 0 0 0 0 0 0 0 10 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 34) THR426 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 35) GLU427 0 0 0 0 0 0 0 0 5 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 38) ARG430 0 0 0 0 0 0 0 0 0 3 12 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (145) ARG537 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (179) GLN571 0 0 0 0 0 0 0 1 14 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (272) LYS664 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (273) ARG665 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainN ( 29) ARG421 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 13 4 0 0 0 0 0 0 0 0 ( 32) TYR424 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 10 0 0 0 0 0 0 0 ( 34) THR426 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 35) GLU427 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 4 0 0 0 0 0 0 0 0 ( 38) ARG430 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 10 4 0 0 0 0 0 0 0 0 0 (145) ARG537 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 (179) GLN571 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 13 1 0 0 0 0 0 0 0 (272) LYS664 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 (273) ARG665 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 prot.sequence ssvplewplssqsgsyelrievqpkphhRahYeTEgsRgavkaptgghpvvqlhgymenkplglqifigtaderilkphafyqvhritgktvtttsyekivgntkvleiplepknnmratidcagilklrnadielrkgetdigRkntrvrlvfrvhipessgrivslqtasnpiecsQrsahelpmverqdtdsclvyggqqmiltgqnftseskvvftekttdgqqiwemeatvdkdksqpnmlfveipeyrnkhirtpvkvnfyvingKRkrsqpqhftyhpv/ssvplewplssqsgsyelrievqpkphhRahYeTEgsRgavkaptgghpvvqlhgymenkplglqifigtaderilkphafyqvhritgktvtttsyekivgntkvleiplepknnmratidcagilklrnadielrkgetdigRkntrvrlvfrvhipessgrivslqtasnpiecsQrsahelpmverqdtdsclvyggqqmiltgqnftseskvvftekttdgqqiwemeatvdkdksqpnmlfveipeyrnkhirtpvkvnfyvingKRkrsqpqhftyhpv >1pa6_B:Nucleic_acid-binding_proteins; title=CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGAGG organism=STERKIELLA NOVA DNA sequence DG(D11) DA(D10) DG(D9) DT(D8) DG(D1) DG(D2) DG(D3) DG(D4) DT(D5):DT(D8) DT(D6) DT(D7) chainB ( 36) LYS44 0 0 1 0 0 0 0 0 0 1 0 ( 37) GLU45 0 0 11 0 0 0 0 0 0 4 0 ( 40) PRO48 0 0 1 0 0 0 0 0 0 0 0 ( 41) HIS49 0 0 13 0 0 0 0 0 0 0 0 ( 43) LEU51 0 0 3 0 0 0 0 0 0 0 0 ( 94) SER102 0 1 0 0 0 0 0 0 0 0 0 ( 98) PHE106 0 0 12 0 0 0 0 0 0 0 0 (101) TYR109 0 2 0 0 0 0 0 0 0 0 0 (126) TYR134 0 0 0 0 0 0 0 51 2 0 0 (132) ARG140 0 24 0 0 0 0 0 0 0 0 0 (137) LYS145 0 2 0 0 0 0 0 0 0 0 0 prot.sequence qqqsafkqlytelfnnegdfskvssnlkkplkcyvKEsyPHfLvtdgyffvapyftkeavnefhakfpnvnivdltdkvivinnwslelrrvnSaevFtsYanlearlivhsfkpnlqerlnptrYpvnlfRddefKttiqhfrhtalqaainktvkgdnlvdiskvadaagkkgkvdagivkasaskgdefsdfsfkegntatlkiadifvqekg >1par_ABCD: title=DNA RECOGNITION BY BETA-SHEETS IN THE ARC REPRESSOR-OPERATOR CRYSTAL STRUCTURE organism=ENTEROBACTERIA PHAGE P22 DNA sequence DA(F2):DT(E22) DT(F3):DA(E21) DG(F4):DC(E20) DA(F5):DT(E19) DT(F6):DA(E18) DA(F7):DT(E17) DG(F8):DC(E16) DA(F9):DT(E15) DA(F10):DT(E14) DG(F11):DC(E13) DC(F12):DG(E12) DA(F13):DT(E11) DC(F14):DG(E10) DT(F15):DA(E9) DC(F16):DG(E8) DT(F17):DA(E7) DA(F18):DT(E6) DC(F19):DG(E5) DT(F20):DA(E4) DA(F21):DT(E3) DT(F22):DA(E2) chainA ( 4) MET4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 ( 9) GLN9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 10 3 0 0 0 ( 11) ASN11 0 0 0 0 0 0 0 0 0 0 0 0 0 1 8 9 1 0 0 0 0 ( 13) ARG13 0 0 0 0 0 0 0 0 0 0 0 0 0 10 5 5 0 0 0 0 0 chainB ( 4) MET4 0 0 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 ( 9) GLN9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 13 0 0 0 0 ( 11) ASN11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 11 0 0 0 0 ( 13) ARG13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 7 8 0 chainC ( 4) MET4 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 5) SER5 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 9) GLN9 0 0 0 3 9 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 11) ASN11 0 0 0 0 0 10 7 6 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 13) ARG13 0 0 0 0 0 4 4 6 0 0 0 0 0 0 0 0 0 0 0 0 0 chainD ( 4) MET4 0 0 0 0 0 0 0 1 4 0 0 0 0 0 0 0 0 0 0 0 0 ( 5) SER5 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 ( 9) GLN9 0 0 0 0 6 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 11) ASN11 0 0 0 0 11 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 13) ARG13 0 10 11 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence mkgMskmpQfNlRwprevldlvrkvaeengrsvnseiyqrvmesfkkegrig/mkgMskmpQfNlRwprevldlvrkvaeengrsvnseiyqrvmesfkkegriga/mkgMSkmpQfNlRwprevldlvrkvaeengrsvnseiyqrvmesfkkegr/mkgMSkmpQfNlRwprevldlvrkvaeengrsvnseiyqrvmesfkkegriga >1par_B:Ribbon-helix-helix; title=DNA RECOGNITION BY BETA-SHEETS IN THE ARC REPRESSOR-OPERATOR CRYSTAL STRUCTURE organism=ENTEROBACTERIA PHAGE P22 DNA sequence DA(E2):DT(F22) DT(E3):DA(F21) DA(E4):DT(F20) DG(E5):DC(F19) DT(E6):DA(F18) DA(E7):DT(F17) DG(E8):DC(F16) DA(E9):DT(F15) DG(E10):DC(F14) DT(E11):DA(F13) DG(E12):DC(F12) DC(E13):DG(F11) DT(E14):DA(F10) DT(E15):DA(F9) DC(E16):DG(F8) DT(E17):DA(F7) DA(E18):DT(F6) DT(E19):DA(F5) DC(E20):DG(F4) DA(E21):DT(F3) DT(E22):DA(F2) chainB ( 4) MET4 0 0 0 0 0 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 ( 9) GLN9 0 0 0 0 13 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 11) ASN11 0 0 0 0 11 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 13) ARG13 0 8 7 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence mkgMskmpQfNlRwprevldlvrkvaeengrsvnseiyqrvmesfkkegriga >1per_LR: title=THE COMPLEX BETWEEN PHAGE 434 REPRESSION DNA-BINDING DOMAIN AND OPERATOR SITE OR3: STRUCTURAL DIFFERENCES BETWEEN CONSENSUS AND NON- CONSENSUS HALF-SITES organism=PHAGE 434 DNA sequence DA(B2):DT(A20) DT(B3):DA(A19) DA(B4):DT(A18) DC(B5):DG(A17) DA(B6):DT(A16) DA(B7):DT(A15) DG(B8):DC(A14) DA(B9):DT(A13) DA(B10):DT(A12) DA(B11):DT(A11) DA(B12):DT(A10) DA(B13):DT(A9) DC(B14):DG(A8) DT(B15):DA(A7) DG(B16):DC(A6) DT(B17):DA(A5) DA(B18):DT(A4) DC(B19):DG(A3) DT(B20):DA(A2) chainL ( 17) GLN17 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 27) THR27 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) GLN28 0 14 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) GLN29 0 0 6 15 18 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 30) SER30 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 32) GLU32 0 0 3 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 33) GLN33 0 0 0 0 1 9 4 0 0 0 0 0 0 0 0 0 0 0 0 ( 38) LYS38 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 43) ARG43 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 chainR ( 17) GLN17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 ( 27) THR27 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 ( 28) GLN28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 14 0 0 ( 29) GLN29 0 0 0 0 0 0 0 0 0 0 0 0 0 16 15 4 0 0 0 ( 30) SER30 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 ( 32) GLU32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4 0 0 0 prot.sequence sissrvkskriqlglnQaelaqkvgtTQQSiEQlengKtkrpRflpelasalgvsvdwllngt/sissrvkskriqlglnQaelaqkvgtTQQSiEqlengktkrprflpelasalgvsvdwllngt >1ph1_B:Nucleic_acid-binding_proteins; title=CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGGGT organism=STERKIELLA NOVA DNA sequence DG(D12) DG(D11) DG(D10) DG(D9) DG(D1) DG(D2) DG(D3) DG(D4) DT(D5) DT(D6):DG(D9) DT(D7) DT(D8) chainB ( 37) LYS44 0 0 1 0 0 0 0 0 0 0 2 0 ( 38) GLU45 0 0 11 0 0 0 0 0 0 0 4 0 ( 41) PRO48 0 0 1 0 0 0 0 0 0 0 0 0 ( 42) HIS49 0 0 12 0 0 0 0 0 0 0 0 0 ( 44) LEU51 0 0 3 0 0 0 0 0 0 0 0 0 ( 51) PHE58 0 0 1 0 0 0 0 0 0 0 0 0 ( 99) PHE106 0 0 11 0 0 0 0 0 0 0 0 0 (102) TYR109 0 4 0 0 0 0 0 0 0 0 0 0 (127) TYR134 0 0 0 0 0 0 0 0 34 3 1 0 (133) ARG140 0 35 0 0 0 0 0 0 0 0 0 0 (138) LYS145 0 6 0 0 0 0 0 0 0 0 0 0 prot.sequence pqqqsafkqlytelfnnegdfskvssnlkkplkcyvKEsyPHfLvtdgyfFvapyftkeavnefhakfpnvnivdltdkvivinnwslelrrvnsaevFtsYanlearlivhsfkpnlqerlnptrYpvnlfRddefKttiqhfrhtalqaainktvkgdnlvdiskvadaagkkgkvdagivkasaskgdefsdfsfkegntatlkiadifvqekg >1ph2_B:Nucleic_acid-binding_proteins; title=CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTG organism=STERKIELLA NOVA DNA sequence DT(D8) DT(D7) DT(D6) DT(D5) DG(D4) DG(D3) DG(D1) DG(D2):DG(D3) chainB ( 37) GLU45 8 0 0 0 0 0 0 0 ( 41) HIS49 7 0 0 0 0 0 0 0 ( 43) LEU51 3 0 0 0 0 0 0 0 ( 50) PHE58 1 0 0 0 0 0 0 0 ( 98) PHE106 21 0 0 0 0 0 0 0 (126) TYR134 0 0 0 3 38 0 0 0 prot.sequence qqqsafkqlytelfnnegdfskvssnlkkplkcyvkEsypHfLvtdgyfFvapyftkeavnefhakfpnvnivdltdkvivinnwslelrrvnsaevFtsYanlearlivhsfkpnlqerlnptrYpvNlfRddefKttiqhfrhtalqaainktvkgdnlvdiskvadaagkkgkvdagivkasaskgdefsdfsfkegntatlkiadifvqekg >1ph3_B:Nucleic_acid-binding_proteins; title=CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGTG organism=STERKIELLA NOVA DNA sequence DT(D11) DG(D10) DG(D9) DT(D8) DT(D7) DT(D6) DT(D5) DG(D4) DG(D3) DG(D1) DG(D2):DG(D3) chainB ( 37) GLU45 0 0 13 0 0 4 0 0 0 0 0 ( 40) PRO48 0 0 1 0 0 0 0 0 0 0 0 ( 41) HIS49 0 0 16 0 0 0 0 0 0 0 0 ( 43) LEU51 0 0 3 0 0 0 0 0 0 0 0 ( 50) PHE58 0 0 1 0 0 0 0 0 0 0 0 ( 98) PHE106 0 0 10 0 0 0 0 0 0 0 0 (101) TYR109 0 6 0 0 0 0 0 0 0 0 0 (126) TYR134 0 0 0 0 0 0 3 48 0 0 0 (132) ARG140 0 37 0 0 0 0 0 0 0 0 0 (137) LYS145 0 6 0 0 0 0 0 0 0 0 0 prot.sequence qqqsafkqlytelfnnegdfskvssnlkkplkcyvkEsyPHfLvtdgyfFvapyftkeavnefhakfpnvnivdltdkvivinnwslelrrvnsaevFtsYanlearlivhsfkpnlqerlnptrYpvnlfRddefKttiqhfrhtalqaainktvkgdnlvdiskvadaagkkgkvdagivkasaskgdefsdfsfkegntatlkiadifvqekg >1ph4_B:Nucleic_acid-binding_proteins; title=CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGCG organism=STERKIELLA NOVA DNA sequence DC(D11) DG(D10) DG(D9) DT(D8) DT(D7) DT(D6) DT(D5) DG(D4) DG(D3) DG(D1) DG(D2):DG(D3) chainB ( 36) LYS44 0 0 1 0 0 1 0 0 0 0 0 ( 37) GLU45 0 0 13 0 0 4 0 0 0 0 0 ( 40) PRO48 0 0 1 0 0 0 0 0 0 0 0 ( 41) HIS49 0 0 17 0 0 0 0 0 0 0 0 ( 43) LEU51 0 0 3 0 0 0 0 0 0 0 0 ( 50) PHE58 0 0 1 0 0 0 0 0 0 0 0 ( 98) PHE106 0 0 13 0 0 0 0 0 0 0 0 (101) TYR109 0 5 0 0 0 0 0 0 0 0 0 (126) TYR134 0 0 0 0 0 0 3 48 0 0 0 (132) ARG140 0 36 0 0 0 0 0 0 0 0 0 (137) LYS145 0 7 0 0 0 0 0 0 0 0 0 prot.sequence qqqsafkqlytelfnnegdfskvssnlkkplkcyvKEsyPHfLvtdgyfFvapyftkeavnefhakfpnvnivdltdkvivinnwslelrrvnsaevFtsYanlearlivhsfkpnlqerlnptrYpvnlfRddefKttiqhfrhtalqaainktvkgdnlvdiskvadaagkkgkvdagivkasaskgdefsdfsfkegntatlkiadifvqekg >1ph5_B:Nucleic_acid-binding_proteins; title=CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTG(3DR)GG organism=STERKIELLA NOVA DNA sequence DG(D2) DG(D3) DG(D4) DT(D5) DT(D6):DG(D12) DT(D7) DT(D8) DG(D9) DG(D11) chainB ( 36) LYS44 0 0 0 0 0 0 0 1 0 ( 37) GLU45 0 0 0 0 0 3 0 11 0 ( 40) PRO48 0 0 0 0 0 0 0 1 0 ( 41) HIS49 0 0 0 0 0 0 0 10 0 ( 43) LEU51 0 0 0 0 0 0 0 3 0 ( 50) PHE58 0 0 0 0 0 0 0 1 0 ( 98) PHE106 0 0 0 0 0 0 0 16 0 (126) TYR134 0 0 0 40 3 0 0 0 0 prot.sequence qqqsafkqlytelfnnegdfskvssnlkkplkcyvKEsyPHfLvtdgyfFvapyftkeavnefhakfpnvnivdltdkvivinnwslelrrvnsaevFtsyanlearlivhsfkpnlqerlnptrYpvnlfrddefkttiqhfrhtalqaainktvkgdnlvdiskvadaagkkgkvdagivkasaskgdefsdfsfkegntatlkiadifvqekg >1ph6_B:Nucleic_acid-binding_proteins; title=CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGTGG organism=STERKIELLA NOVA DNA sequence DG(D11) DT(D10) DG(D9) DT(D8) DT(D7) DT(D6) DT(D5) DG(D4) DG(D2) DG(D3):DG(D4) chainB ( 38) GLU45 0 0 12 0 2 0 0 0 0 0 ( 41) PRO48 0 0 1 0 0 0 0 0 0 0 ( 42) HIS49 0 0 13 0 0 0 0 0 0 0 ( 44) LEU51 0 0 3 0 0 0 0 0 0 0 ( 51) PHE58 0 0 1 0 0 0 0 0 0 0 ( 99) PHE106 0 0 16 0 0 0 0 0 0 0 (102) TYR109 0 3 0 0 0 0 0 0 0 0 (127) TYR134 0 0 0 0 0 3 33 0 0 0 (133) ARG140 0 28 0 0 0 0 0 0 0 0 (138) LYS145 0 5 0 0 0 0 0 0 0 0 prot.sequence pqqqsafkqlytelfnnegdfskvssnlkkplkcyvkEsyPHfLvtdgyfFvapyftkeavnefhakfpnvnivdltdkvivinnwslelrrvnsaevFtsYanlearlivhsfkpnlqerlnptrYpvnlfRddefKttiqhfrhtalqaainktvkgdnlvdiskvadaagkkgkvdagivkasaskgdefsdfsfkegntatlkiadifvqekg >1ph7_B:Nucleic_acid-binding_proteins; title=CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGIGG organism=STERKIELLA NOVA DNA sequence DG(D2) DG(D3) DG(D4) DT(D5) DT(D6) DT(D7) DT(D8) DG(D9) DI(D10) DG(D11) DG(D12) chainB ( 36) LYS44 0 0 0 0 0 0 0 1 0 0 0 ( 37) GLU45 0 0 0 0 0 3 0 12 0 0 0 ( 40) PRO48 0 0 0 0 0 0 0 1 0 0 0 ( 41) HIS49 0 0 0 0 0 0 0 13 0 0 0 ( 43) LEU51 0 0 0 0 0 0 0 3 0 0 0 ( 50) PHE58 0 0 0 0 0 0 0 1 0 0 0 ( 98) PHE106 0 0 0 0 0 0 0 14 0 0 0 (101) TYR109 0 0 0 0 0 0 0 0 5 0 0 (126) TYR134 0 0 0 43 3 0 0 0 0 0 0 (132) ARG140 0 0 0 0 0 0 0 0 34 0 0 (137) LYS145 0 0 0 0 0 0 0 0 5 0 0 prot.sequence qqqsafkqlytelfnnegdfskvssnlkkplkcyvKEsyPHfLvtdgyfFvapyftkeavnefhakfpnvnivdltdkvivinnwslelrrvnsaevFtsYanlearlivhsfkpnlqerlnptrYpvnlfRddefKttiqhfrhtalqaainktvkgdnlvdiskvadaagkkgkvdagivkasaskgdefsdfsfkegntatlkiadifvqekg >1ph8_B:Nucleic_acid-binding_proteins; title=CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGCGG organism=STERKIELLA NOVA DNA sequence DG(D2) DG(D3) DG(D4) DT(D5) DT(D6) DT(D7) DT(D8) DG(D9) DC(D10) DG(D11) DG(D12) chainB ( 36) LYS44 0 0 0 0 0 0 0 1 0 0 0 ( 37) GLU45 0 0 0 0 0 3 0 13 0 0 0 ( 40) PRO48 0 0 0 0 0 0 0 1 0 0 0 ( 41) HIS49 0 0 0 0 0 0 0 11 0 0 0 ( 43) LEU51 0 0 0 0 0 0 0 3 0 0 0 ( 50) PHE58 0 0 0 0 0 0 0 1 0 0 0 ( 98) PHE106 0 0 0 0 0 0 0 14 0 0 0 (101) TYR109 0 0 0 0 0 0 0 0 3 0 0 (126) TYR134 0 0 0 40 3 0 0 0 0 0 0 (132) ARG140 0 0 0 0 0 0 0 0 29 0 0 (137) LYS145 0 0 0 0 0 0 0 0 5 0 0 prot.sequence qqqsafkqlytelfnnegdfskvssnlkkplkcyvKEsyPHfLvtdgyfFvapyftkeavnefhakfpnvnivdltdkvivinnwslelrrvnsaevFtsYanlearlivhsfkpnlqerlnptrYpvnlfRddefKttiqhfrhtalqaainktvkgdnlvdiskvadaagkkgkvdagivkasaskgdefsdfsfkegntatlkiadifvqekg >1ph9_B:Nucleic_acid-binding_proteins; title=CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGAGG organism=STERKIELLA NOVA DNA sequence DG(D2) DG(D3) DG(D4) DT(D5) DT(D6) DT(D7) DT(D8) DG(D9) DA(D10) DG(D11) DG(D12) chainB ( 36) LYS44 0 0 0 0 0 0 0 1 0 0 0 ( 37) GLU45 0 0 0 0 0 1 0 11 0 0 0 ( 40) PRO48 0 0 0 0 0 0 0 1 0 0 0 ( 41) HIS49 0 0 0 0 0 0 0 10 0 0 0 ( 43) LEU51 0 0 0 0 0 0 0 3 0 0 0 ( 50) PHE58 0 0 0 0 0 0 0 1 0 0 0 ( 94) SER102 0 0 0 0 0 0 0 0 2 0 0 ( 98) PHE106 0 0 0 0 0 0 0 8 0 0 0 (101) TYR109 0 0 0 0 0 0 0 0 2 0 0 (126) TYR134 0 0 0 42 3 0 0 0 0 0 0 (132) ARG140 0 0 0 0 0 0 0 0 23 0 0 (137) LYS145 0 0 0 0 0 0 0 0 4 0 0 prot.sequence qqqsafkqlytelfnnegdfskvssnlkkplkcyvKEsyPHfLvtdgyfFvapyftkeavnefhakfpnvnivdltdkvivinnwslelrrvnSaevFtsYanlearlivhsfkpnlqerlnptrYpvnlfRddefKttiqhfrhtalqaainktvkgdnlvdiskvadaagkkgkvdagivkasaskgdefsdfsfkegntatlkiadifvqekg >1phj_B:Nucleic_acid-binding_proteins; title=CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GG(3DR)GTTTTGGGG organism=STERKIELLA NOVA DNA sequence DG(D11) DG(D10) DG(D9) DT(D8) DT(D7) DT(D6) DT(D5) DG(D4) DG(D1) DG(D2):DG(D4) chainB ( 35) LYS44 0 0 1 0 0 0 0 0 0 0 ( 36) GLU45 0 0 13 0 3 0 0 0 0 0 ( 39) PRO48 0 0 1 0 0 0 0 0 0 0 ( 40) HIS49 0 0 9 0 0 0 0 0 0 0 ( 42) LEU51 0 0 3 0 0 0 0 0 0 0 ( 49) PHE58 0 0 1 0 0 0 0 0 0 0 ( 97) PHE106 0 0 7 0 0 0 0 0 0 0 (100) TYR109 0 4 0 0 0 0 0 0 0 0 (125) TYR134 0 0 0 0 1 3 30 0 0 0 (131) ARG140 0 34 0 0 0 0 0 0 0 0 (136) LYS145 0 6 0 0 0 0 0 0 0 0 prot.sequence qqsafkqlytelfnnegdfskvssnlkkplkcyvKEsyPHfLvtdgyfFvapyftkeavnefhakfpnvnivdltdkvivinnwslelrrvnsaevFtsYanlearlivhsfkpnlqerlnptrYpvnlfRddefKttiqhfrhtalqaainktvkgdnlvdiskvadaagkkgkvdagivkasaskgdefsdfsfkegntatlkiadifvqekg >1pji_A:N-terminal_domain_of_MutM-like_DNA_repair_proteins;S13-like_H2TH_domain;Glucocorticoid_receptor-like_DNA-binding_domain; title=CRYSTAL STRUCTURE OF WILD TYPE LACTOCOCCUS LACTIS FPG COMPLEXED TO A 1,3 PROPANEDIOL CONTAINING DNA organism=Lactococcus lactis subsp. cremoris DNA sequence DC(E16):DG(D14) DG(E17):DC(D13) DA(E18):DT(D12) DG(E19):DC(D11) DA(E20):DT(D10) DA(E21):DT(D9) DA(E22):DT(D8) DC(E23):PDI(D7) DA(E24):DT(D6) DA(E25):DT(D5) DA(E26):DT(D4) DG(E27):DC(D3) DA(E28):DT(D2) chainA ( 2) GLU2 0 0 0 0 0 0 0 6 0 0 0 0 0 ( 74) ARG74 0 0 0 0 0 4 16 0 0 0 0 0 0 ( 75) MET75 0 0 0 0 0 0 24 5 0 0 0 0 0 (109) ARG109 0 0 0 0 0 0 2 15 34 0 0 0 0 (111) PHE111 0 0 0 0 0 0 76 10 0 0 0 0 0 (171) ASN171 0 0 0 0 0 0 0 5 0 0 0 0 0 (172) ILE172 0 0 0 0 0 0 0 3 0 0 0 0 0 (234) TYR238 0 0 0 0 0 0 0 3 0 0 0 0 0 (256) ARG260 0 0 0 0 0 1 10 2 0 0 0 0 0 prot.sequence pelpevetvrrelekrivgqkiisieatyprmvltgfeqlkkeltgktiqgisrrgkylifeigddfrlishlRMEgkyrlatldaprekhdhltmkfadgqliyadvRkFgtwelistdqvlpyflkkkigpeptyedfdeklfreklrkstkkikpylleqtlvaglgniyvdevlwlakihpeketnqliessihllhdsiieilqkaiklggsssalgstgkmqnelqvygktgekcsrcgaeiqkikvagRgthfcpvcqqk >1pjj_A:N-terminal_domain_of_MutM-like_DNA_repair_proteins;S13-like_H2TH_domain;Glucocorticoid_receptor-like_DNA-binding_domain; title=COMPLEX BETWEEN THE LACTOCOCCUS LACTIS FPG AND AN ABASIC SITE CONTAINING DNA. organism=Lactococcus lactis DNA sequence DC(E16):DG(D14) DG(E17):DC(D13) DA(E18):DT(D12) DG(E19):DC(D11) DA(E20):DT(D10) DA(E21):DT(D9) DA(E22):DT(D8) DC(E23):3DR(D7) DA(E24):DT(D6) DA(E25):DT(D5) DA(E26):DT(D4) DG(E27):DC(D3) DA(E28):DT(D2) chainA ( 74) ARG74 0 0 0 0 0 4 14 0 0 0 0 0 0 ( 75) MET75 0 0 0 0 0 0 26 0 0 0 0 0 0 (109) ARG109 0 0 0 0 0 0 0 15 38 0 0 0 0 (111) PHE111 0 0 0 0 0 0 74 10 0 0 0 0 0 (260) ARG260 0 0 0 0 0 1 10 0 0 0 0 0 0 prot.sequence gelpevetvrrelekrivgqkiisieatyprmvltgfeqlkkeltgktiqgisrrgkylifeigddfrlishlRMegkyrlatldaprekhdhltmkfadgqliyadvRkFgtwelistdqvlpyflkkkigpeptyedfdeklfreklrkstkkikpylleqtlvaglgniyvdevlwlakihpeketnqliessihllhdsiieilqkaiklggssirtysalgstgkmqnelqvygktgekcsrcgaeiqkikvagRgthfcpvcqqk >1pm5_A:N-terminal_domain_of_MutM-like_DNA_repair_proteins;S13-like_H2TH_domain;Glucocorticoid_receptor-like_DNA-binding_domain; title=CRYSTAL STRUCTURE OF WILD TYPE LACTOCOCCUS LACTIS FPG COMPLEXED TO A TETRAHYDROFURAN CONTAINING DNA organism=Lactococcus lactis subsp. cremoris DNA sequence DC(E16):DG(D14) DG(E17):DC(D13) DA(E18):DT(D12) DG(E19):DC(D11) DA(E20):DT(D10) DA(E21):DT(D9) DA(E22):DT(D8) DC(E23):3DR(D7) DA(E24):DT(D6) DA(E25):DT(D5) DA(E26):DT(D4) DG(E27):DC(D3) DA(E28):DT(D2) chainA ( 74) ARG74 0 0 0 0 0 4 14 0 0 0 0 0 0 ( 75) MET75 0 0 0 0 0 0 26 0 0 0 0 0 0 ( 76) GLU76 0 0 0 0 0 0 0 0 1 0 0 0 0 (109) ARG109 0 0 0 0 0 0 2 15 37 0 0 0 0 (111) PHE111 0 0 0 0 0 0 72 10 0 0 0 0 0 (260) ARG260 0 0 0 0 0 1 10 0 0 0 0 0 0 prot.sequence pelpevetvrrelekrivgqkiisieatyprmvltgfeqlkkeltgktiqgisrrgkylifeigddfrlishlRMEgkyrlatldaprekhdhltmkfadgqliyadvRkFgtwelistdqvlpyflkkkigpeptyedfdeklfreklrkstkkikpylleqtlvaglgniyvdevlwlakihpeketnqliessihllhdsiieilqkaiklggssirtysalgstgkmqnelqvygktgekcsrcgaeiqkikvagRgthfcpvcqqk >1pnr_A:Periplasmic_binding_protein-like_I;lambda_repressor-like_DNA-binding_domains; title=PURINE REPRESSOR-HYPOXANTHINE-PURF-OPERATOR COMPLEX organism=ESCHERICHIA COLI DNA sequence DA(B699) DA(B700) DC(B701) DG(B702) DA(B703) DA(B704) DA(B705) DA(B706) DC(B707) DG(B708) DT(B709) DT(B710) DT(B711) DT(B712) DC(B713) DG(B714) DT(B715) chainA ( 12) SER14 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 14) THR16 0 0 0 2 6 3 0 0 0 0 0 0 0 0 0 0 0 ( 24) ARG26 0 0 23 12 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 52) LEU54 0 0 0 0 0 0 0 0 9 4 0 0 0 0 0 0 0 ( 53) LYS55 0 0 0 0 0 0 0 10 5 0 0 0 0 0 0 0 0 prot.sequence tikdvakranvStTtvshvinktRfvaeetrnavwaaikelhyspsavarsLKvnhtksigllatsseaayfaeiieavekncfqkgytlilgnawnnlekqraylsmmaqkrvdgllvmcseypepllamleeyrhipmvvmdwgeakadftdavidnafeggymagrylierghreigvipgplerntgagrlagfmkameeamikvpeswivqgdfepesgyramqqilsqphrptavfcggdimamgalcaademglrvpqdvsligydnvrnaryftpalttihqpkdslgetafnmlldrivnkreepqsievhprlierrsvadgpfrdyr >1pp8_F:"Winged_helix"_DNA-binding_domain; title=CRYSTAL STRUCTURE OF THE T. VAGINALIS IBP39 INITIATOR BINDING DOMAIN (IBD) BOUND TO THE ALPHA-SCS INR ELEMENT organism=Trichomonas vaginalis DNA sequence DT(I27):DA(T14) DC(I28):DG(T13) DA(I29):DT(T12) DC(I30):DG(T11) DT(I31):DA(T10) DT(I32):DA(T9) DC(I33):DG(T8) DA(I34):DT(T7) DC(I35):DG(T6) DA(I36):DT(T5) DT(I37):DA(T4) DG(E26):DC(T3) DT(E27):DA(G14) DC(E28):DG(G13) DA(E29):DT(G12) DC(E30):DG(G11) DT(E31):DA(G10) DT(E32):DA(G9) DC(E33):DG(G8) DA(E34):DT(G7) DC(E35):DG(G6) DA(E36):DT(G5) DT(E37):DA(G4) DG(Y26):DC(G3) DT(Y27):DA(R14) DC(Y28):DG(R13) DA(Y29):DT(R12) DC(Y30):DG(R11) DT(Y31):DA(R10) DT(Y32):DA(R9) DC(Y33):DG(R8) DA(Y34):DT(R7) DC(Y35):DG(R6) DA(Y36):DT(R5) DT(Y37):DA(R4) DG(K26):DC(R3) DT(K27):DA(J14) DC(K28):DG(J13) DA(K29):DT(J12) DC(K30):DG(J11) DT(K31):DA(J10) DT(K32):DA(J9) DC(K33):DG(J8) DA(K34):DT(J7) DC(K35):DG(J6) DA(K36):DT(J5) DT(K37):DA(J4) chainF ( 24) LYS25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 7 0 0 0 0 0 0 0 0 ( 25) SER26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 27) ARG28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 5 0 0 0 0 0 0 0 0 0 0 ( 80) ASN81 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 8 4 0 0 ( 81) THR82 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4 0 0 0 0 0 ( 84) VAL85 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 prot.sequence dsndleasftsrlppeivaalkrKSsRdpnsrfprklhmlltylasnpqleeeiglswisdtefkmkkknvalvmgiklNTlnVnlrdlafeqlqhdkggwtqwkrsgftrns >1pp8_FMU: title=CRYSTAL STRUCTURE OF THE T. VAGINALIS IBP39 INITIATOR BINDING DOMAIN (IBD) BOUND TO THE ALPHA-SCS INR ELEMENT organism=Trichomonas vaginalis DNA sequence DA(J4):DT(K37) DT(J5):DA(K36) DG(J6):DC(K35) DT(J7):DA(K34) DG(J8):DC(K33) DA(J9):DT(K32) DA(J10):DT(K31) DG(J11):DC(K30) DT(J12):DA(K29) DG(J13):DC(K28) DA(J14):DT(K27) DC(R3):DG(K26) DA(R4):DT(Y37) DT(R5):DA(Y36) DG(R6):DC(Y35) DT(R7):DA(Y34) DG(R8):DC(Y33) DA(R9):DT(Y32) DA(R10):DT(Y31) DG(R11):DC(Y30) DT(R12):DA(Y29) DG(R13):DC(Y28) DA(R14):DT(Y27) DC(G3):DG(Y26) DA(G4):DT(E37) DT(G5):DA(E36) DG(G6):DC(E35) DT(G7):DA(E34) DG(G8):DC(E33) DA(G9):DT(E32) DA(G10):DT(E31) DG(G11):DC(E30) DT(G12):DA(E29) DG(G13):DC(E28) DA(G14):DT(E27) DC(T3):DG(E26) DA(T4):DT(I37) DT(T5):DA(I36) DG(T6):DC(I35) DT(T7):DA(I34) DG(T8):DC(I33) DA(T9):DT(I32) DA(T10):DT(I31) DG(T11):DC(I30) DT(T12):DA(I29) DG(T13):DC(I28) DA(T14):DT(I27) chainU ( 24) LYS25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 10 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) SER26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 27) ARG28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 5 0 0 0 0 0 0 0 0 0 0 0 ( 80) ASN81 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 8 5 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 81) THR82 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 84) VAL85 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 85) ASN86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainF ( 24) LYS25 0 0 0 0 0 0 0 0 7 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) SER26 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 27) ARG28 0 0 0 0 0 0 0 0 0 0 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 80) ASN81 0 0 4 8 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 81) THR82 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 84) VAL85 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainM ( 25) LYS25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 26) SER26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) ARG28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 81) ASN81 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 8 6 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 82) THR82 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 84) ASN84 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 85) VAL85 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence dsndleasftsrlppeivaalkrKSsRdpnsrfprklhmlltylasnpqleeeiglswisdtefkmkkknvalvmgiklNTlnVnlrdlafeqlqhdkggwtqwkrsgftrns/mdsndleasftsrlppeivaalkrKSsRdpnsrfprklhmlltylasnpqleeeiglswisdtefkmkkknvalvmgiklNTlNVnlrdlafeqlqhdkggwtqwkrsgftrnsvfed/dsndleasftsrlppeivaalkrKSsRdpnsrfprklhmlltylasnpqleeeiglswisdtefkmkkknvalvmgiklNTlnVNlrdlafeqlqhdkggwtqwkrsgftr >1pue_E:"Winged_helix"_DNA-binding_domain; title=PU.1 ETS DOMAIN-DNA COMPLEX organism=Mus musculus DNA sequence DC(B18):DG(A16) DC(B19):DG(A15) DC(B20):DG(A14) DA(B21):DT(A13) DC(B22):DG(A12) DT(B23):DA(A11) DT(B24):DA(A10) DC(B25):DG(A9) DC(B26):DG(A8) DC(B27):DG(A7) DC(B28):DG(A6) DT(B29):DA(A5) DT(B30):DA(A4) DT(B31):DA(A3) DT(B32):DA(A2) chainE ( 58) GLU228 0 0 0 0 0 0 0 0 1 3 0 0 0 0 0 ( 59) LYS229 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 ( 62) ARG232 0 0 0 0 0 2 14 15 13 0 0 0 0 0 0 ( 63) ALA233 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 ( 65) ARG235 0 0 0 0 0 0 0 0 9 12 0 0 0 0 0 ( 66) ASN236 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 prot.sequence kirlyqflldllrsgdmkdsiwwvdkdkgtfqfsskhkealahrwgiqkgnrkkmtyEKmaRAlRNygktgevkkvkkkltyqfsgev >1puf_AB: title=CRYSTAL STRUCTURE OF HOXA9 AND PBX1 HOMEODOMAINS BOUND TO DNA organism=HOMO SAPIENS / MUS MUSCULUS DNA sequence DC(D2):DG(E40) DT(D3):DA(E39) DC(D4):DG(E38) DT(D5):DA(E37) DA(D6):DT(E36) DT(D7):DA(E35) DG(D8):DC(E34) DA(D9):DT(E33) DT(D10):DA(E32) DT(D11):DA(E31) DT(D12):DA(E30) DA(D13):DT(E29) DC(D14):DG(E28) DG(D15):DC(E27) DA(D16):DT(E26) DC(D17):DG(E25) DG(D18):DC(E24) DC(D19):DG(E23) DT(D20):DA(E22) chainA ( 14) ARG206 0 0 0 0 0 0 0 0 0 0 2 2 2 0 0 0 0 0 0 ( 17) ARG209 0 0 0 0 0 0 0 0 7 11 8 0 0 0 0 0 0 0 0 ( 59) ILE251 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 ( 62) GLN254 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 2 0 0 0 ( 63) ASN255 0 0 0 0 0 0 0 0 0 0 8 11 2 0 0 0 0 0 0 ( 66) MET258 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 chainB ( 5) ARG237 0 0 0 3 4 7 4 0 0 0 0 0 0 0 0 0 0 0 0 ( 50) ASN282 0 0 0 0 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 ( 54) ASN286 0 0 0 0 0 0 6 10 1 0 0 0 0 0 0 0 0 0 0 ( 57) ILE289 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 ( 58) ARG290 0 0 0 0 0 13 11 3 0 0 0 0 0 0 0 0 0 0 0 prot.sequence nnpaanwlharstRkkRcpytkhqtlelekeflfnmyltrdrryevarllnlterqvkIwfQNrrMkmkkinkdrak/arrkRrnfnkqateilneyfyshlsnpypseeakeelakkcgitvsqvsNwfgNkrIRykknigkfqeeaniy >1pv4_A:P-loop_containing_nucleoside_triphosphate_hydrolases;Nucleic_acid-binding_proteins;Rho_termination_factor,_N-terminal_domain; title=X-RAY CRYSTAL STRUCTURE OF THE RHO TRANSCRIPTION TERMINATION FACTOR IN COMPLEX WITH SINGLE STRANDED DNA organism=Escherichia coli DNA sequence DC(G3) DC(G4) chainA ( 58) LEU58 0 4 ( 64) PHE64 0 34 ( 66) ARG66 0 14 ( 74) ALA74 0 3 ( 78) ASP78 0 4 ( 80) TYR80 23 0 (102) ARG102 2 0 (108) GLU108 19 0 (109) ARG109 4 0 (110) TYR110 9 13 (112) ALA112 1 0 prot.sequence mnltelkntpvselitlgenmglenlarmrkqdiifailkqhaksgedifgdgvleiLqdgfgFlRsadssylAgpdDiYvspsqirrfnlrtgdtisgkiRppkegERYfAllkvnevnfdkpennkilfenltplhansrlrmgstedltarvldlaspigrgqrglivappkagktmllqniaqsiaynhpdcvlmvlliderpeevtemqrlvkgevvastfdepasrhvqvaemviekakrlvehkkdviilldsitrlarayntvvpavltggvdanalhrpkrffgaarnveeggsltiiatalidtgskmdeviyeefkgtgnmelhlsrkiaekrvfpaidynrsgtrkeellttqeelqkmwilrkiihpmgeidameflinklamtktnddffemmk >1pvi_A:Restriction_endonuclease-like; title=STRUCTURE OF PVUII ENDONUCLEASE WITH COGNATE DNA organism=PROTEUS VULGARIS DNA sequence DG(C3):DC(D14) DA(C4):DT(D13) DC(C5):DG(D12) DC(C6):DG(D11) DA(C7):DT(D10) DG(C8):DC(D9) DC(C9):DG(D8) DT(C10):DA(D7) DG(C11):DC(D6) DG(C12):DC(D5) DT(C13):DA(D4) DC(C14):DG(D3) chainA ( 33) ASP34 0 0 0 0 0 3 6 0 0 0 0 0 ( 80) SER81 0 0 0 2 8 0 0 0 0 0 0 0 ( 83) HIS84 0 0 0 0 24 13 0 0 0 0 0 0 (139) ASN140 0 0 0 12 8 0 0 0 0 0 0 0 (140) ASN141 0 0 0 8 15 0 0 0 0 0 0 0 (142) LYS143 0 0 8 11 0 0 0 0 0 0 0 0 prot.sequence shpdlnkllelwphiqeyqdlalkhgindifqDnggkllqvllitgltvlpgregndavdnagqeyelksinidltkgfSthHhmnpviiakyrqvpwifaiyrgiaieaiyrlepkdlefyydkwerkwysdghkdiNNpKipvkyvmehgtkiy >1pvi_AB: title=STRUCTURE OF PVUII ENDONUCLEASE WITH COGNATE DNA organism=PROTEUS VULGARIS DNA sequence DG(D3):DC(C14) DA(D4):DT(C13) DC(D5):DG(C12) DC(D6):DG(C11) DA(D7):DT(C10) DG(D8):DC(C9) DC(D9):DG(C8) DT(D10):DA(C7) DG(D11):DC(C6) DG(D12):DC(C5) DT(D13):DA(C4) DC(D14):DG(C3) chainA ( 33) ASP34 0 0 0 0 0 6 3 0 0 0 0 0 ( 80) SER81 0 0 0 0 0 0 0 8 2 0 0 0 ( 83) HIS84 0 0 0 0 0 0 13 24 0 0 0 0 (139) ASN140 0 0 0 0 0 0 0 8 12 0 0 0 (140) ASN141 0 0 0 0 0 0 0 15 8 0 0 0 (142) LYS143 0 0 0 0 0 0 0 0 11 8 0 0 chainB ( 33) ASP34 0 0 0 0 0 1 4 0 0 0 0 0 ( 80) SER81 0 0 0 2 6 0 0 0 0 0 0 0 ( 83) HIS84 0 0 0 0 34 12 0 0 0 0 0 0 (139) ASN140 0 0 0 11 10 0 0 0 0 0 0 0 (140) ASN141 0 0 1 9 17 0 0 0 0 0 0 0 (142) LYS143 0 1 9 9 0 0 0 0 0 0 0 0 prot.sequence shpdlnkllelwphiqeyqdlalkhgindifqDnggkllqvllitgltvlpgregndavdnagqeyelksinidltkgfSthHhmnpviiakyrqvpwifaiyrgiaieaiyrlepkdlefyydkwerkwysdghkdiNNpKipvkyvmehgtkiy/shpdlnkllelwphiqeyqdlalkhgindifqDnggkllqvllitgltvlpgregndavdnagqeyelksinidltkgfSthHhmnpviiakyrqvpwifaiyrgiaieaiyrlepkdlefyydkwerkwysdghkdiNNpKipvkyvmehgtkiy >1pvp_AB:DNA_breaking-rejoining_enzymes;lambda_integrase-like,_N-terminal_domain; title=BASIS FOR A SWITCH IN SUBSTRATE SPECIFICITY: CRYSTAL STRUCTURE OF SELECTED VARIANT OF CRE SITE-SPECIFIC RECOMBINASE, ALSHG BOUND TO THE ENGINEERED RECOGNITION SITE LOXM7 organism=Escherichia phage P1 DNA sequence DC(D19):DG(C16) DA(D20):DT(C15) DT(D21):DA(C14) DT(D22):DA(C13) DA(D23):DT(C12) DT(D24):DA(C11) DA(D25):DT(C10) DT(D26):DA(C9) DA(D27):DT(C8) DG(D28):DC(C7) DA(D29):DT(C6) DG(D30):DC(C5) DT(D31):DA(C4) DT(D32):DA(C3) DA(D33):DT(C2) DT(D34):DA(C1) chainA chainB ( 22) HIS40 0 0 0 0 3 6 0 0 0 0 0 0 0 0 0 0 ( 23) THR41 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) LYS43 0 0 0 0 0 6 11 0 0 0 0 0 0 0 0 0 ( 26) MET44 0 0 0 0 8 7 2 0 0 0 0 0 0 0 0 0 ( 29) SER47 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 ( 68) LYS86 0 0 6 7 0 0 0 0 0 0 0 0 0 0 0 0 ( 69) THR87 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 ( 72) GLN90 0 0 4 8 11 0 0 0 0 0 0 0 0 0 0 0 ( 76) GLN94 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 (183) LYS201 0 1 6 5 0 0 0 0 0 0 0 0 0 0 0 0 (223) ARG241 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 (225) ARG243 0 0 0 0 0 0 0 0 0 0 0 0 0 8 4 0 (226) LYS244 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5 3 (239) SER257 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 (241) SER259 0 0 0 0 0 0 0 0 1 6 5 0 0 0 0 0 (244) HIS262 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 (264) ARG282 0 0 0 0 0 8 7 0 0 0 0 0 0 0 0 0 (299) ASN317 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence tsdevrknlmdmfrdrqafsehtwkmllsvcrswaawcklnnrkwfpaepedvrdyllylqarglavktiqqhlgqlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllraaeiarirvkdisrtdggrmlihigrtktlvstagvekalslgvtklverwisvsgvaddpnnylfcrvrkngvaapsatsqlslsalhgifgathrliygakddsgqrylawsghsarvgaardmaragvsipeimqaggwtnvnivmnyirnldsetgamvrlled/tsdevrknlmdmfrdrqafseHTwKMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllraaeiarirvkdisrtdggrmlihigrtKtlvstagvekalslgvtklverwisvsgvaddpnnylfcRvRKngvaapsatsqlSlSalHgifgathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtNvnivmnyirtgamvrlled >1pvq_A:DNA_breaking-rejoining_enzymes;lambda_integrase-like,_N-terminal_domain; title=BASIS FOR A SWITCH IN SUBSTRATE SPECIFICITY: CRYSTAL STRUCTURE OF SELECTED VARIANT OF CRE SITE-SPECIFIC RECOMBINASE, LNSGG BOUND TO THE ENGINEERED RECOGNITION SITE LOXM7 organism=Escherichia phage P1 DNA sequence DA(D1):DT(C34) DT(D2):DA(C33) DA(D3):DT(C32) DA(D4):DT(C31) DC(D5):DG(C30) DT(D6):DA(C29) DC(D7):DG(C28) DT(D8):DA(C27) DA(D9):DT(C26) DT(D10):DA(C25) DA(D11):DT(C24) DT(D12):DA(C23) DA(D13):DT(C22) DG(D14):DC(C21) DC(D15):DG(C20) DA(D18):DT(C19) DC(D19):DG(C16) DA(D20):DT(C15) DT(D21):DA(C14) DT(D22):DA(C13) DA(D23):DT(C12) DT(D24):DA(C11) DA(D25):DT(C10) DT(D26):DA(C9) DA(D27):DT(C8) DG(D28):DC(C7) DA(D29):DT(C6) DG(D30):DC(C5) DT(D31):DA(C4) DT(D32):DA(C3) DA(D33):DT(C2) DT(D34):DA(C1) chainA ( 26) MET44 0 0 0 0 0 0 0 0 0 5 3 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) SER47 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 69) THR87 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 72) GLN90 0 0 0 0 0 0 0 0 0 0 0 7 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (223) ARG241 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (226) LYS244 1 6 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (239) SER257 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (241) SER259 0 0 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (264) ARG282 0 0 0 0 0 0 0 0 0 0 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence tsdevrknlmdmfrdrqafsehtwkMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavkTiqQhlgqlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllrlaeiarirvkdisrtdggrmlihigrtktlvstagvekalslgvtklverwisvsgvaddpnnylfcRvrKngvaapsatsqlSnSalggifgathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtnvnivmnyirnldsetgamvrlled >1pvq_AB:DNA_breaking-rejoining_enzymes;lambda_integrase-like,_N-terminal_domain; title=BASIS FOR A SWITCH IN SUBSTRATE SPECIFICITY: CRYSTAL STRUCTURE OF SELECTED VARIANT OF CRE SITE-SPECIFIC RECOMBINASE, LNSGG BOUND TO THE ENGINEERED RECOGNITION SITE LOXM7 organism=Escherichia phage P1 DNA sequence DA(D1):DT(C34) DT(D2):DA(C33) DA(D3):DT(C32) DA(D4):DT(C31) DC(D5):DG(C30) DT(D6):DA(C29) DC(D7):DG(C28) DT(D8):DA(C27) DA(D9):DT(C26) DT(D10):DA(C25) DA(D11):DT(C24) DT(D12):DA(C23) DA(D13):DT(C22) DG(D14):DC(C21) DC(D15):DG(C20) DA(D18):DT(C19) DC(D19):DG(C16) DA(D20):DT(C15) DT(D21):DA(C14) DT(D22):DA(C13) DA(D23):DT(C12) DT(D24):DA(C11) DA(D25):DT(C10) DT(D26):DA(C9) DA(D27):DT(C8) DG(D28):DC(C7) DA(D29):DT(C6) DG(D30):DC(C5) DT(D31):DA(C4) DT(D32):DA(C3) DA(D33):DT(C2) DT(D34):DA(C1) chainA ( 26) MET44 0 0 0 0 0 0 0 0 0 5 3 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) SER47 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 69) THR87 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 72) GLN90 0 0 0 0 0 0 0 0 0 0 0 7 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (223) ARG241 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (226) LYS244 1 6 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (239) SER257 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (241) SER259 0 0 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (264) ARG282 0 0 0 0 0 0 0 0 0 0 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 22) HIS40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 6 0 0 0 0 0 0 0 0 0 0 ( 23) THR41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) LYS43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 5 0 0 0 0 0 0 0 0 0 ( 26) MET44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 6 1 0 0 0 0 0 0 0 0 0 ( 29) SER47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 ( 68) LYS86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 8 0 0 0 0 0 0 0 0 0 0 0 0 ( 69) THR87 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 ( 72) GLN90 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 9 14 0 0 0 0 0 0 0 0 0 0 0 ( 76) GLN94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 (183) LYS201 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 7 6 0 0 0 0 0 0 0 0 0 0 0 0 (223) ARG241 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 (225) ARG243 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 4 0 (226) LYS244 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 7 5 (239) SER257 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 (241) SER259 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 6 2 0 0 0 0 0 (264) ARG282 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 6 0 0 0 0 0 0 0 0 0 (302) ILE320 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence tsdevrknlmdmfrdrqafsehtwkMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavkTiqQhlgqlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllrlaeiarirvkdisrtdggrmlihigrtktlvstagvekalslgvtklverwisvsgvaddpnnylfcRvrKngvaapsatsqlSnSalggifgathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtnvnivmnyirnldsetgamvrlled/tsdevrknlmdmfrdrqafseHTwKMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllrlaeiarirvkdisrtdggrmlihigrtKtlvstagvekalslgvtklverwisvsgvaddpnnylfcRvRKngvaapsatsqlSnSalggifgathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtnvnIvmnyirntgamvrlled >1pvr_AB:DNA_breaking-rejoining_enzymes;lambda_integrase-like,_N-terminal_domain; title=BASIS FOR A SWITCH IN SUBSTRATE SPECIFICITY: CRYSTAL STRUCTURE OF SELECTED VARIANT OF CRE SITE-SPECIFIC RECOMBINASE, LNSGG BOUND TO THE LOXP (WILDTYPE) RECOGNITION SITE organism=Enterobacteria phage P1 DNA sequence DA(D1):DT(C34) DT(D2):DA(C33) DA(D3):DT(C32) DA(D4):DT(C31) DC(D5):DG(C30) DT(D6):DA(C29) DT(D7):DA(C28) DC(D8):DG(C27) DG(D9):DC(C26) DT(D10):DA(C25) DA(D11):DT(C24) DT(D12):DA(C23) DA(D13):DT(C22) DG(D14):DC(C21) DC(D15):DG(C20) DA(D16):DT(C19) DT(D17):DA(C18) DC(D19):DG(C16) DA(D20):DT(C15) DT(D21):DA(C14) DT(D22):DA(C13) DA(D23):DT(C12) DT(D24):DA(C11) DA(D25):DT(C10) DC(D26):DG(C9) DG(D27):DC(C8) DA(D28):DT(C7) DA(D29):DT(C6) DG(D30):DC(C5) DT(D31):DA(C4) DT(D32):DA(C3) DA(D33):DT(C2) DT(D34):DA(C1) chainA ( 27) MET44 0 0 0 0 0 0 0 0 0 5 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 30) SER47 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 70) THR87 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 73) GLN90 0 0 0 0 0 0 0 0 0 0 0 9 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (224) ARG241 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (227) LYS244 1 6 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (240) SER257 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (242) SER259 0 0 0 0 0 1 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (265) ARG282 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 22) HIS40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 6 0 0 0 0 0 0 0 0 0 0 ( 23) THR41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) LYS43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 6 0 0 0 0 0 0 0 0 0 ( 26) MET44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 3 2 0 0 0 0 0 0 0 0 0 ( 29) SER47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 ( 68) LYS86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 8 8 0 0 0 0 0 0 0 0 0 0 0 0 ( 69) THR87 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 ( 72) GLN90 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 8 13 0 0 0 0 0 0 0 0 0 0 0 ( 76) GLN94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 (183) LYS201 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 7 6 0 0 0 0 0 0 0 0 0 0 0 0 (223) ARG241 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 (225) ARG243 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 5 0 (226) LYS244 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5 2 (239) SER257 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 (241) SER259 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 7 6 0 0 0 0 0 0 (264) ARG282 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 5 0 0 0 0 0 0 0 0 0 (302) ILE320 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence atsdevrknlmdmfrdrqafsehtwkMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavkTiqQhlgqlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllrlaeiarirvkdisrtdggrmlihigrtktlvstagvekalslgvtklverwisvsgvaddpnnylfcRvrKngvaapsatsqlSnSalggifgathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtnvnivmnyirnldsetgamvrlled/tsdevrknlmdmfrdrqafseHTwKMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllrlaeiarirvkdisrtdggrmlihigrtKtlvstagvekalslgvtklverwisvsgvaddpnnylfcRvRKngvaapsatsqlSnSalggifgathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtnvnIvmnyirnltgamvrlled >1pyi_AB: title=CRYSTAL STRUCTURE OF A PPR1-DNA COMPLEX: DNA RECOGNITION BY PROTEINS CONTAINING A ZN2CYS6 BINUCLEAR CLUSTER organism=Saccharomyces cerevisiae DNA sequence DT(E15):DA(D14) DC(E16):DG(D13) DG(E17):DC(D12) DG(E18):DC(D11) DC(E19):DG(D10) DA(E20):DT(D9) DA(E21):DT(D8) DT(E22):DA(D7) DT(E23):DA(D6) DG(E24):DC(D5) DC(E25):DG(D4) DC(E26):DG(D3) DG(E27):DC(D2) DA(E28):DT(D1) chainA ( 11) LYS40 0 0 0 0 0 0 0 0 0 0 0 0 0 2 ( 12) LYS41 0 0 0 0 0 0 0 0 0 0 18 13 12 0 ( 13) ILE42 0 0 0 0 0 0 0 0 0 0 0 0 1 1 chainB ( 11) LYS40 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 12) LYS41 0 6 4 10 0 0 0 0 0 0 0 0 0 0 ( 13) ILE42 2 2 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence srtackrcrlKKIkcdqefpsckrcaklevpcvsldpatgkdvprsyvffledrlavmmrvlkeygvdptkirgnipatsddepfdlk/srtackrcrlKKIkcdqefpsckrcaklevpcvsldpatgkdvprsyvffledrlavmmrvlkeygvdpt >1pzu_BHIM:p53-like_transcription_factors;E_set_domains; title=AN ASYMMETRIC NFAT1-RHR HOMODIMER ON A PSEUDO-PALINDROMIC, KAPPA-B SITE organism=Homo sapiens DNA sequence DT(Y3):DA(X14) DG(Y4):DC(X13) DG(Y5):DC(X12) DA(Y6):DT(X11) DA(Y7):DT(X10) DA(Y8):DT(X9) DT(Y9):DA(X8) DT(Y10):DA(X7) DC(Y11):DG(X6) DC(Y12):DG(X5) DT(Y13):DA(X4) DC(Y14):DG(X3) DA(Z1):DT(X2) DA(Z2):DT(X1) DT(Z3):DA(V14) DG(Z4):DC(V13) DG(Z5):DC(V12) DA(Z6):DT(V11) DA(Z7):DT(V10) DA(Z8):DT(V9) DT(Z9):DA(V8) DT(Z10):DA(V7) DC(Z11):DG(V6) DC(Z12):DG(V5) DT(Z13):DA(V4) DC(Z14):DG(V3) DA(W1):DT(V2) DA(W2):DT(V1) DT(W3):DA(T14) DG(W4):DC(T13) DG(W5):DC(T12) DA(W6):DT(T11) DA(W7):DT(T10) DA(W8):DT(T9) DT(W9):DA(T8) DT(W10):DA(T7) DC(W11):DG(T6) DC(W12):DG(T5) DT(W13):DA(T4) DC(W14):DG(T3) chainB ( 23) ARG421 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 13 5 0 0 0 0 0 0 0 0 ( 26) TYR424 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 6 0 0 0 0 0 0 0 ( 29) GLU427 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 7 0 0 0 0 0 0 0 0 ( 32) ARG430 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 6 4 0 0 0 0 0 0 0 0 0 (139) ARG537 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 (173) GLN571 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 13 1 0 0 0 0 0 0 0 chainH ( 23) ARG421 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 13 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 26) TYR424 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) GLU427 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 32) ARG430 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 8 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (139) ARG537 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (173) GLN571 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 15 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainI ( 23) ARG421 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 26) TYR424 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) GLU427 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 32) ARG430 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 7 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (139) ARG537 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (173) GLN571 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 13 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainM ( 23) ARG421 0 0 0 0 0 0 0 2 13 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 26) TYR424 0 0 0 0 0 0 9 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) GLU427 0 0 0 0 0 0 0 6 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 32) ARG430 0 0 0 0 0 0 0 0 1 8 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (139) ARG537 0 0 5 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (173) GLN571 0 0 0 0 0 0 1 10 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence wplssqsgsyelrievqpkphhRahYetEgsRgavkaptgghpvvqlhgymenkplglqifigtaderilkphafyqvhritgktvtttsyekivgntkvleiplepknnmratidcagilklrnadielrkgetdigRkntrvrlvfrvhipessgrivslqtasnpiecsQelpmverqdtdsclvyggqqmiltgqnftseskvvftekttdgqqiwemeatvdkdksqpnmlfveipeyrnkhirtpvkvnfyvingkrkrsqpqhftyhpv/wplssqsgsyelrievqpkphhRahYetEgsRgavkaptgghpvvqlhgymenkplglqifigtaderilkphafyqvhritgktvtttsyekivgntkvleiplepknnmratidcagilklrnadielrkgetdigRkntrvrlvfrvhipessgrivslqtasnpiecsQelpmverqdtdsclvyggqqmiltgqnftseskvvftekttdgqqiwemeatvdkdksqpnmlfveipeyrnkhirtpvkvnfyvingkrkrsqpqhftyhpv/wplssqsgsyelrievqpkphhRahYetEgsRgavkaptgghpvvqlhgymenkplglqifigtaderilkphafyqvhritgktvtttsyekivgntkvleiplepknnmratidcagilklrnadielrkgetdigRkntrvrlvfrvhipessgrivslqtasnpiecsQelpmverqdtdsclvyggqqmiltgqnftseskvvftekttdgqqiwemeatvdkdksqpnmlfveipeyrnkhirtpvkvnfyvingkrkrsqpqhftyhpv/wplssqsgsyelrievqpkphhRahYetEgsRgavkaptgghpvvqlhgymenkplglqifigtaderilkphafyqvhritgktvtttsyekivgntkvleiplepknnmratidcagilklrnadielrkgetdigRkntrvrlvfrvhipessgrivslqtasnpiecsQelpmverqdtdsclvyggqqmiltgqnftseskvvftekttdgqqiwemeatvdkdksqpnmlfveipeyrnkhirtpvkvnfyvingkrkrsqpqhftyhpv >1pzu_M:p53-like_transcription_factors;E_set_domains; title=AN ASYMMETRIC NFAT1-RHR HOMODIMER ON A PSEUDO-PALINDROMIC, KAPPA-B SITE organism=Homo sapiens DNA sequence DT(Y3):DA(X14) DG(Y4):DC(X13) DG(Y5):DC(X12) DA(Y6):DT(X11) DA(Y7):DT(X10) DA(Y8):DT(X9) DT(Y9):DA(X8) DT(Y10):DA(X7) DC(Y11):DG(X6) DC(Y12):DG(X5) DT(Y13):DA(X4) DC(Y14):DG(X3) DA(Z1):DT(X2) DA(Z2):DT(X1) DT(Z3):DA(V14) DG(Z4):DC(V13) DG(Z5):DC(V12) DA(Z6):DT(V11) DA(Z7):DT(V10) DA(Z8):DT(V9) DT(Z9):DA(V8) DT(Z10):DA(V7) DC(Z11):DG(V6) DC(Z12):DG(V5) DT(Z13):DA(V4) DC(Z14):DG(V3) DA(W1):DT(V2) DA(W2):DT(V1) DT(W3):DA(T14) DG(W4):DC(T13) DG(W5):DC(T12) DA(W6):DT(T11) DA(W7):DT(T10) DA(W8):DT(T9) DT(W9):DA(T8) DT(W10):DA(T7) DC(W11):DG(T6) DC(W12):DG(T5) DT(W13):DA(T4) DC(W14):DG(T3) chainM ( 23) ARG421 0 0 0 0 0 0 0 2 13 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 26) TYR424 0 0 0 0 0 0 9 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) GLU427 0 0 0 0 0 0 0 6 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 32) ARG430 0 0 0 0 0 0 0 0 1 8 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (139) ARG537 0 0 5 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (173) GLN571 0 0 0 0 0 0 1 10 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence wplssqsgsyelrievqpkphhRahYetEgsRgavkaptgghpvvqlhgymenkplglqifigtaderilkphafyqvhritgktvtttsyekivgntkvleiplepknnmratidcagilklrnadielrkgetdigRkntrvrlvfrvhipessgrivslqtasnpiecsQelpmverqdtdsclvyggqqmiltgqnftseskvvftekttdgqqiwemeatvdkdksqpnmlfveipeyrnkhirtpvkvnfyvingkrkrsqpqhftyhpv >1q0t_AB:S-adenosyl-L-methionine-dependent_methyltransferases; title=TERNARY STRUCTURE OF T4DAM WITH ADOHCY AND DNA organism=Enterobacteria phage T4 DNA sequence DA(D422):DT(C413) DC(D423):DG(C412) DA(D424):DT(C411) DG(D425):DC(C410) DG(D426):DC(C409) DA(D427):DT(C408) DT(D428):DA(C407) DC(D429):DG(C406) DC(D430):DG(C405) DT(D431):DA(C404) DG(D432):DC(C403) DT(D433):DA(C402) chainA (135) ASN135 0 0 2 0 0 0 0 0 0 0 0 0 (138) LYS138 0 2 0 0 0 0 0 0 0 0 0 0 chainB prot.sequence mlgaiaytgnkqsllpelkshfpkynrfvdlfcgglsvslnvngpvlandiqepiiemykrlinvswddvlkvikqyklsktskeeflklredynktrdplllyvlhfhgfsnmirindkgnfttpfgkrtinkNseKqynhfkqncdkiifsslhfkdvkildgdfvyvdppylitvadynkfwsedeekdllnlldslndrgikfgqsnvlehhgkentllkewskkynvkhlevyifn/mlgaiaytgnkqsllpelkshfpkynrfvdlfcgglsvslnvngpvlandiqepiiemykrlinvswddvlkvikqyklsktskeeflklredynktrdplllyvlhfhgfsnmirindkgnfttpfgkrtinkNseKqynhfkqncdkiifsslhfkdvkildgdfvyvdppylitvadynkfwsedeekdllnlldslndrgikfgqsnvlehhgkentllkewskkynvkhlevyifn >1q3f_A:Uracil-DNA_glycosylase-like; title=URACIL DNA GLYCOSYLASE BOUND TO A CATIONIC 1-AZA-2'-DEOXYRIBOSE- CONTAINING DNA organism=Homo sapiens DNA sequence DT(B2):DA(C30) DG(B3):DC(C29) DT(B4):DA(C28) NRI(B5):DA(C27) DA(B6):DT(C26) DT(B7):DA(C25) DC(B8):DG(C24) DT(B9):DA(C23) DT(B10):DA(C22) chainA (190) PRO271 0 0 12 0 0 0 0 0 0 (191) LEU272 0 0 42 3 16 0 0 0 0 (194) TYR275 0 0 2 0 0 0 0 0 0 (195) ARG276 0 0 0 0 1 1 0 0 0 prot.sequence meffgeswkkhlsgefgkpyfiklmgfvaeerkhytvyppphqvftwtqmcdikdvkvvilgqdpyhgpnqahglcfsvqrpvppppsleniykelstdiedfvhpghgdlsgwakqgvlllnavltvrahqanshkergweqftdavvswlnqnsnglvfllwgsyaqkkgsaidrkrhhvlqtahpsPLsvYRgffgcrhfsktnellqksgkkpidwkel >1q3u_A:DNA_breaking-rejoining_enzymes;lambda_integrase-like,_N-terminal_domain; title=CRYSTAL STRUCTURE OF A WILD-TYPE CRE RECOMBINASE-LOXP SYNAPSE: PRE- CLEAVAGE COMPLEX organism=Enterobacteria phage P1 DNA sequence DG(C101):DC(D136) DA(C102):DT(D135) DT(C103):DA(D134) DA(C104):DT(D133) DA(C105):DT(D132) DC(C106):DG(D131) UMP(C107):DA(D130) DT(C108):DA(D129) DC(C109):DG(D128) DG(C110):DC(D127) DT(C111):DA(D126) DA(C112):DT(D125) DT(C113):DA(D124) DA(C114):DT(D123) DA(C115):DT(D122) DT(C116):DA(D121) DG(C117):DC(D120) DT(C118):DA(D119) DA(C119):DT(D118) DT(C120):DA(D117) DG(C121):DC(D116) DC(C122):DG(D115) DT(C123):DA(D114) DA(C124):DT(D113) DT(C125):DA(D112) DA(C126):DT(D111) DC(C127):DG(D110) DG(C128):DC(D109) DA(C129):DT(D108) DA(C130):DT(D107) DG(C131):DC(D106) DT(C132):DA(D105) DT(C133):DA(D104) DA(C134):DT(D103) DT(C135):DA(D102) DC(C136):DG(D101) chainA ( 31) HIS40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 5 0 0 0 0 0 0 0 0 0 0 0 ( 32) THR41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 35) MET44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 8 3 0 0 0 0 0 0 0 0 0 0 ( 38) SER47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 ( 77) LYS86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 12 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 78) THR87 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 ( 81) GLN90 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 7 0 0 0 0 0 0 0 0 0 0 0 0 ( 85) GLN94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 (232) ARG241 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 (235) LYS244 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 8 3 (248) SER257 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 (250) ARG259 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19 19 11 0 0 0 0 0 0 0 (251) ALA260 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 (253) GLU262 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 7 0 0 0 0 0 0 0 0 0 (273) ARG282 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 5 0 0 0 0 0 0 0 0 0 0 (308) ASN317 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence nlpalpvdatsdevrknlmdmfrdrqafseHTwkMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmlihigrtktlvstagvekalslgvtklverwisvsgvaddpnnylfcRvrKngvaapsatsqlStRAlEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtNvnivmnyirnldsetgamvrlled >1q9x_D:DNA/RNA_polymerases;Ribonuclease_H-like; title=CRYSTAL STRUCTURE OF ENTEROBACTERIA PHAGE RB69 GP43 DNA POLYMERASE COMPLEXED WITH TETRAHYDROFURAN CONTAINING DNA organism=Enterobacteria phage RB69 DNA sequence DG(L940):DC(H926) DC(L941):DG(H925) DG(L942):DC(H924) DG(L943):DC(H923) DA(L944):DT(H922) DC(L945):DG(H921) DT(L946):DA(H920) DG(L947):DC(H919) DC(L948):DG(H918) DT(L949):DA(H917) DT(L950):DA(H916) DA(L951):DT(H915) DC(L952):DG(H914) chainD (706) LYS706 0 0 0 0 0 0 0 0 0 0 0 5 7 (734) LYS734 0 0 0 0 0 0 0 0 0 0 1 0 0 (800) LYS800 0 0 0 0 0 5 3 0 0 0 0 0 0 prot.sequence mkefyltveqigdsiferyidsngrertreveykpslfahcpesqatkyfdiygkpctrklfanmrdasqwikrmediglealgmddfklaylsdtynyeikydhtkirvanfdievtspdgfpepsqakhpidaithydsiddrfyvfdllnspygnveewsieiaaklqeqggdevpseiidkiiympfdnekellmeylnfwqqktpviltgwnvesfaipyvynriknifgestakrlsphrktrvkvienmygsreiitlfgisvldyidlykkfsftnqpsysldyisefelnvgklkydgpisklresnhqryisyniiavyrvlqidakrqfinlsldmgyyakiqiqsvfspiktwdaiifnslkeqnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiagtfkvaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlaaqrngeiikealhnpnlsvdepldvdyrfdfsdeikekikklsakslnemlfraqrtevagmtaqinrkllinslygalgnvwfryydlrnataittfgqmalqwierkvneylnevcgtegeafvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarermepaidrgfremceymnnkqhlmfmdreaiagpplgskgiggfwtgkKryalnvwdmegtryaepklkimgletqKsstpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisiasvssanniakydvggfpgpKcpfhirgiltynraikgnidapqvvegekvyvlplregnpfgdkciawpsgteitdlikddvlhwmdytvllektfikplegftsaakldyekkaslfdmfdf >1q9y_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=CRYSTAL STRUCTURE OF ENTEROBACTERIA PHAGE RB69 GP43 DNA POLYMERASE COMPLEXED WITH 8-OXOGUANOSINE CONTAINING DNA organism=Enterobacteria phage RB69 DNA sequence DG(T911):DC(P937) DT(T912):DA(P936) DA(T913):DT(P935) DA(T914):DT(P934) DG(T915):DC(P933) DC(T916):DG(P932) DA(T917):DT(P931) DG(T918):DC(P930) DT(T919):DA(P929) DC(T920):DG(P928) DC(T921):DG(P927) DG(T922):DC(P926) DC(T923):DG(P925) chainA (709) LYS709 6 4 0 0 0 0 0 0 0 0 0 0 0 (737) LYS737 0 0 1 2 0 0 0 0 0 0 0 0 0 (803) LYS803 0 0 0 0 0 0 3 3 0 0 0 0 0 prot.sequence hgsmkefyltveqigdsiferyidsngrertreveykpslfahcpesqatkyfdiygkpctrklfanmrdasqwikrmediglealgmddfklaylsdtynyeikydhtkirvanfdievtspdgfpepsqakhpidaithydsiddrfyvfdllnspygnveewsieiaaklqeqggdevpseiidkiiympfdnekellmeylnfwqqktpviltgwnvesfaipyvynriknifgestakrlsphrktrvkvienmygsreiitlfgisvldyidlykkfsftnqpsysldyisefelnvgklkydgpisklresnhqryisyniiavyrvlqidakrqfinlsldmgyyakiqiqsvfspiktwdaiifnslkeqnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiagtfkvaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlaaqrngeiikealhnpnlsvdepldvdyrfdfsdeikekikklsakslnemlfraqrtevagmtaqinrkllinslygalgnvwfryydlrnataittfgqmalqwierkvneylnevcgtegeafvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarermepaidrgfremceymnnkqhlmfmdreaiagpplgskgiggfwtgkKryalnvwdmegtryaepklkimgletqKsstpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisiasvssanniakydvggfpgpKcpfhirgiltynraikgnidapqvvegekvyvlplregnpfgdkciawpsgteitdlikddvlhwmdytvllektfikplegftsaakldyekkaslfd >1qai_AB: title=CRYSTAL STRUCTURES OF THE N-TERMINAL FRAGMENT FROM MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE COMPLEXED WITH NUCLEIC ACID: FUNCTIONAL IMPLICATIONS FOR TEMPLATE-PRIMER BINDING TO THE FINGERS DOMAIN organism=Moloney murine leukemia virus DNA sequence DC(D1):DG(C8) DA(D2):DT(C7) DT(D3):DA(C6) DG(D4):DC(C5) DC(D5):DG(C4) DA(D6):DT(C3) DT(D7):DA(C2) DG(D8):DC(C1) chainA ( 76) LEU99 0 0 0 0 0 0 0 9 ( 91) ASP114 0 0 0 0 0 0 0 16 ( 93) ARG116 0 0 0 0 0 4 9 7 chainB ( 41) TYR64 10 0 0 0 0 0 0 0 ( 76) LEU99 17 0 0 0 0 0 0 0 ( 91) ASP114 13 0 0 0 0 0 0 0 ( 93) ARG116 6 9 3 0 0 0 0 0 prot.sequence twlsdfpqawaetggmglavrqapliiplkatstpvsikqypmsqearlgikphiqrlldqgilvpcqspwntplLpvkkpgtndyrpvqDlRevnkrvedihptvpnpynllsglppshqwytvldlkdaffclrlhptsqplfafewrdpemgisgqltwtrlpqgfknsptlfdealhrdladfriqhpdlillqyvddlllaatseldcqqgtrallqtlgnlgyrasakkaqicqkqvkylgyllk/twlsdfpqawaetggmglavrqapliiplkatstpvsikqYpmsqearlgikphiqrlldqgilvpcqspwntplLpvkkpgtndyrpvqDlRevnkrvedihptvpnpynllsglppshqwytvldlkdaffclrlhptsqplfafewrdpemgisgqltwtrlpqgfknsptlfdealhrdladfriqhpdlillqyvddlllaatseldcqqgtrallqtlgnlgyrasakkaqicqkqvkylgyllk >1qai_B:DNA/RNA_polymerases; title=CRYSTAL STRUCTURES OF THE N-TERMINAL FRAGMENT FROM MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE COMPLEXED WITH NUCLEIC ACID: FUNCTIONAL IMPLICATIONS FOR TEMPLATE-PRIMER BINDING TO THE FINGERS DOMAIN organism=Moloney murine leukemia virus DNA sequence DC(C1):DG(D8) DA(C2):DT(D7) DT(C3):DA(D6) DG(C4):DC(D5) DC(C5):DG(D4) DA(C6):DT(D3) DT(C7):DA(D2) DG(C8):DC(D1) chainB ( 41) TYR64 0 0 0 0 0 0 0 10 ( 76) LEU99 0 0 0 0 0 0 0 17 ( 91) ASP114 0 0 0 0 0 0 0 13 ( 93) ARG116 0 0 0 0 0 3 9 6 prot.sequence twlsdfpqawaetggmglavrqapliiplkatstpvsikqYpmsqearlgikphiqrlldqgilvpcqspwntplLpvkkpgtndyrpvqDlRevnkrvedihptvpnpynllsglppshqwytvldlkdaffclrlhptsqplfafewrdpemgisgqltwtrlpqgfknsptlfdealhrdladfriqhpdlillqyvddlllaatseldcqqgtrallqtlgnlgyrasakkaqicqkqvkylgyllk >1qaj_A:DNA/RNA_polymerases; title=CRYSTAL STRUCTURES OF THE N-TERMINAL FRAGMENT FROM MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE COMPLEXED WITH NUCLEIC ACID: FUNCTIONAL IMPLICATIONS FOR TEMPLATE-PRIMER BINDING TO THE FINGERS DOMAIN organism=Moloney murine leukemia virus DNA sequence DC(D1):DG(C8) DA(D2):DT(C7) DT(D3):DA(C6) DG(D4):DC(C5) DC(D5):DG(C4) DA(D6):DT(C3) DT(D7):DA(C2) DG(D8):DC(C1) chainA ( 80) LEU99 0 0 0 0 0 0 0 10 ( 82) VAL101 0 0 0 0 0 0 0 3 ( 93) VAL112 0 0 0 0 0 0 0 6 ( 95) ASP114 0 0 0 0 0 0 0 6 ( 97) ARG116 0 0 0 0 0 5 11 4 prot.sequence gshmtwlsdfpqawaetggmglavrqapliiplkatstpvsikqypmsqearlgikphiqrlldqgilvpcqspwntplLpVkkpgtndyrpVqDlRevnkrvedihptvpnpynllsglppshqwytvldlkdaffclrlhptsqplfafewrdpemgisgqltwtrlpqgfknsptlfdealhrdladfriqhpdlillqyvddlllaatseldcqqgtrallqtlgnlgyrasakkaqicqkqvkylgyllkegqr >1qln_A:DNA/RNA_polymerases; title=STRUCTURE OF A TRANSCRIBING T7 RNA POLYMERASE INITIATION COMPLEX organism=BACTERIOPHAGE T7 DNA sequence DA(T9):DT(N114) DG(T10):DC(N113) DT(T11):DA(N112) DG(T12):DC(N111) DA(T13):DT(N110) DG(T14):DC(N109) DT(T15):DA(N108) DC(T16):DG(N107) DG(T17):DC(N106) DT(T18):DA(N105) DA(T19):DT(N104) DT(T20):DA(N103) DT(T21):DA(N102) DA(T22):DT(N101) chainA ( 75) ARG96 0 0 0 0 0 0 0 0 0 0 0 7 10 14 ( 77) LYS98 0 0 0 0 0 0 0 0 2 8 2 0 0 0 (114) GLN135 6 0 0 0 0 0 0 0 0 0 0 0 0 0 (118) SER139 6 0 0 0 0 0 0 0 0 0 0 0 0 0 (185) LYS206 10 0 0 0 0 0 0 0 0 0 0 0 0 0 (210) ARG231 0 0 1 0 0 0 0 0 0 0 0 0 0 0 (213) ALA234 1 0 0 0 0 0 0 0 0 0 0 0 0 0 (216) VAL237 0 18 0 0 0 0 0 0 0 0 0 0 0 0 (219) ASP240 0 9 0 0 0 0 0 0 0 0 0 0 0 0 (725) ARG746 0 0 18 10 0 0 0 0 0 0 0 0 0 0 (727) ASN748 0 0 0 0 0 0 1 8 2 0 0 0 0 0 (735) ARG756 0 0 0 0 9 11 6 0 0 0 0 0 0 0 (737) GLN758 0 0 0 9 9 0 0 0 0 0 0 0 0 0 (739) THR760 0 0 1 0 0 0 0 0 0 0 0 0 0 0 (740) ILE761 2 0 0 0 0 0 0 0 0 0 0 0 0 0 (741) ASN762 4 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence iakndfsdielaaipfntladhygerlareqlalehesyemgearfrkmfplittllpkmiarindwfeevkakRgKrptafqflqeikpeavayitikttlacltsadnttvQavaSaigraiedearfgrirdleakhfkknveeqlnkrvghvykkafmqvveadmlskgllggeawsswhKedsihvgvrciemliestgmvslhRqnAgvVgqDsetielapeyaeaiatragalagispmfqpcvvppkpwtgitgggywangrrplalvrthskkalmryedvympevykainiaqntawkinkkvlavanvitkwkhcpvedipaiereelpmkpedidmnpealtawkraaaavyrkdkarksrrislefmleqankfanhkaiwfpynmdwrgrvyavsmfnpqgndmtkglltlakgkpigkegyywlkihgancagvdkvpfperikfieenhenimacaksplentwwaeqdspfcflafcfeyagvqhhglsyncslplafdgscsgiqhfsamlrdevggravnllpsetvqdiygivakkvneilqadaingtdnevvtvtdentgeisekvklgtkalagqwlaygvtrsvtkrsvmtlaygskefgfrqqvledtiqpaidsgkglmftqpnqaagymakliwesvsvtvvaaveamnwlksaakllaaevkdkktgeilrkrcavhwvtpdgfpvwqeykkpiqtRlNlmflgqfRlQpTINtnkdseidahkqesgiapnfvhsqdgshlrktvvwahekygiesfalihdsfgtipadaanlfkavretmvdtyescdvladfydqfadqlhesqldkmpalpakgnlnlrdilesdfafa >1qn3_A:TATA-box_binding_protein-like; title=CRYSTAL STRUCTURE OF THE C(-25) ADENOVIRUS MAJOR LATE PROMOTER TATA BOX VARIANT BOUND TO WILD-TYPE TBP (ARABIDOPSIS THALIANA TBP ISOFORM 2). TATA ELEMENT RECOGNITION BY THE TATA BOX-BINDING PROTEIN HAS BEEN CONSERVED THROUGHOUT EVOLUTION. organism=ARABIDOPSIS THALIANA DNA sequence DG(C201):DC(D228) DC(C202):DG(D227) DT(C203):DA(D226) DA(C204):DT(D225) DT(C205):DA(D224) DA(C206):DT(D223) DA(C207):DT(D222) DA(C208):DT(D221) DC(C209):DG(D220) DG(C210):DC(D219) DG(C211):DC(D218) DG(C212):DC(D217) DC(C213):DG(D216) DA(C214):DT(D215) chainA ( 12) ASN27 0 0 0 0 0 8 5 0 0 0 0 0 0 0 ( 14) VAL29 0 0 0 0 0 0 5 2 0 0 0 0 0 0 ( 42) PHE57 0 0 0 0 0 0 0 0 16 7 0 0 0 0 ( 57) LEU72 0 0 0 0 0 0 0 1 2 0 0 0 0 0 ( 59) PHE74 0 0 0 0 0 0 0 0 5 0 0 0 0 0 ( 65) VAL80 0 0 0 0 0 0 0 2 1 0 0 0 0 0 ( 67) THR82 0 0 0 0 0 0 1 2 0 0 0 0 0 0 (102) ASN117 0 0 0 0 0 5 6 0 0 0 0 0 0 0 (104) VAL119 0 0 0 0 2 5 0 0 0 0 0 0 0 0 (133) PHE148 0 0 8 24 0 0 0 0 0 0 0 0 0 0 (134) PRO149 0 0 5 0 0 0 0 0 0 0 0 0 0 0 (148) LEU163 0 0 0 3 2 0 0 0 0 0 0 0 0 0 (150) PHE165 0 0 0 5 0 0 0 0 0 0 0 0 0 0 (156) VAL171 0 0 0 1 4 0 0 0 0 0 0 0 0 0 (158) THR173 0 0 0 0 2 8 0 0 0 0 0 0 0 0 prot.sequence khpsgivptlqNiVstvnldckldlkaialqarnaeynpkrFaavimrirepkttaLiFasgkmVcTgaksedfskmaarkyarivqklgfpakfkdfkiqNiVgscdvkfpirleglayshaafssyepelFPgliyrmkvpkivlLiFvsgkiViTgakmrdetykafeniypvlsefrki >1qn4_A:TATA-box_binding_protein-like; title=CRYSTAL STRUCTURE OF THE T(-24) ADENOVIRUS MAJOR LATE PROMOTER TATA BOX VARIANT BOUND TO WILD-TYPE TBP (ARABIDOPSIS THALIANA TBP ISOFORM 2). TATA ELEMENT RECOGNITION BY THE TATA BOX-BINDING PROTEIN HAS BEEN CONSERVED THROUGHOUT EVOLUTION. organism=ARABIDOPSIS THALIANA DNA sequence DG(C201):DC(D228) DC(C202):DG(D227) DT(C203):DA(D226) DA(C204):DT(D225) DT(C205):DA(D224) DA(C206):DT(D223) DA(C207):DT(D222) DA(C208):DT(D221) DA(C209):DT(D220) DT(C210):DA(D219) DG(C211):DC(D218) DG(C212):DC(D217) DC(C213):DG(D216) DA(C214):DT(D215) chainA ( 12) ASN27 0 0 0 0 0 8 5 0 0 0 0 0 0 0 ( 14) VAL29 0 0 0 0 0 0 5 2 0 0 0 0 0 0 ( 42) PHE57 0 0 0 0 0 0 0 0 23 10 0 0 0 0 ( 57) LEU72 0 0 0 0 0 0 0 2 3 0 0 0 0 0 ( 59) PHE74 0 0 0 0 0 0 0 0 5 0 0 0 0 0 ( 65) VAL80 0 0 0 0 0 0 0 3 3 0 0 0 0 0 ( 67) THR82 0 0 0 0 0 0 1 1 0 0 0 0 0 0 (102) ASN117 0 0 0 0 0 4 6 0 0 0 0 0 0 0 (104) VAL119 0 0 0 0 2 5 0 0 0 0 0 0 0 0 (133) PHE148 0 0 8 28 0 0 0 0 0 0 0 0 0 0 (134) PRO149 0 3 6 0 0 0 0 0 0 0 0 0 0 0 (148) LEU163 0 0 0 3 2 0 0 0 0 0 0 0 0 0 (150) PHE165 0 0 0 5 0 0 0 0 0 0 0 0 0 0 (156) VAL171 0 0 0 1 4 0 0 0 0 0 0 0 0 0 (158) THR173 0 0 0 0 2 6 0 0 0 0 0 0 0 0 prot.sequence khpsgivptlqNiVstvnldckldlkaialqarnaeynpkrFaavimrirepkttaLiFasgkmVcTgaksedfskmaarkyarivqklgfpakfkdfkiqNiVgscdvkfpirleglayshaafssyepelFPgliyrmkvpkivlLiFvsgkiViTgakmrdetykafeniypvlsefrki >1qn5_B:TATA-box_binding_protein-like; title=CRYSTAL STRUCTURE OF THE G(-26) ADENOVIRUS MAJOR LATE PROMOTER TATA BOX VARIANT BOUND TO WILD-TYPE TBP (ARABIDOPSIS THALIANA TBP ISOFORM 2). TATA ELEMENT RECOGNITION BY THE TATA BOX-BINDING PROTEIN HAS BEEN CONSERVED THROUGHOUT EVOLUTION. organism=ARABIDOPSIS THALIANA DNA sequence DT(F215):DA(E214) DG(F216):DC(E213) DC(F217):DG(E212) DC(F218):DG(E211) DC(F219):DG(E210) DT(F220):DA(E209) DC(F221):DG(E208) DT(F222):DA(E207) DT(F223):DA(E206) DA(F224):DT(E205) DT(F225):DA(E204) DA(F226):DT(E203) DG(F227):DC(E202) DC(F228):DG(E201) chainB ( 16) ASN27 0 0 0 0 0 0 0 5 8 0 0 0 0 0 ( 18) VAL29 0 0 0 0 0 0 4 5 0 0 0 0 0 0 ( 46) PHE57 0 0 0 0 8 17 0 0 0 0 0 0 0 0 ( 61) LEU72 0 0 0 0 0 4 0 0 0 0 0 0 0 0 ( 63) PHE74 0 0 0 0 0 5 0 0 0 0 0 0 0 0 ( 69) VAL80 0 0 0 0 0 3 3 0 0 0 0 0 0 0 ( 71) THR82 0 0 0 0 0 0 5 2 0 0 0 0 0 0 (106) ASN117 0 0 0 0 0 0 0 6 5 0 0 0 0 0 (108) VAL119 0 0 0 0 0 0 0 0 5 2 0 0 0 0 (137) PHE148 0 0 0 0 0 0 0 0 0 0 26 11 0 0 (138) PRO149 0 0 0 0 0 0 0 0 0 0 0 6 0 0 (152) LEU163 0 0 0 0 0 0 0 0 0 4 3 0 0 0 (154) PHE165 0 0 0 0 0 0 0 0 0 0 5 0 0 0 (160) VAL171 0 0 0 0 0 0 0 0 0 5 3 0 0 0 (162) THR173 0 0 0 0 0 0 0 0 6 1 0 0 0 0 prot.sequence vdlskhpsgivptlqNiVstvnldckldlkaialqarnaeynpkrFaavimrirepkttaLiFasgkmVcTgaksedfskmaarkyarivqklgfpakfkdfkiqNiVgscdvkfpirleglayshaafssyepelFPgliyrmkvpkivlLiFvsgkiViTgakmrdetykafeniypvlsefrk >1qn6_B:TATA-box_binding_protein-like; title=CRYSTAL STRUCTURE OF THE T(-26) ADENOVIRUS MAJOR LATE PROMOTER TATA BOX VARIANT BOUND TO WILD-TYPE TBP (ARABIDOPSIS THALIANA TBP ISOFORM 2). TATA ELEMENT RECOGNITION BY THE TATA BOX-BINDING PROTEIN HAS BEEN CONSERVED THROUGHOUT EVOLUTION. organism=ARABIDOPSIS THALIANA DNA sequence DT(F215):DA(E214) DG(F216):DC(E213) DC(F217):DG(E212) DC(F218):DG(E211) DC(F219):DG(E210) DT(F220):DA(E209) DA(F221):DT(E208) DT(F222):DA(E207) DT(F223):DA(E206) DA(F224):DT(E205) DT(F225):DA(E204) DA(F226):DT(E203) DG(F227):DC(E202) DC(F228):DG(E201) chainB ( 16) ASN27 0 0 0 0 0 0 0 5 8 0 0 0 0 0 ( 18) VAL29 0 0 0 0 0 0 2 5 0 0 0 0 0 0 ( 46) PHE57 0 0 0 0 11 18 0 0 0 0 0 0 0 0 ( 61) LEU72 0 0 0 0 0 3 3 0 0 0 0 0 0 0 ( 63) PHE74 0 0 0 0 0 5 0 0 0 0 0 0 0 0 ( 69) VAL80 0 0 0 0 0 2 3 0 0 0 0 0 0 0 ( 71) THR82 0 0 0 0 0 0 2 2 0 0 0 0 0 0 (106) ASN117 0 0 0 0 0 0 0 7 4 0 0 0 0 0 (108) VAL119 0 0 0 0 0 0 0 0 5 2 0 0 0 0 (137) PHE148 0 0 0 0 0 0 0 0 0 0 27 8 0 0 (138) PRO149 0 0 0 0 0 0 0 0 0 0 0 5 0 0 (152) LEU163 0 0 0 0 0 0 0 0 0 3 3 0 0 0 (154) PHE165 0 0 0 0 0 0 0 0 0 0 5 0 0 0 (160) VAL171 0 0 0 0 0 0 0 0 0 6 3 0 0 0 (162) THR173 0 0 0 0 0 0 0 0 8 2 0 0 0 0 prot.sequence vdlskhpsgivptlqNiVstvnldckldlkaialqarnaeynpkrFaavimrirepkttaLiFasgkmVcTgaksedfskmaarkyarivqklgfpakfkdfkiqNiVgscdvkfpirleglayshaafssyepelFPgliyrmkvpkivlLiFvsgkiViTgakmrdetykafeniypvlsefrki >1qn7_B:TATA-box_binding_protein-like; title=CRYSTAL STRUCTURE OF THE T(-27) ADENOVIRUS MAJOR LATE PROMOTER TATA BOX VARIANT BOUND TO WILD-TYPE TBP (ARABIDOPSIS THALIANA TBP ISOFORM 2). TATA ELEMENT RECOGNITION BY THE TATA BOX-BINDING PROTEIN HAS BEEN CONSERVED THROUGHOUT EVOLUTION. organism=ARABIDOPSIS THALIANA DNA sequence DT(F215):DA(E214) DG(F216):DC(E213) DC(F217):DG(E212) DC(F218):DG(E211) DC(F219):DG(E210) DT(F220):DA(E209) DT(F221):DA(E208) DA(F222):DT(E207) DT(F223):DA(E206) DA(F224):DT(E205) DT(F225):DA(E204) DA(F226):DT(E203) DG(F227):DC(E202) DC(F228):DG(E201) chainB ( 16) ASN27 0 0 0 0 0 0 0 6 9 0 0 0 0 0 ( 18) VAL29 0 0 0 0 0 0 2 6 0 0 0 0 0 0 ( 46) PHE57 0 0 0 0 7 16 0 0 0 0 0 0 0 0 ( 61) LEU72 0 0 0 0 0 3 2 0 0 0 0 0 0 0 ( 63) PHE74 0 0 0 0 0 5 0 0 0 0 0 0 0 0 ( 69) VAL80 0 0 0 0 0 4 4 0 0 0 0 0 0 0 ( 71) THR82 0 0 0 0 0 0 3 4 0 0 0 0 0 0 (106) ASN117 0 0 0 0 0 0 0 8 5 0 0 0 0 0 (108) VAL119 0 0 0 0 0 0 0 0 5 2 0 0 0 0 (137) PHE148 0 0 0 0 0 0 0 0 0 0 24 11 0 0 (138) PRO149 0 0 0 0 0 0 0 0 0 0 0 7 3 0 (152) LEU163 0 0 0 0 0 0 0 0 0 4 3 0 0 0 (154) PHE165 0 0 0 0 0 0 0 0 0 0 5 0 0 0 (160) VAL171 0 0 0 0 0 0 0 0 0 5 3 0 0 0 (162) THR173 0 0 0 0 0 0 0 0 9 2 0 0 0 0 prot.sequence vdlskhpsgivptlqNiVstvnldckldlkaialqarnaeynpkrFaavimrirepkttaLiFasgkmVcTgaksedfskmaarkyarivqklgfpakfkdfkiqNiVgscdvkfpirleglayshaafssyepelFPgliyrmkvpkivlLiFvsgkiViTgakmrdetykafeniypvlsefrk >1qn8_B:TATA-box_binding_protein-like; title=CRYSTAL STRUCTURE OF THE T(-28) ADENOVIRUS MAJOR LATE PROMOTER TATA BOX VARIANT BOUND TO WILD-TYPE TBP (ARABIDOPSIS THALIANA TBP ISOFORM 2). TATA ELEMENT RECOGNITION BY THE TATA BOX-BINDING PROTEIN HAS BEEN CONSERVED THROUGHOUT EVOLUTION. organism=ARABIDOPSIS THALIANA DNA sequence DT(F215):DA(E214) DG(F216):DC(E213) DC(F217):DG(E212) DC(F218):DG(E211) DC(F219):DG(E210) DT(F220):DA(E209) DT(F221):DA(E208) DT(F222):DA(E207) DA(F223):DT(E206) DA(F224):DT(E205) DT(F225):DA(E204) DA(F226):DT(E203) DG(F227):DC(E202) DC(F228):DG(E201) chainB ( 16) ASN27 0 0 0 0 0 0 0 5 6 0 0 0 0 0 ( 18) VAL29 0 0 0 0 0 0 2 5 0 0 0 0 0 0 ( 46) PHE57 0 0 0 0 10 18 0 0 0 0 0 0 0 0 ( 61) LEU72 0 0 0 0 0 3 2 0 0 0 0 0 0 0 ( 63) PHE74 0 0 0 0 0 6 0 0 0 0 0 0 0 0 ( 69) VAL80 0 0 0 0 0 3 3 0 0 0 0 0 0 0 ( 71) THR82 0 0 0 0 0 0 3 2 0 0 0 0 0 0 (106) ASN117 0 0 0 0 0 0 0 5 5 0 0 0 0 0 (108) VAL119 0 0 0 0 0 0 0 0 5 2 0 0 0 0 (137) PHE148 0 0 0 0 0 0 0 0 0 0 27 11 0 0 (138) PRO149 0 0 0 0 0 0 0 0 0 0 0 5 0 0 (152) LEU163 0 0 0 0 0 0 0 0 0 3 3 0 0 0 (154) PHE165 0 0 0 0 0 0 0 0 0 0 5 0 0 0 (160) VAL171 0 0 0 0 0 0 0 0 0 4 3 0 0 0 (162) THR173 0 0 0 0 0 0 0 0 5 2 0 0 0 0 prot.sequence vdlskhpsgivptlqNiVstvnldckldlkaialqarnaeynpkrFaavimrirepkttaLiFasgkmVcTgaksedfskmaarkyarivqklgfpakfkdfkiqNiVgscdvkfpirleglayshaafssyepelFPgliyrmkvpkivlLiFvsgkiViTgakmrdetykafeniypvlsefrki >1qn9_B:TATA-box_binding_protein-like; title=CRYSTAL STRUCTURE OF THE C(-29) ADENOVIRUS MAJOR LATE PROMOTER TATA BOX VARIANT BOUND TO WILD-TYPE TBP (ARABIDOPSIS THALIANA TBP ISOFORM 2). TATA ELEMENT RECOGNITION BY THE TATA BOX-BINDING PROTEIN HAS BEEN CONSERVED THROUGHOUT EVOLUTION. organism=ARABIDOPSIS THALIANA DNA sequence DT(F215):DA(E214) DG(F216):DC(E213) DC(F217):DG(E212) DC(F218):DG(E211) DC(F219):DG(E210) DT(F220):DA(E209) DT(F221):DA(E208) DT(F222):DA(E207) DT(F223):DA(E206) DG(F224):DC(E205) DT(F225):DA(E204) DA(F226):DT(E203) DG(F227):DC(E202) DC(F228):DG(E201) chainB ( 16) ASN27 0 0 0 0 0 0 0 5 9 0 0 0 0 0 ( 18) VAL29 0 0 0 0 0 0 2 5 0 0 0 0 0 0 ( 46) PHE57 0 0 0 0 7 19 0 0 0 0 0 0 0 0 ( 61) LEU72 0 0 0 0 0 3 1 0 0 0 0 0 0 0 ( 63) PHE74 0 0 0 0 0 7 0 0 0 0 0 0 0 0 ( 69) VAL80 0 0 0 0 0 2 2 0 0 0 0 0 0 0 ( 71) THR82 0 0 0 0 0 0 1 1 0 0 0 0 0 0 (106) ASN117 0 0 0 0 0 0 0 6 5 0 0 0 0 0 (108) VAL119 0 0 0 0 0 0 0 0 5 3 0 0 0 0 (137) PHE148 0 0 0 0 0 0 0 0 0 0 16 7 0 0 (138) PRO149 0 0 0 0 0 0 0 0 0 0 0 6 0 0 (152) LEU163 0 0 0 0 0 0 0 0 0 3 3 0 0 0 (154) PHE165 0 0 0 0 0 0 0 0 0 0 5 0 0 0 (160) VAL171 0 0 0 0 0 0 0 0 0 4 1 0 0 0 (162) THR173 0 0 0 0 0 0 0 0 7 3 0 0 0 0 prot.sequence vdlskhpsgivptlqNiVstvnldckldlkaialqarnaeynpkrFaavimrirepkttaLiFasgkmVcTgaksedfskmaarkyarivqklgfpakfkdfkiqNiVgscdvkfpirleglayshaafssyepelFPgliyrmkvpkivlLiFvsgkiViTgakmrdetykafeniypvlsefrk >1qnb_A:TATA-box_binding_protein-like; title=CRYSTAL STRUCTURE OF THE T(-25) ADENOVIRUS MAJOR LATE PROMOTER TATA BOX VARIANT BOUND TO WILD-TYPE TBP (ARABIDOPSIS THALIANA TBP ISOFORM 2). TATA ELEMENT RECOGNITION BY THE TATA BOX-BINDING PROTEIN HAS BEEN CONSERVED THROUGHOUT EVOLUTION. organism=ARABIDOPSIS THALIANA DNA sequence DT(D215):DA(C214) DG(D216):DC(C213) DC(D217):DG(C212) DC(D218):DG(C211) DC(D219):DG(C210) DA(D220):DT(C209) DT(D221):DA(C208) DT(D222):DA(C207) DT(D223):DA(C206) DA(D224):DT(C205) DT(D225):DA(C204) DA(D226):DT(C203) DG(D227):DC(C202) DC(D228):DG(C201) chainA ( 12) ASN27 0 0 0 0 0 0 0 5 10 0 0 0 0 0 ( 14) VAL29 0 0 0 0 0 0 2 5 0 0 0 0 0 0 ( 42) PHE57 0 0 0 0 8 28 0 0 0 0 0 0 0 0 ( 57) LEU72 0 0 0 0 0 3 2 0 0 0 0 0 0 0 ( 59) PHE74 0 0 0 0 0 5 0 0 0 0 0 0 0 0 ( 65) VAL80 0 0 0 0 0 3 3 0 0 0 0 0 0 0 ( 67) THR82 0 0 0 0 0 0 2 2 0 0 0 0 0 0 (102) ASN117 0 0 0 0 0 0 0 6 5 0 0 0 0 0 (104) VAL119 0 0 0 0 0 0 0 0 5 2 0 0 0 0 (133) PHE148 0 0 0 0 0 0 0 0 0 0 23 12 0 0 (134) PRO149 0 0 0 0 0 0 0 0 0 0 0 6 0 0 (148) LEU163 0 0 0 0 0 0 0 0 0 3 3 0 0 0 (150) PHE165 0 0 0 0 0 0 0 0 0 0 5 0 0 0 (156) VAL171 0 0 0 0 0 0 0 0 0 5 1 0 0 0 (158) THR173 0 0 0 0 0 0 0 0 7 2 0 0 0 0 prot.sequence khpsgivptlqNiVstvnldckldlkaialqarnaeynpkrFaavimrirepkttaLiFasgkmVcTgaksedfskmaarkyarivqklgfpakfkdfkiqNiVgscdvkfpirleglayshaafssyepelFPgliyrmkvpkivlLiFvsgkiViTgakmrdetykafeniypvlsefrki >1qnc_A:TATA-box_binding_protein-like; title=CRYSTAL STRUCTURE OF THE A(-31) ADENOVIRUS MAJOR LATE PROMOTER TATA BOX VARIANT BOUND TO WILD-TYPE TBP (ARABIDOPSIS THALIANA TBP ISOFORM 2). TATA ELEMENT RECOGNITION BY THE TATA BOX-BINDING PROTEIN HAS BEEN CONSERVED THROUGHOUT EVOLUTION. organism=ARABIDOPSIS THALIANA DNA sequence DT(D215):DA(C214) DG(D216):DC(C213) DC(D217):DG(C212) DC(D218):DG(C211) DC(D219):DG(C210) DT(D220):DA(C209) DT(D221):DA(C208) DT(D222):DA(C207) DT(D223):DA(C206) DA(D224):DT(C205) DT(D225):DA(C204) DT(D226):DA(C203) DG(D227):DC(C202) DC(D228):DG(C201) chainA ( 12) ASN27 0 0 0 0 0 0 0 5 9 0 0 0 0 0 ( 14) VAL29 0 0 0 0 0 0 2 5 0 0 0 0 0 0 ( 42) PHE57 0 0 0 0 6 16 0 0 0 0 0 0 0 0 ( 57) LEU72 0 0 0 0 0 4 2 0 0 0 0 0 0 0 ( 59) PHE74 0 0 0 0 0 6 0 0 0 0 0 0 0 0 ( 65) VAL80 0 0 0 0 0 1 3 0 0 0 0 0 0 0 ( 67) THR82 0 0 0 0 0 0 1 2 0 0 0 0 0 0 (102) ASN117 0 0 0 0 0 0 0 6 4 0 0 0 0 0 (104) VAL119 0 0 0 0 0 0 0 0 5 2 0 0 0 0 (133) PHE148 0 0 0 0 0 0 0 0 0 0 26 8 0 0 (134) PRO149 0 0 0 0 0 0 0 0 0 0 0 4 0 0 (148) LEU163 0 0 0 0 0 0 0 0 0 3 3 0 0 0 (150) PHE165 0 0 0 0 0 0 0 0 0 0 5 0 0 0 (156) VAL171 0 0 0 0 0 0 0 0 0 4 1 0 0 0 (158) THR173 0 0 0 0 0 0 0 0 6 2 0 0 0 0 prot.sequence khpsgivptlqNiVstvnldckldlkaialqarnaeynpkrFaavimrirepkttaLiFasgkmVcTgaksedfskmaarkyarivqklgfpakfkdfkiqNiVgscdvkfpirleglayshaafssyepelFPgliyrmkvpkivlLiFvsgkiViTgakmrdetykafeniypvlsefrki >1qne_B:TATA-box_binding_protein-like; title=CRYSTAL STRUCTURE OF THE ADENOVIRUS MAJOR LATE PROMOTER TATA BOX BOUND TO WILD-TYPE TBP (ARABIDOPSIS THALIANA TBP ISOFORM 2). organism=ARABIDOPSIS THALIANA DNA sequence DT(F215):DA(E214) DG(F216):DC(E213) DC(F217):DG(E212) DC(F218):DG(E211) DC(F219):DG(E210) DT(F220):DA(E209) DT(F221):DA(E208) DT(F222):DA(E207) DT(F223):DA(E206) DA(F224):DT(E205) DT(F225):DA(E204) DA(F226):DT(E203) DG(F227):DC(E202) DC(F228):DG(E201) chainB ( 17) ASN27 0 0 0 0 0 0 0 5 9 0 0 0 0 0 ( 19) VAL29 0 0 0 0 0 0 2 4 0 0 0 0 0 0 ( 47) PHE57 0 0 0 0 8 17 0 0 0 0 0 0 0 0 ( 62) LEU72 0 0 0 0 0 3 2 0 0 0 0 0 0 0 ( 64) PHE74 0 0 0 0 0 6 0 0 0 0 0 0 0 0 ( 70) VAL80 0 0 0 0 0 4 2 0 0 0 0 0 0 0 ( 72) THR82 0 0 0 0 0 0 1 0 0 0 0 0 0 0 (107) ASN117 0 0 0 0 0 0 0 6 4 0 0 0 0 0 (109) VAL119 0 0 0 0 0 0 0 0 5 2 0 0 0 0 (138) PHE148 0 0 0 0 0 0 0 0 0 0 22 11 0 0 (139) PRO149 0 0 0 0 0 0 0 0 0 0 0 6 2 0 (153) LEU163 0 0 0 0 0 0 0 0 0 3 3 0 0 0 (155) PHE165 0 0 0 0 0 0 0 0 0 0 5 0 0 0 (161) VAL171 0 0 0 0 0 0 0 0 0 6 3 0 0 0 (163) THR173 0 0 0 0 0 0 0 0 9 2 0 0 0 0 prot.sequence pvdlskhpsgivptlqNiVstvnldckldlkaialqarnaeynpkrFaavimrirepkttaLiFasgkmVcTgaksedfskmaarkyarivqklgfpakfkdfkiqNiVgscdvkfpirleglayshaafssyepelFPgliyrmkvpkivlLiFvsgkiViTgakmrdetykafeniypvlsefrki >1qp0_A:Periplasmic_binding_protein-like_I;lambda_repressor-like_DNA-binding_domains; title=PURINE REPRESSOR-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX organism=Escherichia coli DNA sequence DT(M699) DA(M700) DC(M701) DG(M702) DC(M703) DA(M704) DA(M705) DC(M706) DC(M707) DG(M708) DG(M709) DT(M710) DT(M711) DG(M712) DC(M713) DG(M714) DT(M715) chainA ( 12) SER14 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 13) THR15 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 ( 14) THR16 0 0 0 2 5 2 0 0 0 0 0 0 0 0 0 0 0 ( 24) ARG26 0 0 25 9 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 52) LEU54 0 0 0 0 0 0 0 0 7 5 0 0 0 0 0 0 0 ( 53) LYS55 0 0 0 0 0 0 1 4 3 0 0 0 0 0 0 0 0 prot.sequence tikdvakranvSTTtvshvinktRfvaeetrnavwaaikelhyspsavarsLKvnhtksigllatsseaayfaeiieavekncfqkgytlilgnawnnlekqraylsmmaqkrvdgllvmcseypepllamleeyrhipmvvmdwgeakadftdavidnafeggymagrylierghreigvipgplerntgagrlagfmkameeamikvpeswivqgdfepesgyramqqilsqphrptavfcggdimamgalcaademglrvpqdvsligydnvrnaryftpalttihqpkdslgetafnmlldrivnkreepqsievhprlierrsvadgpfrdyr >1qp4_A:Periplasmic_binding_protein-like_I;lambda_repressor-like_DNA-binding_domains; title=PURINE REPRESSOR-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX organism=Escherichia coli DNA sequence DT(M699) DA(M700) DC(M701) DG(M702) DC(M703) DA(M704) DA(M705) DT(M706) DC(M707) DG(M708) DA(M709) DT(M710) DT(M711) DG(M712) DC(M713) DG(M714) DT(M715) chainA ( 12) SER14 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 14) THR16 0 0 0 3 5 1 0 0 0 0 0 0 0 0 0 0 0 ( 24) ARG26 0 0 24 13 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 52) LEU54 0 0 0 0 0 0 0 0 8 5 0 0 0 0 0 0 0 ( 53) LYS55 0 0 0 0 0 0 1 6 4 0 0 0 0 0 0 0 0 prot.sequence tikdvakranvStTtvshvinktRfvaeetrnavwaaikelhyspsavarsLKvnhtksigllatsseaayfaeiieavekncfqkgytlilgnawnnlekqraylsmmaqkrvdgllvmcseypepllamleeyrhipmvvmdwgeakadftdavidnafeggymagrylierghreigvipgplerntgagrlagfmkameeamikvpeswivqgdfepesgyramqqilsqphrptavfcggdimamgalcaademglrvpqdvsligydnvrnaryftpalttihqpkdslgetafnmlldrivnkreepqsievhprlierrsvadgpfrdyr >1qp7_A:Periplasmic_binding_protein-like_I;lambda_repressor-like_DNA-binding_domains; title=PURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX organism=Escherichia coli DNA sequence DT(M699) DA(M700) DC(M701) DG(M702) DC(M703) DA(M704) DA(M705) DC(M706) DC(M707) DG(M708) DG(M709) DT(M710) DT(M711) DG(M712) DC(M713) DG(M714) DT(M715) chainA ( 12) SER14 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 14) THR16 0 0 0 3 5 2 0 0 0 0 0 0 0 0 0 0 0 ( 24) ARG26 0 0 24 13 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 52) LEU54 0 0 0 0 0 0 0 0 8 4 0 0 0 0 0 0 0 ( 53) ALA55 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 prot.sequence tikdvakranvStTtvshvinktRfvaeetrnavwaaikelhyspsavarsLAvnhtksigllatsseaayfaeiieavekncfqkgytlilgnawnnlekqraylsmmaqkrvdgllvmcseypepllamleeyrhipmvvmdwgeakadftdavidnafeggymagrylierghreigvipgplerntgagrlagfmkameeamikvpeswivqgdfepesgyramqqilsqphrptavfcggdimamgalcaademglrvpqdvsligydnvrnaryftpalttihqpkdslgetafnmlldrivnkreepqsievhprlierrsvadgpfrdyr >1qpz_A:Periplasmic_binding_protein-like_I;lambda_repressor-like_DNA-binding_domains; title=PURINE REPRESSOR-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX organism=Escherichia coli DNA sequence DT(M699) DA(M700) DC(M701) DG(M702) DC(M703) DA(M704) DA(M705) DA(M706) DC(M707) DG(M708) DT(M709) DT(M710) DT(M711) DG(M712) DC(M713) DG(M714) DT(M715) chainA ( 13) SER14 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 15) THR16 0 0 0 5 5 2 0 0 0 0 0 0 0 0 0 0 0 ( 25) ARG26 0 0 26 10 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 53) LEU54 0 0 0 0 0 0 0 0 5 4 0 0 0 0 0 0 0 ( 54) LYS55 0 0 0 0 0 0 0 11 5 0 0 0 0 0 0 0 0 prot.sequence atikdvakranvStTtvshvinktRfvaeetrnavwaaikelhyspsavarsLKvnhtksigllatsseaayfaeiieavekncfqkgytlilgnawnnlekqraylsmmaqkrvdgllvmcseypepllamleeyrhipmvvmdwgeakadftdavidnafeggymagrylierghreigvipgplerntgagrlagfmkameeamikvpeswivqgdfepesgyramqqilsqphrptavfcggdimamgalcaademglrvpqdvsligydnvrnaryftpalttihqpkdslgetafnmlldrivnkreepqsievhprlierrsvadgpfrdyr >1qqa_A:Periplasmic_binding_protein-like_I;lambda_repressor-like_DNA-binding_domains; title=PURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX organism=Escherichia coli DNA sequence DT(M699) DA(M700) DC(M701) DG(M702) DC(M703) DA(M704) DA(M705) DG(M706) DC(M707) DG(M708) DC(M709) DT(M710) DT(M711) DG(M712) DC(M713) DG(M714) DT(M715) chainA ( 12) SER14 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 14) THR16 0 0 0 4 8 2 0 0 0 0 0 0 0 0 0 0 0 ( 24) ARG26 0 0 24 13 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 52) LEU54 0 0 0 0 0 0 0 0 8 5 0 0 0 0 0 0 0 ( 53) ALA55 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 prot.sequence tikdvakranvStTtvshvinktRfvaeetrnavwaaikelhyspsavarsLAvnhtksigllatsseaayfaeiieavekncfqkgytlilgnawnnlekqraylsmmaqkrvdgllvmcseypepllamleeyrhipmvvmdwgeakadftdavidnafeggymagrylierghreigvipgplerntgagrlagfmkameeamikvpeswivqgdfepesgyramqqilsqphrptavfcggdimamgalcaademglrvpqdvsligydnvrnaryftpalttihqpkdslgetafnmlldrivnkreepqsievhprlierrsvadgpfrdyr >1qqb_A:Periplasmic_binding_protein-like_I;lambda_repressor-like_DNA-binding_domains; title=PURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX organism=Escherichia coli DNA sequence DT(M699) DA(M700) DC(M701) DG(M702) DC(M703) DA(M704) DA(M705) DT(M706) DC(M707) DG(M708) DA(M709) DT(M710) DT(M711) DG(M712) DC(M713) DG(M714) DT(M715) chainA ( 12) SER14 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 14) THR16 0 0 0 5 5 1 0 0 0 0 0 0 0 0 0 0 0 ( 24) ARG26 0 0 24 13 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 52) LEU54 0 0 0 0 0 0 0 0 6 5 0 0 0 0 0 0 0 ( 53) ALA55 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 prot.sequence tikdvakranvStTtvshvinktRfvaeetrnavwaaikelhyspsavarsLAvnhtksigllatsseaayfaeiieavekncfqkgytlilgnawnnlekqraylsmmaqkrvdgllvmcseypepllamleeyrhipmvvmdwgeakadftdavidnafeggymagrylierghreigvipgplerntgagrlagfmkameeamikvpeswivqgdfepesgyramqqilsqphrptavfcggdimamgalcaademglrvpqdvsligydnvrnaryftpalttihqpkdslgetafnmlldrivnkreepqsievhprlierrsvadgpfrdyr >1qrh_A:Restriction_endonuclease-like; title=X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE COMPLEXES WITH AN R145K MUTATION AT 2.7 A organism=ESCHERICHIA COLI DNA sequence DT(M1) DC(M2) DG(M3) DC(M4) DG(M5) DA(M6) DA(M7) DT(M8) DT(M9) DC(M10) DG(M11) DC(M12) DG(M13) chainA ( 99) GLN115 0 0 0 0 0 0 0 4 0 0 0 0 0 (121) MET137 0 0 0 0 0 0 0 0 1 2 0 0 0 (122) ALA138 0 0 0 0 0 0 0 0 0 2 1 0 0 (125) ASN141 0 0 0 0 0 0 0 2 0 0 0 0 0 (126) ALA142 0 0 0 0 0 0 5 4 0 0 0 0 0 (129) LYS145 0 0 0 0 0 2 6 0 0 0 0 0 0 prot.sequence sqgvigifgdyakahdlavgevsklvkkalsneypqlsfryrdsikkteinealkkidpdlggtlfvsnssikpdggivevkddygewrvvlvaeakhQgkdiinirngllvgkrgdqdlMAagNAieKshkniseianfmlseshfpyvlflegsnfltenisitrpdgrvvnleynsgilnrldrltaanygmpinsnlcinkfvnhkdksimlqaasiytqgdgrewdskimfeimfdisttslrvlgrdlfeqltsk >1qri_A:Restriction_endonuclease-like; title=X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE COMPLEXES WITH AN E144D MUTATION AT 2.7 A organism=ESCHERICHIA COLI DNA sequence DT(M1) DC(M2) DG(M3) DC(M4) DG(M5) DA(M6) DA(M7) DT(M8) DT(M9) DC(M10) DG(M11) DC(M12) DG(M13) chainA ( 99) GLN115 0 0 0 0 0 0 0 4 0 0 0 0 0 (121) MET137 0 0 0 0 0 0 0 0 2 2 0 0 0 (122) ALA138 0 0 0 0 0 0 0 0 0 3 1 0 0 (125) ASN141 0 0 0 0 0 0 0 1 0 0 0 0 0 (126) ALA142 0 0 0 0 0 0 5 5 0 0 0 0 0 (129) ARG145 0 0 0 0 0 5 12 0 0 0 0 0 0 prot.sequence sqgvigifgdyakahdlavgevsklvkkalsneypqlsfryrdsikkteinealkkidpdlggtlfvsnssiKpdggivevkddygewrvvlvaeakhQgkdiinirngllvgkrgdqdlMAagNAidRshkniseianfmlseshfpyvlflegsnfltenisitrpdgrvvnleynsgilnrldrltaanygmpinsnlcinkfvnhkdksimlqaasiytqgdgrewdskimfeimfdisttslrvlgrdlfeqltsk >1qrv_AB: title=CRYSTAL STRUCTURE OF THE COMPLEX OF HMG-D AND DNA organism=Drosophila melanogaster DNA sequence DC(D12):DG(C9) DG(D13):DC(C8) DA(D14):DT(C7) DT(D15):DA(C6) DA(D16):DT(C5) DT(D17):DA(C4) DC(D18):DG(C3) DG(D19):DC(C2) DC(D20):DG(C1) chainA ( 6) ARG7 3 5 0 0 0 0 0 0 0 ( 11) TYR12 0 0 0 6 6 0 0 0 0 ( 12) MET13 0 0 0 12 13 0 0 0 0 ( 15) LEU16 0 0 0 0 3 0 0 0 0 ( 19) ARG20 0 0 0 0 3 2 0 0 0 ( 31) VAL32 0 0 0 0 0 3 4 0 0 ( 32) THR33 0 0 0 0 0 5 5 0 0 ( 35) ALA36 0 0 0 0 4 4 0 0 0 chainB ( 7) LEU9 0 0 0 0 0 0 0 0 12 ( 11) MET13 0 0 0 0 0 0 0 0 8 ( 15) ASN17 0 0 0 0 0 0 0 0 10 ( 18) ARG20 0 0 0 0 0 0 0 0 1 prot.sequence sdkpkRplSaYMlwLnsaResikrenpgikVTevAkrggelwramkdkseweakaakakddydravkefeang/dkpkrpLsayMlwlNsaResikrenpgikvtevakrggelwramkdkseweakaakakddydravkefean >1qss_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=DDGTP-TRAPPED CLOSED TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS organism=Thermus aquaticus DNA sequence DG(B101):DC(C216) DA(B102):DT(C215) DC(B103):DG(C214) DC(B104):DG(C213) DA(B105):DT(C212) DC(B106):DG(C211) DG(B107):DC(C210) DG(B108):DC(C209) DC(B109):DG(C208) DG(B110):DC(C207) DC(B111):DG(C206) DDG(B112):DC(C205) DG3(A113):DC(C204) chainA (248) LYS540 0 0 0 0 0 0 0 5 4 0 0 0 0 (253) TYR545 0 0 0 0 0 0 0 0 0 1 0 0 0 (281) ARG573 0 0 0 0 0 0 0 0 0 0 4 11 0 (288) ASN580 0 0 0 0 0 0 0 0 0 1 0 0 0 (291) ASN583 0 0 0 0 0 0 0 0 0 10 1 0 0 (295) ARG587 0 0 0 0 0 0 0 0 0 0 7 4 0 (318) ASP610 0 0 0 0 0 0 0 0 0 0 0 0 7 (320) SER612 0 0 0 0 0 0 0 0 0 0 0 0 1 (321) GLN613 0 0 0 0 0 0 0 0 0 0 0 0 1 (322) ILE614 0 0 0 0 0 0 0 0 0 0 0 0 3 (323) GLU615 0 0 0 0 0 0 0 0 0 0 0 0 2 (347) HIS639 0 0 0 0 0 0 0 0 0 0 0 0 7 (367) ARG659 0 0 0 0 0 0 0 0 0 0 0 0 5 (368) ARG660 0 0 0 0 0 0 0 0 0 0 0 2 8 (371) LYS663 0 0 0 0 0 0 0 0 0 0 0 0 11 (372) THR664 0 0 0 0 0 0 0 0 0 0 0 0 3 (375) PHE667 0 0 0 0 0 0 0 0 0 0 0 0 30 (379) TYR671 0 0 0 0 0 0 0 0 0 0 0 0 10 (381) MET673 0 0 0 0 0 0 0 0 0 0 0 0 1 (385) ARG677 0 0 0 0 0 0 0 0 0 0 0 0 6 (458) ASN750 0 0 0 0 0 0 0 0 0 0 0 1 1 (462) GLN754 0 0 0 0 0 0 0 0 0 0 0 4 0 (492) HIS784 0 0 0 0 0 0 0 0 0 0 1 0 0 (493) ASP785 0 0 0 0 0 0 0 0 0 0 0 0 8 prot.sequence aleeapwpppegafvgfvlsrkepmwadllalaaarggrvhrapepykalrdlkeergllakdlsvlalreglglppgddpmllaylldpsnttpegvarryggewteeageraalserlfanlwgrlegeerllwlyreverplsavlahmeatgvrldvaylralslevaeeiarleaevfrlaghpfnlnsrdqlervlfdelglpaigktektgkrstsaavlealreahpivekilqyreltKlkstYidplpdlihprtgrlhtrfnqtatatgRlsssdpNlqNipvRtplgqrirrafiaeegwllvaldysqiElrvlahlsgdenlirvfqegrdihtetaswmfgvpreavdplmrraakTinfgvlYgMsahRlsqelaipyeeaqafieryfqsfpkvrawiektleegrrrgyvetlfgrrryvpdlearvksvreaaermafNmpvQgtaadlmklamvklfprleemgarmllqvHdelvleapkeraeavarlakevmegvyplavplevevgigedwlsak >1qsy_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=DDATP-TRAPPED CLOSED TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS organism=Thermus aquaticus DNA sequence DG(C206):DC(B111) DC(C207):DG(B110) DG(C208):DC(B109) DC(C209):DG(B108) DC(C210):DG(B107) DG(C211):DC(B106) DT(C212):DA(B105) DG(C213):DC(B104) DG(C214):DC(B103) DT(C215):DA(B102) DC(C216):DG(B101) chainA (248) LYS540 0 1 4 4 0 0 0 0 0 0 0 (253) TYR545 0 1 0 0 0 0 0 0 0 0 0 (281) ARG573 5 0 0 0 0 0 0 0 0 0 0 (288) ASN580 0 1 0 0 0 0 0 0 0 0 0 (291) ASN583 1 10 0 0 0 0 0 0 0 0 0 (462) GLN754 1 0 0 0 0 0 0 0 0 0 0 (492) HIS784 1 0 0 0 0 0 0 0 0 0 0 prot.sequence aleeapwpppegafvgfvlsrkepmwadllalaaarggrvhrapepykalrdlkeergllakdlsvlalreglglppgddpmllaylldpsnttpegvarryggewteeageraalserlfanlwgrlegeerllwlyreverplsavlahmeatgvrldvaylralslevaeeiarleaevfrlaghpfnlnsrdqlervlfdelglpaigktektgkrstsaavlealreahpivekilqyreltKlkstYidplpdlihprtgrlhtrfnqtatatgRlsssdpNlqNipvrtplgqrirrafiaeegwllvaldysqielrvlahlsgdenlirvfqegrdihtetaswmfgvpreavdplmrraaktinfgvlygmsahrlsqelaipyeeaqafieryfqsfpkvrawiektleegrrrgyvetlfgrrryvpdlearvksvreaaermafnmpvQgtaadlmklamvklfprleemgarmllqvHdelvleapkeraeavarlakevmegvyplavplevevgigedwlsak >1qtm_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=DDTTP-TRAPPED CLOSED TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS organism=Thermus aquaticus DNA sequence DA(C204):TTP(A113) DA(C205):2DT(B112) DG(C206):DC(B111) DC(C207):DG(B110) DG(C208):DC(B109) DC(C209):DG(B108) DC(C210):DG(B107) DG(C211):DC(B106) DT(C212):DA(B105) DG(C213):DC(B104) DG(C214):DC(B103) DT(C215):DA(B102) DC(C216):DG(B101) chainA (248) LYS540 0 0 0 0 4 4 0 0 0 0 0 0 0 (253) TYR545 0 0 0 1 0 0 0 0 0 0 0 0 0 (281) ARG573 0 4 5 0 0 0 0 0 0 0 0 0 0 (288) ASN580 0 0 0 1 0 0 0 0 0 0 0 0 0 (291) ASN583 0 0 1 10 0 0 0 0 0 0 0 0 0 (318) ASP610 8 0 0 0 0 0 0 0 0 0 0 0 0 (320) SER612 2 0 0 0 0 0 0 0 0 0 0 0 0 (322) ILE614 3 0 0 0 0 0 0 0 0 0 0 0 0 (323) GLU615 1 0 0 0 0 0 0 0 0 0 0 0 0 (347) HIS639 5 0 0 0 0 0 0 0 0 0 0 0 0 (367) ARG659 5 0 0 0 0 0 0 0 0 0 0 0 0 (368) ARG660 0 3 0 0 0 0 0 0 0 0 0 0 0 (371) LYS663 14 0 0 0 0 0 0 0 0 0 0 0 0 (372) THR664 2 0 0 0 0 0 0 0 0 0 0 0 0 (375) PHE667 23 0 0 0 0 0 0 0 0 0 0 0 0 (379) TYR671 6 0 0 0 0 0 0 0 0 0 0 0 0 (381) MET673 2 0 0 0 0 0 0 0 0 0 0 0 0 (385) ARG677 6 0 0 0 0 0 0 0 0 0 0 0 0 (462) GLN754 0 2 1 0 0 0 0 0 0 0 0 0 0 (492) HIS784 0 0 1 0 0 0 0 0 0 0 0 0 0 (493) ASP785 7 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence aleeapwpppegafvgfvlsrkepmwadllalaaarggrvhrapepykalrdlkeargllakdlsvlalreglglppgddpmllaylldpsnttpegvarryggewteeageraalserlfanlwgrlegeerllwlyreverplsavlahmeatgvrldvaylralslevaeeiarleaevfrlaghpfnlnsrdqlervlfdelglpaigktektgkrstsaavlealreahpivekilqyreltKlksTYidplpdlihprtgrlhtrfnqtatatgRlsssdpNlqNipvrtplgqrirrafiaeegwllvaldysqiElrvlahlsgdenlirvfqegrdihtetaswmfgvpreavdplmrraakTinFgvlYgMsahRlsqelaipyeeaqafieryfqsfpkvrawiektleegrrrgyvetlfgrrryvpdlearvksvreaaermafNmpvQgtaadlmklamvklfprleemgarmllqvHdelvleapkeraeavarlakevmegvyplavplevevgigedwlsak >1qx0_A:Origin_of_replication-binding_domain,_RBD-like; title=CONJUGATIVE RELAXASE TRWC IN COMPLEX WITH ORIT DNA. METAL-BOUND STRUCTURE organism=Escherichia coli DNA sequence DG(B3):DC(B16) DC(B4):DG(B15) DA(B5):DT(B14) DC(B6):DG(B13) DC(B7):DG(B12) DG(B8):DA(B10) chainA ( 69) ALA73 0 0 0 5 2 1 ( 71) ARG75 0 4 9 6 0 0 ( 77) ARG81 1 0 0 0 0 0 (124) ARG128 9 13 11 0 0 0 (126) LYS130 0 0 0 8 0 0 prot.sequence mlshmvltrqdigraasyyedgaddyydasewqgkgaeelglsgevdskrfrellagnigeghrimrsAtRqdskeRigldltfsapksvslqalvagdaeiikahdravartleqaearaqaRqKiqgktriettgnlvigkfrhetsrerdpqlhthavilnmtkrsdgqwralkndeivkatrylgavynaelahelqklgyqlrygkdgnfdlahidrqqiegfskrteqiaewyaargldpnsvsleqkqaakvlsrakktsvdrealraewqatakelgidfs >1r0a_AB:DNA/RNA_polymerases;Ribonuclease_H-like; title=CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE COVALENTLY TETHERED TO DNA TEMPLATE-PRIMER SOLVED TO 2.8 ANGSTROMS organism=HUMAN IMMUNODEFICIENCY VIRUS 1 DNA sequence DC(P803):DG(T725) DG(P804):DC(T724) DT(P805):DA(T723) DC(P806):DG(T722) DC(P807):DG(T721) DC(P808):DG(T720) DT(P809):DA(T719) DG(P810):DC(T718) DT(P811):DA(T717) DT(P812):DA(T716) DC(P813):DG(T715) DG(P814):DC(T714) DA(P815):DT(T713) DG(P816):DC(T712) DC(P817):DG(T711) DG(P818):DC(T710) DC(P819):DG(T709) DC(P820):DG(T708) DG(P821):DC(T707) 2DA(P822):DT(T706) chainA ( 94) ILE94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 (115) TYR115 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 (157) PRO157 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 (183) TYR183 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 9 0 (184) MET184 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 (356) ARG356 0 0 0 0 0 0 0 0 0 1 3 0 1 0 0 0 0 0 0 0 (358) ARG358 0 0 0 0 0 0 0 0 0 10 2 0 0 0 0 0 0 0 0 0 (448) ARG448 0 1 5 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB prot.sequence pispietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaikkkdstkwrklvdfrelnkrtqdfwevqlgIphpaglkkkksvtvldvgdaYfsvpldedfrkytaftipsinnetpgiryqynvlpqgwkgsPaifqssmtkilepfkkqnpdiviyqYMddlyvgsdleigqhrtkieelrqhllrwglttpdkkhqkeppflwmgyelhpdkwtvqpivlpekdswtvndicklvgklnwasqiypgikvrqlskllrgtkalteviplteeaelelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyaRmRgahtndvkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwipewefvntpplvklwyqlekepivgaetfyvdgaanRetklgkagyvtnkgrqkvvpltnttnqktelqaiylalqdsglevnivtdsqyalgiiqaqpdkseselvnqiieqlikkekvylawvpahkgiggneqvdklvsagirk/pispietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaikkkdstkwrklvdfrelnkrtqdfwevqlgIphpaglkkkksvtvldvgdaYfsvpldedfrkytaftipsinnetpgiryqynvlpqgwkgsPaifqssmtkilepfkkqnpdiviyqYMddlyvgsdleigqhrtkieelrqhllrwglttpdkkhqkeppflwmgyelhpdkwtvqpivlpekdswtvndiqklvgklnwasqiypgikvrqlskllrgtkalteviplteeaelelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyaRmRgahtndvkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwipewefvntpplvklwyql >1r0n_A:Glucocorticoid_receptor-like_DNA-binding_domain; title=CRYSTAL STRUCTURE OF HETERODIMERIC ECDSYONE RECEPTOR DNA BINDING COMPLEX organism=HOMO SAPIENS DNA sequence DC(C2):DG(D36) DG(C3):DC(D35) DA(C4):DT(D34) DG(C5):DC(D33) DG(C6):DC(D32) DT(C7):DA(D31) DC(C8):DG(D30) DA(C9):DT(D29) DA(C10):DT(D28) DT(C11):DA(D27) DG(C12):DC(D26) DA(C13):DT(D25) DC(C14):DG(D24) DC(C15):DG(D23) DT(C16):DA(D22) DC(C17):DG(D21) DG(C18):DC(D20) chainA ( 21) GLU119 0 0 0 0 7 5 0 0 0 0 0 0 0 0 0 0 0 ( 24) LYS122 0 0 1 7 1 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) LYS126 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) ARG127 0 0 0 0 0 0 9 12 0 0 0 0 0 0 0 0 0 prot.sequence hicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqaaaa >1r0n_AB:Glucocorticoid_receptor-like_DNA-binding_domain; title=CRYSTAL STRUCTURE OF HETERODIMERIC ECDSYONE RECEPTOR DNA BINDING COMPLEX organism=DROSOPHILA MELANOGASTER / HOMO SAPIENS DNA sequence DC(D20):DG(C18) DG(D21):DC(C17) DA(D22):DT(C16) DG(D23):DC(C15) DG(D24):DC(C14) DT(D25):DA(C13) DC(D26):DG(C12) DA(D27):DT(C11) DT(D28):DA(C10) DT(D29):DA(C9) DG(D30):DC(C8) DA(D31):DT(C7) DC(D32):DG(C6) DC(D33):DG(C5) DT(D34):DA(C4) DC(D35):DG(C3) DG(D36):DC(C2) chainA ( 21) GLU119 0 0 0 0 0 0 0 0 0 0 0 5 7 0 0 0 0 ( 24) LYS122 0 0 0 0 0 0 0 0 0 0 0 0 1 7 1 0 0 ( 28) LYS126 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 ( 29) ARG127 0 0 0 0 0 0 0 0 0 12 9 0 0 0 0 0 0 chainB ( 15) TYR213 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 21) GLU219 0 0 0 0 5 2 0 0 0 0 0 0 0 0 0 0 0 ( 24) LYS222 0 0 1 8 3 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) ARG226 0 0 0 2 9 1 0 0 0 0 0 0 0 0 0 0 0 ( 29) ARG227 0 0 0 0 0 0 7 13 0 0 0 0 0 0 0 0 0 ( 53) ARG251 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 prot.sequence hicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqaaaa/elclvcgdrasgyhYnaltcEgcKgffRRsvtksavycckfgracemdmymrRkcqecrlkkclavgmrpecvvpenqcamkrrek >1r0o_AB:Glucocorticoid_receptor-like_DNA-binding_domain; title=CRYSTAL STRUCTURE OF THE HETERODIMERIC ECDYSONE RECEPTOR DNA-BINDING COMPLEX organism=DROSOPHILA MELANOGASTER DNA sequence DC(D19):DG(C19) DG(D20):DC(C18) DA(D21):DT(C17) DG(D22):DC(C16) DG(D23):DC(C15) DT(D24):DA(C14) DC(D25):DG(C13) DA(D26):DT(C12) DT(D27):DA(C10) DT(D30):DA(C9) DG(D31):DC(C8) DA(D32):DT(C7) DC(D33):DG(C6) DC(D34):DG(C5) DT(D35):DA(C4) DC(D36):DG(C3) DG(D37):DC(C2) chainA ( 21) GLU25 0 0 0 0 0 0 0 0 0 0 0 8 9 0 0 0 0 ( 24) LYS28 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 ( 28) LYS32 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 ( 29) ARG33 0 0 0 0 0 0 0 0 0 12 7 0 0 0 0 0 0 chainB ( 16) TYR19 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 22) GLU25 0 0 0 0 8 5 0 0 0 0 0 0 0 0 0 0 0 ( 25) LYS28 0 0 1 8 3 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) ARG32 0 0 0 3 9 2 0 0 0 0 0 0 0 0 0 0 0 ( 30) ARG33 0 0 0 0 0 0 7 12 0 0 0 0 0 0 0 0 0 prot.sequence hlcsicgdrasgkhygvyscEgcKgffKRtvrkdltyacrenrnciidkrqrnrcqycryqkcltcgmkreavqee/eelclvcgdrasgyhYnaltcEgcKgffRRsvtksavycckfgracemdmymrrkcqecrlkkclavgmrpecvvpen >1r0o_B:Glucocorticoid_receptor-like_DNA-binding_domain; title=CRYSTAL STRUCTURE OF THE HETERODIMERIC ECDYSONE RECEPTOR DNA-BINDING COMPLEX organism=DROSOPHILA MELANOGASTER DNA sequence DC(D19):DG(C19) DG(D20):DC(C18) DA(D21):DT(C17) DG(D22):DC(C16) DG(D23):DC(C15) DT(D24):DA(C14) DC(D25):DG(C13) DA(D26):DT(C12) DT(D27):DA(C10) DT(D30):DA(C9) DG(D31):DC(C8) DA(D32):DT(C7) DC(D33):DG(C6) DC(D34):DG(C5) DT(D35):DA(C4) DC(D36):DG(C3) DG(D37):DC(C2) chainB ( 16) TYR19 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 22) GLU25 0 0 0 0 8 5 0 0 0 0 0 0 0 0 0 0 0 ( 25) LYS28 0 0 1 8 3 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) ARG32 0 0 0 3 9 2 0 0 0 0 0 0 0 0 0 0 0 ( 30) ARG33 0 0 0 0 0 0 7 12 0 0 0 0 0 0 0 0 0 prot.sequence eelclvcgdrasgyhYnaltcEgcKgffRRsvtksavycckfgracemdmymrrkcqecrlkkclavgmrpecvvpen >1r2y_A:N-terminal_domain_of_MutM-like_DNA_repair_proteins;S13-like_H2TH_domain;Glucocorticoid_receptor-like_DNA-binding_domain; title=MUTM (FPG) BOUND TO 8-OXOGUANINE (OXOG) CONTAINING DNA organism=GEOBACILLUS STEAROTHERMOPHILUS DNA sequence DG(B1):DC(C24) DT(B2):DA(C23) DA(B3):DT(C22) DG(B4):DC(C21) DA(B5):DT(C20) DC(B6):DG(C19) DC(B7):8OG(C18) DT(B8):DA(C17) DG(B9):DC(C16) DG(B10):DC(C15) DA(B11):DT(C14) DC(B12):DG(C13) chainA ( 2) GLN3 0 0 0 0 0 0 5 0 0 0 0 0 ( 5) GLU6 0 0 0 0 0 0 10 0 0 0 0 0 ( 75) ARG76 0 0 0 0 3 28 0 0 0 0 0 0 ( 76) MET77 0 0 0 0 0 16 2 0 0 0 0 0 ( 77) GLU78 0 0 0 0 0 0 4 0 0 0 0 0 ( 79) ARG80 0 0 0 0 0 0 5 0 0 0 0 0 (110) VAL111 0 0 0 0 0 0 0 1 0 0 0 0 (111) ARG112 0 0 0 0 0 4 14 36 0 0 0 0 (113) PHE114 0 0 0 0 0 64 12 0 0 0 0 0 (174) ILE175 0 0 0 0 0 0 4 0 0 0 0 0 (220) THR221 0 0 0 0 0 0 2 0 0 0 0 0 (221) VAL222 0 0 0 0 0 0 6 0 0 0 0 0 (222) ARG223 0 0 0 0 0 0 12 5 2 0 0 0 (223) THR224 0 0 0 0 0 0 4 0 0 0 0 0 (224) TYR225 0 0 0 0 0 0 9 0 0 0 0 0 (263) ARG264 0 0 0 0 4 6 0 0 0 0 0 0 prot.sequence pqlpevetirrtllplivgktiedvrifwpniirhprdseafaarmigqtvrglerrgkflkflldrdalishlRMegryavasaleplephthvvfcftdgselryrdVRkFgtmhvyakeeadrrpplaelgpeplspafspavlaeravktkrsvkallldqtvvagfgniyvdeslfragilpgrpaaslsskeierlheemvatigeavmkggstvRtyvntqgeagtfqhhlyvygrqgnpckrcgtpiektvvagRgthycprcqr >1r2z_A:N-terminal_domain_of_MutM-like_DNA_repair_proteins;S13-like_H2TH_domain;Glucocorticoid_receptor-like_DNA-binding_domain; title=MUTM (FPG) BOUND TO 5,6-DIHYDROURACIL (DHU) CONTAINING DNA organism=GEOBACILLUS STEAROTHERMOPHILUS DNA sequence DG(B1):DC(C24) DT(B2):DA(C23) DA(B3):DT(C22) DG(B4):DC(C21) DA(B5):DT(C20) DC(B6):DG(C19) DC(B7):UMP(C18) DT(B8):DA(C17) DG(B9):DC(C16) DG(B10):DC(C15) DA(B11):DT(C14) DC(B12):DG(C13) chainA ( 2) GLN3 0 0 0 0 0 0 4 0 0 0 0 0 ( 5) GLU6 0 0 0 0 0 0 8 0 0 0 0 0 ( 75) ARG76 0 0 0 0 0 24 0 0 0 0 0 0 ( 76) MET77 0 0 0 0 0 16 0 0 0 0 0 0 ( 77) GLU78 0 0 0 0 0 0 0 1 0 0 0 0 (111) ARG112 0 0 0 0 0 2 15 36 0 0 0 0 (113) PHE114 0 0 0 0 0 72 11 0 0 0 0 0 (174) ILE175 0 0 0 0 0 0 4 0 0 0 0 0 (221) VAL222 0 0 0 0 0 0 6 0 0 0 0 0 (222) ARG223 0 0 0 0 0 0 4 0 0 0 0 0 (224) TYR225 0 0 0 0 0 0 5 0 0 0 0 0 (263) ARG264 0 0 0 0 1 6 0 0 0 0 0 0 prot.sequence pqlpevetirrtllplivgktiedvrifwpniirhprdseafaarmigqtvrglerrgkflkflldrdalishlRMEgryavasaleplephthvvfcftdgselryrdvRkFgtmhvyakeeadrrpplaelgpeplspafspavlaeravktkrsvkallldqtvvagfgniyvdeslfragilpgrpaaslsskeierlheemvatigeavmkggstvrtyvntqgeagtfqhhlyvygrqgnpckrcgtpiektvvagRgthycprcqr >1r49_A:Eukaryotic_DNA_topoisomerase_I,_N-terminal_DNA-binding_fragment;DNA_breaking-rejoining_enzymes;Eukaryotic_DNA_topoisomerase_I,_dispensable_insert_domain; title=HUMAN TOPOISOMERASE I (TOPO70) DOUBLE MUTANT K532R/Y723F organism=Homo sapiens DNA sequence DA(C101):DT(B22) DA(C102):DT(B21) DA(C103):DT(B20) DA(C104):DT(B19) DA(C105):DT(B18) DT(C106):DA(B17) DT(C107):DA(B16) DT(C108):DA(B15) DT(C109):DA(B14) DT(C110):DA(B13) DC(C111):DG(B12) DT(C112):DA(B11) DA(C113):DT(B10) DA(C114):DT(B9) DG(C115):DC(B8) DT(C116):DA(B7) DC(C117):DG(B6) DT(C118):DA(B5) DT(C119):DA(B4) DT(C120):DA(B3) DT(C121):DA(B2) chainA (163) ARG364 0 0 0 0 0 0 0 0 0 0 12 2 2 0 0 0 0 0 0 0 0 (224) TYR426 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 9 0 0 0 0 0 (226) MET428 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 (289) ASN491 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 6 0 0 0 0 (291) LYS493 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 (330) ARG532 0 0 0 0 0 0 0 0 0 0 0 0 9 10 1 0 0 0 0 0 0 (505) ASN722 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 prot.sequence kwkwweeerypegikwkflehkgpvfappyeplpenvkfyydgkvmklspkaeevatffakmldheyttkeifrknffkdwrkemtneekniitnlskcdftqmsqyfkaqtearkqmskeeklkikeenekllkeygfcimdnhkerianfkieppglfrgRgnhpkmgmlkrrimpediiincsdakvpspppghkwkevrhdnkvtwlvswteniqgsikYiMlnpssrikgekdwqkyetarrlkkcvdkirnqyredwkskemkvrqravalyfidklalragNeKeegetadtvgccslrvehinlhpeldgqeyvvefdflgRdsiryynkvpvekrvfknlqlfmenkqpeddlfdrlntgilnkhlqdlmegltakvfrtynasitlqqqlkeltapdenipakilsynranravailcnhqmmnlqtkidakkeqladarrdlksakadakvmkdaktkkvveskkkavqrleeqlmklevqatdreenkqsklNfldpritvawckkwgvpiekiynktqrekfawaidmadedyef >1r4i_AB: title=CRYSTAL STRUCTURE OF ANDROGEN RECEPTOR DNA-BINDING DOMAIN BOUND TO A DIRECT REPEAT RESPONSE ELEMENT organism=Rattus norvegicus DNA sequence DC(D19):DG(C18) DT(D20):DA(C17) DG(D21):DC(C16) DT(D22):DA(C15) DT(D23):DA(C14) DC(D24):DG(C13) DT(D25):DA(C12) DT(D26):DA(C11) DG(D27):DC(C10) DA(D28):DT(C9) DT(D29):DA(C8) DG(D30):DC(C7) DT(D31):DA(C6) DT(D32):DA(C5) DC(D33):DG(C4) DT(D34):DA(C3) DG(D35):DC(C2) DG(D36):DC(C1) chainA ( 26) LYS563 0 0 0 0 0 0 0 0 0 0 0 0 0 1 6 2 0 0 ( 27) VAL564 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 ( 31) ARG568 0 0 0 0 0 0 0 0 0 0 17 7 0 0 0 0 0 0 chainB ( 14) HIS553 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 24) LYS563 0 5 6 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) VAL564 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) LYS567 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) ARG568 0 0 0 0 2 10 6 0 0 0 0 0 0 0 0 0 0 0 prot.sequence pqktclicgdeasgahygaltcgscKVffkRaaegkqkylcasrndctidkfrrkncpscrlrkcyeagmtlga/ktclicgdeasgaHygaltcgscKVffKRaaegkqkylcasrndctidkfrrkncpscrlrkcyeagmtlg >1r4o_AB:Glucocorticoid_receptor-like_DNA-binding_domain; title=CRYSTALLOGRAPHIC ANALYSIS OF THE INTERACTION OF THE GLUCOCORTICOID RECEPTOR WITH DNA organism=Rattus norvegicus DNA sequence DC(D2):DG(C19) DA(D3):DT(C18) DG(D4):DC(C17) DA(D5):DT(C16) DA(D6):DT(C15) DC(D7):DG(C14) DA(D8):DT(C13) DT(D9):DA(C12) DC(D10):DG(C11) DG(D11):DC(C10) DA(D12):DT(C9) DT(D13):DA(C8) DG(D14):DC(C7) DT(D15):DA(C6) DT(D16):DA(C5) DC(D17):DG(C4) DT(D18):DA(C3) DG(D19):DC(C2) chainA ( 28) LYS461 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 3 0 ( 29) VAL462 0 0 0 0 0 0 0 0 0 0 0 0 1 4 0 0 0 0 ( 33) ARG466 0 0 0 0 0 0 0 0 0 0 0 15 14 1 0 0 0 0 ( 78) LYS511 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 chainB ( 28) LYS461 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) VAL462 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 ( 33) ARG466 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 prot.sequence mkparpclvcsdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacryrkclqagmnlearKtk/mkparpclvcsdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacryrkclqagmnlearktk >1r4o_B:Glucocorticoid_receptor-like_DNA-binding_domain; title=CRYSTALLOGRAPHIC ANALYSIS OF THE INTERACTION OF THE GLUCOCORTICOID RECEPTOR WITH DNA organism=Rattus norvegicus DNA sequence DC(C2):DG(D19) DA(C3):DT(D18) DG(C4):DC(D17) DA(C5):DT(D16) DA(C6):DT(D15) DC(C7):DG(D14) DA(C8):DT(D13) DT(C9):DA(D12) DC(C10):DG(D11) DG(C11):DC(D10) DA(C12):DT(D9) DT(C13):DA(D8) DG(C14):DC(D7) DT(C15):DA(D6) DT(C16):DA(D5) DC(C17):DG(D4) DT(C18):DA(D3) DG(C19):DC(D2) chainB ( 28) LYS461 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 ( 29) VAL462 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 ( 33) ARG466 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 prot.sequence mkparpclvcsdeasgchygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacryrkclqagmnlearktk >1r4r_AB:Glucocorticoid_receptor-like_DNA-binding_domain; title=CRYSTALLOGRAPHIC ANALYSIS OF THE INTERACTION OF THE GLUCOCORTICOID RECEPTOR WITH DNA organism=Rattus norvegicus DNA sequence DC(C2):DG(D19) DA(C3):DT(D18) DG(C4):DC(D17) DA(C5):DT(D16) DA(C6):DT(D15) DC(C7):DG(D14) DA(C8):DT(D13) DT(C9):DA(D12) DG(C10):DC(D11) DA(C11):DT(D10) DT(C12):DA(D9) DG(C13):DC(D8) DT(C14):DA(D7) DT(C15):DA(D6) DC(C16):DG(D5) DT(C17):DA(D4) DC(C18):DG(D3) DA(C19):DT(D2) chainA ( 24) LYS461 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) VAL462 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) LYS465 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) ARG466 0 0 0 0 3 8 18 0 0 0 0 0 0 0 0 0 0 0 chainB ( 18) HIS451 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 ( 28) LYS461 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 1 0 0 ( 29) VAL462 0 0 0 0 0 0 0 0 0 0 0 2 4 0 0 0 0 0 ( 33) ARG466 0 0 0 0 0 0 0 0 0 0 7 8 0 0 0 0 0 0 prot.sequence rpclvcsdeasgchygvltcgscKVffKRavegqhnylcagrndciidkirrkncpacryrkclqagmnlear/mkparpclvcsdeasgcHygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacryrkclqagmnlear >1r4r_B:Glucocorticoid_receptor-like_DNA-binding_domain; title=CRYSTALLOGRAPHIC ANALYSIS OF THE INTERACTION OF THE GLUCOCORTICOID RECEPTOR WITH DNA organism=Rattus norvegicus DNA sequence DC(C2):DG(D19) DA(C3):DT(D18) DG(C4):DC(D17) DA(C5):DT(D16) DA(C6):DT(D15) DC(C7):DG(D14) DA(C8):DT(D13) DT(C9):DA(D12) DG(C10):DC(D11) DA(C11):DT(D10) DT(C12):DA(D9) DG(C13):DC(D8) DT(C14):DA(D7) DT(C15):DA(D6) DC(C16):DG(D5) DT(C17):DA(D4) DC(C18):DG(D3) DA(C19):DT(D2) chainB ( 18) HIS451 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 ( 28) LYS461 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 1 0 0 ( 29) VAL462 0 0 0 0 0 0 0 0 0 0 0 2 4 0 0 0 0 0 ( 33) ARG466 0 0 0 0 0 0 0 0 0 0 7 8 0 0 0 0 0 0 prot.sequence mkparpclvcsdeasgcHygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacryrkclqagmnlear >1r71_AB: title=CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF KORB IN COMPLEX WITH THE OPERATOR DNA organism=Escherichia coli DNA sequence DA(E1):BRU(F17) BRU(E2):DA(F16) DT(E3):DA(F15) DT(E4):DA(F14) DT(E5):DA(F13) DA(E6):DT(F12) DG(E7):DC(F11) DC(E8):DG(F10) DG(E9):DC(F9) DG(E10):DC(F8) DC(E11):DG(F7) DT(E12):DA(F6) DA(E13):DT(F5) DA(E14):DT(F4) DA(E15):DT(F3) DA(E16):BRU(F2) DG(E17):DC(F1) chainA ( 43) SER181 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 ( 44) PRO182 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 45) ALA183 0 0 0 4 2 4 0 0 0 0 0 0 0 0 0 0 0 ( 46) PHE184 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 ( 48) THR186 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 49) GLN187 0 0 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 ( 71) ASP209 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 ( 73) THR211 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 (102) ARG240 0 0 0 0 0 0 6 9 12 0 0 0 0 0 0 0 0 chainB ( 45) SER181 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 ( 46) PRO182 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 ( 47) ALA183 0 0 0 0 0 0 0 0 0 0 0 4 3 4 0 0 0 ( 48) PHE184 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 50) THR186 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3 0 0 ( 51) GLN187 0 0 0 0 0 0 0 0 0 0 6 5 0 0 0 0 0 ( 73) ASP209 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 ( 75) THR211 0 0 0 0 0 0 0 0 0 1 5 0 0 0 0 0 0 (104) ARG240 0 0 0 0 0 0 0 0 15 10 6 0 0 0 0 0 0 prot.sequence eadqvienlqrneltpreiadfigrelakgkkkgdiakeigkSPAFiTQhvtlldlpekiadafntgrvrDvTvvnElvtafkkrpeeveawldddtqeitRgtvkllreflde/yneadqvienlqrneltpreiadfigrelakgkkkgdiakeigkSPAFiTQhvtlldlpekiadafntgrvrDvTvvnElvtafkkrpeeveawldddtqeitRgtvkllreflde >1r71_CD: title=CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF KORB IN COMPLEX WITH THE OPERATOR DNA organism=Escherichia coli DNA sequence DA(G1):BRU(H17) BRU(G2):DA(H16) DT(G3):DA(H15) DT(G4):DA(H14) DT(G5):DA(H13) DA(G6):DT(H12) DG(G7):DC(H11) DC(G8):DG(H10) DG(G9):DC(H9) DG(G10):DC(H8) DC(G11):DG(H7) DT(G12):DA(H6) DA(G13):DT(H5) DA(G14):DT(H4) DA(G15):DT(H3) DA(G16):BRU(H2) DG(G17):DC(H1) chainC ( 42) SER181 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 ( 43) PRO182 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 1 0 ( 44) ALA183 0 0 0 0 0 0 0 0 0 0 0 4 2 4 0 0 0 ( 45) PHE184 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 47) THR186 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3 0 0 ( 48) GLN187 0 0 0 0 0 0 0 0 0 0 6 4 0 0 0 0 0 ( 70) ASP209 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 ( 72) THR211 0 0 0 0 0 0 0 0 0 1 5 0 0 0 0 0 0 (101) ARG240 0 0 0 0 0 0 0 0 16 8 5 0 0 0 0 0 0 chainD ( 44) SER181 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 ( 45) PRO182 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) ALA183 0 0 0 3 1 3 0 0 0 0 0 0 0 0 0 0 0 ( 49) THR186 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 50) GLN187 0 0 0 0 0 4 3 0 0 0 0 0 0 0 0 0 0 ( 72) ASP209 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 74) THR211 0 0 0 0 0 0 5 1 0 0 0 0 0 0 0 0 0 (103) ARG240 0 0 0 0 0 0 6 11 13 0 0 0 0 0 0 0 0 prot.sequence adqvienlqrneltpreiadfigrelakgkkkgdiakeigkSPAFiTQhvtlldlpekiadafntgrvrDvTvvnElvtafkkrpeeveawldddtqeitRgtvkllrefld/neadqvienlqrneltpreiadfigrelakgkkkgdiakeigkSPAfiTQhvtlldlpekiadafntgrvrDvTvvnElvtafkkrpeeveawldddtqeitRgtvkllreflde >1r8d_AB: title=CRYSTAL STRUCTURE OF MTAN BOUND TO DNA organism=Bacillus subtilis DNA sequence DA(D-12):DT(C12) DA(D-11):DT(C11) DC(D-10):DG(C10) DA(D-9):DT(C9) DA(D-8):DT(C8) DT(D-7):DA(C7) DC(D-6):DG(C6) DA(D-5):DT(C5) DC(D-4):DG(C4) DG(D-3):DC(C3) DC(D-2):DG(C2) DA(D1):DT(C1) DA(D2):DT(C-2) DC(D3):DG(C-3) DG(D4):DC(C-4) DT(D5):DA(C-5) DT(D6):DA(C-6) DA(D7):DT(C-7) DG(D8):DC(C-8) DG(D9):DC(C-9) DG(D10):DC(C-10) DT(D11):DA(C-11) DC(D12):DG(C-12) chainA ( 17) ARG17 0 0 0 0 0 0 0 0 0 0 0 0 0 4 13 16 0 0 0 0 0 0 0 ( 20) HIS20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 ( 21) HIS21 0 0 0 0 0 0 0 0 0 0 0 0 2 10 0 0 0 0 0 0 0 0 0 ( 38) TYR38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 3 0 chainB ( 17) ARG17 0 0 0 0 0 0 0 14 14 5 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 20) HIS20 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 21) HIS21 0 0 0 0 0 0 0 0 0 8 8 0 0 0 0 0 0 0 0 0 0 0 0 ( 38) TYR38 0 3 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence mkyqvkqvaeisgvsiRtlHHydniellnpsaltdagYrlysdadlerlqqilffkeigfrldeikemldhpnfdrkaalqsqkeilmkkkqrmdemiqtidrtllsvd/mkyqvkqvaeisgvsiRtlHHydniellnpsaltdagYrlysdadlerlqqilffkeigfrldeikemldhpnfdrkaalqsqkeilmkkkqrmdemiqtidrtlls >1r8e_A:Probable_bacterial_effector-binding_domain;Putative_DNA-binding_domain; title=CRYSTAL STRUCTURE OF BMRR BOUND TO DNA AT 2.4A RESOLUTION organism=Bacillus subtilis DNA sequence DG(B-12) DA(B-11) DC(B-10) DC(B-9) DC(B-8) DT(B-7) DC(B-6) DC(B-5) DC(B-4) DC(B-3) DT(B-2) DT(B1) DA(B2) DG(B3) DG(B4) DG(B5) DG(B6) DA(B7) DG(B8) DG(B9) DG(B10) DT(B11) DC(B12) chainA ( 18) LYS20 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 21) ARG23 0 0 0 0 3 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 40) TYR42 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence esyysigevsklanvsiKalRyydkidlfkpayvdpdtsYryytdsqlihldlikslkyigtpleemkkaqdlemeelfafyteqerqirekldflsaleqtislvkkrmkrqmeypalgevfvldeeeiriiqteaegigpenvlnasysklkkfiesadgftnnsygatfsfqpytsidemtyrhiftpvltnkqissitpdmeittipkgryaciaynfspehyflnlqklikyiadrqltvvsdvyeliipihyspkkqeeyrvemkiria >1r9s_AB: title=RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MATCHED NUCLEOTIDE organism=SACCHAROMYCES CEREVISIAE DNA sequence DA(T1) DC(T2) DG(T3) DA(T4) DT(T5) DC(T6) DC(T7) DT(T8) DC(T9) DT(T10) DC(T11) DG(T12) DA(T13) DT(T14) chainA (316) ARG350 0 0 0 0 0 1 0 0 0 0 0 0 0 0 (413) GLN447 0 0 0 0 1 0 0 0 0 0 0 0 0 0 (414) PRO448 0 0 0 0 1 0 0 0 0 0 0 0 0 0 (797) THR831 0 0 0 13 0 0 0 0 0 0 0 0 0 0 (798) ALA832 0 0 0 3 0 0 0 0 0 0 0 0 0 0 (1322) ARG1386 6 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB prot.sequence vgqqyssaplrtvkevqfglfspeevraisvakirfpetmdetqtrakigglndprlgsidrnlkcqtcqegmnecpghfghidlakpvfhvgfiakikkvcecvcmhcgkllldehnelmrqalaikdskkrfaaiwtlcktkmvcetdvpslvsrggcgntqptirkdglklvgswklrvlsteeilnifkhisvkdftslgfnevfsrpewmiltclpvppppvrpseddltfkladilkanisletlehngaphhaieeaesllqfhvatymdndiagqpqapvksirarlkgkegrirgnlmgkrvdfsaRtvisgdpnleldqvgvpksiaktltypevvtpynidrltqlvrngpnehpgakyvirdsgdridlryskragdiqlqygwkverhimdndpvlfnrQPslhkmsmmahrvkvipystfrlnlsvtspynadfdgdemnlhvpqseetraelsqlcavplqivspqsnkpcmgivqdtlcgirkltlrdtfieldqvlnmlywvpdwdgviptpaiikpkplwsgkqilsvaipngihlqrfdegttllspkdngmliidgqiifgvvekktvgssngglihvvtrekgpqvcaklfgniqkvvnfwllhngfstgigdtiadgptmreitetiaeakkkvldvtkeaqanlltakhgmtlresfednvvrflneardkagrlaevnlkdlnnvkqmvmagskgsfiniaqmsacvgqqsvegkriafgfvdrtlphfskddyspeskgfvensylrgltpqefffhamggreglidtavkTAetgyiqrrlvkaledimvhydnttrnslgnviqfiygedgmdaahiekqsldtiggsdaafekryrvdllntdhtldpsllesgseilgdlklqvlldeeykqlvkdrkflrevfvdgeanwplpvnirriiqnaqqtfhidhtkpsdltikdivlgvkdlqenllvlrgkneiiqnaqrdavtlfccllrsrlatrrvlqeyrltkqafdwvlsnieaqflrsvvhpgemvgvlaaqsigepatqmtlkkvtsgvprlkeilnvaknmktpsltvylepghaadqeqaklirsaiehttlksvtiaseiyydpdprstvipedeeiiqlhfslqqspwllrleldraamndkdltmgqvgerikqtfkndlfviwsedndekliircrvvaeedhmlkkientmlenitlrgveniervvmmkydrkvpsptgeyvkepewvletdgvnlsevmtvpgidptriytnsfidimevlgieagraalykevynviasdgsyvnyrhmallvdvmttqggltsvtRhgfnrsntgalmrcsfeetveilfeagasaelddcrgvsenvilgqmapigtgafdvmi/desapitaedswavisaffrekglvsqqldsfnqfvdytlqdiicedstliisfgkiyvtkpmvnesdgvthalypqearlrnltyssglfvdvkkkvfigrlpimlrskncylseatesdlyklkecpfdmggyfiingsekvliaqersagnivqvfkkaapspishvaeirsalekgsrfistlqvklygregssartikatlpyikqdipiviifralgiipdgeilehicydvndwqmlemlkpcvedgfviqdretaldfigkekriqyakdilqkeflphitqlegfesrkafflgyminrlllcaldRkdqddrdhfgkkrldlagpllaqlfktlfkkltkdifrymqrtvelainaktitsglkyalatgnwgagvsqvlnrytysstlshlrrtntpiakpRQlhnthwglvcpaetpegqacglvknlslmscisvgtdpmpiitflsewgmepledyvphqspdatrvfvngvwhgvhrnparlmetlrtlrrkgdinpevsmirdirekelkiftdagrvyrplfiveddeslghkelkvrkghiaklmateyqdeytwssllneglveyidaeeeesiliamqpedlepaeadvdpakrirvshhattfthceihpsmilgvaasiipfpdhnqsprntyqsamgkqamgvfltnynvrmdtmanilyypqkplgttrameylkfrelpagqnaivaiacysgynqedsmimnqssidrglfrslffrsymdqekkygmsitetfekpqrtntlrmkhgtydkldddgliapgvrvsgedvIIgkttpisskrdastplrstengivdqvlvttnqdglkfvkvrvrttkipqigdkfasrhgqkgtigityrredmpftaegivpdliinphaipsrmtvahliecllskvaalsgnegdaspftditvegiskllrehgyqsrgfevmynghtgkklmaqiffgptyyqrlrhmvddkiharargpmqvltrqpvegrsrdgglrfgemerdcmiahgaasflkerlmeasdafrvhicgicglmtviaklnhnqfeckgcdnkidiyqihipyaakllfqelmamnitprlytdrsrdf >1ram_AB:p53-like_transcription_factors;E_set_domains; title=A NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMER organism=Mus musculus DNA sequence DC(C1):DG(D20) DG(C2):DC(D19) DG(C3):DC(D18) DC(C4):DG(D17) DT(C5):DA(D16) DG(C6):DC(D15) DG(C7):DC(D14) DA(C8):DT(D13) DA(C9):DT(D12) DA(C10):DT(D11) DT(C11):DA(D10) DT(C12):DA(D9) DT(C13):DA(D8) DC(C14):DG(D7) DC(C15):DG(D6) DA(C16):DT(D5) DG(C17):DC(D4) DC(C18):DG(D3) DC(C19):DG(D2) DG(C20):DC(D1) chainA ( 15) ARG33 0 0 0 0 0 0 0 0 0 0 0 0 4 13 7 0 0 0 0 0 ( 17) ARG35 0 0 0 0 0 0 0 0 0 0 0 0 0 2 12 9 0 0 0 0 ( 18) TYR36 0 0 0 0 0 0 0 0 0 0 0 9 3 0 0 0 0 0 0 0 ( 20) CYS38 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 ( 21) GLU39 0 0 0 0 0 0 0 0 0 0 0 0 3 6 1 0 0 0 0 0 (169) ARG187 0 0 0 0 0 0 0 0 0 0 0 7 7 0 0 0 0 0 0 0 (200) LYS218 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 chainB ( 18) TYR36 0 0 0 0 0 0 0 0 2 4 0 0 0 0 0 0 0 0 0 0 ( 20) CYS38 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 ( 21) GLU39 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 (169) ARG187 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 prot.sequence pyveiieqpkqrgmRfRYkCEgrsagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdKvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd/pyveiieqpkqrgmrfrYkCEgrsagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd >1ram_B:p53-like_transcription_factors;E_set_domains; title=A NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMER organism=Mus musculus DNA sequence DC(C1):DG(D20) DG(C2):DC(D19) DG(C3):DC(D18) DC(C4):DG(D17) DT(C5):DA(D16) DG(C6):DC(D15) DG(C7):DC(D14) DA(C8):DT(D13) DA(C9):DT(D12) DA(C10):DT(D11) DT(C11):DA(D10) DT(C12):DA(D9) DT(C13):DA(D8) DC(C14):DG(D7) DC(C15):DG(D6) DA(C16):DT(D5) DG(C17):DC(D4) DC(C18):DG(D3) DC(C19):DG(D2) DG(C20):DC(D1) chainB ( 18) TYR36 0 0 0 0 0 0 0 0 2 4 0 0 0 0 0 0 0 0 0 0 ( 20) CYS38 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 ( 21) GLU39 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 (169) ARG187 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 prot.sequence pyveiieqpkqrgmrfrYkCEgrsagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd >1rcs_A:TrpR-like; title=NMR STUDY OF TRP REPRESSOR-OPERATOR DNA COMPLEX organism=ESCHERICHIA COLI DNA sequence DC(E1):DG(F20) DG(E2):DC(F19) DT(E3):DA(F18) DA(E4):DT(F17) DC(E5):DG(F16) DT(E6):DA(F15) DA(E7):DT(F14) DG(E8):DC(F13) DT(E9):DA(F12) DT(E10):DA(F11) DA(E11):DT(F10) DA(E12):DT(F9) DC(E13):DG(F8) DT(E14):DA(F7) DA(E15):DT(F6) DG(E16):DC(F5) DT(E17):DA(F4) DA(E18):DT(F3) DC(E19):DG(F2) DG(E20):DC(F1) chainA ( 65) GLN68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 ( 66) ARG69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 11 0 ( 69) LYS72 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 ( 76) ILE79 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 11 0 0 0 ( 77) ALA80 0 0 0 0 0 0 0 0 0 0 0 0 0 4 3 2 0 0 0 0 ( 78) THR81 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 ( 80) THR83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 ( 81) ARG84 0 0 0 0 0 0 0 0 0 0 0 0 7 5 0 0 0 0 0 0 prot.sequence qspysaamaeqrhqewlrfvdllknayqndlhlpllnlmltpderealgtrvriveellrgemsQRelKnelgagIATiTRgsnslkaapvelrqwleevllks >1rcs_AB: title=NMR STUDY OF TRP REPRESSOR-OPERATOR DNA COMPLEX organism=ESCHERICHIA COLI DNA sequence DC(E1):DG(F20) DG(E2):DC(F19) DT(E3):DA(F18) DA(E4):DT(F17) DC(E5):DG(F16) DT(E6):DA(F15) DA(E7):DT(F14) DG(E8):DC(F13) DT(E9):DA(F12) DT(E10):DA(F11) DA(E11):DT(F10) DA(E12):DT(F9) DC(E13):DG(F8) DT(E14):DA(F7) DA(E15):DT(F6) DG(E16):DC(F5) DT(E17):DA(F4) DA(E18):DT(F3) DC(E19):DG(F2) DG(E20):DC(F1) chainA ( 65) GLN68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 ( 66) ARG69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 11 0 ( 69) LYS72 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 ( 76) ILE79 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 11 0 0 0 ( 77) ALA80 0 0 0 0 0 0 0 0 0 0 0 0 0 4 3 2 0 0 0 0 ( 78) THR81 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 ( 80) THR83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 ( 81) ARG84 0 0 0 0 0 0 0 0 0 0 0 0 7 5 0 0 0 0 0 0 chainB ( 65) GLN568 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 66) ARG569 0 11 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 69) LYS572 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 76) ILE579 0 0 0 6 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 77) ALA580 0 0 0 0 2 5 4 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 78) THR581 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 80) THR583 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 81) ARG584 0 0 0 0 0 0 6 8 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence qspysaamaeqrhqewlrfvdllknayqndlhlpllnlmltpderealgtrvriveellrgemsQRelKnelgagIATiTRgsnslkaapvelrqwleevllks/qspysaamaeqrhqewlrfvdllknayqndlhlpllnlmltpderealgtrvriveellrgemsQRelKnelgagIATiTRgsnslkaapvelrqwleevllks >1rep_C:"Winged_helix"_DNA-binding_domain; title=CRYSTAL STRUCTURE OF REPLICATION INITIATOR PROTEIN REPE54 OF MINI-F PLASMID COMPLEXED WITH AN ITERON DNA organism=Escherichia coli DNA sequence DC(A1):DG(B43) DC(A2):DG(B42) DT(A3):DA(B41) DG(A4):DC(B40) DT(A5):DA(B39) DG(A6):DC(B38) DA(A7):DT(B37) DC(A8):DG(B36) DA(A9):DT(B35) DA(A10):DT(B34) DA(A11):DT(B33) DT(A12):DA(B32) DT(A13):DA(B31) DG(A14):DC(B30) DC(A15):DG(B29) DC(A16):DG(B28) DC(A17):DG(B27) DT(A18):DA(B26) DC(A19):DG(B25) DA(A20):DT(B24) DG(A21):DC(B23) chainC ( 55) SER75 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 ( 56) ALA76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 ( 57) GLU77 0 0 0 0 0 0 0 0 0 0 0 0 0 3 7 0 0 0 0 0 0 ( 59) SER79 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 ( 60) LYS80 0 0 0 0 0 0 0 0 0 0 0 0 0 1 7 1 0 0 0 0 0 ( 63) ARG83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 ( 92) ARG124 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 6 0 (165) SER197 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (166) TYR198 0 0 0 0 0 0 1 4 0 0 0 0 0 0 0 0 0 0 0 0 0 (168) ARG200 0 0 4 12 9 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (170) PRO202 0 0 4 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (171) ASP203 0 0 0 0 2 7 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (174) ARG206 0 0 0 0 12 11 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (175) ARG207 0 0 0 0 0 0 5 18 13 0 0 0 0 0 0 0 0 0 0 0 0 (201) ARG233 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence sprivqsndlteaayslsrdqkrmlylfvdqirkshdgiceihvakyaeifgltSAEaSKdiRqalksfagkevvfyesfpwfikpahspsRglysvhinpylipffiglqnrftqfrlsetkeitnpyamrlyeslcqyrkpdgsgivslkidwiieryqlpqSYqRmPDfrRRflqvcvneinsrtpmrlsyiekkkgRqtthivfsfrdit >1rh6_AB:Putative_DNA-binding_domain; title=BACTERIOPHAGE LAMBDA EXCISIONASE (XIS)-DNA COMPLEX organism=ENTEROBACTERIA PHAGE LAMBDA DNA sequence DC(D16):DG(C15) DA(D17):DT(C14) DA(D18):DT(C13) DC(D19):DG(C12) DA(D20):DT(C11) DG(D21):DC(C10) DA(D22):DT(C9) DC(D23):DG(C8) DT(D24):DA(C7) DA(D25):DT(C6) DC(D26):DG(C5) DA(D27):DT(C4) DT(D28):DA(C3) DA(D29):DT(C2) chainA chainB ( 19) GLU19 0 0 0 0 0 0 0 6 4 2 0 0 0 0 ( 20) THR20 0 0 0 0 0 0 0 0 0 0 1 0 0 0 ( 22) ARG22 0 0 0 0 0 5 0 0 0 0 0 0 0 0 ( 23) ARG23 0 0 0 0 0 0 0 0 4 6 12 4 0 0 ( 26) ARG26 0 0 0 0 0 0 3 6 0 0 0 0 0 0 ( 39) ARG39 0 1 6 9 0 0 0 0 0 0 0 0 0 0 prot.sequence myltlqewnarqrrprsletvrrwvresrifpppvkdgreylfhesavkvdlnrp/myltlqewnarqrrprslETvRRwvResrifpppvkdgReylfhesavkvdl >1rh6_B:Putative_DNA-binding_domain; title=BACTERIOPHAGE LAMBDA EXCISIONASE (XIS)-DNA COMPLEX organism=ENTEROBACTERIA PHAGE LAMBDA DNA sequence DT(C2):DA(D29) DA(C3):DT(D28) DT(C4):DA(D27) DG(C5):DC(D26) DT(C6):DA(D25) DA(C7):DT(D24) DG(C8):DC(D23) DT(C9):DA(D22) DC(C10):DG(D21) DT(C11):DA(D20) DG(C12):DC(D19) DT(C13):DA(D18) DT(C14):DA(D17) DG(C15):DC(D16) chainB ( 19) GLU19 0 0 0 0 2 4 6 0 0 0 0 0 0 0 ( 20) THR20 0 0 0 1 0 0 0 0 0 0 0 0 0 0 ( 22) ARG22 0 0 0 0 0 0 0 0 5 0 0 0 0 0 ( 23) ARG23 0 0 4 12 6 4 0 0 0 0 0 0 0 0 ( 26) ARG26 0 0 0 0 0 0 6 3 0 0 0 0 0 0 ( 39) ARG39 0 0 0 0 0 0 0 0 0 0 9 6 1 0 prot.sequence myltlqewnarqrrprslETvRRwvResrifpppvkdgReylfhesavkvdl >1rio_A:lambda_repressor-like_DNA-binding_domains; title=STRUCTURE OF BACTERIOPHAGE LAMBDA CI-NTD IN COMPLEX WITH SIGMA- REGION4 OF THERMUS AQUATICUS BOUND TO DNA organism=ENTEROBACTERIA PHAGE LAMBDA DNA sequence DC(U1):DG(T27) DG(U2):DC(T26) DG(U3):DC(T25) DT(U4):DA(T24) DA(U5):DT(T23) DT(U6):DA(T22) DC(U7):DG(T21) DA(U8):DT(T20) DC(U9):DG(T19) DC(U10):DG(T18) DG(U11):DC(T17) DC(U12):DG(T16) DC(U13):DG(T15) DA(U14):DT(T14) DG(U15):DC(T13) DT(U16):DA(T12) DG(U17):DC(T11) DC(U18):DG(T10) DT(U19):DA(T9) DT(U20):DA(T8) DG(U21):DC(T7) DA(U22):DT(T6) DC(U23):DG(T5) DA(U24):DT(T4) DT(U25):DA(T3) DG(U26):DC(T2) DG(U27):DC(T1) chainA ( 3) LYS4 0 0 0 0 0 0 0 0 0 14 13 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 4) LYS5 0 0 0 0 0 0 0 0 10 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 44) GLN45 0 0 0 11 9 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 45) SER46 0 0 0 0 0 1 9 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 55) ASN56 0 0 0 0 0 0 0 0 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence stKKkpltqeqledarrlkaiyekkknelglsqesvadkmgmgQSgvgalfngiNalnaynaallakilkvsveefspsiareiyemyeavhhhhhh >1rio_ABH:lambda_repressor-like_DNA-binding_domains; title=STRUCTURE OF BACTERIOPHAGE LAMBDA CI-NTD IN COMPLEX WITH SIGMA- REGION4 OF THERMUS AQUATICUS BOUND TO DNA organism=THERMUS AQUATICUS / ENTEROBACTERIA PHAGE LAMBDA DNA sequence DC(T1):DG(U27) DC(T2):DG(U26) DA(T3):DT(U25) DT(T4):DA(U24) DG(T5):DC(U23) DT(T6):DA(U22) DC(T7):DG(U21) DA(T8):DT(U20) DA(T9):DT(U19) DG(T10):DC(U18) DC(T11):DG(U17) DA(T12):DT(U16) DC(T13):DG(U15) DT(T14):DA(U14) DG(T15):DC(U13) DG(T16):DC(U12) DC(T17):DG(U11) DG(T18):DC(U10) DG(T19):DC(U9) DT(T20):DA(U8) DG(T21):DC(U7) DA(T22):DT(U6) DT(T23):DA(U5) DA(T24):DT(U4) DC(T25):DG(U3) DC(T26):DG(U2) DG(T27):DC(U1) chainH ( 43) THR408 0 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 44) ARG409 0 0 0 7 13 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 45) GLU410 0 0 0 0 0 4 11 8 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) ARG411 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 48) ARG413 0 0 0 0 0 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 49) GLN414 0 0 0 0 0 0 0 1 8 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainA ( 3) LYS4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 13 14 0 0 0 0 0 0 0 0 0 ( 4) LYS5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 10 0 0 0 0 0 0 0 0 ( 44) GLN45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 9 11 0 0 0 ( 45) SER46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 9 1 0 0 0 0 0 ( 55) ASN56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 6 0 0 0 0 0 0 0 0 chainB ( 4) LYS5 0 0 0 0 0 0 0 0 0 0 0 0 7 6 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 44) GLN45 0 0 0 0 0 0 0 8 10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 45) SER46 0 0 0 0 0 0 0 0 0 5 9 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 55) ASN56 0 0 0 0 0 0 0 0 0 0 0 0 6 7 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence stKKkpltqeqledarrlkaiyekkknelglsqesvadkmgmgQSgvgalfngiNalnaynaallakilkvsveefspsiareiyemyeavhhhhhh/stkKkpltqeqledarrlkaiyekkknelglsqesvadkmgmgQSgvgalfngiNalnaynaallakilkvsveefspsiareiyemyeavhhhhh/seelekalsklsereamvlklrkglidgrehtleevgayfgvTRERiRQienkalrklkyh >1rm1_A:TATA-box_binding_protein-like; title=STRUCTURE OF A YEAST TFIIA/TBP/TATA-BOX DNA COMPLEX organism=SACCHAROMYCES CEREVISIAE DNA sequence DA(D1):DT(E36) DT(D2):DA(E35) DC(D3):DG(E34) DG(D4):DC(E33) DA(D5):DT(E32) DT(D6):DA(E31) DC(D7):DG(E30) DG(D8):DC(E29) DA(D9):DT(E28) DT(D10):DA(E27) DA(D11):DT(E26) DT(D12):DA(E25) DA(D13):DT(E24) DA(D14):DT(E23) DA(D15):DT(E22) DA(D16):DT(E21) DC(D17):DG(E20) DG(D18):DC(E19) chainA ( 9) ASN69 0 0 0 0 0 0 0 0 0 0 0 0 5 5 0 0 0 0 ( 11) VAL71 0 0 0 0 0 0 0 0 0 0 0 0 0 6 2 0 0 0 ( 39) PHE99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 7 0 ( 54) LEU114 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 4 0 0 ( 56) PHE116 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 1 0 ( 62) VAL122 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 1 0 0 ( 64) THR124 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 ( 99) ASN159 0 0 0 0 0 0 0 0 0 0 0 0 6 4 0 0 0 0 (101) VAL161 0 0 0 0 0 0 0 0 0 0 0 2 5 0 0 0 0 0 (130) PHE190 0 0 0 0 0 0 0 0 0 11 25 0 0 0 0 0 0 0 (131) PRO191 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 (145) LEU205 0 0 0 0 0 0 0 0 0 0 3 3 0 0 0 0 0 0 (147) PHE207 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 (153) VAL213 0 0 0 0 0 0 0 0 0 0 1 5 0 0 0 0 0 0 (155) THR215 0 0 0 0 0 0 0 0 0 0 0 2 8 0 0 0 0 0 prot.sequence sgivptlqNiVatvtlgcrldlktvalharnaeynpkrFaavimrirepkttaLiFasgkmVvTgakseddsklasrkyariiqkigfaakftdfkiqNiVgscdvkfpirleglafshgtfssyepelFPgliyrmvkpkivlLiFvsgkiVlTgakqreeiyqafeaiypvlsefrkm >1rm1_AC:Transcription_factor_IIA_TFIIA,_beta-barrel_domain;Transcription_factor_IIA_TFIIA,_alpha-helical_domain; title=STRUCTURE OF A YEAST TFIIA/TBP/TATA-BOX DNA COMPLEX organism=SACCHAROMYCES CEREVISIAE DNA sequence DA(D1):DT(E36) DT(D2):DA(E35) DC(D3):DG(E34) DG(D4):DC(E33) DA(D5):DT(E32) DT(D6):DA(E31) DC(D7):DG(E30) DG(D8):DC(E29) DA(D9):DT(E28) DT(D10):DA(E27) DA(D11):DT(E26) DT(D12):DA(E25) DA(D13):DT(E24) DA(D14):DT(E23) DA(D15):DT(E22) DA(D16):DT(E21) DC(D17):DG(E20) DG(D18):DC(E19) chainA ( 9) ASN69 0 0 0 0 0 0 0 0 0 0 0 0 5 5 0 0 0 0 ( 11) VAL71 0 0 0 0 0 0 0 0 0 0 0 0 0 6 2 0 0 0 ( 39) PHE99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 7 0 ( 54) LEU114 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 4 0 0 ( 56) PHE116 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 1 0 ( 62) VAL122 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 1 0 0 ( 64) THR124 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 ( 99) ASN159 0 0 0 0 0 0 0 0 0 0 0 0 6 4 0 0 0 0 (101) VAL161 0 0 0 0 0 0 0 0 0 0 0 2 5 0 0 0 0 0 (130) PHE190 0 0 0 0 0 0 0 0 0 11 25 0 0 0 0 0 0 0 (131) PRO191 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 (145) LEU205 0 0 0 0 0 0 0 0 0 0 3 3 0 0 0 0 0 0 (147) PHE207 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 (153) VAL213 0 0 0 0 0 0 0 0 0 0 1 5 0 0 0 0 0 0 (155) THR215 0 0 0 0 0 0 0 0 0 0 0 2 8 0 0 0 0 0 chainC prot.sequence sgivptlqNiVatvtlgcrldlktvalharnaeynpkrFaavimrirepkttaLiFasgkmVvTgakseddsklasrkyariiqkigfaakftdfkiqNiVgscdvkfpirleglafshgtfssyepelFPgliyrmvkpkivlLiFvsgkiVlTgakqreeiyqafeaiypvlsefrkm/snaeasrvYeIivesvvnevredfenagideqtlqdlkNiwqkkltetkvttfSwDnqfndYlIsedgpdenlmlclydkvtrtkarwkcslkdgvvtInRndytfqkaqveaewv >1rpe_LR: title=THE PHAGE 434 OR2/R1-69 COMPLEX AT 2.5 ANGSTROMS RESOLUTION organism=PHAGE 434 DNA sequence DC(A22):DG(B20) DA(A23):DT(B19) DA(A24):DT(B18) DA(A25):DT(B17) DC(A26):DG(B16) DA(A27):DT(B15) DA(A28):DT(B14) DG(A29):DC(B13) DA(A30):DT(B12) DT(A31):DA(B11) DA(A32):DT(B10) DC(A33):DG(B9) DA(A34):DT(B8) DT(A35):DA(B7) DT(A36):DA(B6) DG(A37):DC(B5) DT(A38):DA(B4) DA(A39):DT(B3) DT(A40):DA(B2) chainL ( 17) GLN17 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 27) THR27 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) GLN28 0 0 9 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) GLN29 0 0 0 4 7 13 1 0 0 0 0 0 0 0 0 0 0 0 0 ( 30) SER30 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 ( 32) GLU32 0 0 0 8 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 33) GLN33 0 0 0 0 0 0 7 6 0 0 0 0 0 0 0 0 0 0 0 ( 43) ARG43 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 chainR ( 27) THR27 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 0 ( 28) GLN28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 12 0 ( 29) GLN29 0 0 0 0 0 0 0 0 0 0 0 0 0 2 18 7 4 0 0 ( 30) SER30 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 ( 32) GLU32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 9 0 0 ( 33) GLN33 0 0 0 0 0 0 0 0 0 0 0 0 4 5 0 0 0 0 0 prot.sequence sissrvkskriqlglnQaelaqkvgtTQQSiEQlengKtkrpRflpelasalgvsvdwllngt/sissrvkskriqlglnqaelaqkvgtTQQSiEQlengktkrprflpelasalgvsvdwllngt >1rpe_R:lambda_repressor-like_DNA-binding_domains; title=THE PHAGE 434 OR2/R1-69 COMPLEX AT 2.5 ANGSTROMS RESOLUTION organism=? DNA sequence DC(A22):DG(B20) DA(A23):DT(B19) DA(A24):DT(B18) DA(A25):DT(B17) DC(A26):DG(B16) DA(A27):DT(B15) DA(A28):DT(B14) DG(A29):DC(B13) DA(A30):DT(B12) DT(A31):DA(B11) DA(A32):DT(B10) DC(A33):DG(B9) DA(A34):DT(B8) DT(A35):DA(B7) DT(A36):DA(B6) DG(A37):DC(B5) DT(A38):DA(B4) DA(A39):DT(B3) DT(A40):DA(B2) chainR ( 27) THR27 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 0 ( 28) GLN28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 12 0 ( 29) GLN29 0 0 0 0 0 0 0 0 0 0 0 0 0 2 18 7 4 0 0 ( 30) SER30 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 ( 32) GLU32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 9 0 0 ( 33) GLN33 0 0 0 0 0 0 0 0 0 0 0 0 4 5 0 0 0 0 0 prot.sequence sissrvkskriqlglnqaelaqkvgtTQQSiEQlengktkrprflpelasalgvsvdwllngt >1rr8_C:Eukaryotic_DNA_topoisomerase_I,_N-terminal_DNA-binding_fragment;DNA_breaking-rejoining_enzymes; title=STRUCTURAL MECHANISMS OF CAMPTOTHECIN RESISTANCE BY MUTATIONS IN HUMAN TOPOISOMERASE I organism=Homo sapiens DNA sequence DA(B101):DT(A22) DA(B102):DT(A21) DA(B103):DT(A20) DA(B104):DT(A19) DA(B105):DT(A18) DT(B106):DA(A17) DT(B107):DA(A16) DT(B108):DA(A15) DT(B109):DA(A14) DT(B110):DA(A13) DC(B111):DG(A12) DC(B112):DG(A11) DA(B113):DT(A10) DA(B114):DT(A9) DG(B115):DC(A8) DT(B116):DA(A7) DC(B117):DG(A6) DT(B118):DA(A5) DT(B119):DA(A4) DT(B120):DA(A3) DT(B121):DA(A2) DT(B122):DA(A1) chainC (156) GLU356 0 0 0 0 0 0 0 0 0 0 0 10 0 0 0 0 0 0 0 0 0 0 (164) ARG364 0 0 0 0 0 0 0 0 0 0 0 2 5 0 0 0 0 0 0 0 0 0 (225) LYS425 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 (226) TYR426 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 9 0 0 0 0 0 0 (228) MET428 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 (236) LYS436 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 (291) ASN491 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 0 0 0 (332) LYS532 0 0 0 0 0 0 0 0 0 0 0 0 4 4 0 0 0 0 0 0 0 0 (451) ASN722 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 prot.sequence aawkwweeerypegikwkflehkgpvfappyeplpenvkfyydgkvmklspkaeevatffakmldheyttkeifrknffkdwrkemtneekniitnlskcdftqmsqyfkaqtearkqmskeeklkikeenekllkeygfcimdnhkerianfkiEppglsrgRgnhpkmgmlkrrimpediiincskdakvpspppghkwkevrhdnkvtwlvswteniqgsiKYiMlnpssriKgekdwqkyetarrlkkcvdkirnqyredwkskemkvrqravalyfidklalragNekeegetadtvgccslrvehinlhpeldgqeyvvefdflgKdsiryynkvpvekrvfknlqlfmenkqpeddlfdrlntgilnkhlqdlmegltakvfrtynasitlqqqlkeltapdenipakilsynranravailcnhqqapreenkqialgtsklNldpritvawckkwgvpiekiynktqrekfawaidmadedyef >1rrj_A:Eukaryotic_DNA_topoisomerase_I,_N-terminal_DNA-binding_fragment;DNA_breaking-rejoining_enzymes;Eukaryotic_DNA_topoisomerase_I,_dispensable_insert_domain; title=STRUCTURAL MECHANISMS OF CAMPTOTHECIN RESISTANCE BY MUTATIONS IN HUMAN TOPOISOMERASE I organism=Homo sapiens DNA sequence DA(C101):DT(B22) DA(C102):DT(B21) DA(C103):DT(B20) DA(C104):DT(B19) DA(C105):DT(B18) DT(C106):DA(B17) DT(C107):DA(B16) DT(C108):DA(B15) DT(C109):DA(B14) DT(C110):DA(B13) DC(C111):DG(B12) DC(C112):DG(B11) DA(C113):DT(B10) DA(C114):DT(B9) DG(C115):DC(B8) DT(C116):DA(B7) DC(C117):DG(B6) DT(C118):DA(B5) DT(C119):DA(B4) DT(C120):DA(B3) DT(C121):DA(B2) DT(C122):DA(B1) chainA (156) GLU356 0 0 0 0 0 0 0 0 0 0 0 16 0 0 0 0 0 0 0 0 0 0 (164) ARG364 0 0 0 0 0 0 0 0 0 0 0 2 6 0 0 0 0 0 0 0 0 0 (225) LYS425 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 (226) TYR426 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 8 0 0 0 0 0 0 (228) MET428 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 (236) LYS436 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 (291) ASN491 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3 0 0 0 0 0 (332) LYS532 0 0 0 0 0 0 0 0 0 0 0 0 4 3 0 0 0 0 0 0 0 0 (440) PHE640 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence qkwkwweeerypegikwkflehkgpvfappyeplpenvkfyydgkvmklspkaeevatffakmldheyttkeifrknffkdwrkemtneekniitnlskcdftqmsqyfkaqtearkqmskeeklkikeenekllkeygfcimdnhkerianfkiEppglfrgRgnhpkmgmlkrrimpediiincskdakvpspppghkwkevrhdnkvtwlvswteniqgsiKYiMlnpssriKgekdwqkyetarrlkkcvdkirnqyredwkskemkvrqravalyfidklalragNekeegetadtvgccslrvehinlhpeldgqeyvvefdflgKdsiryynkvpvekrvfknlqlfmenkqpeddlfdrlntgilnkhlqdlmegltakvfrtynasitlqqqlkeltapdenipakilsynranravailcnhqrappktFeksmmnlqtkidakkeqladarrdlksakadakvmkdaktkkvveskkkavqrleeqlmklevqatdreenkqialgtsklsldpritvawckkwgvpiekiynktqrekfawaidmadedyef >1rrq_A:Nudix;DNA-glycosylase; title=MUTY ADENINE GLYCOSYLASE IN COMPLEX WITH DNA CONTAINING AN A:OXOG PAIR organism=GEOBACILLUS STEAROTHERMOPHILUS DNA sequence DG(C13):DC(B11) DT(C14):DA(B10) DC(C15):DG(B9) DC(C16):DG(B8) DA(C17):DT(B7) DA(C18):8OG(B6) DG(C19):DC(B5) DT(C20):DA(B4) DC(C21):DG(B3) DT(C22):DA(B2) chainA ( 18) ARG26 0 0 0 0 0 5 0 0 0 0 ( 20) LEU28 0 0 0 0 0 1 0 0 0 0 ( 22) TRP30 0 0 0 0 0 2 0 0 0 0 ( 23) ARG31 0 0 0 0 0 2 0 0 0 0 ( 35) GLU43 0 0 0 0 0 7 0 0 0 0 ( 38) LEU46 0 0 0 0 0 10 0 0 0 0 ( 40) GLN48 0 0 0 0 12 4 19 0 0 0 ( 41) THR49 0 0 0 0 0 5 0 0 0 0 ( 42) ARG50 0 0 2 11 28 0 0 0 0 0 ( 43) VAL51 0 0 0 0 0 4 0 0 0 0 ( 80) TYR88 0 0 0 0 0 39 33 0 0 0 ( 83) ARG91 0 0 0 0 0 1 0 0 0 0 (118) TYR126 0 0 0 0 0 3 0 0 0 0 (136) ASN144 0 0 0 0 0 1 0 0 0 0 (156) CYS164 0 0 0 0 0 0 0 0 0 3 (183) ILE191 0 0 0 0 0 10 0 0 0 0 (184) GLU192 0 0 0 0 0 2 0 0 0 0 (187) ALA195 0 0 0 0 0 2 0 0 0 0 (291) PHE307 0 0 0 0 0 3 0 0 0 0 (292) SER308 0 0 0 0 2 9 3 0 0 0 (293) HIS309 0 0 0 0 0 0 3 0 0 0 prot.sequence parefqrdlldwfarerRdLpWRkdrdpykvwvsEvmLQQtRVeTvipyfeqfidrfptlealadadedevlkaweglgYysrvrnlhaavkevktryggkvpddpdefsrlkgvgpYtvgavlslaygvpepavNgnvmrvlsrlflvtddiakCstrkrfeqivreimayenpgafnealIElgAlvctprrpscllcpvqaycqafaegvaeelpvkmvkqvplavavladdegrvlirkrdstgllanlwefpscetdgadgkekleqmvglqveltepivsfehafSHlvwqltvfpgrlvhggpveepyrlapedelkayafpvshqrvwreykewas >1rrs_A:DNA-glycosylase;Nudix; title=MUTY ADENINE GLYCOSYLASE IN COMPLEX WITH DNA CONTAINING AN ABASIC SITE organism=GEOBACILLUS STEAROTHERMOPHILUS DNA sequence DA(B2):DT(C22) DG(B3):DC(C21) DA(B4):DT(C20) DC(B5):DG(C19) 8OG(B6):HPD(C18) DT(B7):DA(C17) DG(B8):DC(C16) DG(B9):DC(C15) DA(B10):DT(C14) DC(B11):DG(C13) chainA ( 40) GLN48 0 0 0 44 4 5 0 0 0 0 ( 41) THR49 0 0 0 0 4 0 0 0 0 0 ( 42) ARG50 0 0 0 0 0 1 0 0 0 0 ( 80) TYR88 0 0 0 70 39 0 0 0 0 0 ( 83) ARG91 0 0 0 0 2 0 0 0 0 0 (292) PHE307 0 0 0 0 3 0 0 0 0 0 (293) SER308 0 0 0 8 9 1 0 0 0 0 (294) HIS309 0 0 0 8 0 0 0 0 0 0 prot.sequence parefqrdlldwfarerrdlpwrkdrdpykvwvsevmlQQtRvetvipyfeqfidrfptlealadadedevlkaweglgYysrvrnlhaavkevktryggkvpddpdefsrlkgvgpytvgavlslaygvpepavngnvmrvlsrlflvtddiakpstrkrfeqivreimayenpgafnealielgalvctprrpscllcpvqaycqafaegvaeelpvkmkvkqvplavavladdegrvlirkrdstgllanlwefpscetdgadgkekleqmvglqveltepivsfehafSHlvwqltvfpgrlvhggpveepyrlapedelkayafpvshqrvwreykewas >1rtd_AB:DNA/RNA_polymerases;Ribonuclease_H-like; title=STRUCTURE OF A CATALYTIC COMPLEX OF HIV-1 REVERSE TRANSCRIPTASE: IMPLICATIONS FOR NUCLEOSIDE ANALOG DRUG RESISTANCE organism=HUMAN IMMUNODEFICIENCY VIRUS 1 DNA sequence DA(E5):TTP(A700) DC(E6):DG(F22) DC(E7):DG(F21) DG(E8):DC(F20) DG(E9):DC(F19) DC(E10):DG(F18) DG(E11):DC(F17) DC(E12):DG(F16) DT(E13):DA(F15) DC(E14):DG(F14) DG(E15):DC(F13) DA(E16):DT(F12) DA(E17):DT(F11) DC(E18):DG(F10) DA(E19):DT(F9) DG(E20):DC(F8) DG(E21):DC(F7) DG(E22):DC(F6) DA(E23):DT(F5) DC(E24):DG(F4) DT(E25):DA(F3) DG(E26):DC(F2) chainA ( 61) PHE61 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 65) LYS65 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 72) ARG72 26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 74) LEU74 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 94) ILE94 0 0 0 6 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (110) ASP110 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (113) ASP113 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (114) ALA114 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (115) TYR115 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (151) GLN151 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (157) PRO157 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (183) TYR183 0 0 11 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (184) MET184 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (185) ASP185 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (258) CYS258 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (448) ARG448 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 5 2 0 0 (475) GLN475 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 1 0 0 0 0 0 chainB prot.sequence kispietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvFaikkkdstkwrkLvdfrelnkrtqdfwevqlgIphpaglkkkksvtvldvgdaYfsvpldedfrkytaftipsinnetpgiryqynvlpqgwkgsPaifqssmtkilepfrkqnpdiviyqYMddlyvgsdleigqhrtkieelrqhllrwglttpdkkhqkeppflwmgyelhpdkwtvqpivlpekdswtvndiCklvgklnwasqiypgikvrqlckllrgtkalteviplteeaelelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyarmrgahtndvkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwipewefvntpplvklwyqlekepivgaetfyvdgaanRetklgkagyvtnkgrqkvvpltdttnQktqlqaiylalqdsglevnivtdsqyalgiiqaqpdeseselvnqiieqlikkekvylawvpahkgiggneqvdklvsa/spietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaIkkkdstkwrklvDfrelnkrtqdfwevqlgipHpaglkkkksvtvldvgdayfSvpldedfrkytaftipsinnetpgiryqynvlpqgwkgspaIfqssmtkilepfrkqnpdiviyqymDDlyvgsdleigqhrtkieelrqhllrwglttpgyelhpdkwtvqpivlpekdswtvndiqklvgklnwasqiypGikvrqlckllrgtkalteviplteeaelelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyarmrgahtndvkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwipewefvntpplvklwyql >1rtd_CD:DNA/RNA_polymerases;Ribonuclease_H-like; title=STRUCTURE OF A CATALYTIC COMPLEX OF HIV-1 REVERSE TRANSCRIPTASE: IMPLICATIONS FOR NUCLEOSIDE ANALOG DRUG RESISTANCE organism=HUMAN IMMUNODEFICIENCY VIRUS 1 DNA sequence DC(H2):DG(G26) DA(H3):DT(G25) DG(H4):DC(G24) DT(H5):DA(G23) DC(H6):DG(G22) DC(H7):DG(G21) DC(H8):DG(G20) DT(H9):DA(G19) DG(H10):DC(G18) DT(H11):DA(G17) DT(H12):DA(G16) DC(H13):DG(G15) DG(H14):DC(G14) DA(H15):DT(G13) DG(H16):DC(G12) DC(H17):DG(G11) DG(H18):DC(G10) DC(H19):DG(G9) DC(H20):DG(G8) DG(H21):DC(G7) DG(H22):DC(G6) TTP(C705):DA(G5) chainC ( 61) PHE61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 ( 65) LYS65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 ( 72) ARG72 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28 ( 74) LEU74 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19 ( 94) ILE94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 2 0 0 0 (110) ASP110 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 (113) ASP113 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 (114) ALA114 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 (115) TYR115 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 (116) PHE116 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 (151) GLN151 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 (157) PRO157 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 (183) TYR183 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 11 0 0 (184) MET184 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 (185) ASP185 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 (258) CYS258 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 (448) ARG448 0 0 2 5 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (475) GLN475 0 0 0 0 0 1 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainD prot.sequence kispietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvFaikkkdstkwrkLvdfrelnkrtqdfwevqlgIphpaglkkkksvtvldvgdaYfsvpldedfrkytaftipsinnetpgiryqynvlpqgwkgsPaifqssmtkilepfrkqnpdiviyqYMddlyvgsdleigqhrtkieelrqhllrwglttpdkkhqkeppflwmgyelhpdkwtvqpivlpekdswtvndiCklvgklnwasqiypgikvrqlckllrgtkalteviplteeaelelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyarmrgahtndvkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwipewefvntpplvklwyqlekepivgaetfyvdgaanRetklgkagyvtnkgrqkvvpltdttnQktqlqaiylalqdsglevnivtdsqyalgiiqaqpdeseselvnqiieqlikkekvylawvpahkgiggneqvdklvsa/spietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaIkkkdstkwrklvDfrelnkrtqdfwevqlgipHpaglkkkksvtvldvgdayfSvpldedfrkytaftipsinnetpgiryqynvlpqgwkgspaIfqssmtkilepfrkqnpdiviyqymDDlyvgsdleigqhrtkieelrqhllrwglttpgyelhpdkwtvqpivlpekdswtvndiqklvgklnwasqiypGikvrqlckllrgtkalteviplteeaelelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyarmrgahtndvkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwipewefvntpplvklwyql >1run_A:cAMP-binding_domain-like;"Winged_helix"_DNA-binding_domain; title=CATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA COMPLEX + ADENOSINE-3',5'- CYCLIC-MONOPHOSPHATE organism=Escherichia coli DNA sequence DC(C-4):DG(F-4) DG(C-3):DC(F-3) DA(C-2):DT(F-2) DA(C-1):DT(F-1) DA(C1):DT(F1) DA(C2):DT(F2) DA(C3):DT(F3) DT(C4):DA(F4) DG(C5):DC(F5) DT(C6):DA(F6) DG(C7):DC(F7) DA(C8):DT(F8) DT(C9):DA(F9) chainA (171) SER179 0 0 0 0 0 0 0 0 0 0 0 1 1 (172) ARG180 0 0 0 0 0 0 0 10 16 2 0 0 0 (173) GLU181 0 0 0 0 0 0 0 0 1 6 6 9 0 (177) ARG185 0 0 0 0 0 0 0 0 0 8 14 6 0 prot.sequence ptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemilsylnqgdfigelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqmarrlqvtsekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrqeigqivgcSREtvgRilkmledqnlisahgktivvygtr >1ruo_A:cAMP-binding_domain-like;"Winged_helix"_DNA-binding_domain; title=CATABOLITE GENE ACTIVATOR PROTEIN (CAP) MUTANT/DNA COMPLEX + ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE organism=Escherichia coli DNA sequence DC(C-4):DG(F-4) DG(C-3):DC(F-3) DA(C-2):DT(F-2) DA(C-1):DT(F-1) DA(C1):DT(F1) DA(C2):DT(F2) DA(C3):DT(F3) DT(C4):DA(F4) DG(C5):DC(F5) DT(C6):DA(F6) DG(C7):DC(F7) DA(C8):DT(F8) DT(C9):DA(F9) chainA (162) GLN170 0 0 0 0 0 0 0 1 0 0 0 0 0 (171) SER179 0 0 0 0 0 0 0 0 0 0 0 1 0 (172) ARG180 0 0 0 0 0 0 0 9 13 1 0 0 0 (173) PHE181 0 0 0 0 0 0 0 0 9 19 20 8 0 (174) THR182 0 0 0 0 0 0 0 0 0 0 0 0 1 (177) ARG185 0 0 0 0 0 0 0 0 0 1 8 8 2 prot.sequence ptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemilsylnqgdfigelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqmarrlqvtsekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrQeigqivgcSRFTvgRilkmledqnlisahgktivvy >1rv5_A:Restriction_endonuclease-like; title=COMPLEX OF ECORV ENDONUCLEASE WITH D(AAAGAT)/D(ATCTT) organism=ESCHERICHIA COLI DNA sequence DA(C2):DT(D11) DA(C3):DT(D10) DG(C4):DC(D9) DA(C5):DT(D8) DT(C6):DA(D7) DA(C7):DT(D6) DT(C8):DA(D5) DC(C9):DG(D4) DT(C10):DA(D3) DT(C11):DA(D2) chainA ( 69) ASN70 0 0 0 1 0 0 0 0 0 0 (103) LYS104 0 0 0 0 0 0 0 0 2 0 (105) THR106 0 0 0 0 0 0 9 0 0 0 (178) SER183 0 0 0 0 0 0 5 4 0 0 (180) ASN185 0 0 0 0 0 0 12 16 0 0 (181) THR186 0 0 0 0 3 6 5 0 0 0 (183) ASN188 0 0 0 0 0 0 4 0 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytnkenekiKfTlggytsfirnntknivypfdqyiahwiigyvytrvsslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk >1rv5_AB: title=COMPLEX OF ECORV ENDONUCLEASE WITH D(AAAGAT)/D(ATCTT) organism=ESCHERICHIA COLI DNA sequence DA(C2):DT(D11) DA(C3):DT(D10) DG(C4):DC(D9) DA(C5):DT(D8) DT(C6):DA(D7) DA(C7):DT(D6) DT(C8):DA(D5) DC(C9):DG(D4) DT(C10):DA(D3) DT(C11):DA(D2) chainA ( 69) ASN70 0 0 0 1 0 0 0 0 0 0 (103) LYS104 0 0 0 0 0 0 0 0 2 0 (105) THR106 0 0 0 0 0 0 9 0 0 0 (178) SER183 0 0 0 0 0 0 5 4 0 0 (180) ASN185 0 0 0 0 0 0 12 16 0 0 (181) THR186 0 0 0 0 3 6 5 0 0 0 (183) ASN188 0 0 0 0 0 0 4 0 0 0 chainB ( 62) ASN70 0 0 0 0 0 1 7 4 0 0 ( 94) THR106 0 0 1 9 0 0 0 0 0 0 (165) SER183 0 0 4 5 0 0 0 0 0 0 (167) ASN185 0 0 19 10 0 0 0 0 0 0 (168) THR186 0 0 0 5 4 5 0 0 0 0 (170) ASN188 0 0 0 4 0 0 0 0 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytnkenekiKfTlggytsfirnntknivypfdqyiahwiigyvytrvsslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk/slrsdlinaldvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytnkikfTlggytsfirnntknivypfdqyiahwiigyvytrvlktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk >1rva_AB: title=MG2+ BINDING TO THE ACTIVE SITE OF ECO RV ENDONUCLEASE: A CRYSTALLOGRAPHIC STUDY OF COMPLEXES WITH SUBSTRATE AND PRODUCT DNA AT 2 ANGSTROMS RESOLUTION organism=Escherichia coli DNA sequence DA(C2):DT(D11) DA(C3):DT(D10) DG(C4):DC(D9) DA(C5):DT(D8) DT(C6):DA(D7) DA(C7):DT(D6) DT(C8):DA(D5) DC(C9):DG(D4) DT(C10):DA(D3) DT(C11):DA(D2) chainA ( 69) ASN70 0 0 3 4 3 0 0 0 0 0 (103) LYS104 0 0 0 0 0 0 0 0 1 0 (105) THR106 0 0 0 0 0 0 9 0 0 0 (182) SER183 0 0 0 0 0 0 6 3 0 0 (184) ASN185 0 0 0 0 0 0 10 17 0 0 (185) THR186 0 0 0 0 5 3 9 0 0 0 (187) ASN188 0 0 0 0 0 0 4 0 0 0 chainB ( 37) LYS38 0 0 0 0 0 3 0 0 0 0 ( 69) ASN70 0 0 0 0 0 1 4 4 0 0 (105) THR106 0 0 0 9 0 0 0 0 0 0 (182) SER183 0 0 2 7 0 0 0 0 0 0 (184) ASN185 0 0 18 11 0 0 0 0 0 0 (185) THR186 0 0 0 9 3 5 0 0 0 0 (187) ASN188 0 0 0 4 0 0 0 0 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytnkenekiKfTlggytsfirnntknivypfdqyiahwiigyvytrvatrksslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk/slrsdlinalydenqkydvcgiisaegkiyplgsdtKvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytnkenekikfTlggytsfirnntknivypfdqyiahwiigyvytrvatrksslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk >1rva_B:Restriction_endonuclease-like; title=MG2+ BINDING TO THE ACTIVE SITE OF ECO RV ENDONUCLEASE: A CRYSTALLOGRAPHIC STUDY OF COMPLEXES WITH SUBSTRATE AND PRODUCT DNA AT 2 ANGSTROMS RESOLUTION organism=Escherichia coli DNA sequence DA(D2):DT(C11) DA(D3):DT(C10) DG(D4):DC(C9) DA(D5):DT(C8) DT(D6):DA(C7) DA(D7):DT(C6) DT(D8):DA(C5) DC(D9):DG(C4) DT(D10):DA(C3) DT(D11):DA(C2) chainB ( 37) LYS38 0 0 0 0 3 0 0 0 0 0 ( 69) ASN70 0 0 4 4 1 0 0 0 0 0 (105) THR106 0 0 0 0 0 0 9 0 0 0 (182) SER183 0 0 0 0 0 0 7 2 0 0 (184) ASN185 0 0 0 0 0 0 11 18 0 0 (185) THR186 0 0 0 0 5 3 9 0 0 0 (187) ASN188 0 0 0 0 0 0 4 0 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtKvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytnkenekikfTlggytsfirnntkNivypfdqyiahwiigyvytrvatrksslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk >1rvb_A:Restriction_endonuclease-like; title=MG2+ BINDING TO THE ACTIVE SITE OF ECO RV ENDONUCLEASE: A CRYSTALLOGRAPHIC STUDY OF COMPLEXES WITH SUBSTRATE AND PRODUCT DNA AT 2 ANGSTROMS RESOLUTION organism=Escherichia coli DNA sequence DA(D2):DT(C11) DA(D3):DT(C10) DG(D4):DC(C9) DA(D5):DT(C8) DT(D6):DA(C7) DA(D7):DT(C6) DT(D8):DA(C5) DC(D9):DG(C4) DT(D10):DA(C3) DT(D11):DA(C2) chainA ( 69) ASN70 0 0 0 0 0 3 7 5 0 0 (103) LYS104 0 1 0 0 0 0 0 0 0 0 (105) THR106 0 0 1 9 0 0 0 0 0 0 (182) SER183 0 0 4 6 0 0 0 0 0 0 (184) ASN185 0 0 17 10 0 0 0 0 0 0 (185) THR186 0 0 0 9 4 5 0 0 0 0 (187) ASN188 0 0 0 4 0 0 0 0 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytnkenekiKfTlggytsfirnntknivypfdqyiahwiigyvytrvatrksslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk >1rvb_AB: title=MG2+ BINDING TO THE ACTIVE SITE OF ECO RV ENDONUCLEASE: A CRYSTALLOGRAPHIC STUDY OF COMPLEXES WITH SUBSTRATE AND PRODUCT DNA AT 2 ANGSTROMS RESOLUTION organism=Escherichia coli DNA sequence DA(D2):DT(C11) DA(D3):DT(C10) DG(D4):DC(C9) DA(D5):DT(C8) DT(D6):DA(C7) DA(D7):DT(C6) DT(D8):DA(C5) DC(D9):DG(C4) DT(D10):DA(C3) DT(D11):DA(C2) chainA ( 69) ASN70 0 0 0 0 0 3 7 5 0 0 (103) LYS104 0 1 0 0 0 0 0 0 0 0 (105) THR106 0 0 1 9 0 0 0 0 0 0 (182) SER183 0 0 4 6 0 0 0 0 0 0 (184) ASN185 0 0 17 10 0 0 0 0 0 0 (185) THR186 0 0 0 9 4 5 0 0 0 0 (187) ASN188 0 0 0 4 0 0 0 0 0 0 chainB ( 69) ASN70 0 0 4 4 1 0 0 0 0 0 (105) THR106 0 0 0 0 0 0 10 1 0 0 (182) SER183 0 0 0 0 0 0 6 4 0 0 (184) ASN185 0 0 0 0 0 0 10 18 0 0 (185) THR186 0 0 0 0 5 3 9 0 0 0 (187) ASN188 0 0 0 0 0 0 4 0 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytnkenekiKfTlggytsfirnntknivypfdqyiahwiigyvytrvatrksslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk/slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidikttytnkenekikfTlggytsfirnntknivypfdqyiahwiigyvytrvatrksslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk >1rxw_A:PIN_domain-like;5'_to_3'_exonuclease,_C-terminal_subdomain; title=CRYSTAL STRUCTURE OF A. FULGIDUS FEN-1 BOUND TO DNA organism=Archaeoglobus fulgidus DNA sequence DA(C8):DT(B9) DG(C7):DC(B10) DC(C6):DG(B11) DA(C5):DT(B12) DT(C4):DA(B13) DC(C3):DG(B14) DG(C2):DC(B15) chainA ( 36) ILE38 0 0 0 0 0 0 3 ( 37) ILE39 0 0 0 0 0 0 16 ( 45) LEU47 0 0 0 0 0 0 15 ( 57) SER59 0 0 0 0 0 0 1 (295) ARG314 0 0 0 0 0 2 0 prot.sequence adigdlfereeveleyfsgkkiavdafntlyqfisIIrqpdgtpLkdsqgritshlSgilyrvsnmvevgirpvfvfdgeppefkkaeieerkkrraeaeemwiaalqagdkdakkyaqaagrvdeyivdsaktllsymgipfvdapsegeaqaaymaakgdveytgsqdydsllfgsprlarnlaidvkpeiiilesnlkrlgltreqlidiailvgtdynegvkgvgvkkalnyiktygdifralkalkvveeirnfflnppvtddyriefrepdfekaieflceehdfsreRvekaleklka >1ryr_A:DNA/RNA_polymerases;Lesion_bypass_DNA_polymerase_Y-family,_little_finger_domain; title=REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION organism=Sulfolobus solfataricus DNA sequence DG(B1801):DC(C1918) DG(B1802):DC(C1917) DG(B1803):DC(C1916) DG(B1804):DC(C1915) DG(B1805):DC(C1914) DA(B1806):DT(C1913) DA(B1807):DT(C1912) DG(B1808):DC(C1911) DG(B1809):DC(C1910) DA(B1810):DT(C1909) DT(B1811):DA(C1908) DT(B1812):DA(C1907) DC(B1813):DG(C1906) ATP(A1814):DT(C1905) chainA ( 7) ASP7 0 0 0 0 0 0 0 0 0 0 0 0 0 3 ( 10) TYR10 0 0 0 0 0 0 0 0 0 0 0 0 0 2 ( 11) PHE11 0 0 0 0 0 0 0 0 0 0 0 0 0 1 ( 42) ALA42 0 0 0 0 0 0 0 0 0 0 0 0 0 4 ( 45) THR45 0 0 0 0 0 0 0 0 0 0 0 0 0 4 ( 51) ARG51 0 0 0 0 0 0 0 0 0 0 0 0 0 8 ( 57) ALA57 0 0 0 0 0 0 0 0 0 0 0 0 0 2 (105) ASP105 0 0 0 0 0 0 0 0 0 0 0 0 0 3 (159) LYS159 0 0 0 0 0 0 0 0 0 0 0 0 0 5 (244) SER244 0 0 0 0 0 0 0 0 0 1 0 0 0 0 (336) ARG336 0 0 0 0 0 0 0 0 0 2 4 0 0 0 prot.sequence mivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgAvatanyearkfgvkagipiveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyreaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldiadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtrvrkSigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgrtfphgisketaysesvkllqkileederkirrigvRfsKfi >1rys_B:DNA/RNA_polymerases;Lesion_bypass_DNA_polymerase_Y-family,_little_finger_domain; title=REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION organism=Sulfolobus solfataricus DNA sequence DG(E1802):DC(F1917) DG(E1803):DC(F1916) DG(E1804):DC(F1915) DG(E1805):DC(F1914) DA(E1806):DT(F1913) DA(E1807):DT(F1912) DG(E1808):DC(F1911) DG(E1809):DC(F1910) DA(E1810):DT(F1909) DT(E1811):DA(F1908) DT(E1812):DA(F1907) DC(E1813):DG(F1906) DA(E1814):DT(F1905) ATP(B1815):DT(F1904) chainB ( 7) ASP7 0 0 0 0 0 0 0 0 0 0 0 0 0 3 ( 10) TYR10 0 0 0 0 0 0 0 0 0 0 0 0 0 2 ( 11) PHE11 0 0 0 0 0 0 0 0 0 0 0 0 0 1 ( 32) VAL32 0 0 0 0 0 0 0 0 0 0 0 0 0 3 ( 45) THR45 0 0 0 0 0 0 0 0 0 0 0 0 0 5 ( 48) TYR48 0 0 0 0 0 0 0 0 0 0 0 0 0 5 ( 51) ARG51 0 0 0 0 0 0 0 0 0 0 0 0 0 10 ( 57) ALA57 0 0 0 0 0 0 0 0 0 0 0 0 0 8 (105) ASP105 0 0 0 0 0 0 0 0 0 0 0 0 0 4 (159) LYS159 0 0 0 0 0 0 0 0 0 0 0 0 0 7 (295) ILE295 0 0 0 0 0 0 0 0 0 1 0 0 0 0 (332) ARG332 0 0 0 0 0 0 0 0 0 0 0 0 1 0 (336) ARG336 0 0 0 0 0 0 0 0 0 0 4 0 0 0 prot.sequence mivlfvdfdyfyaqveevlnpslkgkpvvvcVfsgrfedsgavatanyearkfgvkagipiveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyreaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldiadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtrvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldIvsrgrtfphgisketaysesvkllqkileederkirRigvRfskfi >1rz9_ABCDE:Origin_of_replication-binding_domain,_RBD-like; title=CRYSTAL STRUCTURE OF AAV REP COMPLEXED WITH THE REP-BINDING SEQUENCE organism=Adeno-associated virus - 5 DNA sequence DC(F1):DG(G26) DG(F2):DC(G25) DC(F3):DG(G24) DG(F4):DC(G23) DT(F5):DA(G22) DT(F6):DA(G21) DC(F7):DG(G20) DG(F8):DC(G19) DC(F9):DG(G18) DT(F10):DA(G17) DC(F11):DG(G16) DG(F12):DC(G15) DC(F13):DG(G14) DT(F14):DA(G13) DC(F15):DG(G12) DG(F16):DC(G11) DC(F17):DG(G10) DT(F18):DA(G9) DG(F19):DC(G8) DG(F20):DC(G7) DC(F21):DG(G6) DT(F22):DA(G5) DC(F23):DG(G4) DG(F24):DC(G3) DT(F25):DA(G2) DG(F26):DC(G1) chainA (102) MET102 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 (106) ARG106 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 12 6 0 0 (137) LYS137 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 6 3 0 0 0 0 0 0 0 0 0 (138) LYS138 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 chainB (102) MET102 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 (106) ARG106 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 8 7 0 0 0 0 0 0 (137) LYS137 0 0 0 0 0 0 0 0 0 0 3 8 2 0 0 0 0 0 0 0 0 0 0 0 0 0 (138) LYS138 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 chainC (102) MET102 0 0 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 (106) ARG106 0 0 0 0 0 0 0 0 0 0 0 0 0 4 5 2 0 0 0 0 0 0 0 0 0 0 (137) LYS137 0 0 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (138) LYS138 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainD (102) MET102 0 0 0 0 0 0 0 1 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (106) ARG106 0 0 0 0 0 0 0 0 0 4 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (137) LYS137 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (138) LYS138 0 0 0 6 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainE (102) MET102 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (106) ARG106 0 0 0 0 0 2 8 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (137) LYS137 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence matfyevivrvpfdveehlpgisdsfvdwvtgqiwelppesdlnltlveqpqltvadrirrvflyewnkfskqeskffvqfekgseyfhlhtlvetsgissMvlgRyvsqiraqlvkvvfqgiepqindwvaitkvKKggankvvdsgyipayllpkvqpelqwawtnldeyklaalnleerkrlvaqflaes/matfyevivrvpfdveehlpgisdsfvdwvtgqiwelppesdlnltlveqpqltvadrirrvflyewnkfskqeskffvqfekgseyfhlhtlvetsgissMvlgRyvsqiraqlvkvvfqgiepqindwvaitkvKKggankvvdsgyipayllpkvqpelqwawtnldeyklaalnleerkrlvaqflaes/matfyevivrvpfdveehlpgisdsfvdwvtgqiwelppesdlnltlveqpqltvadrirrvflyewnkfskqeskffvqfekgseyfhlhtlvetsgissMvlgRyvsqiraqlvkvvfqgiepqindwvaitkvKKggankvvdsgyipayllpkvqpelqwawtnldeyklaalnleerkrlvaqflaes/matfyevivrvpfdveehlpgisdsfvdwvtgqiwelppesdlnltlveqpqltvadrirrvflyewnkfskqeskffvqfekgseyfhlhtlvetsgissMvlgRyvsqiraqlvkvvfqgiepqindwvaitkvKKggankvvdsgyipayllpkvqpelqwawtnldeyklaalnleerkrlvaqflaes/matfyevivrvpfdveehlpgisdsfvdwvtgqiwelppesdlnltlveqpqltvadrirrvflyewnkfskqeskffvqfekgseyfhlhtlvetsgissMvlgRyvsqiraqlvkvvfqgiepqindwvaitkvKkggankvvdsgyipayllpkvqpelqwawtnldeyklaalnleerkrlvaqflaes >1rz9_B:Origin_of_replication-binding_domain,_RBD-like; title=CRYSTAL STRUCTURE OF AAV REP COMPLEXED WITH THE REP-BINDING SEQUENCE organism=Adeno-associated virus - 5 DNA sequence DC(G1):DG(F26) DA(G2):DT(F25) DC(G3):DG(F24) DG(G4):DC(F23) DA(G5):DT(F22) DG(G6):DC(F21) DC(G7):DG(F20) DC(G8):DG(F19) DA(G9):DT(F18) DG(G10):DC(F17) DC(G11):DG(F16) DG(G12):DC(F15) DA(G13):DT(F14) DG(G14):DC(F13) DC(G15):DG(F12) DG(G16):DC(F11) DA(G17):DT(F10) DG(G18):DC(F9) DC(G19):DG(F8) DG(G20):DC(F7) DA(G21):DT(F6) DA(G22):DT(F5) DC(G23):DG(F4) DG(G24):DC(F3) DC(G25):DG(F2) DG(G26):DC(F1) chainB (102) MET102 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (106) ARG106 0 0 0 0 0 0 7 8 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (137) LYS137 0 0 0 0 0 0 0 0 0 0 0 0 0 2 8 3 0 0 0 0 0 0 0 0 0 0 (138) LYS138 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence matfyevivrvpfdveehlpgisdsfvdwvtgqiwelppesdlnltlveqpqltvadrirrvflyewnkfskqeskffvqfekgseyfhlhtlvetsgissMvlgRyvsqiraqlvkvvfqgiepqindwvaitkvKKggankvvdsgyipayllpkvqpelqwawtnldeyklaalnleerkrlvaqflaes >1rzr_AD: title=CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR-PHOSPHOPROTEIN-DNA COMPLEX organism=BACILLUS MEGATERIUM DNA sequence DC(E700):DG(B715) DT(E701):DA(B714) DG(E702):DC(B713) DA(E703):DT(B712) DA(E704):DT(B711) DA(E705):DT(B710) DG(E706):DC(B709) DC(E707):DG(B708) DG(E708):DC(B707) DC(E709):DG(B706) DT(E710):DA(B705) DA(E711):DT(B704) DA(E712):DT(B703) DC(E713):DG(B702) DA(E714):DT(B701) DG(E715):DC(B700) chainA ( 5) ILE5 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 ( 15) SER15 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 16) MET16 0 0 0 0 0 5 3 0 0 0 0 0 0 0 0 0 ( 17) ALA17 0 0 2 3 0 0 0 0 0 0 0 0 0 0 0 0 ( 20) SER20 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 ( 21) ARG21 0 14 12 5 1 0 0 0 0 0 0 0 0 0 0 0 ( 52) ALA52 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 ( 55) LEU55 0 0 0 0 0 0 0 12 3 0 0 0 0 0 0 0 ( 56) ALA56 0 0 0 0 0 0 3 2 0 0 0 0 0 0 0 0 chainD ( 5) ILE5 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 ( 15) SER15 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 ( 16) MET16 0 0 0 0 0 0 0 0 0 4 6 0 0 0 0 0 ( 17) ALA17 0 0 0 0 0 0 0 0 0 0 0 0 4 4 0 0 ( 20) SER20 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 21) ARG21 0 0 0 0 0 0 0 0 0 0 0 0 1 14 16 0 ( 52) ALA52 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 ( 55) LEU55 0 0 0 0 0 0 0 4 12 0 0 0 0 0 0 0 ( 56) ALA56 0 0 0 0 0 0 0 0 3 3 0 0 0 0 0 0 prot.sequence mnvtIydvareasvSMAtvSRvvngnpnvkpstrkkvletierlgyrpnavArgLAskktttvgviipdisnifyaelargiediatmykyniilsnsdqnqdkelhllnnmlgkqvdgiifmsgnvteehveelkkspvpvvlaasiestnqipsvtidyeqaafdavqslidsghkniafvsgtleepinhakkvkgykraltesglpvrdsyivegdytydsgieaveklleedekptaifvgtdemalgvihgaqdrglnvpndleiigfdntrlstmvrpqltsvvqpmydigavamrlltkymnketvdssivqlphriefrqstk/mnvtIydvareasvSMAtvSRvvngnpnvkpstrkkvletierlgyrpnavArgLAskktttvgviipdisnifyaelargiediatmykyniilsnsdqnqdkelhllnnmlgkqvdgiifmsgnvteehveelkkspvpvvlaasiestnqipsvtidyeqaafdavqslidsghkniafvsgtleepinhakkvkgykraltesglpvrdsyivegdytydsgieaveklleedekptaifvgtdemalgvihgaqdrglnvpndleiigfdntrlstmvrpqltsvvqpmydigavamrlltkymnketvdssivqlphriefrqstk >1rzr_CG: title=CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR-PHOSPHOPROTEIN-DNA COMPLEX organism=BACILLUS MEGATERIUM DNA sequence DC(H700):DG(R715) DT(H701):DA(R714) DG(H702):DC(R713) DA(H703):DT(R712) DA(H704):DT(R711) DA(H705):DT(R710) DG(H706):DC(R709) DC(H707):DG(R708) DG(H708):DC(R707) DC(H709):DG(R706) DT(H710):DA(R705) DA(H711):DT(R704) DA(H712):DT(R703) DC(H713):DG(R702) DA(H714):DT(R701) DG(H715):DC(R700) chainG ( 5) ILE5 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 ( 15) SER15 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 16) MET16 0 0 0 0 0 3 4 0 0 0 0 0 0 0 0 0 ( 17) ALA17 0 0 2 3 3 0 0 0 0 0 0 0 0 0 0 0 ( 20) SER20 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 ( 21) ARG21 0 19 9 1 0 0 0 0 0 0 0 0 0 0 0 0 ( 52) ALA52 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 ( 55) LEU55 0 0 0 0 0 0 0 11 5 0 0 0 0 0 0 0 ( 56) ALA56 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 chainC ( 5) ILE5 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 ( 15) SER15 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 ( 16) MET16 0 0 0 0 0 0 0 0 0 3 3 0 0 0 0 0 ( 17) ALA17 0 0 0 0 0 0 0 0 0 0 0 1 5 3 0 0 ( 18) THR18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 ( 20) SER20 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 ( 21) ARG21 0 0 0 0 0 0 0 0 0 0 0 0 0 9 33 0 ( 29) VAL29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 ( 52) ALA52 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 ( 55) LEU55 0 0 0 0 0 0 0 5 11 0 0 0 0 0 0 0 ( 56) ALA56 0 0 0 0 0 0 0 0 2 3 0 0 0 0 0 0 prot.sequence mnvtIydvareasvSMATvSRvvngnpnVkpstrkkvletierlgyrpnavArgLAskktttvgviipdisnifyaelargiediatmykyniilsnsdqnqdkelhllnnmlgkqvdgiifmsgnvteehveelkkspvpvvlaasiestnqipsvtidyeqaafdavqslidsghkniafvsgtleepinhakkvkgykraltesglpvrdsyivegdytydsgieaveklleedekptaifvgtdemalgvihgaqdrglnvpndleiigfdntrlstmvrpqltsvvqpmydigavamrlltkymnketvdssivqlphriefrqstk/mnvtIydvareasvSMAtvSRvvngnpnvkpstrkkvletierlgyrpnavArgLAskktttvgviipdisnifyaelargiediatmykyniilsnsdqnqdkelhllnnmlgkqvdgiifmsgnvteehveelkkspvpvvlaasiestnqipsvtidyeqaafdavqslidsghkniafvsgtleepinhakkvkgykraltesglpvrdsyivegdytydsgieaveklleedekptaifvgtdemalgvihgaqdrglnvpndleiigfdntrlstmvrpqltsvvqpmydigavamrlltkymnketvdssivqlphriefrqstk >1rzr_D:Periplasmic_binding_protein-like_I;lambda_repressor-like_DNA-binding_domains; title=CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR-PHOSPHOPROTEIN-DNA COMPLEX organism=? DNA sequence DC(B700):DG(E715) DT(B701):DA(E714) DG(B702):DC(E713) DT(B703):DA(E712) DT(B704):DA(E711) DA(B705):DT(E710) DG(B706):DC(E709) DC(B707):DG(E708) DG(B708):DC(E707) DC(B709):DG(E706) DT(B710):DA(E705) DT(B711):DA(E704) DT(B712):DA(E703) DC(B713):DG(E702) DA(B714):DT(E701) DG(B715):DC(E700) chainD ( 5) ILE5 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 ( 15) SER15 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 ( 16) MET16 0 0 0 0 0 6 4 0 0 0 0 0 0 0 0 0 ( 17) ALA17 0 0 4 4 0 0 0 0 0 0 0 0 0 0 0 0 ( 20) SER20 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 ( 21) ARG21 0 16 14 1 0 0 0 0 0 0 0 0 0 0 0 0 ( 52) ALA52 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 ( 55) LEU55 0 0 0 0 0 0 0 12 4 0 0 0 0 0 0 0 ( 56) ALA56 0 0 0 0 0 0 3 3 0 0 0 0 0 0 0 0 prot.sequence mnvtIydvareasvSMAtvSRvvngnpnvkpstrkkvletierlgyrpnavArgLAskktttvgviipdisnifyaelargiediatmykyniilsnsdqnqdkelhllnnmlgkqvdgiifmsgnvteehveelkkspvpvvlaasiestnqipsvtidyeqaafdavqslidsghkniafvsgtleepinhakkvkgykraltesglpvrdsyivegdytydsgieaveklleedekptaifvgtdemalgvihgaqdrglnvpndleiigfdntrlstmvrpqltsvvqpmydigavamrlltkymnketvdssivqlphriefrqstk >1s0m_B:DNA/RNA_polymerases;Lesion_bypass_DNA_polymerase_Y-family,_little_finger_domain; title=CRYSTAL STRUCTURE OF A BENZO[A]PYRENE DIOL EPOXIDE ADDUCT IN A TERNARY COMPLEX WITH A DNA POLYMERASE organism=Sulfolobus solfataricus DNA sequence DG(E1801):DC(F1918) DG(E1802):DC(F1917) DG(E1803):DC(F1916) DG(E1804):DC(F1915) DG(E1805):DC(F1914) DA(E1806):DT(F1913) DA(E1807):DT(F1912) DG(E1808):DC(F1911) DG(E1809):DC(F1910) DA(E1810):DT(F1909) DT(E1811):DA(F1908) DT(E1812):DA(F1907) DT(E1813):DA(F1906) chainB (244) SER244 0 0 0 0 0 0 0 0 0 1 0 0 0 (332) ARG332 0 0 0 0 0 0 0 0 0 0 0 0 7 (336) ARG336 0 0 0 0 0 0 0 0 0 1 2 0 0 prot.sequence mivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagipiveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyreaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldiadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtrvrkSigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgrtfphgisketaysesvkllqkileederkirRigvRfskfi >1s0n_A:DNA/RNA_polymerases;Lesion_bypass_DNA_polymerase_Y-family,_little_finger_domain; title=SNAPSHOTS OF REPLICATION THROUGH AN ABASIC LESION: STRUCTURAL BASIS FOR BASE SUBSTITUTION AND FRAMESHIFT organism=Sulfolobus solfataricus DNA sequence DC(T6):DG(P13) DG(T7):DC(P12) DT(T8):DA(P11) DG(T9):DC(P10) DA(T10):DT(P9) DT(T11):DA(P8) DC(T12):DG(P7) DA(T13):DT(P6) DG(T14):DC(P5) DT(T15):DA(P4) DG(T16):DC(P3) DC(T17):DG(P2) DC(T18):DG(P1) chainA (332) ARG332 2 0 0 0 0 0 0 0 0 0 0 0 0 (336) ARG336 0 0 1 0 0 0 0 0 0 0 0 0 0 prot.sequence mivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagipiveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyreaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldiadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtrvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgrtfphgisketaysesvkllqkileederkirRigvRfskfi >1s0o_B:DNA/RNA_polymerases;Lesion_bypass_DNA_polymerase_Y-family,_little_finger_domain; title=SNAPSHOTS OF REPLICATION THROUGH AN ABASIC LESION: STRUCTURAL BASIS FOR BASE SUBSTITUTION AND FRAMESHIFT organism=Sulfolobus solfataricus DNA sequence DG(E1801):DC(F1918) DG(E1802):DC(F1917) DG(E1803):DC(F1916) DG(E1804):DC(F1915) DG(E1805):DC(F1914) DA(E1806):DT(F1913) DA(E1807):DT(F1912) DG(E1808):DC(F1911) DG(E1809):DC(F1910) DA(E1810):DT(F1909) DC(E1811):DG(F1908) DT(E1812):DA(F1907) DC(E1813):DG(F1905) TTP(B804):DA(F1904) chainB ( 7) ASP7 0 0 0 0 0 0 0 0 0 0 0 0 0 6 ( 9) ASP9 0 0 0 0 0 0 0 0 0 0 0 0 0 2 ( 10) TYR10 0 0 0 0 0 0 0 0 0 0 0 0 0 2 ( 11) PHE11 0 0 0 0 0 0 0 0 0 0 0 0 0 1 ( 12) TYR12 0 0 0 0 0 0 0 0 0 0 0 0 0 1 ( 32) VAL32 0 0 0 0 0 0 0 0 0 0 0 0 0 6 ( 42) ALA42 0 0 0 0 0 0 0 0 0 0 0 0 0 5 ( 44) ALA44 0 0 0 0 0 0 0 0 0 0 0 0 0 3 ( 45) THR45 0 0 0 0 0 0 0 0 0 0 0 0 0 4 ( 48) TYR48 0 0 0 0 0 0 0 0 0 0 0 0 0 6 ( 51) ARG51 0 0 0 0 0 0 0 0 0 0 0 0 0 10 ( 57) ALA57 0 0 0 0 0 0 0 0 0 0 0 0 0 4 ( 76) MET76 0 0 0 0 0 0 0 0 0 0 0 0 0 1 (105) ASP105 0 0 0 0 0 0 0 0 0 0 0 0 0 5 (106) GLU106 0 0 0 0 0 0 0 0 0 0 0 0 0 1 (159) LYS159 0 0 0 0 0 0 0 0 0 0 0 0 0 8 (332) ARG332 0 0 0 0 0 0 0 0 0 0 0 0 2 0 (336) ARG336 0 0 0 0 0 0 0 0 0 5 10 0 0 0 prot.sequence mivlfvdfdyfyaqveevlnpslkgkpvvvcVfsgrfedsgAvAtanyearkfgvkagipiveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyreaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldiadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtrvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgrtfphgisketaysesvkllqkileederkirRigvRfskfi >1s0v_A:DNA/RNA_polymerases; title=STRUCTURAL BASIS FOR SUBSTRATE SELECTION BY T7 RNA POLYMERASE organism=ENTEROBACTERIA PHAGE T7 DNA sequence DG(E2):DC(G9) DG(E3):DC(G8) DA(E4):DT(G7) DA(E5):DT(G6) DT(E6):DA(G5) DC(E7):DG(G4) DG(E8):DC(G3) DA(E9):DT(G2) DT(E10):DG(G1) chainA (622) TYR639 0 0 0 0 0 0 0 0 1 (627) PHE644 0 0 0 0 0 0 0 50 3 (632) GLN649 0 0 0 0 0 0 0 0 11 prot.sequence ntiniakndfsdielaaipfntladhygerlareqlalehesyemgearfrkmferqlkagevadnaaakplittllpkmiarindwfeevkakrgkrptafqflqeikpeavayitikttlacltsadnttvqavasaigraiedearfgrirdleakhfkknveeqlnkrvghvykkafmqvveadmlskgllggeawsswhkedsihvgvrciemliestgmvslhrqnagvvgqdsetielapeyaeaiatragalagispmfqpcvvppkpwtgitgggywangrrplalvrthskkalmryedvympevykainiaqntawkinkkvlavanvitkwkhcpvedipaiealtawkraaaavyrkdkarksrrislefmleqankfanhkaiwfpynmdwrgrvyavsmfnpqgndmtkglltlakgkpigkegyywlkihgancagvdkvpfperikfieenhenimacaksplentwwaeqdspfcflafcfeyagvqhhglsyncslplafdgscsgiqhfsamlrdevggravnllpsetvqdiygivakkvneilqadaingtdnevvtvtdentgeisekvklgtkalagqwlaygvtrsvtkrsvmtlaYgskeFgfRqQvleDtiqpaidsgkglmftqpnqaagymakliwesvsvtvvaaveamnwlksaakllaaevkdkktgeilrkrcavhwvtpdgfpvwqeykkpiqtrlnlmflgqfrdseidahkqesgiapnfvhsqdgshlrktvvwahekygiesfalihdsfgtipadaanlfkavretmvdtyescdvladfydqfadqlhesqldkmpalpakgnlnlrdilesdfafa >1s10_A:DNA/RNA_polymerases;Lesion_bypass_DNA_polymerase_Y-family,_little_finger_domain; title=SNAPSHOTS OF REPLICATION THROUGH AN ABASIC LESION: STRUCTURAL BASIS FOR BASE SUBSTITUTION AND FRAMESHIFT organism=Sulfolobus solfataricus DNA sequence DT(C1906):DA(B1813) DA(C1907):DT(B1812) DG(C1908):DC(B1811) DT(C1909):DA(B1810) DC(C1910):DG(B1809) DC(C1911):DG(B1808) DT(C1912):DA(B1807) DT(C1913):DA(B1806) DC(C1914):DG(B1805) DC(C1915):DG(B1804) DC(C1916):DG(B1803) DC(C1917):DG(B1802) DC(C1918):DG(B1801) chainA (336) ARG336 0 0 1 0 0 0 0 0 0 0 0 0 0 prot.sequence mivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagipiveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyreaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldiadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtrvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivSrgrtfphgisketaysesvkllqkileederkirrigvRfskfi >1s32_ABCDEFGH:Histone-fold;lambda_repressor-like_DNA-binding_domains;p53-like_transcription_factors;Nucleic_acid-binding_proteins;P-loop_containing_nucleoside_triphosphate_hydrolases; title=MOLECULAR RECOGNITION OF THE NUCLEOSOMAL 'SUPERGROOVE' organism=XENOPUS LAEVIS DNA sequence DA(J147):DT(I146) DT(J148):DA(I145) DC(J149):DG(I144) DA(J150):DT(I143) DA(J151):DT(I142) DT(J152):DA(I141) DA(J153):DT(I140) DT(J154):DA(I139) DC(J155):DG(I138) DC(J156):DG(I137) DA(J157):DT(I136) DC(J158):DG(I135) DC(J159):DG(I134) DT(J160):DA(I133) DG(J161):DC(I132) DC(J162):DG(I131) DA(J163):DT(I130) DG(J164):DC(I129) DA(J165):DT(I128) DT(J166):DA(I127) DT(J167):DA(I126) DC(J168):DG(I125) DT(J169):DA(I124) DA(J170):DT(I123) DC(J171):DG(I122) DC(J172):DG(I121) DA(J173):DT(I120) DA(J175):DT(I118) DA(J176):DT(I117) DG(J177):DC(I116) DT(J178):DA(I115) DG(J179):DC(I114) DT(J180):DA(I113) DA(J181):DT(I112) DT(J182):DA(I111) DT(J183):DA(I110) DT(J184):DA(I109) DG(J185):DC(I108) DG(J186):DC(I107) DA(J187):DT(I106) DA(J188):DT(I105) DA(J189):DT(I104) DC(J190):DG(I103) DT(J191):DA(I102) DG(J192):DC(I101) DC(J193):DG(I100) DT(J194):DA(I99) DC(J195):DG(I98) DC(J196):DG(I97) DA(J197):DT(I96) DT(J198):DA(I95) DC(J199):DG(I94) DA(J200):DT(I93) DA(J201):DT(I92) DA(J202):DT(I91) DA(J203):DT(I90) DG(J204):DC(I89) DG(J205):DC(I88) DC(J206):DG(I87) DA(J207):DT(I86) DT(J208):DA(I85) DG(J209):DC(I84) DT(J210):DA(I83) DT(J211):DA(I82) DC(J212):DG(I81) DA(J213):DT(I80) DG(J214):DC(I79) DC(J215):DG(I78) DG(J216):DC(I77) DG(J217):DC(I76) DA(J218):DT(I75) DA(J219):DT(I74) DT(J220):DA(I73) DT(J221):DA(I72) DC(J222):DG(I71) DC(J223):DG(I70) DG(J224):DC(I69) DC(J225):DG(I68) DT(J226):DA(I67) DG(J227):DC(I66) DA(J228):DT(I65) DA(J229):DT(I64) DC(J230):DG(I63) DA(J231):DT(I62) DT(J232):DA(I61) DG(J233):DC(I60) DC(J234):DG(I59) DC(J235):DG(I58) DT(J236):DA(I57) DT(J237):DA(I56) DT(J238):DA(I55) DT(J239):DA(I54) DG(J240):DC(I53) DA(J241):DT(I52) DT(J242):DA(I51) DG(J243):DC(I50) DG(J244):DC(I49) DA(J245):DT(I48) DG(J246):DC(I47) DC(J247):DG(I46) DA(J248):DT(I45) DG(J249):DC(I44) DT(J250):DA(I43) DT(J251):DA(I42) DT(J252):DA(I41) DC(J253):DG(I40) DC(J254):DG(I39) DA(J255):DT(I38) DA(J256):DT(I37) DA(J257):DT(I36) DT(J258):DA(I35) DA(J259):DT(I34) DC(J260):DG(I33) DA(J261):DT(I32) DC(J262):DG(I31) DT(J263):DA(I30) DT(J264):DA(I29) DT(J265):DA(I28) DT(J266):DA(I27) DG(J267):DC(I26) DG(J268):DC(I25) DT(J269):DA(I24) DA(J270):DT(I23) DG(J271):DC(I22) DA(J272):DT(I21) DA(J273):DT(I20) DT(J274):DA(I19) DC(J275):DG(I18) DT(J276):DA(I17) DG(J277):DC(I16) DC(J278):DG(I15) DA(J279):DT(I14) DG(J280):DC(I13) DG(J281):DC(I12) DT(J282):DA(I11) DG(J283):DC(I10) DG(J284):DC(I9) DA(J285):DT(I8) DT(J286):DA(I7) DA(J287):DT(I6) DT(J288):DA(I5) DT(J289):DA(I4) DG(J290):DC(I3) DA(J291):DT(I2) DT(J292):DA(I1) chainA ( 3) ARG440 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 4) TYR441 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) LEU465 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) ARG483 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 24) ARG45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainC chainD ( 5) ARG1226 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 4 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 9) ARG1230 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainE ( 4) ARG640 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 5) TYR641 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 29) LEU665 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 47) ARG683 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainF ( 18) PRO232 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 31) ARG245 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainG chainH ( 2) ARG1426 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 3 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 6) ARG1430 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence pHRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera/lrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/akaktrssraglqfpvgrvhrllRkgnyaervgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpk/dgkkRrktRkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak/kpHRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera/akrhrkvlrdniqgitkPairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/kaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaardnkktRiiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk/kRrktRkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak >1s32_D:Histone-fold; title=MOLECULAR RECOGNITION OF THE NUCLEOSOMAL 'SUPERGROOVE' organism=XENOPUS LAEVIS DNA sequence DA(J147):DT(I146) DT(J148):DA(I145) DC(J149):DG(I144) DA(J150):DT(I143) DA(J151):DT(I142) DT(J152):DA(I141) DA(J153):DT(I140) DT(J154):DA(I139) DC(J155):DG(I138) DC(J156):DG(I137) DA(J157):DT(I136) DC(J158):DG(I135) DC(J159):DG(I134) DT(J160):DA(I133) DG(J161):DC(I132) DC(J162):DG(I131) DA(J163):DT(I130) DG(J164):DC(I129) DA(J165):DT(I128) DT(J166):DA(I127) DT(J167):DA(I126) DC(J168):DG(I125) DT(J169):DA(I124) DA(J170):DT(I123) DC(J171):DG(I122) DC(J172):DG(I121) DA(J173):DT(I120) DA(J175):DT(I118) DA(J176):DT(I117) DG(J177):DC(I116) DT(J178):DA(I115) DG(J179):DC(I114) DT(J180):DA(I113) DA(J181):DT(I112) DT(J182):DA(I111) DT(J183):DA(I110) DT(J184):DA(I109) DG(J185):DC(I108) DG(J186):DC(I107) DA(J187):DT(I106) DA(J188):DT(I105) DA(J189):DT(I104) DC(J190):DG(I103) DT(J191):DA(I102) DG(J192):DC(I101) DC(J193):DG(I100) DT(J194):DA(I99) DC(J195):DG(I98) DC(J196):DG(I97) DA(J197):DT(I96) DT(J198):DA(I95) DC(J199):DG(I94) DA(J200):DT(I93) DA(J201):DT(I92) DA(J202):DT(I91) DA(J203):DT(I90) DG(J204):DC(I89) DG(J205):DC(I88) DC(J206):DG(I87) DA(J207):DT(I86) DT(J208):DA(I85) DG(J209):DC(I84) DT(J210):DA(I83) DT(J211):DA(I82) DC(J212):DG(I81) DA(J213):DT(I80) DG(J214):DC(I79) DC(J215):DG(I78) DG(J216):DC(I77) DG(J217):DC(I76) DA(J218):DT(I75) DA(J219):DT(I74) DT(J220):DA(I73) DT(J221):DA(I72) DC(J222):DG(I71) DC(J223):DG(I70) DG(J224):DC(I69) DC(J225):DG(I68) DT(J226):DA(I67) DG(J227):DC(I66) DA(J228):DT(I65) DA(J229):DT(I64) DC(J230):DG(I63) DA(J231):DT(I62) DT(J232):DA(I61) DG(J233):DC(I60) DC(J234):DG(I59) DC(J235):DG(I58) DT(J236):DA(I57) DT(J237):DA(I56) DT(J238):DA(I55) DT(J239):DA(I54) DG(J240):DC(I53) DA(J241):DT(I52) DT(J242):DA(I51) DG(J243):DC(I50) DG(J244):DC(I49) DA(J245):DT(I48) DG(J246):DC(I47) DC(J247):DG(I46) DA(J248):DT(I45) DG(J249):DC(I44) DT(J250):DA(I43) DT(J251):DA(I42) DT(J252):DA(I41) DC(J253):DG(I40) DC(J254):DG(I39) DA(J255):DT(I38) DA(J256):DT(I37) DA(J257):DT(I36) DT(J258):DA(I35) DA(J259):DT(I34) DC(J260):DG(I33) DA(J261):DT(I32) DC(J262):DG(I31) DT(J263):DA(I30) DT(J264):DA(I29) DT(J265):DA(I28) DT(J266):DA(I27) DG(J267):DC(I26) DG(J268):DC(I25) DT(J269):DA(I24) DA(J270):DT(I23) DG(J271):DC(I22) DA(J272):DT(I21) DA(J273):DT(I20) DT(J274):DA(I19) DC(J275):DG(I18) DT(J276):DA(I17) DG(J277):DC(I16) DC(J278):DG(I15) DA(J279):DT(I14) DG(J280):DC(I13) DG(J281):DC(I12) DT(J282):DA(I11) DG(J283):DC(I10) DG(J284):DC(I9) DA(J285):DT(I8) DT(J286):DA(I7) DA(J287):DT(I6) DT(J288):DA(I5) DT(J289):DA(I4) DG(J290):DC(I3) DA(J291):DT(I2) DT(J292):DA(I1) chainD ( 5) ARG1226 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 4 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 9) ARG1230 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence dgkkRrktRkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak >1s40_A:Nucleic_acid-binding_proteins; title=SOLUTION STRUCTURE OF THE CDC13 DNA-BINDING DOMAIN COMPLEXED WITH A SINGLE-STRANDED TELOMERIC DNA 11-MER organism=SACCHAROMYCES CEREVISIAE DNA sequence DG(B1) DT(B2) DG(B3) DT(B4) DG(B5) DG(B6) DG(B7) DT(B8) DG(B9) DT(B10) DG(B11) chainA ( 20) GLU24 3 0 0 0 0 0 0 0 0 0 0 ( 21) THR25 1 0 0 0 0 0 0 0 0 0 0 ( 23) TYR27 6 0 0 0 0 0 0 0 0 0 0 ( 34) SER38 0 0 0 0 0 8 0 0 0 0 0 ( 36) ASP40 0 0 0 0 0 1 0 0 0 0 0 ( 37) LYS41 0 0 0 0 0 25 0 0 0 0 0 ( 39) ALA43 0 0 0 3 0 0 0 0 0 0 0 ( 40) PHE44 0 0 0 2 0 0 0 0 0 0 0 ( 42) SER46 0 0 0 0 0 5 5 0 0 0 0 ( 44) VAL48 0 0 0 0 0 0 1 0 0 0 0 ( 56) ASN60 0 0 0 0 5 0 2 1 0 0 0 ( 57) TYR61 0 0 0 0 0 0 4 9 0 0 0 ( 58) LEU62 0 0 0 0 0 0 2 0 0 0 0 ( 59) TYR63 0 0 0 0 0 0 14 0 0 0 0 ( 66) TYR70 0 0 0 0 0 0 0 0 0 1 18 ( 77) LYS81 0 0 0 0 18 2 16 0 0 0 0 ( 81) TYR85 0 0 0 22 0 0 0 0 0 0 0 (107) ARG111 0 0 0 0 0 0 0 0 0 0 2 (108) ASP112 0 0 0 0 0 0 0 0 0 0 28 (110) ASN114 0 0 0 0 0 0 0 0 0 0 19 (123) LYS127 0 6 0 0 0 0 0 0 0 0 0 (127) TYR131 0 0 0 0 4 0 0 0 0 0 0 (132) ASN136 0 0 0 0 12 0 0 0 0 0 0 (133) ALA137 0 0 0 0 1 0 0 0 0 0 0 (136) ARG140 0 1 0 0 0 0 0 0 0 0 0 prot.sequence kmarkdptiefcqlgldtfETkYitmfgmlvscSfDKpAFiSfVfsdftkndivqNYLYdrylidYenklelnegfKaimYknqfetfdsklrkifnnglrdlqngRDeNlsqygivckmniKvkmYngklNAivRecepvphsqissiaspsqcehlrlfyqrafkrigesaisryfeeyrrffpi >1s6m_A:Origin_of_replication-binding_domain,_RBD-like; title=CONJUGATIVE RELAXASE TRWC IN COMPLEX WITH ORIT DNA. METAL-BOUND STRUCTURE organism=ESCHERICHIA COLI DNA sequence DG(B3):DC(B16) DC(B4):DG(B15) DA(B5):DT(B14) DC(B6):DG(B13) DC(B7):DG(B12) DG(B8):DA(B10) chainA ( 68) ALA73 0 0 0 5 2 0 ( 70) ARG75 0 3 10 4 0 0 ( 76) ARG81 1 0 0 0 0 0 (123) ARG128 6 13 10 0 0 0 (125) LYS130 0 0 0 7 0 0 prot.sequence mlshmvltrqdigraasyyedgaddydasewqgkgaeelglsgevdskrfrellagnigeghrimrSAtRqdskeRigldltfsapksvslqalvagdaeiikahdravartleqaearaqaRqKiqgktriettgnlvigkfrhetsrerdpqlhthavilnmtkrsdgqwralKndeivkatrylgavynaelahelqklgyqlrygkdgnfdlahidrqqiegfskrteqiaewyaargldpnsvsleqkqaakvlsrakktsvdrealraewqatakelgidfs >1s76_D:DNA/RNA_polymerases; title=T7 RNA POLYMERASE ALPHA BETA METHYLENE ATP ELONGATION COMPLEX organism=Enterobacteria phage T7 DNA sequence DG(T130):DC(N30) DC(T129):DG(N29) DC(T128):DG(N28) DG(T127):DC(N27) DT(T126):DA(N26) DG(T125):DC(N25) DC(T124):DG(N24) DG(T123):DC(N23) DC(T122):DG(N22) DA(T121):DT(N21) DT(T120):DT(N20) DT(T119):DG(N19) DC(T118):DC(N18) DG(T117):DA(N17) DC(T116):DT(N16) DC(T115):DT(N15) DG(T114):DT(N14) chainD (153) LYS164 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 (157) GLU168 0 0 0 0 0 0 0 0 0 0 11 0 0 0 0 0 0 (161) LYS172 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 (162) ARG173 0 0 0 0 0 0 0 0 0 0 0 0 0 36 0 0 0 (163) VAL174 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 (167) TYR178 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 (343) ARG379 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 (349) TYR385 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23 0 0 (391) TYR427 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 (578) ARG632 0 0 0 0 0 0 0 0 0 0 12 2 0 0 0 0 0 (582) THR636 0 0 0 0 0 0 0 0 0 0 13 0 0 0 0 0 0 (585) TYR639 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 (587) SER641 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 (590) PHE644 0 0 0 0 0 0 0 0 0 26 0 0 0 0 0 0 0 (593) ARG647 0 0 0 0 0 0 0 0 0 2 7 0 0 0 0 0 0 (595) GLN649 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 (616) PRO670 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 (617) ASN671 0 0 0 0 0 0 0 0 0 0 6 4 0 0 0 0 0 (726) PRO780 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 (730) HIS784 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 prot.sequence sdielaaipfntladhygerlareqlalehesyemgearfrkmferqlkagevadnaaakplittllpkmiarindwfeevkakrgkrptafqflqeikpeavayitikttlacltsadnttvqavasaigraiedearfgrirdleakhfkKnveEqlnKRVghvYkkafmqvveadmlskgawsswhkedsihvgvrciemliestgmvslhrqsetielapeyaeaiatragalagispmfqpcvvppkpwtgitgggywangrrplalvrthskkalmryedvympevykainiaqntawkinkkvlavanvitkwkhcpvedipaiereelpmtawkRaaaavYrkdkarksrrislefmleqankfanhkaiwfpynmdwrgrvYavsmfnpqgndmtkglltlakgkpigkegyywlkihgancagvdkvpfperikfieenhenimacaksplentwwaeqdspfcflafcfeyagvqhhglsyncslplafdgscsgiqhfsamlrdevggravnllpsetvqdiygivakkvneilqadaingtdnegtkalagqwlaygvtrsvtkRsvmTlaYgSkeFgfRqQvledtiqpaidsgkglmftqPNqaagymakliwesvsvtvvaaveamnwlksaakllaaevkdkktgeilrkrcavhwvtpdgfpvwqeykkpiqtrlnlmflgqfrlqptintnkdseidahkqesgiaPnfvHsqdgshlrktvvwahekygiesfalihdsfgtipadaanlfkavretmvdtyescdvladfydqfadqlhesqldkmpalpakgnlnlrdilesdfafa >1s77_D:DNA/RNA_polymerases; title=T7 RNAP PRODUCT PYROPHOSPHATE ELONGATION COMPLEX organism=Enterobacteria phage T7 DNA sequence DT(N14):DG(T114) DT(N15):DC(T115) DT(N16):DC(T116) DA(N17):DG(T117) DC(N18):DC(T118) DG(N19):DT(T119) DT(N20):DT(T120) DT(N21):DA(T121) DG(N22):DC(T122) DC(N23):DG(T123) DG(N24):DC(T124) DC(N25):DG(T125) DA(N26):DT(T126) DC(N27):DG(T127) DG(N28):DC(T128) DG(N29):DC(T129) DC(N30):DG(T130) chainD (154) ASN165 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 (157) GLU168 0 0 0 0 0 9 1 0 0 0 0 0 0 0 0 0 0 (161) LYS172 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 (162) ARG173 0 0 0 27 0 0 0 0 0 0 0 0 0 0 0 0 0 (167) TYR178 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (344) TYR385 0 0 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (386) TYR427 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 (577) ARG632 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 (581) THR636 0 0 0 0 0 0 10 0 0 0 0 0 0 0 0 0 0 (584) TYR639 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 (586) SER641 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 (589) PHE644 0 0 0 0 0 0 7 25 0 0 0 0 0 0 0 0 0 (592) ARG647 0 0 0 0 0 0 24 0 0 0 0 0 0 0 0 0 0 (594) GLN649 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 (614) GLN669 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 (615) PRO670 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 (616) ASN671 0 0 0 0 0 5 1 0 0 0 0 0 0 0 0 0 0 (725) PRO780 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 (729) HIS784 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 prot.sequence sdielaaipfntladhygerlareqlalehesyemgearfrkmferqlkagevadnaaakplittllpkmiarindwfeevkakrgkrptafqflqeikpeavayitikttlacltsadnttvqavasaigraiedearfgrirdleakhfkkNveEqlnKRvghvYkkafmqvveadmlskgawsswhkedsihvgvrciemliestgmvslhsetielapeyaeaiatragalagispmfqpcvvppkpwtgitgggywangrrplalvrthskkalmryedvympevykainiaqntawkinkkvlavanvitkwkhcpvedipaiereelpwkraaaavYrkdkarksrrislefmleqankfanhkaiwfpynmdwrgrvYavsmfnpqgndmtkglltlakgkpigkegyywlkihgancagvdkvpfperikfieenhenimacaksplentwwaeqdspfcflafcfeyagvqhhglsyncslplafdgscsgiqhfsamlrdevggravnllpsetvqdiygivakkvneilqadaingtdnevvklgtkalagqwlaygvtrsvtkRsvmTlaYgSkeFgfRqQvledtiqpaidsgkglmftQPNqaagymakliwesvsvtvvaaveamnwlksaakllaaevkdkktgeilrkrcavhwvtpdgfpvwqeykkpiqtrlnlmflgqfrlqptintnkdseidahkqesgiaPnfvHsqdgshlrktvvwahekygiesfalihdsfgtipadaanlfkavretmvdtyescdvladfydqfadqlhesqldkmpalpakgnlnlrdilesdfafa >1s97_C:DNA/RNA_polymerases;Lesion_bypass_DNA_polymerase_Y-family,_little_finger_domain; title=DPO4 WITH GT MISMATCH organism=Sulfolobus solfataricus DNA sequence DG(K5):DCT(C602) DT(K6):DG(G13) DA(K7):DT(G12) DG(K8):DC(G11) DT(K9):DA(G10) DC(K10):DG(G9) DC(K11):DG(G8) DT(K12):DA(G7) DT(K13):DA(G6) DC(K14):DG(G5) DC(K15):DG(G4) DC(K16):DG(G3) DC(K17):DG(G2) DC(K18):DG(G1) chainC ( 7) ASP7 6 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 9) ASP9 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 10) TYR10 3 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 11) PHE11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 32) VAL32 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 42) ALA42 5 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 44) ALA44 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 45) THR45 3 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 48) TYR48 2 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 51) ARG51 8 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 57) ALA57 8 0 0 0 0 0 0 0 0 0 0 0 0 0 (105) ASP105 2 0 0 0 0 0 0 0 0 0 0 0 0 0 (106) GLU106 1 0 0 0 0 0 0 0 0 0 0 0 0 0 (156) ASP156 1 0 0 0 0 0 0 0 0 0 0 0 0 0 (159) LYS159 10 0 0 0 0 0 0 0 0 0 0 0 0 0 (244) SER244 0 0 0 0 1 0 0 0 0 0 0 0 0 0 (332) ARG332 0 6 0 0 0 0 0 0 0 0 0 0 0 0 (336) ARG336 0 0 0 5 1 0 0 0 0 0 0 0 0 0 prot.sequence mivlfvdfdyfyaqveevlnpslkgkpvvvcVfsgrfedsgAvAtanyearkfgvkagipiveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyreaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldiadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtrvrkSigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgrtfphgisketaysesvkllqkileederkirRigvRfskfi >1s9f_A:DNA/RNA_polymerases;Lesion_bypass_DNA_polymerase_Y-family,_little_finger_domain; title=DPO WITH AT MATCHED organism=Sulfolobus solfataricus DNA sequence DG(E1):DC(I18) DG(E2):DC(I17) DG(E3):DC(I16) DG(E4):DC(I15) DG(E5):DC(I14) DA(E6):DT(I13) DA(E7):DT(I12) DG(E8):DC(I11) DG(E9):DC(I10) DA(E10):DT(I9) DC(E11):DG(I8) DT(E12):DA(I7) DA(E13):DT(I6) chainA (244) SER244 0 0 0 0 0 0 0 0 0 1 0 0 0 (332) ARG332 0 0 0 0 0 0 0 0 0 0 0 0 5 (336) ARG336 0 0 0 0 0 0 0 0 0 1 2 0 0 prot.sequence mivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagipiveakkilpnavylpmrKevyqqvssrimnllreysekieiasideayldisdkvrdyreaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldiadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtrvrkSigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgrtfphgisketaysesvkllqkileederkirRigvRfskfi >1s9k_CDE:p53-like_transcription_factors;E_set_domains; title=CRYSTAL STRUCTURE OF HUMAN NFAT1 AND FOS-JUN ON THE IL-2 ARRE1 SITE organism=HOMO SAPIENS DNA sequence DC(B5003):DG(A4020) DT(B5004):DA(A4019) DA(B5005):DT(A4018) DT(B5006):DA(A4017) DT(B5007):DA(A4016) DA(B5008):DT(A4015) DC(B5009):DG(A4014) DA(B5010):DT(A4013) DC(B5011):DG(A4012) DA(B5012):DT(A4011) DT(B5013):DA(A4010) DA(B5014):DT(A4009) DT(B5015):DA(A4008) DT(B5016):DA(A4007) DT(B5017):DA(A4006) DT(B5018):DA(A4005) DC(B5019):DG(A4004) DA(B5020):DT(A4003) chainC ( 23) ARG421 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 14 6 ( 26) TYR424 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 5 0 0 ( 29) GLU427 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 3 0 ( 32) ARG430 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 (139) ARG537 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 (173) GLN571 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 5 0 (174) ARG572 0 0 0 0 0 0 0 0 0 0 0 0 9 3 0 0 0 0 chainD ( 4) ARG143 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 8) ASN147 0 0 1 8 8 3 0 0 0 0 0 0 0 0 0 0 0 0 ( 11) ALA150 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 12) ALA151 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 ( 16) ARG155 0 0 0 0 0 2 12 16 0 0 0 0 0 0 0 0 0 0 chainE ( 6) ASN272 0 0 0 0 0 0 0 1 5 2 0 0 0 0 0 0 0 0 ( 9) ALA275 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 13) CYS279 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 ( 14) ARG280 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 prot.sequence wplssqsgsyelrievqpkphhRahYetEgsRgavkaptgghpvvqlhgymenkplglqifigtaderilkphafyqvhritgktvtttsyekivgntkvleiplepknnmratidcagilklrnadielrkgetdigRkntrvrlvfrvhipessgrivslqtasnpiecsQRsahelpmverqdtdsclvyggqqmiltgqnftseskvvftekttdgqqiwemeatvdkdksqpnmlfveipeyrnkhirtpvkvnfyvingkrkrsqpqhftyhpv/rriRrerNkmAAakcRnrrreltdtlqaetdqledeksalqteianllkekek/rkrmrNriAaskCRkrkleriarleekvktlkaqnselastanmlreqvaql >1s9k_E:Leucine_zipper_domain;A_DNA-binding_domain_in_eukaryotic_transcription_factors; title=CRYSTAL STRUCTURE OF HUMAN NFAT1 AND FOS-JUN ON THE IL-2 ARRE1 SITE organism=HOMO SAPIENS DNA sequence DC(B5003):DG(A4020) DT(B5004):DA(A4019) DA(B5005):DT(A4018) DT(B5006):DA(A4017) DT(B5007):DA(A4016) DA(B5008):DT(A4015) DC(B5009):DG(A4014) DA(B5010):DT(A4013) DC(B5011):DG(A4012) DA(B5012):DT(A4011) DT(B5013):DA(A4010) DA(B5014):DT(A4009) DT(B5015):DA(A4008) DT(B5016):DA(A4007) DT(B5017):DA(A4006) DT(B5018):DA(A4005) DC(B5019):DG(A4004) DA(B5020):DT(A4003) chainE ( 6) ASN272 0 0 0 0 0 0 0 1 5 2 0 0 0 0 0 0 0 0 ( 9) ALA275 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 13) CYS279 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 ( 14) ARG280 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 prot.sequence rkrmrNriAaskCRkrkleriarleekvktlkaqnselastanmlreqvaql >1sax_A:"Winged_helix"_DNA-binding_domain; title=THREE-DIMENSIONAL STRUCTURE OF S.AUREUS METHICILLIN-RESISTANCE REGULATING TRANSCRIPTIONAL REPRESSOR MECI IN COMPLEX WITH 25-BP DS- DNA organism=Staphylococcus aureus subsp. aureus DNA sequence DC(C2):DG(D25) DT(C3):DA(D24) DC(C4):DG(D23) DC(C5):DG(D22) DG(C6):DC(D21) DA(C7):DT(D20) DT(C8):DA(D19) DA(C9):DT(D18) DT(C10):DA(D17) DT(C11):DA(D16) DA(C12):DT(D15) DC(C13):DG(D14) DA(C14):DT(D13) DG(C15):DC(D12) DT(C16):DA(D11) DT(C17):DA(D10) DG(C18):DC(D9) DT(C19):DA(D8) DA(C20):DT(D7) DA(C21):DT(D6) DT(C22):DA(D5) DT(C23):DA(D4) DT(C24):DA(D3) DT(C25):DA(D2) chainA ( 41) LYS43 0 0 0 0 0 0 2 9 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 42) THR44 0 0 0 0 0 0 0 0 0 1 4 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 44) ARG46 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 45) THR47 0 0 0 0 0 0 0 0 0 9 7 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) LEU48 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 49) ARG51 0 0 0 0 0 0 0 0 0 0 7 11 11 0 0 0 0 0 0 0 0 0 0 0 prot.sequence nktyeissaewevmniiwmkkyasanniieeiqmqkdwspKTiRTLitRlykkgfidrkkdnkifqyyslveesdikyktsknfinkvykggfnslvlnfvekedlsqdeieelrnilnk >1sax_AB:"Winged_helix"_DNA-binding_domain; title=THREE-DIMENSIONAL STRUCTURE OF S.AUREUS METHICILLIN-RESISTANCE REGULATING TRANSCRIPTIONAL REPRESSOR MECI IN COMPLEX WITH 25-BP DS- DNA organism=Staphylococcus aureus subsp. aureus DNA sequence DC(C2):DG(D25) DT(C3):DA(D24) DC(C4):DG(D23) DC(C5):DG(D22) DG(C6):DC(D21) DA(C7):DT(D20) DT(C8):DA(D19) DA(C9):DT(D18) DT(C10):DA(D17) DT(C11):DA(D16) DA(C12):DT(D15) DC(C13):DG(D14) DA(C14):DT(D13) DG(C15):DC(D12) DT(C16):DA(D11) DT(C17):DA(D10) DG(C18):DC(D9) DT(C19):DA(D8) DA(C20):DT(D7) DA(C21):DT(D6) DT(C22):DA(D5) DT(C23):DA(D4) DT(C24):DA(D3) DT(C25):DA(D2) chainA ( 41) LYS43 0 0 0 0 0 0 2 9 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 42) THR44 0 0 0 0 0 0 0 0 0 1 4 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 44) ARG46 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 45) THR47 0 0 0 0 0 0 0 0 0 9 7 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) LEU48 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 49) ARG51 0 0 0 0 0 0 0 0 0 0 7 11 11 0 0 0 0 0 0 0 0 0 0 0 chainB ( 41) LYS43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 6 6 1 0 0 ( 42) THR44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 1 0 0 0 0 0 ( 44) ARG46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 ( 45) THR47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 9 0 0 0 0 0 ( 46) LEU48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 ( 49) ARG51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 13 8 0 0 0 0 0 0 prot.sequence nktyeissaewevmniiwmkkyasanniieeiqmqkdwspKTiRTLitRlykkgfidrkkdnkifqyyslveesdikyktsknfinkvykggfnslvlnfvekedlsqdeieelrnilnk/nktyeissaewevmniiwmkkyasanniieeiqmqkdwspKTiRTLitRlykkgfidrkkdnkifqyyslveesdikyktsknfinkvykggfnslvlnfvekedlsqdeieelrnilnk >1sfo_A:beta_and_beta-prime_subunits_of_DNA_dependent_RNA-polymerase; title=RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX organism=SACCHAROMYCES CEREVISIAE DNA sequence DA(T1) DC(T2) DG(T3) DA(T4) DT(T5) DC(T6) DC(T7) DT(T8) DC(T9) DT(T10) DC(T11) DG(T12) DA(T13) DT(T14) chainA (232) PHE252 0 0 0 0 0 0 0 0 0 0 0 0 5 2 (237) ARG257 0 0 0 0 0 0 0 0 0 0 0 0 0 1 (297) LYS317 0 0 0 0 0 0 0 0 0 0 0 0 0 4 (330) ARG350 0 0 0 0 0 1 0 0 0 0 0 0 0 0 (427) GLN447 0 0 0 0 1 0 0 0 0 0 0 0 0 0 (428) PRO448 0 0 0 0 4 0 0 0 0 0 0 0 0 0 (811) THR831 0 0 0 10 0 0 0 0 0 0 0 0 0 0 (1336) ARG1386 2 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence gqqyssaplrtvkevqfglfspeevraisvakirfpetmdetqtrakigglndprlgsidrnlkcqtcqegmnecpghfghidlakpvfhvgfiakikkvcecvcmhcgkllldehnelmrqalaikdskkrfaaiwtlcktkmvcetdvpslvsrggcgntqptirkdglklvgswklrvlsteeilnifkhisvkdftslgfnevfsrpewmiltclpvppppvrpsisFnesqRgeddltfkladilkanisletlehngaphhaieeaesllqfhvatymdndiagqpqalqKsgrpvksirarlkgkegrirgnlmgkrvdfsaRtvisgdpnleldqvgvpksiaktltypevvtpynidrltqlvrngpnehpgakyvirdsgdridlryskragdiqlqygwkverhimdndpvlfnrQPslhkmsmmahrvkvipystfrlnlsvtspynadfdgdemnlhvpqseetraelsqlcavplqivspqsnkpcmgivqdtlcgirkltlrdtfieldqvlnmlywvpdwdgviptpaiikpkplwsgkqilsvaipngihlqrfdegttllspkdngmliidgqiifgvvekktvgssngglihvvtrekgpqvcaklfgniqkvvnfwllhngfstgigdtiadgptmreitetiaeakkkvldvtkeaqanlltakhgmtlresfednvvrflneardkagrlaevnlkdlnnvkqmvmagskgsfiniaqmsacvgqqsvegkriafgfvdrtlphfskddyspeskgfvensylrgltpqefffhamggreglidtavkTaetgyiqrrlvkaledimvhydnttrnslgnviqfiygedgmdaahiekqsldtiggsdaafekryrvdllntdhtldpsllesgseilgdlklqvlldeeykqlvkdrkflrevfvdgeanwplpvnirriiqnaqqtfhidhtkpsdltikdivlgvkdlqenllvlrgkneiiqnaqrdavtlfccllrsrlatrrvlqeyrltkqafdwvlsnieaqflrsvvhpgemvgvlaaqsigepatqmtlkkvtsgvprlkeilnvaknmktpsltvylepghaadqeqaklirsaiehttlksvtiaseiyydpdprstvipedeeiiqlhfslqqspwllrleldraamndkdltmgqvgerikqtfkndlfviwsedndekliircrvvaeedhmlkkientmlenitlrgveniervvmmkydrkvpsptgeyvkepewvletdgvnlsevmtvpgidptriytnsfidimevlgieagraalykevynviasdgsyvnyrhmallvdvmttqggltsvtRhgfnrsntgalmrcsfeetveilfeagasaelddcrgvsenvilgqmapigtgafdvmi >1sfo_AB: title=RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX organism=SACCHAROMYCES CEREVISIAE DNA sequence DA(T1) DC(T2) DG(T3) DA(T4) DT(T5) DC(T6) DC(T7) DT(T8) DC(T9) DT(T10) DC(T11) DG(T12) DA(T13) DT(T14) chainA (232) PHE252 0 0 0 0 0 0 0 0 0 0 0 0 5 2 (237) ARG257 0 0 0 0 0 0 0 0 0 0 0 0 0 1 (297) LYS317 0 0 0 0 0 0 0 0 0 0 0 0 0 4 (330) ARG350 0 0 0 0 0 1 0 0 0 0 0 0 0 0 (427) GLN447 0 0 0 0 1 0 0 0 0 0 0 0 0 0 (428) PRO448 0 0 0 0 4 0 0 0 0 0 0 0 0 0 (811) THR831 0 0 0 10 0 0 0 0 0 0 0 0 0 0 (1336) ARG1386 2 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB prot.sequence gqqyssaplrtvkevqfglfspeevraisvakirfpetmdetqtrakigglndprlgsidrnlkcqtcqegmnecpghfghidlakpvfhvgfiakikkvcecvcmhcgkllldehnelmrqalaikdskkrfaaiwtlcktkmvcetdvpslvsrggcgntqptirkdglklvgswklrvlsteeilnifkhisvkdftslgfnevfsrpewmiltclpvppppvrpsisFnesqRgeddltfkladilkanisletlehngaphhaieeaesllqfhvatymdndiagqpqalqKsgrpvksirarlkgkegrirgnlmgkrvdfsaRtvisgdpnleldqvgvpksiaktltypevvtpynidrltqlvrngpnehpgakyvirdsgdridlryskragdiqlqygwkverhimdndpvlfnrQPslhkmsmmahrvkvipystfrlnlsvtspynadfdgdemnlhvpqseetraelsqlcavplqivspqsnkpcmgivqdtlcgirkltlrdtfieldqvlnmlywvpdwdgviptpaiikpkplwsgkqilsvaipngihlqrfdegttllspkdngmliidgqiifgvvekktvgssngglihvvtrekgpqvcaklfgniqkvvnfwllhngfstgigdtiadgptmreitetiaeakkkvldvtkeaqanlltakhgmtlresfednvvrflneardkagrlaevnlkdlnnvkqmvmagskgsfiniaqmsacvgqqsvegkriafgfvdrtlphfskddyspeskgfvensylrgltpqefffhamggreglidtavkTaetgyiqrrlvkaledimvhydnttrnslgnviqfiygedgmdaahiekqsldtiggsdaafekryrvdllntdhtldpsllesgseilgdlklqvlldeeykqlvkdrkflrevfvdgeanwplpvnirriiqnaqqtfhidhtkpsdltikdivlgvkdlqenllvlrgkneiiqnaqrdavtlfccllrsrlatrrvlqeyrltkqafdwvlsnieaqflrsvvhpgemvgvlaaqsigepatqmtlkkvtsgvprlkeilnvaknmktpsltvylepghaadqeqaklirsaiehttlksvtiaseiyydpdprstvipedeeiiqlhfslqqspwllrleldraamndkdltmgqvgerikqtfkndlfviwsedndekliircrvvaeedhmlkkientmlenitlrgveniervvmmkydrkvpsptgeyvkepewvletdgvnlsevmtvpgidptriytnsfidimevlgieagraalykevynviasdgsyvnyrhmallvdvmttqggltsvtRhgfnrsntgalmrcsfeetveilfeagasaelddcrgvsenvilgqmapigtgafdvmi/desapitaedswavisaffrekglvsqqldsfnqfvdytlqdiicedstliisfgkiyvtkpmvnesdgvthalypqearlrnltyssglfvdvkkkvfigrlpimlrskncylseatesdlyklkecpfdmggyfiingsekvliaqersagnivqvfkkaapspishvaeirsalekgsrfistlqvklygregssartikatlpyikqdipiviifralgiipdgeilEhicyDvndwqmlemlkpcvedgfviqdretaldfigkekriqyakdilqkeflphitqlegfesRkafflgyminrlllcaldrkdqddrdhfgkkrLdlagpllaqlfktlfkkltkdifrymqrtvelainaktitsglkyalatgnwgeqkkamssragvsqvlnrytysstlshlrrtntpiakprqlhnTHwglvcpaetpegqacglvknlslmscisvgtdpmpiitflsewgmepledyvphqspdatrvfvngvwhgvhrnparlmetlrtlrrkgdinpevsmirdirekelkiftdagrvyrplfiveddeslghkelkvrkghiaklmateyqdeytwssllneglveyidaeeeesiliamqpedlepaeadvdpakrirvshhattfthceihpsmilgvaasiipfpdhnqsprntyqsamgkqamgvfltnynvrmdtmanilyypqkplgttrameylkfrelpagqnaivaiacysgynqedsmimnqssidrglfrslffrsymdqekkygmsitetfekpqrtntlrmkhgtydkldddgliapgvrvsgedviigktTpisskrdastplrstengivdqvlvttnqdglkfvkvrvrttkipqigdkfasrhgqkgtigityrredmpftaegivpdliinphaipsrmtvahliecllskvaalsgnegdaspftditvegiskllrehgyqsrgfevmynghtgkklmaqiffgptyyqrlrhmvddkiharargpmqvltrqpvegrsrdgglrfgemerdcmiahgaasflkerlmeasdafrvhicgicglmtviaklnhnqfeckgcdnkidiyqihipyaakllfqelmamnitprlytdrsrdf >1sfu_A:"Winged_helix"_DNA-binding_domain; title=CRYSTAL STRUCTURE OF THE VIRAL ZALPHA DOMAIN BOUND TO LEFT-HANDED Z- DNA organism=Yaba-like disease virus DNA sequence DC(C1) DG(C2) DC(C3) DG(C4) DC(C5) DG(C6) chainA ( 46) TYR51 0 0 0 16 0 0 prot.sequence ctvndaeifslvkkevlslntndyttaislsnrlkinkkkinqqlYklqkedtvkmvpsnppkwfknync >1skm_A:S-adenosyl-L-methionine-dependent_methyltransferases; title=HHAI METHYLTRANSFERASE IN COMPLEX WITH DNA CONTAINING AN ABASIC SOUTH CARBOCYCLIC SUGAR AT ITS TARGET SITE organism=Haemophilus haemolyticus DNA sequence DC(C2):DG(D13) DC(C3):DG(D12) DA(C4):DT(D11) DT(C5):DA(D10) DG(C6):DC(D9) DC(C7):DG(D8) DC(C9):DG(D6) DT(C10):DA(D5) DG(C11):DC(D4) DA(C12):DT(D3) DC(C13):DG(D2) chainA ( 86) ILE86 0 0 0 0 0 0 2 5 0 0 0 ( 87) SER87 0 0 0 0 0 7 8 0 0 0 0 (228) ARG228 0 0 0 0 0 0 0 2 0 0 0 (237) GLN237 0 0 0 0 0 21 34 0 0 0 0 (239) GLU239 0 0 0 0 0 3 0 0 0 0 0 (240) ARG240 0 0 0 0 0 0 11 10 0 0 0 (252) SER252 0 0 0 0 0 2 0 0 0 0 0 (260) ALA260 0 0 0 1 0 0 0 0 0 0 0 (261) LYS261 0 0 0 1 0 0 0 0 0 0 0 prot.sequence mieikdkqltglrfidlfaglggfrlalescgaecvysnewdkyaqevyemnfgekpegditqvnektipdhdilcagfpcqafsISgkqkgfedsrgtlffdiarivrekkpkvvfmenvknfashdngntlevvkntmneldysfhakvlnaldygipqkreriymicfrndlniqnfqfpkpfelntfvkdlllpdsevehlvidrkdlvmtnqeieqttpktvRlgivgkggQgERiystrgiaitlSaygggifAKtggylvngktrklhprecarvmgypdsykvhpstsqaykqfgnsvvinvlqyiaynigsslnfkpy >1skn_P:A_DNA-binding_domain_in_eukaryotic_transcription_factors; title=THE BINDING DOMAIN OF SKN-1 IN COMPLEX WITH DNA: A NEW DNA-BINDING MOTIF organism=Caenorhabditis elegans DNA sequence DA(A3):DT(B15) DC(A4):DG(B14) DA(A5):DT(B13) DA(A6):DT(B12) DT(A7):DA(B11) DG(A8):DC(B10) DT(A9):DA(B9) DC(A10):DG(B8) DA(A11):DT(B7) DT(A12):DA(B6) DC(A13):DG(B5) DC(A14):DG(B4) DC(A15):DG(B3) chainP ( 52) ARG507 0 0 0 0 0 0 0 5 0 0 0 0 0 ( 56) ASN511 0 0 0 0 0 0 3 7 8 1 0 0 0 ( 60) ALA515 0 0 0 0 0 0 2 0 0 0 0 0 0 ( 63) CYS518 0 0 0 0 0 0 0 0 1 0 0 0 0 ( 64) ARG519 0 0 0 0 18 15 2 0 0 0 0 0 0 ( 67) ARG522 0 0 0 0 0 0 0 2 0 0 0 0 0 prot.sequence grqskdeqlasdnelpvsafqisemslselqqvlkneslseyqrqlirkirRrgkNkvaArtCRqrRtdrhdkm >1skr_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=T7 DNA POLYMERASE COMPLEXED TO DNA PRIMER/TEMPLATE AND DDATP organism=ENTEROBACTERIA PHAGE T7 DNA sequence DG(P12):DC(T15) DC(P13):DG(T14) DC(P14):DG(T13) DA(P15):DT(T12) DG(P16):DC(T11) DT(P17):DA(T10) DG(P18):DC(T9) DC(P19):DG(T8) DC(P20):DG(T7) DA(P21):DT(T6) 2DA(P22):DT(T5) DAD(A4004):DT(T4) chainA (370) LYS394 0 0 0 0 0 0 0 5 1 0 0 0 (405) ARG429 0 0 0 0 0 0 0 0 0 1 8 1 (412) ASN436 0 0 0 0 0 0 0 0 1 0 0 0 (415) GLN439 0 0 0 0 0 0 0 7 8 0 0 0 (451) ASP475 0 0 0 0 0 0 0 0 0 0 0 6 (453) SER477 0 0 0 0 0 0 0 0 0 0 0 1 (455) LEU479 0 0 0 0 0 0 0 0 0 0 0 1 (456) GLU480 0 0 0 0 0 0 0 0 0 0 0 1 (482) HIS506 0 0 0 0 0 0 0 0 0 0 0 8 (494) ARG518 0 0 0 0 0 0 0 0 0 0 0 6 (498) LYS522 0 0 0 0 0 0 0 0 0 0 0 12 (499) THR523 0 0 0 0 0 0 0 0 0 0 0 2 (502) TYR526 0 0 0 0 0 0 0 0 0 0 0 22 (506) TYR530 0 0 0 0 0 0 0 0 0 0 0 9 (512) LYS536 0 0 0 0 0 0 0 0 0 0 0 2 (516) ILE540 0 0 0 0 0 0 0 0 0 0 0 1 (576) ASN611 0 0 0 0 0 0 0 0 0 0 1 0 (580) GLN615 0 0 0 0 0 0 0 0 0 1 1 0 (619) ASP654 0 0 0 0 0 0 0 0 0 0 0 5 prot.sequence mivsdieanallesvtkfhcgviydystaeyvsyrpsdfgayldaleaevargglivfhnghkydvpaltklaklqlnrefhlprencidtlvlsrlihsnlkdtdmgllrsgklpgaleawgyrlgemkgeykddfkrmleeqgeeyvdgmewwnfneemmdynvqdvvvtkallekllsdkhyfppeidftdvgyttfwsesleavdiehraawllakqerngfpfdtkaieelyvelaarrsellrkltetfgswyqpkggtemfchprtgkplpkypriktpkvggidtreyvagapytpvehvvfnpssrdhiqkklqeagwvptkytdkgapvvddevlegvrvddpekqaaidlikeylmiqKrigqsaegdkawlryvaedgkihgsvnpngavtgRathafpNlaQipgvrspygeqcraafgaehhldgitgkpwvqagidasglelrclahfmarfdngeyaheilngdihtknqiaaelptrdnakTfiygflYgagdeKigqIvgagkergkelkkkflentpaiaalresiqqtlvekwkrrwikgldgrkvhvrsphaalNtllQsagalicklwiikteemlvekglkhgwdgdfaymawvHdeiqvgcrteeiaqvvietaqeamrwvgdhwnfrclldtegkmgpnwaich >1sks_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=BINARY 3' COMPLEX OF T7 DNA POLYMERASE WITH A DNA PRIMER/TEMPLATE CONTAINING A CIS-SYN THYMINE DIMER ON THE TEMPLATE organism=ENTEROBACTERIA PHAGE T7 DNA sequence DC(P13):DG(T14) DC(P14):DG(T13) DA(P15):DT(T12) DG(P16):DC(T11) DT(P17):DA(T10) DG(P18):DC(T9) DC(P19):DG(T8) DC(P20):DG(T7) 2DT(P21):DA(T6) chainA (382) LYS394 0 0 0 0 0 6 0 0 0 (417) ARG429 0 0 0 0 0 0 0 0 3 (424) ASN436 0 0 0 0 0 0 1 0 0 (427) GLN439 0 0 0 0 0 6 8 0 0 (518) TYR530 0 0 0 0 0 0 0 0 19 prot.sequence mivsdieanallesvtkfhcgviydystaeyvsyrpsdfgayldaleaevargglivfhnghkydvpaltklaklqlnrefhlprencidtlvlsrlihsnlkdtdmgllrsgklpgaleawgyrlgemkgeykddfkrmleeqgeeyvdgmewwnfneemmdynvqdvvvtkallekllsdkhyfppeidftdvgyttfwsesleavdiehraawllakqerngfpfdtkaieelyvelaarrsellrkltetfgswyqpkggtemfchprtgkplpkypriktpkvggifkkpknrepceldtreyvagapytpvehvvfnpssrdhiqkklqeagwvptkytdkgapvvddevlegvrvddpekqaaidlikeylmiqKrigqsaegdkawlryvaedgkihgsvnpngavtgRathafpNlaQipgvrspygeqcraafgaehhldgitgkpwvqagidasglelrclahfmarfdngeyaheilngdihtknqiaaelptrdnaktfiygflYgagdekigqivgagkergkelkkkflentpaiaalresiqqtlvekwkrrwikgldgrkvhvrsphaalntllqsagalicklwiikteemlvekglkhgwdgdfaymawvhdeiqvgcrteeiaqvvietaqeamrwvgdhwnfrclldtegkmgpnwaich >1skw_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=BINARY 3' COMPLEX OF T7 DNA POLYMERASE WITH A DNA PRIMER/TEMPLATE CONTAINING A DISORDERED CIS-SYN THYMINE DIMER ON THE TEMPLATE organism=ENTEROBACTERIA PHAGE T7 DNA sequence DC(P14):DG(T13) DA(P15):DT(T12) DG(P16):DC(T11) DT(P17):DA(T10) DG(P18):DC(T9) DC(P19):DG(T8) DC(P20):DG(T7) 2DT(P21):DA(T6) chainA (379) LYS394 0 0 0 0 6 2 0 0 (414) ARG429 0 0 0 0 0 0 3 6 (421) ASN436 0 0 0 0 0 1 0 0 (424) GLN439 0 0 0 0 5 7 0 0 (515) TYR530 0 0 0 0 0 0 0 13 (589) GLN615 0 0 0 0 0 0 0 2 (627) HIS653 0 0 0 0 0 0 1 0 prot.sequence mivsdieanallesvtkfhcgviydystaeyvsyrpsdfgayldaleaevargglivfhnghkydvpaltklaklqlnrefhlprencidtlvlsrlihsnlkdtdmgllrsgklpgaleawgyrlgemkgeykddfkrmleeqgeeyvdgmewwnfneemmdynvqdvvvtkallekllsdkhyfppeidftdvgyttfwsesleavdiehraawllakqerngfpfdtkaieelyvelaarrsellrkltetfgswyqpkggtemfchprtgkplpkypriktpkvggifkkpknceldtreyvagapytpvehvvfnpssrdhiqkklqeagwvptkytdkgapvvddevlegvrvddpekqaaidlikeylmiqKrigqsaegdkawlryvaedgkihgsvnpngavtgRathafpNlaQipgvrspygeqcraafgaehhldgitgkpwvqagidasglelrclahfmarfdngeyaheilngdihtknqiaaelptrdnaktfiygflYgagdekigqivgagkergkelkkkflentpaiaalresiqqtlvekwkrrwikgldgrkvhvrsphaalntllQsagalicklwiikteemlvekglkhgwdgdfaymawvHdeiqvgcrteeiaqvvietaqeamrwvgdhwnfrclldtegkmgpnwaich >1sl0_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=TERNARY 3' COMPLEX OF T7 DNA POLYMERASE WITH A DNA PRIMER/TEMPLATE CONTAINING A DISORDERED CIS-SYN THYMINE DIMER ON THE TEMPLATE AND AN INCOMING NUCLEOTIDE organism=ENTEROBACTERIA PHAGE T7 DNA sequence DA(T6):2DT(P21) DG(T7):DC(P20) DG(T8):DC(P19) DC(T9):DG(P18) DA(T10):DT(P17) DC(T11):DG(P16) DT(T12):DA(P15) DG(T13):DC(P14) DG(T14):DC(P13) DC(T15):DG(P12) chainA (366) LYS394 0 0 2 6 0 0 0 0 0 0 (401) ARG429 4 1 0 0 0 0 0 0 0 0 (408) ASN436 0 0 1 0 0 0 0 0 0 0 (411) GLN439 0 0 9 5 0 0 0 0 0 0 prot.sequence mivsdieanallesvtkfhcgviydystaeyvsyrpsdfgayldaleaevargglivfhnghkydvpaltklaklqlnrefhlprencidtlvlsrlihsnlkdtdmgllrsgklpgaleawgyrlgemkgeykddfkrmleeqgeeyvdgmewwnfneemmdynvqdvvvtkallekllsdkhyfppeidftdvgyttfwsesleavdiehraawllakqerngfpfdtkaieelyvelaarrsellrkltetfgswyqpkggtemfchprtgkplpkypriktpvgdtreyvaapytpvehvvfnpssrdhiqkklqeagwvptkytdkgapvvddevlegvrvddpekqaaidlikeylmiqKrigqsaegdkawlryvaedgkihgsvnpngavtgRathafpNlaQipgvrspygeqcraafgaehhldgitgkpwvqagidasglelrclahfmarfdngeyaheilngdihtknqiaaelptrdnaktfiygfkigqivgagkergkelkkkflentpaiaalresiqqtlvekwkrrwikgldgrkvhvrsphaalntllqsagalicklwiikteemlvekglkhgwdgdfaymawvhdeiqvgcrteeiaqvvietaqeamrwvgdhwnfrclldtegkmgpnwaich >1sl1_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=BINARY 5' COMPLEX OF T7 DNA POLYMERASE WITH A DNA PRIMER/TEMPLATE CONTAINING A CIS-SYN THYMINE DIMER ON THE TEMPLATE organism=ENTEROBACTERIA PHAGE T7 DNA sequence DC(P14):DG(T13) DA(P15):DT(T12) DG(P16):DC(T11) DT(P17):DA(T10) DG(P18):DC(T9) DC(P19):DG(T8) DC(P20):DG(T7) DT(P21):DA(T6) chainA (379) LYS394 0 0 0 0 6 0 0 0 (421) ASN436 0 0 0 0 0 1 0 0 (424) GLN439 0 0 0 0 5 7 0 0 prot.sequence mivsdieanallesvtkfhcgviydystaeyvsyrpsdfgayldaleaevargglivfhnghkydvpaltklaklqlnrefhlprencidtlvlsrlihsnlkdtdmgllrsgklpgaleawgyrlgemkgeykddfkrmleeqgeeyvdgmewwnfneemmdynvqdvvvtkallekllsdkhyfppeidftdvgyttfwsesleavdiehraawllakqerngfpfdtkaieelyvelaarrsellrkltetfgswyqpkggtemfchprtgkplpkypriktpkvggifkkpepceldtreyvagapytpvehvvfnpssrdhiqkklqeagwvptkytdkgapvvddevlegvrvddpekqaaidlikeylmiqKrigqsaegdkawlryvaedgkihgsvnpngavtgrathafpNlaQipgvrspygeqcraafgaehhldgitgkpwvqagidasglelrclahfmarfdngeyaheilngdihtknqiaaelptrdnaktfiygflygagdekigqivgagkergkelkkkflentpaiaalresiqqtlvekwkrrwikgldgrkvhvrsphaalntllqsagalicklwiikteemlvekglkhgwdgdfaymawvhdeiqvgcrteeiaqvvietaqeamrwvgdhwnfrclldtegkmgpnwaich >1sl2_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=TERNARY 5' COMPLEX OF T7 DNA POLYMERASE WITH A DNA PRIMER/TEMPLATE CONTAINING A CIS-SYN THYMINE DIMER ON THE TEMPLATE AND AN INCOMING NUCLEOTIDE organism=ENTEROBACTERIA PHAGE T7 DNA sequence DC(P14):DG(T13) DA(P15):DT(T12) DG(P16):DC(T11) DT(P17):DA(T10) DG(P18):DC(T9) DC(P19):DG(T8) DC(P20):DG(T7) DT(P21):DA(T6) chainA (371) LYS394 0 0 0 0 0 7 0 0 (406) ARG429 0 0 0 0 0 0 0 2 (413) ASN436 0 0 0 0 0 0 1 0 (416) GLN439 0 0 0 0 0 6 7 0 prot.sequence mivsdieanallesvtkfhcgviydystaeyvsyrpsdfgayldaleaevargglivfhnghkydvpaltklaklqlnrefhlprencidtlvlsrlihsnlkdtdmgllrsgklpgaleawgyrlgemkgeykddfkrmleeqgeeyvdgmewwnfneemmdynvqdvvvtkallekllsdkhyfppeidftdvgyttfwsesleavdiehraawllakqerngfpfdtkaieelyvelaarrsellrkltetfgswyqpkggtemfchprtgkplpkypriktpkvggildtreyvagapytpvehvvfnpssrdhiqkklqeagwvptkytdkgapvvddevlegvrvddpekqaaidlikeylmiqKrigqsaegdkawlryvaedgkihgsvnpngavtgRathafpNlaQipgvrspygeqcraafgaehhldgitgkpwvqagidasglelrclahfmarfdngeyaheilngdihtknqiaaelptrdnaktfiygflydekigqivgagkergkelkkkflentpaiaalresiqqtlvekwkrrwikgldgrkvhvrsphaalntllqsagalicklwiikteemlvekglkhgwdgdfaymawvHdeiqvgcrteeiaqvvietaqeamrwvgdhwnfrclldtegkmgpnwaich >1srs_AB: title=SERUM RESPONSE FACTOR (SRF) CORE COMPLEXED WITH SPECIFIC SRE DNA organism=Homo sapiens DNA sequence DC(W-8):DG(C-8) 5IU(W-7):DA(C-7) DT(W-6):DA(C-6) DC(W-5):DG(C-5) DC(W-4):DG(C-4) DT(W-3):DA(C-3) DA(W-2):DT(C-2) DA(W-1):DT(C-1) DT(W1):DA(C1) DT(W2):DA(C2) DA(W3):DT(C3) DG(W4):DC(C4) DG(W5):DC(C5) DC(W6):DG(C6) DC(W7):DG(C7) DA(W8):DT(C8) DT(W9):DA(C9) DG(W10):DC(C10) chainA ( 1) THR140 0 0 0 7 9 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 4) ARG143 0 0 0 0 0 7 12 7 0 0 0 0 0 0 0 0 0 0 ( 24) LYS163 0 0 3 4 2 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 1) THR140 0 0 0 0 0 0 0 0 0 0 0 6 3 0 0 0 0 0 ( 4) ARG143 0 0 0 0 0 0 0 0 6 11 8 0 0 0 0 0 0 0 ( 20) THR159 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 ( 23) SER162 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 ( 24) LYS163 0 0 0 0 0 0 0 0 0 0 0 7 5 3 0 0 0 0 prot.sequence TrgRvkikmefidnklrryttfsKrktgimkkayelstltgtqvlllvasetghvytfatrklqpmitsetgkaliqtclnspd/TrgRvkikmefidnklrryTtfSKrktgimkkayelstltgtqvlllvasetghvytfatrklqpmitsetgkaliqtcl >1srs_B:SRF-like; title=SERUM RESPONSE FACTOR (SRF) CORE COMPLEXED WITH SPECIFIC SRE DNA organism=Homo sapiens DNA sequence DC(C10):DG(W10) DA(C9):DT(W9) DT(C8):DA(W8) DG(C7):DC(W7) DG(C6):DC(W6) DC(C5):DG(W5) DC(C4):DG(W4) DT(C3):DA(W3) DA(C2):DT(W2) DA(C1):DT(W1) DT(C-1):DA(W-1) DT(C-2):DA(W-2) DA(C-3):DT(W-3) DG(C-4):DC(W-4) DG(C-5):DC(W-5) DA(C-6):DT(W-6) DA(C-7):5IU(W-7) DG(C-8):DC(W-8) chainB ( 1) THR140 0 0 0 0 0 3 6 0 0 0 0 0 0 0 0 0 0 0 ( 4) ARG143 0 0 0 0 0 0 0 8 11 6 0 0 0 0 0 0 0 0 ( 20) THR159 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 23) SER162 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 24) LYS163 0 0 0 0 3 5 7 0 0 0 0 0 0 0 0 0 0 0 prot.sequence TrgRvkikmefidnklrryTtfSKrktgimkkayelstltgtqvlllvasetghvytfatrklqpmitsetgkaliqtcl >1ssp_E:Uracil-DNA_glycosylase-like; title=WILD-TYPE URACIL-DNA GLYCOSYLASE BOUND TO URACIL-CONTAINING DNA organism=Homo sapiens DNA sequence DA(B22):DT(A10) DA(B23):DT(A9) DG(B24):DC(A8) DA(B25):DT(A7) DT(B26):DA(A6) DA(B27):ORP(A5) DA(B28):DT(A4) DC(B29):DG(A3) DA(B30):DT(A2) DG(B31):DC(A1) chainE ( 63) GLN144 0 0 0 0 0 6 0 0 0 0 ( 64) ASP145 0 0 0 0 0 5 0 0 0 0 ( 66) TYR147 0 0 0 0 0 3 0 0 0 0 ( 67) HIS148 0 0 0 0 0 4 0 0 0 0 ( 88) SER169 0 0 0 0 0 4 0 0 0 0 (133) ALA214 0 0 0 0 0 2 0 0 0 0 (187) HIS268 0 0 0 0 0 11 0 0 0 0 (189) SER270 0 0 0 0 0 4 0 0 0 0 (190) PRO271 0 0 0 0 0 0 6 0 0 0 (191) LEU272 0 0 0 0 30 3 22 0 0 0 (194) TYR275 0 0 0 0 0 1 0 0 0 0 (195) ARG276 0 0 0 1 2 0 0 0 0 0 prot.sequence meffgeswkkhlsgefgkpyfiklmgfvaeerkhytvyppphqvftwtqmcdikdvkvvilgqdpyhgpnqahglcfsvqrpvppppsleniykelstdiedfvhpghgdlsgwakqgvlllnavltvrahqanshkergweqftdavvswlnqnsnglvfllwgsyaqkkgsaidrkrhhvlqtahpsPLsvYRgffgcrhfsktnellqksgkkpidwkel >1suz_A:Restriction_endonuclease-like; title=THE STRUCTURE OF K92A ECORV BOUND TO COGNATE DNA AND MG2+ organism=Escherichia coli DNA sequence DA(D2):DT(C11) DA(D3):DT(C10) DG(D4):DC(C9) DA(D5):DT(C8) DT(D6):DA(C7) DA(D7):DT(C6) DT(D8):DA(C5) DC(D9):DG(C4) DT(D10):DA(C3) chainA ( 69) ASN70 0 0 0 0 0 3 8 6 0 (105) THR106 0 0 1 10 0 0 0 0 0 (181) SER183 0 0 2 7 0 0 0 0 0 (183) ASN185 0 0 18 10 0 0 0 0 0 (184) THR186 0 0 0 7 3 5 0 0 0 (186) ASN188 0 0 0 4 0 1 0 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidiattytnkenekikfTlggytsfirnntknivypfdqyiahwiigyvytrvatksslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk >1suz_AB: title=THE STRUCTURE OF K92A ECORV BOUND TO COGNATE DNA AND MG2+ organism=Escherichia coli DNA sequence DA(C3):DT(D10) DG(C4):DC(D9) DA(C5):DT(D8) DT(C6):DA(D7) DA(C7):DT(D6) DT(C8):DA(D5) DC(C9):DG(D4) DT(C10):DA(D3) DT(C11):DA(D2) chainA ( 69) ASN70 0 6 8 3 0 0 0 0 0 (105) THR106 0 0 0 0 0 10 1 0 0 (181) SER183 0 0 0 0 0 7 2 0 0 (183) ASN185 0 0 0 0 0 10 18 0 0 (184) THR186 0 0 0 5 3 7 0 0 0 (186) ASN188 0 0 0 1 0 4 0 0 0 chainB ( 69) ASN70 0 0 0 0 1 5 4 1 0 (102) THR106 0 1 10 0 0 0 0 0 0 (175) SER183 0 2 7 0 0 0 0 0 0 (177) ASN185 0 19 12 0 0 0 0 0 0 (178) THR186 0 0 9 3 5 0 0 0 0 (180) ASN188 0 0 4 0 1 0 0 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidiattytnkenekikfTlggytsfirnntknivypfdqyiahwiigyvytrvatksslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk/slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidiattytnekikfTlggytsfirnntknivypfdqyiahwiigyvytrvaslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk >1svc_P:p53-like_transcription_factors;E_set_domains; title=NFKB P50 HOMODIMER BOUND TO DNA organism=Homo sapiens DNA sequence DA(D1) DG(D2) DA(D3) DT(D4) DG(D5) DG(D6) DG(D7) DG(D8) DA(D9) DA(D10) DT(D11) DC(D12) DC(D13) DC(D14) DC(D15) DT(D16) DA(D17) DG(D18) DA(D19) chainP ( 15) ARG57 0 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 0 0 0 ( 17) ARG59 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 ( 18) TYR60 0 0 0 0 0 0 0 0 0 0 10 6 0 0 0 0 0 0 0 ( 21) GLU63 0 0 0 0 0 0 0 0 0 0 0 13 8 0 0 0 0 0 0 ( 25) HIS67 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 (202) LYS244 0 0 0 0 0 0 0 0 0 0 5 2 0 0 0 0 0 0 0 (266) ARG308 0 0 0 0 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 prot.sequence pylqileqpkqrgfRfRYvaEgpsHgglpgasseknkksypqvkicnyvgpakvivqlvtngknihlhahslvgkhcedgictvtagpkdmvvgfanlgilhvtkkkvfetlearmteacirgynpgllvhpdlaylqaegggdrqlgdrekelirqaalqqtkemdlsvvrlmftaflpdstgsftrrlepvvsdaiydsKapnasnlkivrmdrtagcvtggeeiyllcdkvqkddiqirfyeeeenggvwegfgdfsptdvhRqfaivfktpkykdinitkpasvfvqlrrksdletsepkpflyype >1sx8_A:Restriction_endonuclease-like; title=ECORV BOUND TO COGNATE DNA AND MN2+ organism=Escherichia coli DNA sequence DA(C3):DT(D10) DG(C4):DC(D9) DA(C5):DT(D8) DT(C6):DA(D7) DA(C7):DT(D6) DT(C8):DA(D5) DC(C9):DG(D4) DT(C10):DA(D3) DT(C11):DA(D2) chainA ( 69) ASN70 0 5 9 2 0 0 0 0 0 (105) THR106 0 0 0 0 0 11 0 0 0 (179) SER183 0 0 0 0 0 9 4 0 0 (181) ASN185 0 0 0 0 0 10 16 0 0 (182) THR186 0 0 0 5 3 9 0 0 0 (184) ASN188 0 0 0 0 0 4 0 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidiattytnkenekikfTlggytsfirnntknivypfdqyiahwiigyvytrvksslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk >1sx8_AB: title=ECORV BOUND TO COGNATE DNA AND MN2+ organism=Escherichia coli DNA sequence DA(C3):DT(D10) DG(C4):DC(D9) DA(C5):DT(D8) DT(C6):DA(D7) DA(C7):DT(D6) DT(C8):DA(D5) DC(C9):DG(D4) DT(C10):DA(D3) DT(C11):DA(D2) chainA ( 69) ASN70 0 5 9 2 0 0 0 0 0 (105) THR106 0 0 0 0 0 11 0 0 0 (179) SER183 0 0 0 0 0 9 4 0 0 (181) ASN185 0 0 0 0 0 10 16 0 0 (182) THR186 0 0 0 5 3 9 0 0 0 (184) ASN188 0 0 0 0 0 4 0 0 0 chainB ( 69) ASN70 0 0 0 0 0 4 4 0 0 (101) THR106 0 0 9 0 0 0 0 0 0 (173) SER183 0 2 6 0 0 0 0 0 0 (175) ASN185 0 16 9 0 0 0 0 0 0 (176) THR186 0 0 8 1 5 0 0 0 0 (178) ASN188 0 0 4 0 1 0 0 0 0 prot.sequence slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidiattytnkenekikfTlggytsfirnntknivypfdqyiahwiigyvytrvksslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk/slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgyiveepkqqNhypdftlykpsepnkkiaidiattytnkikfTlggytsfirnntknivypfdqyiahwiigyvytrvslktyninelneipkpykgvkvflqdkwviagdlagSgNTtNigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk >1sxp_A:UDP-Glycosyltransferase/glycogen_phosphorylase; title=BGT IN COMPLEX WITH A 13MER DNA CONTAINING A CENTRAL A:G MISMATCH organism=Enterobacteria phage T4 DNA sequence DC(D14):DG(C13) DT(D15):DA(C12) DA(D16):DT(C11) DT(D17):DA(C10) DC(D18):DG(C9) DT(D19):DA(C8) DG(D20):DA(C7) DA(D21):DT(C6) DG(D22):DC(C5) DT(D23):DA(C4) DA(D24):DT(C3) DT(D25):DA(C2) chainA ( 10) ASN10 0 0 0 0 0 0 2 0 0 0 0 0 ( 19) PRO19 0 0 0 0 0 0 3 0 0 0 0 0 ( 22) GLU22 0 0 0 0 0 0 7 0 0 0 0 0 ( 66) ASN66 0 0 0 0 0 0 1 0 0 0 0 0 ( 70) ASN70 0 0 0 0 0 64 9 0 0 0 0 0 ( 71) PHE71 0 0 0 0 0 0 2 0 0 0 0 0 ( 72) PHE72 0 0 0 0 0 0 1 54 0 0 0 0 ( 75) LYS75 0 0 0 0 0 0 0 6 0 0 0 0 ( 99) THR99 0 0 0 0 0 0 1 0 0 0 0 0 (100) ASP100 0 0 0 0 0 0 2 0 0 0 0 0 (102) ARG102 0 0 0 0 0 0 4 0 0 0 0 0 (103) LEU103 0 0 0 0 0 0 8 0 0 0 0 0 (115) ARG115 0 0 0 0 0 16 13 0 0 0 0 0 prot.sequence mkiaiinmgNnvinfktvPssEtiylfkvisemglnvdiislkngvytksfdevdvndydrlivvNssiNFFggKpnlailsaqkfmakykskiyylfTDiRLpfsqswpnvknRpwaylyteeellikspikvisqginldiakaahkkvdnviefeyfpieqykihmndfqlskptkktldviyggsfrsgqreskmveflfdtglnieffgnarekqfknpkypwtkapvftgkipmnmvseknsqaiaaliigdknyndnfitlrvwetmasdavmlideefdtkhriindarfyvnnraelidrvnelkhsdvlrkemlsiqhdilnktrakkaewqdafkkaidl >1sxp_AB:UDP-Glycosyltransferase/glycogen_phosphorylase; title=BGT IN COMPLEX WITH A 13MER DNA CONTAINING A CENTRAL A:G MISMATCH organism=Enterobacteria phage T4 DNA sequence DC(D14):DG(C13) DT(D15):DA(C12) DA(D16):DT(C11) DT(D17):DA(C10) DC(D18):DG(C9) DT(D19):DA(C8) DG(D20):DA(C7) DA(D21):DT(C6) DG(D22):DC(C5) DT(D23):DA(C4) DA(D24):DT(C3) DT(D25):DA(C2) chainA ( 10) ASN10 0 0 0 0 0 0 2 0 0 0 0 0 ( 19) PRO19 0 0 0 0 0 0 3 0 0 0 0 0 ( 22) GLU22 0 0 0 0 0 0 7 0 0 0 0 0 ( 66) ASN66 0 0 0 0 0 0 1 0 0 0 0 0 ( 70) ASN70 0 0 0 0 0 64 9 0 0 0 0 0 ( 71) PHE71 0 0 0 0 0 0 2 0 0 0 0 0 ( 72) PHE72 0 0 0 0 0 0 1 54 0 0 0 0 ( 75) LYS75 0 0 0 0 0 0 0 6 0 0 0 0 ( 99) THR99 0 0 0 0 0 0 1 0 0 0 0 0 (100) ASP100 0 0 0 0 0 0 2 0 0 0 0 0 (102) ARG102 0 0 0 0 0 0 4 0 0 0 0 0 (103) LEU103 0 0 0 0 0 0 8 0 0 0 0 0 (115) ARG115 0 0 0 0 0 16 13 0 0 0 0 0 chainB (215) ASN215 14 1 0 0 0 0 0 0 0 0 0 0 (217) ARG217 6 4 1 0 0 0 0 0 0 0 0 0 (220) GLN220 1 0 0 0 0 0 0 0 0 0 0 0 prot.sequence mkiaiinmgNnvinfktvPssEtiylfkvisemglnvdiislkngvytksfdevdvndydrlivvNssiNFFggKpnlailsaqkfmakykskiyylfTDiRLpfsqswpnvknRpwaylyteeellikspikvisqginldiakaahkkvdnviefeyfpieqykihmndfqlskptkktldviyggsfrsgqreskmveflfdtglnieffgnarekqfknpkypwtkapvftgkipmnmvseknsqaiaaliigdknyndnfitlrvwetmasdavmlideefdtkhriindarfyvnnraelidrvnelkhsdvlrkemlsiqhdilnktrakkaewqdafkkaidl/mkiaiinmgnnvinfktvpssetiylfkvisemglnvdiislkngvytksfdevdvndydrlivvnssinffggkpnlailsaqkfmakykskiyylftdirlpfsqswpnvknrpwaylyteeellikspikvisqginldiakaahkkvdnviefeyfpieqykihmndfqlskptkktldviyggsfrsgqreskmveflfdtglnieffgNaRekQfknpkypwtkapvftgkipmnmvseknsqaiaaliigdknyndnfitlrvwetmasdavmlideefdtkhriindarfyvnnraelidrvnelkhsdvlrkemlsiqhdilnktrakkaewqdafkkaidl >1t03_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=HIV-1 REVERSE TRANSCRIPTASE CROSSLINKED TO TENOFOVIR TERMINATED TEMPLATE-PRIMER (COMPLEX P) organism=HUMAN IMMUNODEFICIENCY VIRUS 1 DNA sequence DC(P803):DG(T725) DA(P804):DT(T724) DG(P805):DC(T723) DT(P806):DA(T722) DC(P807):DG(T721) DC(P808):DG(T720) DC(P809):DG(T719) DT(P810):DA(T718) DG(P811):DC(T717) DT(P812):DA(T716) DT(P813):DA(T715) DC(P814):DG(T714) DG(P815):DC(T713) DG(P816):DC(T712) MRG(P817):DC(T711) DC(P818):DG(T710) DG(P819):DC(T709) DC(P820):DG(T708) DC(P821):DG(T707) chainA ( 94) ILE94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 (183) TYR183 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 6 (184) MET184 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 (356) ARG356 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 (448) ARG448 0 0 7 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence pispietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaikkkdstkwrklvdfrelnkrtqdfwevqlgIphpaglkkkksvtvldvgdayfsvpldedfrkytaftipsinnetpgiryqynvlpqgwkgspaifqssmtkilepfkkqnpdiviyqYMddlyvgsdleigqhrtkieelrqhllrwglttpdkkhqkeppflwmgyelhpdkwtvqpivlpekdswtvndicklvgklnwasqiypgikvrqlskllrgtkalteviplteeaelelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyaRmrgahtndvkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwipewefvntpplvklwyqlekepivgaetfyvdgaanRetklgkagyvtnkgrqkvvpltnttnqktelqaiylalqdsglevnivtdsqyalgiiqaqpdkseselvnqiieqlikkekvylawvpahkgiggneqvdklvsagirk >1t03_AB:DNA/RNA_polymerases;Ribonuclease_H-like; title=HIV-1 REVERSE TRANSCRIPTASE CROSSLINKED TO TENOFOVIR TERMINATED TEMPLATE-PRIMER (COMPLEX P) organism=HUMAN IMMUNODEFICIENCY VIRUS 1 DNA sequence DC(P803):DG(T725) DA(P804):DT(T724) DG(P805):DC(T723) DT(P806):DA(T722) DC(P807):DG(T721) DC(P808):DG(T720) DC(P809):DG(T719) DT(P810):DA(T718) DG(P811):DC(T717) DT(P812):DA(T716) DT(P813):DA(T715) DC(P814):DG(T714) DG(P815):DC(T713) DG(P816):DC(T712) MRG(P817):DC(T711) DC(P818):DG(T710) DG(P819):DC(T709) DC(P820):DG(T708) DC(P821):DG(T707) chainA ( 94) ILE94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 (183) TYR183 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 6 (184) MET184 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 (356) ARG356 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 (448) ARG448 0 0 7 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB prot.sequence pispietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaikkkdstkwrklvdfrelnkrtqdfwevqlgIphpaglkkkksvtvldvgdayfsvpldedfrkytaftipsinnetpgiryqynvlpqgwkgspaifqssmtkilepfkkqnpdiviyqYMddlyvgsdleigqhrtkieelrqhllrwglttpdkkhqkeppflwmgyelhpdkwtvqpivlpekdswtvndicklvgklnwasqiypgikvrqlskllrgtkalteviplteeaelelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyaRmrgahtndvkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwipewefvntpplvklwyqlekepivgaetfyvdgaanRetklgkagyvtnkgrqkvvpltnttnqktelqaiylalqdsglevnivtdsqyalgiiqaqpdkseselvnqiieqlikkekvylawvpahkgiggneqvdklvsagirk/pispietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaikkkdstkwrklvdfrelnkrtqdfwevqlgIphpaglkkkksvtvldvgdayfsvpldedfrkytaftipsinnetpgiryqynvlpqgwkgspaifqssmtkilepfkkqnpdiviyqYMddlyvgsdleigqhrtkieelrqhllrwglttpdkkhqkeppflwmgyelhpdkwtvqpivlpekdswtvndiqklvgklnwasqiypgikvrqlskllrgtkalteviplteeaelelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyaRmrgahtndvkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwipewefvntpplvklwyql >1t05_AB:DNA/RNA_polymerases;Ribonuclease_H-like; title=HIV-1 REVERSE TRANSCRIPTASE CROSSLINKED TO TEMPLATE-PRIMER WITH TENOFOVIR-DIPHOSPHATE BOUND AS THE INCOMING NUCLEOTIDE SUBSTRATE organism=HUMAN IMMUNODEFICIENCY VIRUS 1 DNA sequence DG(T708):DC(P821) DC(T709):DC(P820) DG(T710):DG(P819) DC(T711):DC(P818) DC(T712):DG(P816) DC(T713):DG(P815) DG(T714):DC(P814) DA(T715):DT(P813) DA(T716):DT(P812) DC(T717):DG(P811) DA(T718):DT(P810) DG(T719):DC(P809) DG(T720):DC(P808) DG(T721):DC(P807) DA(T722):DT(P806) DC(T723):DG(P805) DT(T724):DA(P804) DG(T725):DC(P803) chainA ( 94) ILE94 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (183) TYR183 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (448) ARG448 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 8 2 0 chainB prot.sequence pispietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaikkkdstkwrklvdfrelnkrtqdfwevqlgIphpaglkkkksvtvldvgdayfsvpldedfrkytaftipsinnetpgiryqynvlpqgwkgspaifqssmtkilepfkkqnpdiviyqYmddlyvgsdleigqhrtkieelrqhllrwglttpdkkhqkeppflwmgyelhpdkwtvqpivlpekdswtvndicklvgklnwasqiypgikvrqlskllrgtkalteviplteeaelelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyarmrgahtndvkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwipewefvntpplvklwyqlekepivgaetfyvdgaanRetklgkagyvtnkgrqkvvpltnttnqktelqaiylalqdsglevnivtdsqyalgiiqaqpdkseselvnqiieqlikkekvylawvpahkgiggneqvdklvsa/spietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaikkkdstkwrklvdfrelnkrtqdfwevqlgipHpaglkkkksvtvldvgdayfsvpldedfrkytaftipsinnetpgiryqynvlpqgwkgspaifqssmtkilepfrkqnpdiviyqymDdlyvgsdleigqhrtkieelrqhllrwglttpgyelhpdkwtvqpivlpekdswtvndiqklvgklnwasqiypgikvrqlskllrgtkalteviplteeaelelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyarmrgahtndvkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwipewefvntpplvklwyql >1t2k_A:"Winged_helix"_DNA-binding_domain; title=STRUCTURE OF THE DNA BINDING DOMAINS OF IRF3, ATF-2 AND JUN BOUND TO DNA organism=? DNA sequence DA(E2):DT(F31) DA(E3):DT(F30) DA(E4):DT(F29) DT(E5):DA(F28) DG(E6):DC(F27) DA(E7):DT(F26) DC(E8):DG(F25) DA(E9):DT(F24) DT(E10):DA(F23) DA(E11):DT(F22) DG(E12):DC(F21) DG(E13):DC(F20) DA(E14):DT(F19) DA(E15):DT(F18) DA(E16):DT(F17) DA(E17):DT(F16) DC(E18):DG(F15) DT(E19):DA(F14) DG(E20):DC(F13) DA(E21):DT(F12) DA(E22):DT(F11) DA(E23):DT(F10) DG(E24):DC(F9) DG(E25):DC(F8) DG(E26):DC(F7) DA(E27):DT(F6) DG(E28):DC(F5) DA(E29):DT(F4) DA(E30):DT(F3) DG(E31):DC(F2) chainA ( 40) LEU42 0 0 0 0 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 76) ARG78 0 0 0 0 0 0 0 0 0 0 0 0 0 6 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 77) ASN79 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 79) ARG81 0 0 0 0 0 0 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 80) SER82 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 84) ARG86 0 0 0 0 0 0 0 0 0 0 0 0 0 2 7 7 1 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence tpkprilpwlvsqldlgqlegvawvnksrtrfripwkhgLrqdaqqedfgifqawaeatgayvpgrdkpdlptwkRNfRSalnRkeglrlaedrskdphdphkiyefvns >1t2k_ABCD: title=STRUCTURE OF THE DNA BINDING DOMAINS OF IRF3, ATF-2 AND JUN BOUND TO DNA organism=HOMO SAPIENS DNA sequence DC(F2):DG(E31) DT(F3):DA(E30) DT(F4):DA(E29) DC(F5):DG(E28) DT(F6):DA(E27) DC(F7):DG(E26) DC(F8):DG(E25) DC(F9):DG(E24) DT(F10):DA(E23) DT(F11):DA(E22) DT(F12):DA(E21) DC(F13):DG(E20) DA(F14):DT(E19) DG(F15):DC(E18) DT(F16):DA(E17) DT(F17):DA(E16) DT(F18):DA(E15) DT(F19):DA(E14) DC(F20):DG(E13) DC(F21):DG(E12) DT(F22):DA(E11) DA(F23):DT(E10) DT(F24):DA(E9) DG(F25):DC(E8) DT(F26):DA(E7) DC(F27):DG(E6) DA(F28):DT(E5) DT(F29):DA(E4) DT(F30):DA(E3) DT(F31):DA(E2) chainA ( 40) LEU42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 0 0 0 0 0 ( 76) ARG78 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 6 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 77) ASN79 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 79) ARG81 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4 0 0 0 0 0 0 0 0 0 0 0 ( 80) SER82 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 84) ARG86 0 0 0 0 0 0 0 0 0 0 0 0 0 1 7 7 2 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 37) HIS40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 39) LEU42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 75) ARG78 0 0 0 0 0 0 0 0 0 3 5 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 76) ASN79 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 78) ARG81 0 0 0 0 0 0 0 0 0 0 0 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 79) SER82 0 0 0 0 0 0 0 0 1 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 80) ALA83 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 83) ARG86 0 0 0 0 0 0 0 4 6 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainC ( 10) ASN262 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 ( 11) ARG263 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 14) ALA266 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 ( 17) SER269 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 ( 18) ARG270 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 10 0 0 0 0 0 0 chainD ( 9) ASN344 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 8 7 0 0 0 ( 10) ARG345 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 12) ALA347 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 ( 13) ALA348 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 ( 16) SER351 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 ( 17) ARG352 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 8 2 0 0 0 0 0 prot.sequence tpkprilpwlvsqldlgqlegvawvnksrtrfripwkhgLrqdaqqedfgifqawaeatgayvpgrdkpdlptwkRNfRSalnRkeglrlaedrskdphdphkiyefvns/pkprilpwlvsqldlgqlegvawvnksrtrfripwkHgLrqdaqqedfgifqawaeatgayvpgrdkpdlptwkRNfRSAlnRkeglrlaedrskdphdphkiyefvn/mkaerkrmrNRiaAskSRkrkleriarleekvktlkaqnselastanmlreqvaqlkqkvmn/krrkflerNRaAAsrSRqkrkvwvqslekkaedlsslngqlqsevtllrnevaqlkqllla >1t2t_A:DNA-binding_domain_of_intron-encoded_endonucleases; title=CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF INTRON ENDONUCLEASE I- TEVI WITH OPERATOR SITE organism=Enterobacteria phage T4 DNA sequence DA(C32):DT(B21) DT(C33):DA(B20) DT(C34):DA(B19) DA(C35):DT(B18) DA(C36):DT(B17) DA(C37):DT(B16) DG(C38):DC(B15) DG(C39):DC(B14) DG(C40):DC(B13) DC(C41):DG(B12) DA(C42):DT(B11) DG(C43):DC(B10) DT(C44):DA(B9) DC(C45):DG(B8) DC(C46):DG(B7) DT(C47):DA(B6) DA(C48):DT(B5) DC(C49):DG(B4) DA(C50):DT(B3) DA(C51):DT(B2) chainA ( 10) GLN158 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4 ( 20) ARG168 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 6 0 0 ( 22) ARG170 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 6 1 0 0 ( 27) ASN175 0 0 0 0 0 0 0 0 0 0 0 0 0 3 10 0 0 0 0 0 ( 28) SER176 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 7 0 0 0 ( 29) PHE177 0 0 0 0 0 0 0 0 0 0 0 0 0 8 5 0 0 0 0 0 ( 34) HIS182 0 0 0 0 0 0 0 0 0 0 0 0 6 4 0 0 0 0 0 0 ( 42) ILE190 0 0 0 0 0 0 0 0 0 0 0 3 3 0 0 0 0 0 0 0 ( 46) MET194 0 0 0 0 0 0 0 0 0 0 6 8 0 0 0 0 0 0 0 0 ( 51) PRO199 0 0 0 0 0 0 0 0 6 2 0 0 0 0 0 0 0 0 0 0 ( 53) ASN201 0 0 0 0 0 0 0 3 9 3 0 0 0 0 0 0 0 0 0 0 ( 77) SER225 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 78) SER226 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 80) LEU228 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 82) THR230 0 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 83) TYR231 3 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence kfckcgvriQtsaytcskcRnRsgenNSFfnhkHsditkskIsekMkgkkPsNikkiscdgvifdcaadaarhfkiSSgLvTYrvksdkwnwfyin >1t38_A:Methylated_DNA-protein_cysteine_methyltransferase,_C-terminal_domain;Methylated_DNA-protein_cysteine_methyltransferase_domain; title=HUMAN O6-ALKYLGUANINE-DNA ALKYLTRANSFERASE BOUND TO DNA CONTAINING O6- METHYLGUANINE organism=Homo sapiens DNA sequence DT(C14):DA(B13) DA(C15):DT(B12) DC(C16):DG(B11) DT(C17):DA(B10) DA(C18):DT(B9) DG(C19):DC(B8) DC(C20):6OG(B7) DC(C21):DG(B6) DA(C22):DT(B5) DT(C23):DA(B4) DG(C24):DC(B3) DG(C25):DC(B2) DC(C26):DG(B1) chainA ( 89) TYR114 0 0 0 0 0 0 13 0 0 0 0 0 0 (103) ARG128 0 0 0 0 0 54 6 40 0 0 0 0 0 (104) ALA129 0 0 0 0 0 0 0 1 2 0 0 0 0 (109) MET134 0 0 0 0 0 0 11 0 0 0 0 0 0 (110) ARG135 0 0 0 0 0 0 3 0 0 0 0 0 0 (120) SER145 0 0 0 0 0 0 4 0 0 0 0 0 0 (123) VAL148 0 0 0 0 0 0 3 0 0 0 0 0 0 (133) TYR158 0 0 0 0 0 0 15 0 0 0 0 0 0 (134) SER159 0 0 0 0 0 0 6 0 0 0 0 0 0 (140) LYS165 0 0 0 0 0 0 5 0 0 0 0 0 0 prot.sequence emkrttldsplgklelsgceqglheikllgpeplmqctawlnayfhqpeaieefpvpalhhpvfqqesftrqvlwkllkvvkfgevisyqqlaalagnpkaaRAvggamrgnpvpilipshrvvcssgavgnysgglavkewllaheghrl >1t39_B:Methylated_DNA-protein_cysteine_methyltransferase,_C-terminal_domain;Methylated_DNA-protein_cysteine_methyltransferase_domain; title=HUMAN O6-ALKYLGUANINE-DNA ALKYLTRANSFERASE COVALENTLY CROSSLINKED TO DNA organism=Homo sapiens DNA sequence DG(E1):DC(F26) DC(E2):DG(F25) DC(E3):DG(F24) DA(E4):DT(F23) DT(E5):DA(F22) DG(E6):DC(F21) E1X(E7):DC(F20) DC(E8):DG(F19) DT(E9):DA(F18) DA(E10):DT(F17) DG(E11):DC(F16) DT(E12):DA(F15) DA(E13):DT(F14) chainB ( 88) TYR114 0 0 0 0 0 0 13 0 0 0 0 0 0 (102) ARG128 0 0 0 0 0 96 16 21 0 0 0 0 0 (108) MET134 0 0 0 0 0 0 10 0 0 0 0 0 0 (109) ARG135 0 0 0 0 0 0 2 0 0 0 0 0 0 (119) CYS145 0 0 0 0 0 0 8 0 0 0 0 0 0 (122) VAL148 0 0 0 0 0 0 2 0 0 0 0 0 0 (131) ASN157 0 0 0 0 0 0 1 0 0 0 0 0 0 (132) TYR158 0 0 0 0 0 0 6 0 0 0 0 0 0 (133) SER159 0 0 0 0 0 0 5 0 0 0 0 0 0 (139) LYS165 0 0 0 0 0 0 5 0 0 0 0 0 0 prot.sequence mkrttldsplgklelsgceqglheikllgpeplmqctawlnayfhqpeaieefpvpalhhpvfqqesftrqvlwkllkvvkfgevisyqqlaalagnpkaaRavggamrgnpvpilipchrvvcssgavgnysgglavkewllahegh >1t3n_AB: title=STRUCTURE OF THE CATALYTIC CORE OF DNA POLYMERASE IOTA IN COMPLEX WITH DNA AND DTTP organism=Homo sapiens DNA sequence DG(P1):DC(T18) DG(P2):DC(T17) DG(P3):DC(T16) DG(P4):DC(T15) DG(P5):DC(T14) DA(P6):DT(T13) DA(P7):DT(T12) DG(P8):DC(T11) DG(P9):DC(T10) DA(P10):DT(T9) DC(P11):DG(T8) DC(P12):DG(T7) DOC(P13):DG(T6) TTP(B902):DA(T5) chainA ( 97) LEU123 2 0 0 0 0 0 0 0 0 0 0 0 0 0 (279) GLU305 6 0 0 0 0 0 0 0 0 0 0 0 0 0 (317) ARG343 0 0 0 0 3 4 0 0 0 0 0 0 0 0 (331) ARG357 0 1 3 0 0 0 0 0 0 0 0 0 0 0 (335) GLN361 0 0 0 0 0 4 0 0 0 0 0 0 0 0 chainB ( 8) ASP454 0 0 0 0 0 0 0 0 0 0 0 0 0 4 ( 10) ASP456 0 0 0 0 0 0 0 0 0 0 0 0 0 1 ( 11) CYS457 0 0 0 0 0 0 0 0 0 0 0 0 0 2 ( 12) PHE458 0 0 0 0 0 0 0 0 0 0 0 0 0 1 ( 13) TYR459 0 0 0 0 0 0 0 0 0 0 0 0 2 3 ( 33) GLN479 0 0 0 0 0 0 0 0 0 0 0 0 0 9 ( 36) LEU482 0 0 0 0 0 0 0 0 0 0 0 0 0 9 ( 38) VAL484 0 0 0 0 0 0 0 0 0 0 0 0 0 7 ( 39) THR485 0 0 0 0 0 0 0 0 0 0 0 0 0 5 ( 42) TYR488 0 0 0 0 0 0 0 0 0 0 0 0 0 4 ( 45) ARG491 0 0 0 0 0 0 0 0 0 0 0 0 0 10 ( 52) LEU498 0 0 0 0 0 0 0 0 0 0 0 0 0 4 ( 73) LEU519 0 0 0 0 0 0 0 0 0 0 0 0 1 0 (100) ASP546 0 0 0 0 0 0 0 0 0 0 0 0 0 7 (101) GLU547 0 0 0 0 0 0 0 0 0 0 0 0 0 1 (188) LYS634 0 0 0 0 0 0 0 0 0 0 0 0 0 3 (275) SER721 0 0 0 0 0 0 0 0 0 1 0 0 0 0 (279) GLU725 0 0 0 0 0 0 0 0 0 0 0 2 2 0 (317) ARG763 0 0 0 0 0 0 6 6 0 0 0 0 0 0 (335) GLN781 0 0 0 0 0 0 8 0 0 0 0 0 0 0 prot.sequence srvivhvdldcfyaqvemisnpelkdkplgvqqkylvvtcnyearklgvkklmnvrdakekcpqlvlvngedltryremsykvtelleefspvverLgfdenfvdltemvekrlqqlqsdelsavtvsghvynnqsinlldvlhirllvgsqiaaemreamynqlgltgcagvasnkllaklvsgvfkpnqqtvllpescqhlihslnhikeipgigyktakclealginsvrdlqtfspkilekelgisvaqriqklsfgednspvilsgppqsfseEdsfkkcsseveaknkieellasllnrvcqdgrkphtvRliirryssekhygResrQcpipshviqklgtgnydvmtpmvdilmklfrnmvnvkmpfhltllsvcfcnlk/srvivhvdldcfYaqvemisnpelkdkplgvqQkyLvVtcnyearklgvkklmnvrdakekcpqlvlvngedLtryremsykvtelleefspvverlgfdenfvdltemvekrlqqlqsdelsavtvsghvynnqsinlldvlhirllvgsqiaaemreamynqlgltgcagvasnkllaklvsgvfkpnqqtvllpescqhlihslnhikeipgigyktakclealginsvrdlqtfspkilekelgisvaqriqklsfgednspvilsgppqSfseEdsfkkcsseveaknkieellasllnrvcqdgrkphtvRliirryssekhygresrQcpipshviqklgtgnydvmtpmvdilmklfrnmvnvkmpfhltllsvcfcnlk >1t3n_B:DNA/RNA_polymerases;Lesion_bypass_DNA_polymerase_Y-family,_little_finger_domain; title=STRUCTURE OF THE CATALYTIC CORE OF DNA POLYMERASE IOTA IN COMPLEX WITH DNA AND DTTP organism=Homo sapiens DNA sequence DG(P1):DC(T18) DG(P2):DC(T17) DG(P3):DC(T16) DG(P4):DC(T15) DG(P5):DC(T14) DA(P6):DT(T13) DA(P7):DT(T12) DG(P8):DC(T11) DG(P9):DC(T10) DA(P10):DT(T9) DC(P11):DG(T8) DC(P12):DG(T7) DOC(P13):DG(T6) TTP(B902):DA(T5) chainB ( 8) ASP454 0 0 0 0 0 0 0 0 0 0 0 0 0 4 ( 10) ASP456 0 0 0 0 0 0 0 0 0 0 0 0 0 1 ( 11) CYS457 0 0 0 0 0 0 0 0 0 0 0 0 0 2 ( 12) PHE458 0 0 0 0 0 0 0 0 0 0 0 0 0 1 ( 13) TYR459 0 0 0 0 0 0 0 0 0 0 0 0 2 3 ( 33) GLN479 0 0 0 0 0 0 0 0 0 0 0 0 0 9 ( 36) LEU482 0 0 0 0 0 0 0 0 0 0 0 0 0 9 ( 38) VAL484 0 0 0 0 0 0 0 0 0 0 0 0 0 7 ( 39) THR485 0 0 0 0 0 0 0 0 0 0 0 0 0 5 ( 42) TYR488 0 0 0 0 0 0 0 0 0 0 0 0 0 4 ( 45) ARG491 0 0 0 0 0 0 0 0 0 0 0 0 0 10 ( 52) LEU498 0 0 0 0 0 0 0 0 0 0 0 0 0 4 ( 73) LEU519 0 0 0 0 0 0 0 0 0 0 0 0 1 0 (100) ASP546 0 0 0 0 0 0 0 0 0 0 0 0 0 7 (101) GLU547 0 0 0 0 0 0 0 0 0 0 0 0 0 1 (188) LYS634 0 0 0 0 0 0 0 0 0 0 0 0 0 3 (275) SER721 0 0 0 0 0 0 0 0 0 1 0 0 0 0 (279) GLU725 0 0 0 0 0 0 0 0 0 0 0 2 2 0 (317) ARG763 0 0 0 0 0 0 6 6 0 0 0 0 0 0 (335) GLN781 0 0 0 0 0 0 8 0 0 0 0 0 0 0 prot.sequence srvivhvdldcfYaqvemisnpelkdkplgvqQkyLvVtcnyearklgvkklmnvrdakekcpqlvlvngedLtryremsykvtelleefspvverlgfdenfvdltemvekrlqqlqsdelsavtvsghvynnqsinlldvlhirllvgsqiaaemreamynqlgltgcagvasnkllaklvsgvfkpnqqtvllpescqhlihslnhikeipgigyktakclealginsvrdlqtfspkilekelgisvaqriqklsfgednspvilsgppqSfseEdsfkkcsseveaknkieellasllnrvcqdgrkphtvRliirryssekhygresrQcpipshviqklgtgnydvmtpmvdilmklfrnmvnvkmpfhltllsvcfcnlk >1t7p_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=T7 DNA POLYMERASE COMPLEXED TO DNA PRIMER/TEMPLATE,A NUCLEOSIDE TRIPHOSPHATE, AND ITS PROCESSIVITY FACTOR THIOREDOXIN organism=ENTEROBACTERIA PHAGE T7 DNA sequence DC(T4):DG3(P23) DT(T5):2DA(P22) DT(T6):DA(P21) DG(T7):DC(P20) DG(T8):DC(P19) DC(T9):DG(P18) DA(T10):DT(P17) DC(T11):DG(P16) DT(T12):DA(P15) DG(T13):DC(P14) DG(T14):DC(P13) DC(T15):DG(P12) chainA (363) LYS394 0 0 0 1 5 0 0 0 0 0 0 0 (398) ARG429 1 7 1 0 0 0 0 0 0 0 0 0 (405) ASN436 0 0 0 1 0 0 0 0 0 0 0 0 (408) GLN439 0 0 0 8 7 0 0 0 0 0 0 0 (444) ASP475 5 0 0 0 0 0 0 0 0 0 0 0 (446) SER477 1 0 0 0 0 0 0 0 0 0 0 0 (448) LEU479 1 0 0 0 0 0 0 0 0 0 0 0 (449) GLU480 1 0 0 0 0 0 0 0 0 0 0 0 (473) ASP504 1 0 0 0 0 0 0 0 0 0 0 0 (475) HIS506 7 0 0 0 0 0 0 0 0 0 0 0 (487) ARG518 6 0 0 0 0 0 0 0 0 0 0 0 (491) LYS522 10 0 0 0 0 0 0 0 0 0 0 0 (492) THR523 4 0 0 0 0 0 0 0 0 0 0 0 (495) TYR526 23 0 0 0 0 0 0 0 0 0 0 0 (499) TYR530 8 0 0 0 0 0 0 0 0 0 0 0 (509) ILE540 1 0 0 0 0 0 0 0 0 0 0 0 (569) ASN611 1 1 0 0 0 0 0 0 0 0 0 0 (573) GLN615 0 1 0 0 0 0 0 0 0 0 0 0 (612) ASP654 5 0 0 0 0 0 0 0 0 0 0 0 prot.sequence mivsdieanallesvtkfhcgviydystaeyvsyrpsdfgayldaleaevargglivfhnghkydvpaltklaklqlnrefhlprencidtlvlsrlihsnlkdtdmgllrsgklpgaleawgyrlgemkgeykddfkrmleeqgeeyvdgmewwnfneemmdynvqdvvvtkallekllsdkhyfppeidftdvgyttfwsesleavdiehraawllakqerngfpfdtkaieelyvelaarrsellrkltetfgswyqpkggtemfchprtgkplpkypriktpkeyvagapytpvehvvfnpssrdhiqkklqeagwvptkytdkgapvvddevlegvrvddpekqaaidlikeylmiqKrigqsaegdkawlryvaedgkihgsvnpngavtgRathafpNlaQipgvrspygeqcraafgaehhldgitgkpwvqagidasglelrclahfmarfdngeyaheilngdihtknqiaaelptrdnakTfiygflYgagdekigqIvgagkergkelkkkflentpaiaalresiqqtlvekwkrrwikgldgrkvhvrsphaalNtllQsagalicklwiikteemlvekglkhgwdgdfaymawvHdeiqvgcrteeiaqvvietaqeamrwvgdhwnfrclldtegkmgpnwaich >1t8e_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=T7 DNA POLYMERASE TERNARY COMPLEX WITH DCTP AT THE INSERTION SITE. organism=ENTEROBACTERIA PHAGE T7 DNA sequence DC(C1001):DG(D2026) DG(C1002):DC(D2025) DA(C1003):DT(D2024) DA(C1004):DT(D2023) DA(C1005):DT(D2022) DA(C1006):DT(D2021) DC(C1007):DG(D2020) DG(C1008):DC(D2019) DA(C1009):DT(D2018) DC(C1010):DG(D2017) DG(C1011):DC(D2016) DG(C1012):DC(D2015) DC(C1013):DG(D2014) DC(C1014):DG(D2013) DA(C1015):DT(D2012) DG(C1016):DC(D2011) DT(C1017):DA(D2010) DG(C1018):DC(D2009) DC(C1019):DG(D2008) DC(C1020):DG(D2007) DA(C1021):DT(D2006) 2DT(C1022):DA(D2005) DCT(A1023):DG(D2004) chainA (388) LYS394 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4 0 0 0 0 (423) ARG429 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 6 1 (430) ASN436 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 (433) GLN439 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 8 0 0 0 (469) ASP475 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 (473) LEU479 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 (474) GLU480 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 (500) HIS506 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 (512) ARG518 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 (516) LYS522 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 (517) THR523 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 (520) TYR526 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19 (524) TYR530 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 (526) ALA532 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 (530) LYS536 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 (534) ILE540 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 (605) ASN611 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 (609) GLN615 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 (648) ASP654 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 prot.sequence mivsdieanallesvtkfhcgviydystaeyvsyrpsdfgayldaleaevargglivfhnghkydvpaltklaklqlnrefhlprencidtlvlsrlihsnlkdtdmgllrsgklpgaleawgyrlgemkgeykddfkrmleeqgeeyvdgmewwnfneemmdynvqdvvvtkallekllsdkhyfppeidftdvgyttfwsesleavdiehraawllakqerngfpfdtkaieelyvelaarrsellrkltetfgswyqpkggtemfchprtgkplpkypriktpkvggifkkpknkaqregrepceldtreyvagapytpvehvvfnpssRdhiqkklqeagwvptkytdkgapvvddevlegvrvddpekqaaidlikeylmiqKrigqsaegdkawlryvaedgkihgsvnpngavtgRathafpNlaQipgvrspygeqcraafgaehhldgitgkpwvqagidasglelrclahfmarfdngeyaheilngdihtknqiaaelptrdnakTfiYgflYgAgdeKigqIvgagkergkelkkkflentpaiaalresiqqtlvessqwvageqqvkwkrrwikgldgrkvhvrsphaalNtllQsagalicklwiikteemlvekglkhgwdgdfaymawvHdeiqvgcrteeiaqvvietaqeamrwvgdhwnfrclldtegkmgpnwaich >1t9i_AB:Homing_endonucleases; title=I-CREI(D20N)/DNA COMPLEX organism=Chlamydomonas reinhardtii DNA sequence DC(D551):DG(C524) DG(D552):DC(C523) DA(D553):DT(C522) DA(D554):DT(C521) DA(D555):DT(C520) DC(D556):DG(C519) DT(D557):DA(C518) DG(D558):DC(C517) DT(D559):DA(C516) DC(D560):DG(C515) DT(D561):DA(C514) DC(D562):DG(C513) DA(D563):DT(C512) DC(D564):DG(C511) DG(D565):DC(C510) DA(D566):DT(C509) DC(D567):DG(C508) DG(D568):DC(C507) DT(D569):DA(C506) DT(D570):DA(C505) DT(D571):DA(C504) DT(D572):DA(C503) DG(D573):DC(C502) DC(D574):DG(C501) chainA ( 21) SER22 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 23) ILE24 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) GLN26 0 0 0 0 0 0 6 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 27) LYS28 0 0 0 0 3 8 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) ASN30 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 31) SER32 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 32) TYR33 0 11 11 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 37) GLN38 0 0 7 13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 43) GLN44 0 0 0 0 0 0 0 0 5 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 45) THR46 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 65) TYR66 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 67) ARG68 0 0 0 0 0 0 12 11 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 69) ARG70 0 0 0 0 0 0 0 0 16 14 3 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 71) SER72 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 ( 72) VAL73 0 0 0 0 0 0 0 0 0 0 5 2 0 0 0 0 0 0 0 0 0 0 0 0 (138) LYS139 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 (139) THR140 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 21) SER322 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 23) ILE324 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 0 0 0 0 ( 25) GLN326 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 5 1 0 0 0 0 0 ( 27) LYS328 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 13 2 0 0 0 0 ( 29) ASN330 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 ( 31) SER332 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 2 ( 32) TYR333 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 8 20 0 ( 37) GLN338 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 4 0 0 ( 43) GLN344 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5 1 0 0 0 0 0 0 0 ( 45) THR346 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 ( 65) TYR366 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 ( 67) ARG368 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 14 7 0 0 0 0 0 0 ( 69) ARG370 0 0 0 0 0 0 0 0 0 0 0 0 0 6 11 17 0 0 0 0 0 0 0 0 ( 71) SER372 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 ( 72) VAL373 0 0 0 0 0 0 0 0 0 0 0 0 2 6 0 0 0 0 0 0 0 0 0 0 (138) LYS439 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 (139) THR440 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 prot.sequence ntkynkefllylagfvdgngSiIaQiKpNqSYkfkhQlSltfQvTqktqrrwfldklvdeigvgYvRdRgSVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravlds/ntkynkefllylagfvdgngSiIaQiKpNqSYkfkhQlSltfQvTqktqrrwfldklvdeigvgYvRdRgSVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravldsls >1t9i_B:Homing_endonucleases; title=I-CREI(D20N)/DNA COMPLEX organism=Chlamydomonas reinhardtii DNA sequence DG(C501):DC(D574) DC(C502):DG(D573) DA(C503):DT(D572) DA(C504):DT(D571) DA(C505):DT(D570) DA(C506):DT(D569) DC(C507):DG(D568) DG(C508):DC(D567) DT(C509):DA(D566) DC(C510):DG(D565) DG(C511):DC(D564) DT(C512):DA(D563) DG(C513):DC(D562) DA(C514):DT(D561) DG(C515):DC(D560) DA(C516):DT(D559) DC(C517):DG(D558) DA(C518):DT(D557) DG(C519):DC(D556) DT(C520):DA(D555) DT(C521):DA(D554) DT(C522):DA(D553) DC(C523):DG(D552) DG(C524):DC(D551) chainB ( 21) SER322 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 23) ILE324 0 0 0 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) GLN326 0 0 0 0 0 1 5 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 27) LYS328 0 0 0 0 2 13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) ASN330 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 31) SER332 2 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 32) TYR333 0 20 8 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 37) GLN338 0 0 4 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 43) GLN344 0 0 0 0 0 0 0 1 5 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 45) THR346 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 65) TYR366 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 67) ARG368 0 0 0 0 0 0 7 14 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 69) ARG370 0 0 0 0 0 0 0 0 17 11 6 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 71) SER372 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 ( 72) VAL373 0 0 0 0 0 0 0 0 0 0 6 2 0 0 0 0 0 0 0 0 0 0 0 0 (138) LYS439 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 (139) THR440 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence ntkynkefllylagfvdgngSiIaQiKpNqSYkfkhQlSltfQvTqktqrrwfldklvdeigvgYvRdRgSVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravldsls >1t9j_A:Homing_endonucleases; title=I-CREI(Q47E)/DNA COMPLEX organism=Chlamydomonas reinhardtii DNA sequence DC(D551):DG(C524) DG(D552):DC(C523) DA(D553):DT(C522) DA(D554):DT(C521) DA(D555):DT(C520) DC(D556):DG(C519) DT(D557):DA(C518) DG(D558):DC(C517) DT(D559):DA(C516) DC(D560):DG(C515) DT(D561):DA(C514) DC(D562):DG(C513) DA(D563):DT(C512) DC(D564):DG(C511) DG(D565):DC(C510) DA(D566):DT(C509) DC(D567):DG(C508) DG(D568):DC(C507) DT(D569):DA(C506) DT(D570):DA(C505) DT(D571):DA(C504) DT(D572):DA(C503) DG(D573):DC(C502) DC(D574):DG(C501) chainA ( 20) SER22 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 22) ILE24 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 24) GLN26 0 0 0 0 0 0 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 26) LYS28 0 0 0 0 3 9 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) ASN30 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 30) SER32 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 31) TYR33 0 14 9 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 36) GLN38 0 0 4 12 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 42) GLN44 0 0 0 0 0 0 0 0 6 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 44) THR46 0 0 0 0 0 0 0 0 0 6 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 64) TYR66 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 66) ARG68 0 0 0 0 0 0 8 13 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 68) ARG70 0 0 0 0 0 0 0 0 15 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 71) VAL73 0 0 0 0 0 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 0 (137) LYS139 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 (138) THR140 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence tkynkefllylagfvdgdgSiIaQiKpNqSYkfkhQlSltfQvTektqrrwfldklvdeigvgYvRdRgsVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld >1t9j_AB:Homing_endonucleases; title=I-CREI(Q47E)/DNA COMPLEX organism=Chlamydomonas reinhardtii DNA sequence DG(C501):DC(D574) DC(C502):DG(D573) DA(C503):DT(D572) DA(C504):DT(D571) DA(C505):DT(D570) DA(C506):DT(D569) DC(C507):DG(D568) DG(C508):DC(D567) DT(C509):DA(D566) DC(C510):DG(D565) DG(C511):DC(D564) DT(C512):DA(D563) DG(C513):DC(D562) DA(C514):DT(D561) DG(C515):DC(D560) DA(C516):DT(D559) DC(C517):DG(D558) DA(C518):DT(D557) DG(C519):DC(D556) DT(C520):DA(D555) DT(C521):DA(D554) DT(C522):DA(D553) DC(C523):DG(D552) DG(C524):DC(D551) chainA ( 20) SER22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 22) ILE24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 ( 24) GLN26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 7 0 0 0 0 0 0 ( 26) LYS28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 9 3 0 0 0 0 ( 28) ASN30 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 ( 30) SER32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 ( 31) TYR33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 9 14 0 ( 36) GLN38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 12 4 0 0 ( 42) GLN44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 6 0 0 0 0 0 0 0 0 ( 44) THR46 0 0 0 0 0 0 0 0 0 0 0 0 0 1 6 0 0 0 0 0 0 0 0 0 ( 64) TYR66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 66) ARG68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 13 8 0 0 0 0 0 0 ( 68) ARG70 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 15 0 0 0 0 0 0 0 0 ( 71) VAL73 0 0 0 0 0 0 0 0 0 0 0 0 1 4 0 0 0 0 0 0 0 0 0 0 (137) LYS139 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 (138) THR140 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 chainB ( 20) SER322 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 22) ILE324 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 24) GLN326 0 0 0 0 0 1 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 26) LYS328 0 0 0 0 2 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) ASN330 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 30) SER332 2 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 31) TYR333 0 17 10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 36) GLN338 0 0 8 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 42) GLN344 0 0 0 0 0 0 0 0 6 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 44) THR346 0 0 0 0 0 0 0 0 0 5 1 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 64) TYR366 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 66) ARG368 0 0 0 0 0 0 9 13 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 68) ARG370 0 0 0 0 0 0 0 0 18 14 3 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 71) VAL373 0 0 0 0 0 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 0 (137) LYS439 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 (138) THR440 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence tkynkefllylagfvdgdgSiIaQiKpNqSYkfkhQlSltfQvTektqrrwfldklvdeigvgYvRdRgsVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld/tkynkefllylagfvdgdgSiIaQiKpNqSYkfkhQlSltfQvTektqrrwfldklvdeigvgYvRdRgsVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld >1tau_A:DNA/RNA_polymerases;PIN_domain-like;5'_to_3'_exonuclease,_C-terminal_subdomain;Ribonuclease_H-like; title=TAQ POLYMERASE (E.C.2.7.7.7)/DNA/B-OCTYLGLUCOSIDE COMPLEX organism=Thermus aquaticus DNA sequence DC(P958):DG(T908) DG(P957):DC(T907) DG(P956):DC(T906) DA(P955):DT(T905) DT(P954):DA(T904) DC(P953):DG(T903) DG(P952):DC(T902) DC(P951):DG(T901) chainA (541) ASN580 0 0 0 0 1 0 0 0 (544) ASN583 0 0 0 0 11 10 0 0 (628) PHE667 0 0 0 0 0 0 0 5 (632) TYR671 0 0 0 0 0 0 0 53 (638) ARG677 0 0 0 0 0 0 0 14 (707) ARG746 0 0 0 0 0 0 4 8 (711) ASN750 0 0 0 0 0 0 0 1 (715) GLN754 0 0 0 0 0 0 0 4 prot.sequence pkgrvllvdghhlayrtfhalkglttsrgepvqavygfaksllkalkedgdavivvfdaraptpedfprqlalikelvdllglarlevpgyeaddvlaslakkaekegyevriltadkdlyqllsdrihvlhpegylitpawlwekyglrpdqwadyraltgdesdnlpgvkgigektarklleewgsleallknldrlkpairekilahmddlklswdlakvrtdlplevdfakrrepdrerlraflerlefgsllhefgllespkaleeapwpppegafvgfvlsrkepmwadllalaaarggrvhrapepykalrdlkeargllakdlsvlalreglglppgddpmllaylldpsnttpegvarryggewteeageraalserlfanlwgrlegeerllwlyreverplsavlahmeatgvrldvaylralslevaeeiarleaevfrlaghpfnlnsrdqlervlfdelstsaavlealreahpivekilqyreltklkstyidplpdlihprtgrlhtrfnqtatatgrlsssdpNlqNipvrtplgqrirrafiaeegwllvaldysqielrvlahlsgdenlirvfqegrdihtetaswmfgvpreavdplmrraaktinFgvlYgmsahRlsqelaipyeeaqafieryfqsfpkvrawiektleegrrrgyvetlfgrrryvpdlearvksvreaaeRmafNmpvQgtaadlmklamvklfprleemgarmllqvhdelvleapkeraeavarlakevmegvyplavplevevgigedwlsake >1tc3_C:Homeodomain-like; title=TRANSPOSASE TC3A1-65 FROM CAENORHABDITIS ELEGANS organism=Caenorhabditis elegans DNA sequence DA(B101):DT(A20) DG(B102):DC(A19) DT(B103):DA(A18) DT(B104):DA(A17) DC(B105):DG(A16) DT(B106):DA(A15) DA(B107):DT(A14) DT(B108):DA(A13) DA(B109):DT(A12) DG(B110):DC(A11) DG(B111):DC(A10) DA(B112):DT(A9) DC(B113):DG(A8) DC(B114):DG(A7) DC(B115):DG(A6) DC(B116):DG(A5) DC(B117):DG(A4) DC(B118):DG(A3) DC(B119):DG(A2) chainC ( 1) PRO202 0 0 0 0 0 4 6 7 4 0 0 0 0 0 0 0 0 0 0 ( 2) ARG203 0 0 0 0 0 0 0 10 18 5 0 0 0 0 0 0 0 0 0 ( 25) HIS226 0 0 0 0 0 0 0 0 0 0 0 0 0 7 6 0 0 0 0 ( 34) SER235 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 ( 35) ARG236 0 0 0 0 0 0 0 0 0 0 0 2 15 9 0 0 0 0 0 ( 36) HIS237 0 0 0 0 0 0 0 0 9 15 23 0 0 0 0 0 0 0 0 ( 39) ARG240 0 0 0 0 0 0 0 0 0 0 0 6 2 0 0 0 0 0 0 prot.sequence PRgsalsdteraqldvmkllnvslHemsrkisrSRHciRvylkdpvsygts >1tdz_A:N-terminal_domain_of_MutM-like_DNA_repair_proteins;S13-like_H2TH_domain;Glucocorticoid_receptor-like_DNA-binding_domain; title=CRYSTAL STRUCTURE COMPLEX BETWEEN THE LACTOCOCCUS LACTIS FPG (MUTM) AND A FAPY-DG CONTAINING DNA organism=Lactococcus lactis DNA sequence DC(C16):DG(B14) DG(C17):DC(B13) DA(C18):DT(B12) DG(C19):DC(B11) DA(C20):DT(B10) DA(C21):DT(B9) DA(C22):DT(B8) DC(C23):FOX(B7) DA(C24):DT(B6) DA(C25):DT(B5) DA(C26):DT(B4) DG(C27):DC(B3) DA(C28):DT(B2) chainA ( 4) GLU5 0 0 0 0 0 0 0 7 0 0 0 0 0 ( 73) ARG74 0 0 0 0 0 4 12 0 0 0 0 0 0 ( 74) MET75 0 0 0 0 0 0 22 0 0 0 0 0 0 (108) ARG109 0 0 0 0 0 0 2 15 35 0 0 0 0 (110) PHE111 0 0 0 0 0 0 72 11 0 0 0 0 0 (171) ILE172 0 0 0 0 0 0 0 5 0 0 0 0 0 (216) SER217 0 0 0 0 0 0 0 1 0 0 0 0 0 (218) ILE219 0 0 0 0 0 0 0 13 0 0 0 0 0 (254) ARG260 0 0 0 0 0 1 12 0 0 0 0 0 0 prot.sequence elpevetvrrelekrivgqkiisieatyprmvltgfeqlkkeltgktiqgisrrgkylifeigddfrlishlRMEgkyrlatldaprekhdhltmkfadgqliyadvRkFgtwelistdqvlpyflkkkigpeptyedfdeklfreklrkstkkikpylleqtlvaglgniyvdevlwlakihpeketnqliessihllhdsiieilqkaiklggssilgstgkmqnelqvygktgekcsrcgaeiqkikvagRgthfcpvcqqk >1tez_A:Cryptochrome/photolyase_FAD-binding_domain;Cryptochrome/photolyase,_N-terminal_domain; title=COMPLEX BETWEEN DNA AND THE DNA PHOTOLYASE FROM ANACYSTIS NIDULANS organism=SYNECHOCOCCUS ELONGATUS DNA sequence DA(J9):DT(I7) DG(J10):DC(I6) DC(J11):DG(I5) DC(J12):DG(I4) DG(J13):DC(I3) DA(J14):DT(I2) chainA (231) ARG232 1 0 0 0 0 0 (282) GLU283 10 0 0 0 0 0 (285) TRP286 41 0 0 0 0 0 (289) TYR290 2 0 0 0 0 0 (401) PRO402 12 0 0 0 0 0 prot.sequence aapilfwhrrdlrlsdniglaaaraqsaqliglfcldpqilqsadmaparvaylqgclqelqqryqqagsrllllqgdpqhlipqlaqqlqaeavywnqdiepygrdrdgqvaaalktagiravqlwdqllhspdqilsgsgnpysvygpfwknwqaqpkptpvatptelvdlspeqltaiaplllselptlkqlgfdwdggfpvepgetaaiarlqefcdraiadydpqRnfpaeagtsglspalkfgaigirqawqaasaahalsrsdearnsirvwqqElaWrefYqhalyhfpsladgpyrslwqqfpwenrealftawtqaqtgypivdaamrqltetgwmhnrcrmivasfltkdliidwrrgeqffmqhlvdgdlaannggwqwsassgmdpkPlrifnpasqakkfdatatyikrwlpelrhvhpkdlisgeitpierrgypapivnhnlrqkqfkalynqlkaai >1tf3_A:beta-beta-alpha_zinc_fingers; title=TFIIIA FINGER 1-3 BOUND TO DNA, NMR, 22 STRUCTURES organism=XENOPUS LAEVIS DNA sequence DT(E1):DA(F30) DT(E2):DA(F29) DG(E3):DC(F28) DG(E4):DC(F27) DA(E5):DT(F26) DT(E6):DA(F25) DG(E7):DC(F24) DG(E8):DC(F23) DG(E9):DC(F22) DA(E10):DT(F21) DG(E11):DC(F20) DA(E12):DT(F19) DC(E13):DG(F18) DC(E14):DG(F17) DG(E15):DC(F16) chainA ( 16) ASN25 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 ( 17) LYS26 0 0 0 0 0 0 0 0 0 0 0 7 12 4 0 ( 19) TRP28 0 0 0 0 0 0 0 0 6 4 4 4 0 0 0 ( 20) LYS29 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 ( 49) HIS58 0 0 0 0 0 0 0 0 0 5 10 0 0 0 0 ( 50) HIS59 0 0 0 0 0 0 0 18 11 0 0 0 0 0 0 ( 53) ARG62 0 0 0 0 0 23 14 3 0 0 0 0 0 0 0 ( 76) THR85 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 ( 77) THR86 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 ( 79) ALA88 0 0 0 0 0 0 4 2 0 0 0 0 0 0 0 ( 80) ASN89 0 0 0 10 11 0 0 0 0 0 0 0 0 0 0 ( 83) LYS92 0 0 4 2 6 0 0 0 0 0 0 0 0 0 0 ( 87) ARG96 0 7 6 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence mkryicsfadcgaayNKnWKlqahlskhtgekpfpckeegcekgftslHHltRhslthtgeknftcdsdgcdlrfTTkANmkKhfnRfhnik >1tf6_A:C2H2_and_C2HC_zinc_fingers; title=CO-CRYSTAL STRUCTURE OF XENOPUS TFIIIA ZINC FINGER DOMAIN BOUND TO THE 5S RIBOSOMAL RNA GENE INTERNAL CONTROL REGION organism=Xenopus laevis DNA sequence DC(B2):DG(C63) DG(B3):DC(C62) DG(B4):DC(C61) DG(B5):DC(C60) DC(B6):DG(C59) DC(B7):DG(C58) DT(B8):DA(C57) DG(B9):DC(C56) DG(B10):DC(C55) DT(B11):DA(C54) DT(B12):DA(C53) DA(B13):DT(C52) DG(B14):DC(C51) DT(B15):DA(C50) DA(B16):DT(C49) DC(B17):DG(C48) DC(B18):DG(C47) DT(B19):DA(C46) DG(B20):DC(C45) DG(B21):DC(C44) DA(B22):DT(C43) DT(B23):DA(C42) DG(B24):DC(C41) DG(B25):DC(C40) DG(B26):DC(C39) DA(B27):DT(C38) DG(B28):DC(C37) DA(B29):DT(C36) DC(B30):DG(C35) DC(B31):DG(C34) chainA ( 17) LYS26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 9 10 ( 19) TRP28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 7 6 5 0 0 ( 20) LYS29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 ( 49) HIS58 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 10 3 0 0 0 0 ( 50) HIS59 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 12 1 0 0 0 0 0 ( 53) ARG62 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19 9 6 0 0 0 0 0 0 ( 77) THR86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 ( 79) ALA88 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 ( 80) ASN89 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 6 0 0 0 0 0 0 0 0 0 ( 83) LYS92 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 6 6 0 0 0 0 0 0 0 0 0 ( 87) ARG96 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 (139) LEU148 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (141) SER150 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (142) ARG151 0 0 0 0 0 0 0 2 8 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (145) ARG154 0 0 0 0 0 0 9 10 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence ykryicsfadcgaaynKnWKlqahlckhtgekpfpckeegcekgftslHHltRhslthtgeknftcdsdgcdlrftTkANmkKhfnRfhnikicvyvchfencgkafkkhnqlkvhqfshtqqlpyecphegcdkrfsLpSRlkRhekvhagypckkddscsfvgktwtlylkhvaech >1tgh_A:TATA-box_binding_protein-like; title=TATA BINDING PROTEIN (TBP)/DNA COMPLEX organism=HOMO SAPIENS DNA sequence DC(C113):DG(B112) DG(C114):DC(B111) DT(C115):DA(B110) DA(C116):DT(B109) DT(C117):DA(B108) DA(C118):DT(B107) DT(C119):DA(B106) DA(C120):DT(B105) DT(C121):DA(B104) DA(C122):DT(B103) DC(C123):DG(B102) DG(C124):DC(B101) chainA ( 9) ASN163 0 0 0 0 0 6 8 0 0 0 0 0 ( 11) VAL165 0 0 0 0 2 5 0 0 0 0 0 0 ( 39) PHE193 0 0 16 37 0 0 0 0 0 0 0 0 ( 54) LEU208 0 0 0 7 5 0 0 0 0 0 0 0 ( 56) PHE210 0 0 0 6 0 0 0 0 0 0 0 0 ( 62) VAL216 0 0 0 4 5 0 0 0 0 0 0 0 ( 64) THR218 0 0 0 0 2 1 0 0 0 0 0 0 ( 99) ASN253 0 0 0 0 0 9 6 0 0 0 0 0 (101) VAL255 0 0 0 0 0 0 6 2 0 0 0 0 (130) PHE284 0 0 0 0 0 0 0 0 22 15 0 0 (131) PRO285 0 0 0 0 0 0 0 0 0 6 0 0 (145) LEU299 0 0 0 0 0 0 0 5 0 0 0 0 (147) PHE301 0 0 0 0 0 0 0 0 7 0 0 0 (153) VAL307 0 0 0 0 0 0 0 5 0 0 0 0 (155) THR309 0 0 0 0 0 0 6 3 0 0 0 0 prot.sequence sgivpqlqNiVstvnlgckldlktialrarnaeynpkrFaavimrireprttaLiFssgkmVcTgakseeqsrlaarkyarvvqklgfpakfldfkiqNmVgscdvkfpirleglvlthqqfssyepelFPgliyrmikprivlLiFvsgkvVlTgakvraeiyeafeniypilkgfrkt >1tk0_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=T7 DNA POLYMERASE TERNARY COMPLEX WITH 8 OXO GUANOSINE AND DDCTP AT THE INSERTION SITE organism=ENTEROBACTERIA PHAGE T7 DNA sequence DT(T856):DA(P821) DG(T857):DC(P820) DG(T858):DC(P819) DC(T859):DG(P818) DA(T860):DT(P817) DC(T861):DG(P816) DT(T862):DA(P815) DG(T863):DC(P814) DG(T864):DC(P813) DC(T865):DG(P812) DC(T866):DG(P811) DG(T867):DC(P810) chainA (382) LYS394 0 0 6 1 0 0 0 0 0 0 0 0 (417) ARG429 1 0 0 0 0 0 0 0 0 0 0 0 (424) ASN436 0 1 0 0 0 0 0 0 0 0 0 0 (427) GLN439 0 8 8 0 0 0 0 0 0 0 0 0 (597) GLN615 1 0 0 0 0 0 0 0 0 0 0 0 prot.sequence mivsdieanallesvtkfhcgviydystaeyvsyrpsdfgayldaleaevargglivfhnghkydvpaltklaklqlnrefhlprencidtlvlsrlihsnlkdtdmgllrsgklpgaleawgyrlgemkgeykddfkrmleeqgeeyvdgmewwnfneemmdynvqdvvvtkallekllsdkhyfppeidftdvgyttfwsesleavdiehraawllakqerngfpfdtkaieelyvelaarrsellrkltetfgswyqpkggtemfchprtgkplpkypriktpkvggifkkpegrepceldtreyvagapytpvehvvfnpssrdhiqkklqeagwvptkytdkgapvvddevlegvrvddpekqaaidlikeylmiqKrigqsaegdkawlryvaedgkihgsvnpngavtgRathafpNlaQipgvrspygeqcraafgaehhldgitgkpwvqagidasglelrclahfmarfdngeyaheilngdihtknqiaaelptrdnaktfiygflygagdekigqivgagkergkelkkkflentpaiaalresiqqtlvessqqvkwkrrwikgldgrkvhvrsphaalNtllQsagalicklwiikteemlvekglkhgwdgdfaymawvHdeiqvgcrteeiaqvvietaqeamrwvgdhwnfrclldtegkmgpnwaich >1tk5_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=T7 DNA POLYMERASE BINARY COMPLEX WITH 8 OXO GUANOSINE IN THE TEMPLATING STRAND organism=ENTEROBACTERIA PHAGE T7 DNA sequence DC(T855):DDG(P822) DT(T856):DA(P821) DG(T857):DC(P820) DG(T858):DC(P819) DC(T859):DG(P818) DA(T860):DT(P817) DC(T861):DG(P816) DT(T862):DA(P815) DG(T863):DC(P814) DG(T864):DC(P813) DC(T865):DG(P812) chainA (384) LYS394 0 0 0 5 2 0 0 0 0 0 0 (419) ARG429 11 1 0 0 0 0 0 0 0 0 0 (426) ASN436 0 0 1 0 0 0 0 0 0 0 0 (429) GLN439 0 0 8 8 0 0 0 0 0 0 0 (520) TYR530 33 0 0 0 0 0 0 0 0 0 0 (592) GLN615 2 0 0 0 0 0 0 0 0 0 0 prot.sequence mivsdieanallesvtkfhcgviydystaeyvsyrpsdfgayldaleaevargglivfhnghkydvpaltklaklqlnrefhlprencidtlvlsrlihsnlkdtdmgllrsgklpgaleawgyrlgemkgeykddfkrmleeqgeeyvdgmewwnfneemmdynvqdvvvtkallekllsdkhyfppeidftdvgyttfwsesleavdiehraawllakqerngfpfdtkaieelyvelaarrsellrkltetfgswyqpkggtemfchprtgkplpkypriktpkvggifkkpkaqregrceldtreyvagapytpvehvvfnpssrdhiqkklqeagwvptkytdkgapvvddevlegvrvddpekqaaidlikeylmiqKrigqsaegdkawlryvaedgkihgsvnpngavtgRathafpNlaQipgvrspygeqcraafgaehhldgitgkpwvqagidasglelrclahfmarfdngeyaheilngdihtknqiaaelptrdnaktfiygflYgaigqivgagkergkelkkkflentpaiaalresiqqtlvesvkwkrrwikgldgrkvhvrsphaalntllQsagalicklwiikteemlvekglkhgwdgdfaymawvHdeiqvgcrteeiaqvvietaqeamrwvgdhwnfrclldtegkmgpnwaich >1tk8_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=T7 DNA POLYMERASE TERNARY COMPLEX WITH 8 OXO GUANOSINE AND DAMP AT THE ELONGATION SITE organism=ENTEROBACTERIA PHAGE T7 DNA sequence DA(P806):DT(T871) DC(P807):DG(T870) DG(P808):DC(T869) DA(P809):DT(T868) DC(P810):DG(T867) DG(P811):DC(T866) DG(P812):DC(T865) DC(P813):DG(T864) DC(P814):DG(T863) DA(P815):DT(T862) DG(P816):DC(T861) DT(P817):DA(T860) DG(P818):DC(T859) DC(P819):DG(T858) DC(P820):DG(T857) DA(P821):DT(T856) chainA (111) ARG111 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 (388) LYS394 0 0 0 0 0 0 0 0 0 0 0 0 3 5 0 0 (423) ARG429 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 (430) ASN436 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 (433) GLN439 0 0 0 0 0 0 0 0 0 0 0 0 0 8 9 0 (603) GLN615 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 prot.sequence mivsdieanallesvtkfhcgviydystaeyvsyrpsdfgayldaleaevargglivfhnghkydvpaltklaklqlnrefhlprencidtlvlsrlihsnlkdtdmgllRsgklpgaleawgyrlgemkgeykddfkrmleeqgeeyvdgmewwnfneemmdynvqdvvvtkallekllsdkhyfppeidftdvgyttfwsesleavdiehraawllakqerngfpfdtkaieelyvelaarrsellrkltetfgswyqpkggtemfchprtgkplpkypriktpkvggifkkpknkaqregrepceldtreyvagapytpvehvvfnpssrdhiqkklqeagwvptkytdkgapvvddevlegvrvddpekqaaidlikeylmiqKrigqsaegdkawlryvaedgkihgsvnpngavtgRathafpNlaQipgvrspygeqcraafgaehhldgitgkpwvqagidasglelrclahfmarfdngeyaheilngdihtknqiaaelptrdnaktfiygflygagdekigqivgagkergkelkkkflentpaiaalresiqqtlvessqqvkwkrrwikgldgrkvhvrsphaalntllQsagalicklwiikteemlvekglkhgwdgdfaymawvHdeiqvgcrteeiaqvvietaqeamrwvgdhwnfrclldtegkmgpnwaich >1tkd_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=T7 DNA POLYMERASE TERNARY COMPLEX WITH 8 OXO GUANOSINE AND DCMP AT THE ELONGATION SITE organism=ENTEROBACTERIA PHAGE T7 DNA sequence DT(T856):DA(P821) DG(T857):DC(P820) DG(T858):DC(P819) DC(T859):DG(P818) DA(T860):DT(P817) DC(T861):DG(P816) DT(T862):DA(P815) DG(T863):DC(P814) DG(T864):DC(P813) DC(T865):DG(P812) DC(T866):DG(P811) DG(T867):DC(P810) DT(T868):DA(P809) DC(T869):DG(P808) DG(T870):DC(P807) chainA (111) ARG111 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 (388) LYS394 0 1 7 1 0 0 0 0 0 0 0 0 0 0 0 (423) ARG429 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 (430) ASN436 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 (433) GLN439 0 9 8 0 0 0 0 0 0 0 0 0 0 0 0 (609) GLN615 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence mivsdieanallesvtkfhcgviydystaeyvsyrpsdfgayldaleaevargglivfhnghkydvpaltklaklqlnrefhlprencidtlvlsrlihsnlkdtdmgllRsgklpgaleawgyrlgemkgeykddfkrmleeqgeeyvdgmewwnfneemmdynvqdvvvtkallekllsdkhyfppeidftdvgyttfwsesleavdiehraawllakqerngfpfdtkaieelyvelaarrsellrkltetfgswyqpkggtemfchprtgkplpkypriktpkvggifkkpknkaqregrepceldtreyvagapytpvehvvfnpssrdhiqkklqeagwvptkytdkgapvvddevlegvrvddpekqaaidlikeylmiqKrigqsaegdkawlryvaedgkihgsvnpngavtgRathafpNlaQipgvrspygeqcraafgaehhldgitgkpwvqagidasglelrclahfmarfdngeyaheilngdihtknqiaaelptrdnaktfiygflygagdekigqivgagkergkelkkkflentpaiaalresiqqtlvessqwvageqqvkwkrrwikgldgrkvhvrsphaalntllQsagalicklwiikteemlvekglkhgwdgdfaymawvHdeiqvgcrteeiaqvvietaqeamrwvgdhwnfrclldtegkmgpnwaich >1tn9_A:DNA-binding_domain; title=THE SOLUTION STRUCTURE OF TN916 INTEGRASE N-TERMINAL DOMAIN/DNA COMPLEX organism=ENTEROCOCCUS FAECALIS DNA sequence DG(C114):DC(B113) DA(C115):DT(B112) DA(C116):DT(B111) DT(C117):DA(B110) DT(C118):DA(B109) DT(C119):DA(B108) DA(C120):DT(B107) DC(C121):DG(B106) DT(C122):DA(B105) DA(C123):DT(B104) DC(C124):DG(B103) DT(C125):DA(B102) DC(C126):DG(B101) chainA ( 18) ARG20 0 0 0 0 0 0 1 11 14 0 0 0 0 ( 19) LYS21 0 0 0 0 0 0 0 0 1 0 0 0 0 ( 22) ARG24 0 0 0 0 0 3 0 0 0 0 0 0 0 ( 24) LEU26 0 0 0 0 0 0 0 0 0 1 0 0 0 ( 26) LYS28 0 0 0 0 0 0 0 0 4 8 14 0 0 ( 28) ILE30 0 0 0 0 0 0 0 0 0 0 0 0 1 ( 34) PRO36 0 0 0 0 0 0 0 0 2 0 0 0 0 ( 36) PHE38 0 0 0 0 0 0 0 24 9 3 0 0 0 ( 38) TYR40 0 0 0 0 0 4 14 1 0 0 0 0 0 ( 53) ARG55 0 0 2 0 0 0 0 0 0 0 0 0 0 prot.sequence ekrrdnrgrilktgesqRKdgRyLyKyIdsfgePqFvYswklvatdrvpagkRdaislrekiaelqkdi >1tqe_PQ: title=MECHANISM OF RECRUITMENT OF CLASS II HISTONE DEACETYLASES BY MYOCYTE ENHANCER FACTOR-2 organism=HOMO SAPIENS DNA sequence DG(D3):DC(C16) DC(D4):DG(C15) DT(D5):DA(C14) DT(D6):DA(C13) DA(D7):DT(C12) DT(D8):DA(C11) DA(D9):DT(C10) DA(D10):DT(C9) DA(D11):DT(C8) DT(D12):DA(C7) DA(D13):DT(C6) DG(D14):DC(C5) DC(D15):DG(C4) DT(D16):DA(C3) chainP ( 2) ARG3 0 0 4 12 7 0 0 0 0 0 0 0 0 0 ( 22) LYS23 0 0 6 7 0 0 0 0 0 0 0 0 0 0 chainQ ( 2) ARG3 0 0 0 0 0 0 0 0 0 2 13 10 0 0 ( 22) LYS23 0 0 0 0 0 0 0 0 0 0 7 5 1 0 prot.sequence gRkkiqisrildqrnrqvtftKrkfglmkkayelsvlcdceialiifnsanrlfqyastdmdrvllkyteysephesrtntdiletlkrr/gRkkiqisrildqrnrqvtftKrkfglmkkayelsvlcdceialiifnsanrlfqyastdmdrvllkyteysephesrtntdiletlkrr >1tqe_RS: title=MECHANISM OF RECRUITMENT OF CLASS II HISTONE DEACETYLASES BY MYOCYTE ENHANCER FACTOR-2 organism=HOMO SAPIENS DNA sequence DG(F3):DC(E16) DC(F4):DG(E15) DT(F5):DA(E14) DT(F6):DA(E13) DA(F7):DT(E12) DT(F8):DA(E11) DA(F9):DT(E10) DA(F10):DT(E9) DA(F11):DT(E8) DT(F12):DA(E7) DA(F13):DT(E6) DG(F14):DC(E5) DC(F15):DG(E4) DT(F16):DA(E3) DT(F17):DA(E2) chainR ( 2) ARG3 0 0 3 12 6 0 0 0 0 0 0 0 0 0 0 ( 22) LYS23 0 0 5 7 0 0 0 0 0 0 0 0 0 0 0 chainS ( 2) ARG3 0 0 0 0 0 0 0 0 0 2 13 10 0 0 0 ( 22) LYS23 0 0 0 0 0 0 0 0 0 0 7 5 1 0 0 prot.sequence gRkkiqisrildqrnrqvtftKrkfglmkkayelsvlcdceialiifnsanrlfqyastdmdrvllkyteysephesrtntdiletlkrr/gRkkiqisrildqrnrqvtftKrkfglmkkayelsvlcdceialiifnsanrlfqyastdmdrvllkyteysephesrtntdiletlkrr >1tqe_S:SRF-like; title=MECHANISM OF RECRUITMENT OF CLASS II HISTONE DEACETYLASES BY MYOCYTE ENHANCER FACTOR-2 organism=HOMO SAPIENS DNA sequence DG(F3):DC(E16) DC(F4):DG(E15) DT(F5):DA(E14) DT(F6):DA(E13) DA(F7):DT(E12) DT(F8):DA(E11) DA(F9):DT(E10) DA(F10):DT(E9) DA(F11):DT(E8) DT(F12):DA(E7) DA(F13):DT(E6) DG(F14):DC(E5) DC(F15):DG(E4) DT(F16):DA(E3) DT(F17):DA(E2) chainS ( 2) ARG3 0 0 0 0 0 0 0 0 0 2 13 10 0 0 0 ( 22) LYS23 0 0 0 0 0 0 0 0 0 0 7 5 1 0 0 prot.sequence gRkkiqisrildqrnrqvtftKrkfglmkkayelsvlcdceialiifnsanrlfqyastdmdrvllkyteysephesrtntdiletlkrr >1tro_AG: title=CRYSTAL STRUCTURE OF TRP REPRESSOR OPERATOR COMPLEX AT ATOMIC RESOLUTION organism=ESCHERICHIA COLI STR. K12 SUBSTR. DNA sequence DG(J2):DC(I19) DT(J3):DA(I18) DA(J4):DT(I17) DC(J5):DG(I16) DT(J6):DA(I15) DA(J7):DT(I14) DG(J8):DC(I13) DT(J9):DA(I12) DT(J10):DA(I11) DA(J11):DT(I10) DA(J12):DT(I9) DC(J13):DG(I8) DT(J14):DA(I7) DA(J15):DT(I6) DG(J16):DC(I5) DT(J17):DA(I4) DA(J18):DT(I3) DC(J19):DG(I2) DT(L1):DT(I1) DG(L2):DC(K19) DT(L3):DA(K18) DA(L4):DT(K17) DC(L5):DG(K16) DT(L6):DA(K15) DA(L7):DT(K14) DG(L8):DC(K13) DT(L9):DA(K12) DT(L10):DA(K11) DA(L11):DT(K10) DA(L12):DT(K9) DC(L13):DG(K8) DT(L14):DA(K7) DA(L15):DT(K6) DG(L16):DC(K5) DT(L17):DA(K4) DA(L18):DT(K3) DC(L19):DG(K2) chainA ( 64) GLN68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 65) ARG69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 12 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 75) ILE79 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 76) ALA80 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 77) THR81 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 79) THR83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainG ( 64) GLN68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 65) ARG69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 8 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 75) ILE79 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 76) ALA80 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 ( 77) THR81 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence spysaamaeerhqewlrfvdllknayqndlhlpllnlmltpderealgtrvriveellrgemsQRelKnelgagIATiTrgsnslkaapvelrqwleevllksd/spysaamaeerhqewlrfvdllknayqndlhlpllnlmltpderealgtrvriveellrgemsQRelKnelgagIATiTrgsnslkaapvelrqwleevll >1tro_C:TrpR-like; title=CRYSTAL STRUCTURE OF TRP REPRESSOR OPERATOR COMPLEX AT ATOMIC RESOLUTION organism=? DNA sequence DG(I2):DC(J19) DT(I3):DA(J18) DA(I4):DT(J17) DC(I5):DG(J16) DT(I6):DA(J15) DA(I7):DT(J14) DG(I8):DC(J13) DT(I9):DA(J12) DT(I10):DA(J11) DA(I11):DT(J10) DA(I12):DT(J9) DC(I13):DG(J8) DT(I14):DA(J7) DA(I15):DT(J6) DG(I16):DC(J5) DT(I17):DA(J4) DA(I18):DT(J3) DC(I19):DG(J2) chainC ( 59) GLN68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 ( 60) ARG69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 11 ( 70) ILE79 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 2 2 0 ( 71) ALA80 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 ( 72) THR81 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 74) THR83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 prot.sequence amaeerhqewlrfvdllknayqndlhlpllnlmltpderealgtrvriveellrgemsQRelKnelgagIATiTrgsnslkaapvelrqwleevllksd >1trr_A:TrpR-like; title=TANDEM BINDING IN CRYSTALS OF A TRP REPRESSOR/OPERATOR HALF-SITE COMPLEX organism=ESCHERICHIA COLI DNA sequence DA(I2):DT(C17) DG(I3):DC(C16) DC(I4):DG(C15) DG(I5):DC(C14) DT(I6):DA(C13) DA(I7):DT(C12) DC(I8):DG(C11) DT(I9):DA(C10) DA(I10):DT(C9) DG(I11):DC(C8) DT(I12):DA(C7) DA(I13):DT(C6) DC(I14):DG(C5) DG(I15):DC(C4) DC(I16):DG(C3) DT(I17):DA(C2) chainA ( 1) ALA2 0 0 0 0 0 0 0 0 0 0 0 0 4 3 0 0 ( 67) GLN68 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 ( 68) ARG69 0 0 9 9 0 0 0 0 0 0 0 0 0 0 0 0 ( 78) ILE79 0 0 0 0 4 2 5 0 0 0 0 0 0 0 0 0 ( 79) ALA80 0 0 0 0 0 0 1 1 2 0 0 0 0 0 0 0 ( 80) THR81 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 ( 82) THR83 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 ( 83) ARG84 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 prot.sequence AqqspysaamaeqrheewlrfvdllknayqndlhlpllnlmltpderealgtrvriveellrgemsQRelknelgagIATiTRgsnslkaapvelrqwleevll >1trr_AB: title=TANDEM BINDING IN CRYSTALS OF A TRP REPRESSOR/OPERATOR HALF-SITE COMPLEX organism=ESCHERICHIA COLI DNA sequence DA(C2):DT(I17) DG(C3):DC(I16) DC(C4):DG(I15) DG(C5):DC(I14) DT(C6):DA(I13) DA(C7):DT(I12) DC(C8):DG(I11) DT(C9):DA(I10) DA(C10):DT(I9) DG(C11):DC(I8) DT(C12):DA(I7) DA(C13):DT(I6) DC(C14):DG(I5) DG(C15):DC(I4) DC(C16):DG(I3) DT(C17):DA(I2) chainA ( 1) ALA2 0 0 3 4 0 0 0 0 0 0 0 0 0 0 0 0 ( 67) GLN68 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 ( 68) ARG69 0 0 0 0 0 0 0 0 0 0 0 0 9 9 0 0 ( 78) ILE79 0 0 0 0 0 0 0 0 0 5 2 4 0 0 0 0 ( 79) ALA80 0 0 0 0 0 0 0 2 1 1 0 0 0 0 0 0 ( 80) THR81 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 82) THR83 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 ( 83) ARG84 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 chainB ( 79) ALA80 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 80) THR81 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence AqqspysaamaeqrheewlrfvdllknayqndlhlpllnlmltpderealgtrvriveellrgemsQRelknelgagIATiTRgsnslkaapvelrqwleevll/aqqspysaamaeqrheewlrfvdllknayqndlhlpllnlmltpderealgtrvriveellrgemsqrelknelgagiATitrgsnslkaapvelrqwleevll >1trr_DEGH: title=TANDEM BINDING IN CRYSTALS OF A TRP REPRESSOR/OPERATOR HALF-SITE COMPLEX organism=ESCHERICHIA COLI DNA sequence DA(L2):DT(F17) DG(L3):DC(F16) DC(L4):DG(F15) DG(L5):DC(F14) DT(L6):DA(F13) DA(L7):DT(F12) DC(L8):DG(F11) DT(L9):DA(F10) DA(L10):DT(F9) DG(L11):DC(F8) DT(L12):DA(F7) DA(L13):DT(F6) DC(L14):DG(F5) DG(L15):DC(F4) DC(L16):DG(F3) DT(L17):DA(F2) DA(I2):DT(C17) DG(I3):DC(C16) DC(I4):DG(C15) DG(I5):DC(C14) DT(I6):DA(C13) DA(I7):DT(C12) DC(I8):DG(C11) DT(I9):DA(C10) DA(I10):DT(C9) DG(I11):DC(C8) DT(I12):DA(C7) DA(I13):DT(C6) DC(I14):DG(C5) DG(I15):DC(C4) DC(I16):DG(C3) DT(I17):DA(C2) chainD ( 1) ALA2 0 0 0 0 0 0 0 0 0 0 0 0 4 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 67) GLN68 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 68) ARG69 0 0 9 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 78) ILE79 0 0 0 0 4 2 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 79) ALA80 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 80) THR81 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 82) THR83 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 83) ARG84 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainE ( 67) GLN68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 ( 68) ARG69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 20 9 0 0 0 0 0 0 0 0 0 0 ( 71) LYS72 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 78) ILE79 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 2 2 0 0 0 0 0 0 0 0 0 0 0 0 ( 79) ALA80 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 80) THR81 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 82) THR83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 chainG ( 1) ALA2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 4 0 0 0 0 0 0 0 0 0 0 0 0 ( 67) GLN68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 ( 68) ARG69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 10 0 0 ( 78) ILE79 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 2 5 0 0 0 0 ( 79) ALA80 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 ( 80) THR81 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 82) THR83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 ( 83) ARG84 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 chainH ( 68) ARG69 0 0 0 0 0 0 0 0 0 0 12 21 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 71) LYS72 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 78) ILE79 0 0 0 0 0 0 0 0 0 0 0 0 1 2 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 79) ALA80 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 80) THR81 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence AqqspysaamaeqrheewlrfvdllknayqndlhlpllnlmltpderealgtrvriveellrgemsQRelknelgagIATiTRgsnslkaapvelrqwleevll/aqqspysaamaeqrheewlrfvdllknayqndlhlpllnlmltpderealgtrvriveellrgemsQRelKnelgagIATiTrgsnslkaapvelrqwleevll/AqqspysaamaeqrheewlrfvdllknayqndlhlpllnlmltpderealgtrvriveellrgemsQRelknelgagIATiTRgsnslkaapvelrqwleevll/aqqspysaamaeqrheewlrfvdllknayqndlhlpllnlmltpderealgtrvriveellrgemsqRelKnelgagIATitrgsnslkaapvelrqwleevll >1trr_JK: title=TANDEM BINDING IN CRYSTALS OF A TRP REPRESSOR/OPERATOR HALF-SITE COMPLEX organism=ESCHERICHIA COLI DNA sequence DA(F2):DT(L17) DG(F3):DC(L16) DC(F4):DG(L15) DG(F5):DC(L14) DT(F6):DA(L13) DA(F7):DT(L12) DC(F8):DG(L11) DT(F9):DA(L10) DA(F10):DT(L9) DG(F11):DC(L8) DT(F12):DA(L7) DA(F13):DT(L6) DC(F14):DG(L5) DG(F15):DC(L4) DC(F16):DG(L3) DT(F17):DA(L2) chainJ ( 1) ALA2 0 0 0 0 0 0 0 0 0 0 0 0 4 3 0 0 ( 67) GLN68 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 ( 68) ARG69 0 0 10 10 0 0 0 0 0 0 0 0 0 0 0 0 ( 78) ILE79 0 0 0 0 5 2 5 0 0 0 0 0 0 0 0 0 ( 79) ALA80 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 ( 80) THR81 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 ( 82) THR83 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 ( 83) ARG84 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 chainK ( 79) ALA80 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 ( 80) THR81 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 prot.sequence AqqspysaamaeqrheewlrfvdllknayqndlhlpllnlmltpderealgtrvriveellrgemsQRelknelgagIATiTRgsnslkaapvelrqwleevll/aqqspysaamaeqrheewlrfvdllknayqndlhlpllnlmltpderealgtrvriveellrgemsqrelknelgagiATitrgsnslkaapvelrqwleevll >1tsr_B:p53-like_transcription_factors; title=P53 CORE DOMAIN IN COMPLEX WITH DNA organism=Homo sapiens DNA sequence DT(E2):DA(F21) DT(E3):DA(F20) DC(E4):DG(F19) DC(E5):DG(F18) DT(E6):DA(F17) DA(E7):DT(F16) DG(E8):DC(F15) DA(E9):DT(F14) DC(E10):DG(F13) DT(E11):DA(F12) DT(E12):DA(F11) DG(E13):DC(F10) DC(E14):DG(F9) DC(E15):DG(F8) DC(E16):DG(F7) DA(E17):DT(F6) DA(E18):DT(F5) DT(E19):DA(F4) DT(E20):DA(F3) DA(E21):DT(F2) chainB ( 25) LYS120 0 0 0 0 0 0 0 0 0 0 0 0 7 11 13 0 0 0 0 0 (153) ARG248 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 (181) ALA276 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 (182) CYS277 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 (185) ARG280 0 0 0 0 0 0 0 0 0 0 10 14 7 0 0 0 0 0 0 0 prot.sequence svpsqktyqgsygfrlgflhsgtaKsvtctyspalnkmfcqlaktcpvqlwvdstpppgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvvvpyeppevgsdcttihynymcnsscmggmnRrpiltiitledssgnllgrnsfevrvcACpgRdrrteeenl >1tsr_BC: title=P53 CORE DOMAIN IN COMPLEX WITH DNA organism=Homo sapiens DNA sequence DT(F2):DA(E21) DA(F3):DT(E20) DA(F4):DT(E19) DT(F5):DA(E18) DT(F6):DA(E17) DG(F7):DC(E16) DG(F8):DC(E15) DG(F9):DC(E14) DC(F10):DG(E13) DA(F11):DT(E12) DA(F12):DT(E11) DG(F13):DC(E10) DT(F14):DA(E9) DC(F15):DG(E8) DT(F16):DA(E7) DA(F17):DT(E6) DG(F18):DC(E5) DG(F19):DC(E4) DA(F20):DT(E3) DA(F21):DT(E2) chainB ( 25) LYS120 0 0 0 0 0 13 11 7 0 0 0 0 0 0 0 0 0 0 0 0 (153) ARG248 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 (181) ALA276 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 (182) CYS277 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 (185) ARG280 0 0 0 0 0 0 0 7 14 10 0 0 0 0 0 0 0 0 0 0 chainC (186) ARG280 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 prot.sequence svpsqktyqgsygfrlgflhsgtaKsvtctyspalnkmfcqlaktcpvqlwvdstpppgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvvvpyeppevgsdcttihynymcnsscmggmnRrpiltiitledssgnllgrnsfevrvcACpgRdrrteeenl/ssvpsqktyqgsygfrlgflhsgtaksvtctyspalnkmfcqlaktcpvqlwvdstpppgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvvvpyeppevgsdcttihynymcnsscmggmnrrpiltiitledssgnllgrnsfevrvcacpgRdrrteeenl >1ttu_A:DNA-binding_protein_LAG-1_CSL;p53-like_transcription_factors;E_set_domains; title=CRYSTAL STRUCTURE OF CSL BOUND TO DNA organism=Caenorhabditis elegans DNA sequence DT(C3):DA(B15) DC(C4):DG(B14) DT(C5):DA(B13) DT(C6):DA(B12) DT(C7):DA(B11) DC(C8):DG(B10) DC(C9):DG(B9) DC(C10):DG(B8) DA(C11):DT(B7) DC(C12):DG(B6) DA(C13):DT(B5) DG(C14):DC(B4) DT(C15):DA(B3) chainA ( 35) TYR229 0 0 0 0 11 1 0 0 0 0 0 0 0 ( 38) GLU232 0 0 0 0 0 0 0 1 3 0 0 0 0 ( 40) ARG234 0 0 0 0 0 0 2 12 12 0 0 0 0 (142) SER367 0 0 0 4 2 0 0 0 0 0 0 0 0 (143) LYS368 0 0 0 2 12 10 1 0 0 0 0 0 0 (175) SER400 0 0 0 0 0 0 0 0 2 1 0 0 0 (176) GLN401 0 0 0 0 0 0 0 0 0 4 5 1 0 prot.sequence vqsltsdrmidflsnkekyecvisifhakvaqksYgnEkRffcpppciyligqgwklkkdrvaqlykteqqatelvayigigsdtserqqldfpniydycaaktlyisdsdkrkyfdlnaqffygcgmeiggfvsqrikviSKpskkkqsmkntdckylciasgtkvalfnrlrSQtvstrylhvegnafhasstkwgaftihlfdderglqetdnfavrdgfvyygsvvklvdsvtgialprlrirkvdkqqvildascseepvsqlhkcafqmidnelvylclshdkiiqhqatainehrhqindgaawtiistdkaeyrffeamgqvanpispcpvvgslevdghgeasrvelhgrdfkpnlkvwfgatpvettfrseeslhcsippvsqvrneqthwmftnrttgdvevpislvrddgvvyssgltfsyks >1tup_B:p53-like_transcription_factors; title=TUMOR SUPPRESSOR P53 COMPLEXED WITH DNA organism=Homo sapiens DNA sequence DT(E1002):DA(F1121) DT(E1003):DA(F1120) DC(E1004):DG(F1119) DC(E1005):DG(F1118) DT(E1006):DA(F1117) DA(E1007):DT(F1116) DG(E1008):DC(F1115) DA(E1009):DT(F1114) DC(E1010):DG(F1113) DT(E1011):DA(F1112) DT(E1012):DA(F1111) DG(E1013):DC(F1110) DC(E1014):DG(F1109) DC(E1015):DG(F1108) DC(E1016):DG(F1107) DA(E1017):DT(F1106) DA(E1018):DT(F1105) DT(E1019):DA(F1104) DT(E1020):DA(F1103) DA(E1021):DT(F1102) chainB ( 25) LYS120 0 0 0 0 0 0 0 0 0 0 0 0 7 13 13 0 0 0 0 0 (153) ARG248 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 (181) ALA276 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 (182) CYS277 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 (185) ARG280 0 0 0 0 0 0 0 0 0 0 10 14 7 0 0 0 0 0 0 0 prot.sequence svpsqktyqgsygfrlgflhsgtaKsvtctyspalnkmfcqlaktcpvqlwvdstpppgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvvvpyeppevgsdcttihynymcnsscmggmnRrpiltiitledssgnllgrnsfevrvcACpgRdrrteeenl >1tup_BC: title=TUMOR SUPPRESSOR P53 COMPLEXED WITH DNA organism=Homo sapiens DNA sequence DT(F1102):DA(E1021) DA(F1103):DT(E1020) DA(F1104):DT(E1019) DT(F1105):DA(E1018) DT(F1106):DA(E1017) DG(F1107):DC(E1016) DG(F1108):DC(E1015) DG(F1109):DC(E1014) DC(F1110):DG(E1013) DA(F1111):DT(E1012) DA(F1112):DT(E1011) DG(F1113):DC(E1010) DT(F1114):DA(E1009) DC(F1115):DG(E1008) DT(F1116):DA(E1007) DA(F1117):DT(E1006) DG(F1118):DC(E1005) DG(F1119):DC(E1004) DA(F1120):DT(E1003) DA(F1121):DT(E1002) chainB ( 25) LYS120 0 0 0 0 0 13 13 7 0 0 0 0 0 0 0 0 0 0 0 0 (153) ARG248 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 (181) ALA276 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 (182) CYS277 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 (185) ARG280 0 0 0 0 0 0 0 7 14 10 0 0 0 0 0 0 0 0 0 0 chainC (186) ARG280 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 prot.sequence svpsqktyqgsygfrlgflhsgtaKsvtctyspalnkmfcqlaktcpvqlwvdstpppgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvvvpyeppevgsdcttihynymcnsscmggmnRrpiltiitledssgnllgrnsfevrvcACpgRdrrteeenl/ssvpsqktyqgsygfrlgflhsgtaksvtctyspalnkmfcqlaktcpvqlwvdstpppgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvvvpyeppevgsdcttihynymcnsscmggmnrrpiltiitledssgnllgrnsfevrvcacpgRdrrteeenl >1u0c_A:Homing_endonucleases; title=Y33C MUTANT OF HOMING ENDONUCLEASE I-CREI organism=Chlamydomonas reinhardtii DNA sequence DG(C501):DC(D574) DC(C502):DG(D573) DT(C503):DA(D572) DA(C504):DT(D571) DA(C505):DT(D570) DA(C506):DT(D569) DC(C507):DG(D568) DG(C508):DC(D567) DT(C509):DA(D566) DC(C510):DG(D565) DG(C511):DC(D564) DT(C512):DA(D563) DG(C513):DC(D562) DA(C514):DT(D561) DG(C515):DC(D560) DA(C516):DT(D559) DC(C517):DG(D558) DA(C518):DT(D557) DG(C519):DC(D556) DT(C520):DA(D555) DT(C521):DA(D554) DA(C522):DT(D553) DC(C523):DG(D552) DG(C524):DC(D551) chainA ( 21) SER22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 25) GLN26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 2 0 0 0 0 0 0 ( 27) LYS28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 0 ( 29) ASN30 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 1 0 0 ( 31) SER32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 ( 32) CYS33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 ( 37) GLN38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 10 0 0 ( 43) GLN44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 6 1 0 0 0 0 0 0 0 ( 45) THR46 0 0 0 0 0 0 0 0 0 0 0 0 0 2 5 0 0 0 0 0 0 0 0 0 ( 65) TYR66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 ( 67) ARG68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 14 13 0 0 0 0 0 0 ( 69) ARG70 0 0 0 0 0 0 0 0 0 0 0 0 0 4 13 24 0 0 0 0 0 0 0 0 ( 72) VAL73 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 (138) LYS139 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 (139) THR140 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 prot.sequence ntkynkefllylagfvdgdgSiiaQiKpNqSCkfkhQlsltfQvTektqrrwfldklvdeigvgYvRdRgsVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld >1u0c_AB:Homing_endonucleases; title=Y33C MUTANT OF HOMING ENDONUCLEASE I-CREI organism=Chlamydomonas reinhardtii DNA sequence DC(D551):DG(C524) DG(D552):DC(C523) DT(D553):DA(C522) DA(D554):DT(C521) DA(D555):DT(C520) DC(D556):DG(C519) DT(D557):DA(C518) DG(D558):DC(C517) DT(D559):DA(C516) DC(D560):DG(C515) DT(D561):DA(C514) DC(D562):DG(C513) DA(D563):DT(C512) DC(D564):DG(C511) DG(D565):DC(C510) DA(D566):DT(C509) DC(D567):DG(C508) DG(D568):DC(C507) DT(D569):DA(C506) DT(D570):DA(C505) DT(D571):DA(C504) DA(D572):DT(C503) DG(D573):DC(C502) DC(D574):DG(C501) chainA ( 21) SER22 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) GLN26 0 0 0 0 0 0 2 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 27) LYS28 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) ASN30 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 31) SER32 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 32) CYS33 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 37) GLN38 0 0 10 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 43) GLN44 0 0 0 0 0 0 0 1 6 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 45) THR46 0 0 0 0 0 0 0 0 0 5 2 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 65) TYR66 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 67) ARG68 0 0 0 0 0 0 13 14 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 69) ARG70 0 0 0 0 0 0 0 0 24 13 4 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 72) VAL73 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 (138) LYS139 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 (139) THR140 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 21) SER322 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 ( 23) ILE324 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 25) GLN326 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3 0 0 0 0 0 0 ( 27) LYS328 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 0 0 0 0 0 ( 29) ASN330 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 ( 31) SER332 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 4 ( 32) CYS333 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 ( 37) GLN338 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 10 0 0 ( 43) GLN344 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4 1 0 0 0 0 0 0 0 ( 45) THR346 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 ( 65) TYR366 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 ( 67) ARG368 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 10 11 0 0 0 0 0 0 ( 69) ARG370 0 0 0 0 0 0 0 0 0 0 0 0 0 4 9 13 0 0 0 0 0 0 0 0 ( 72) VAL373 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 (138) LYS439 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 0 0 0 0 0 0 0 (139) THR440 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 2 0 0 0 0 0 0 0 0 prot.sequence ntkynkefllylagfvdgdgSiiaQiKpNqSCkfkhQlsltfQvTektqrrwfldklvdeigvgYvRdRgsVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld/ntkynkefllylagfvdgdgSiIaQiKpNqSCkfkhQlsltfQvTektqrrwfldklvdeigvgYvRdRgsVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld >1u0d_A:Homing_endonucleases; title=Y33H MUTANT OF HOMING ENDONUCLEASE I-CREI organism=Chlamydomonas reinhardtii DNA sequence DG(C501):DC(D574) DC(C502):DG(D573) DG(C503):DC(D572) DA(C504):DT(D571) DA(C505):DT(D570) DC(C507):DT(D569) DG(C508):DC(D567) DT(C509):DA(D566) DC(C510):DG(D565) DG(C511):DC(D564) DT(C512):DA(D563) DG(C513):DC(D562) DA(C514):DT(D561) DG(C515):DC(D560) DA(C516):DT(D559) DC(C517):DG(D558) DA(C518):DT(D557) DG(C519):DC(D556) DT(C520):DA(D555) DT(C521):DA(D554) DC(C522):DG(D553) DC(C523):DG(D552) DG(C524):DC(D551) chainA ( 21) SER22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 ( 23) ILE24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 2 0 0 0 0 0 0 0 ( 25) GLN26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 6 0 0 0 0 0 0 ( 27) LYS28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 7 2 0 0 0 0 ( 29) ASN30 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 1 0 0 ( 31) SER32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 1 ( 32) HIS33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 13 0 ( 37) GLN38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 8 0 0 ( 43) GLN44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 ( 45) THR46 0 0 0 0 0 0 0 0 0 0 0 0 1 5 0 0 0 0 0 0 0 0 0 ( 65) TYR66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 67) ARG68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 12 21 0 0 0 0 0 0 ( 69) ARG70 0 0 0 0 0 0 0 0 0 0 0 0 0 15 9 0 0 0 0 0 0 0 0 ( 72) VAL73 0 0 0 0 0 0 0 0 0 0 0 1 6 0 0 0 0 0 0 0 0 0 0 (138) LYS139 0 0 0 0 0 0 0 0 0 0 0 0 4 2 0 0 0 0 0 0 0 0 0 (139) THR140 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 prot.sequence ntkynkefllylagfvdgdgSiIaQiKpNqSHkfkhQlsltfQvTektqrrwfldklvdeigvgYvRdRgsVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld >1u0d_AB:Homing_endonucleases; title=Y33H MUTANT OF HOMING ENDONUCLEASE I-CREI organism=Chlamydomonas reinhardtii DNA sequence DC(D551):DG(C524) DG(D552):DC(C523) DG(D553):DC(C522) DA(D554):DT(C521) DA(D555):DT(C520) DC(D556):DG(C519) DT(D557):DA(C518) DG(D558):DC(C517) DT(D559):DA(C516) DC(D560):DG(C515) DT(D561):DA(C514) DC(D562):DG(C513) DA(D563):DT(C512) DC(D564):DG(C511) DG(D565):DC(C510) DA(D566):DT(C509) DC(D567):DG(C508) DT(D569):DC(C507) DT(D570):DA(C505) DT(D571):DA(C504) DC(D572):DG(C503) DG(D573):DC(C502) DC(D574):DG(C501) chainA ( 21) SER22 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 23) ILE24 0 0 0 0 0 0 0 2 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 25) GLN26 0 0 0 0 0 0 6 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 27) LYS28 0 0 0 0 2 7 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) ASN30 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 31) SER32 1 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 32) HIS33 0 13 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 37) GLN38 0 0 8 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 43) GLN44 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 45) THR46 0 0 0 0 0 0 0 0 0 5 1 0 0 0 0 0 0 0 0 0 0 0 0 ( 65) TYR66 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 67) ARG68 0 0 0 0 0 0 21 12 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 69) ARG70 0 0 0 0 0 0 0 0 9 15 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 72) VAL73 0 0 0 0 0 0 0 0 0 0 6 1 0 0 0 0 0 0 0 0 0 0 0 (138) LYS139 0 0 0 0 0 0 0 0 0 2 4 0 0 0 0 0 0 0 0 0 0 0 0 (139) THR140 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 23) ILE324 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 7 0 0 0 0 0 0 ( 25) GLN326 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 ( 27) LYS328 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 0 ( 29) ASN330 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 ( 31) SER332 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 6 1 ( 32) HIS333 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 11 0 ( 37) GLN338 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 9 0 0 ( 43) GLN344 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 6 1 0 0 0 0 0 0 ( 45) THR346 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 ( 65) TYR366 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 ( 67) ARG368 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 13 5 0 0 0 0 0 ( 69) ARG370 0 0 0 0 0 0 0 0 0 0 0 0 0 3 10 16 0 0 0 0 0 0 0 ( 72) VAL373 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 (139) THR440 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 prot.sequence ntkynkefllylagfvdgdgSiIaQiKpNqSHkfkhQlsltfQvTektqrrwfldklvdeigvgYvRdRgsVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld/ntkynkefllylagfvdgdgsiIaQiKpNqSHkfkhQlsltfQvTektqrrwfldklvdeigvgYvRdRgsVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndskTrkttsetvravld >1u35_ABCDEFGH:Histone-fold;PH_domain-like;lambda_repressor-like_DNA-binding_domains;p53-like_transcription_factors;Nucleic_acid-binding_proteins;P-loop_containing_nucleoside_triphosphate_hydrolases; title=CRYSTAL STRUCTURE OF THE NUCLEOSOME CORE PARTICLE CONTAINING THE HISTONE DOMAIN OF MACROH2A organism=HOMO SAPIENS / MUS MUSCULUS DNA sequence DA(J146):DT(I145) DT(J147):DA(I144) DC(J148):DG(I143) DA(J149):DT(I142) DA(J150):DT(I141) DT(J151):DA(I140) DA(J152):DT(I139) DT(J153):DA(I138) DC(J154):DG(I137) DC(J155):DG(I136) DA(J156):DT(I135) DC(J157):DG(I134) DC(J158):DG(I133) DT(J159):DA(I132) DG(J160):DC(I131) DC(J161):DG(I130) DA(J162):DT(I129) DG(J163):DC(I128) DA(J164):DT(I127) DT(J165):DA(I126) DT(J166):DA(I125) DC(J167):DG(I124) DT(J168):DA(I123) DA(J169):DT(I122) DC(J170):DG(I120) DA(J172):DT(I119) DA(J173):DT(I118) DA(J174):DT(I117) DA(J175):DT(I116) DG(J176):DC(I115) DT(J177):DA(I114) DG(J178):DC(I113) DT(J179):DA(I112) DA(J180):DT(I111) DT(J181):DA(I110) DT(J182):DA(I109) DT(J183):DA(I108) DG(J184):DC(I107) DG(J185):DC(I106) DA(J186):DT(I105) DA(J187):DT(I104) DA(J188):DT(I103) DC(J189):DG(I102) DT(J190):DA(I101) DG(J191):DC(I100) DC(J192):DG(I99) DT(J193):DA(I98) DC(J194):DG(I97) DC(J195):DG(I96) DA(J196):DT(I95) DT(J197):DA(I94) DC(J198):DG(I93) DA(J199):DT(I92) DA(J200):DT(I91) DA(J201):DT(I90) DA(J202):DT(I89) DG(J203):DC(I88) DG(J204):DC(I87) DC(J205):DG(I86) DA(J206):DT(I85) DT(J207):DA(I84) DG(J208):DC(I83) DT(J209):DA(I82) DT(J210):DA(I81) DC(J211):DG(I80) DA(J212):DT(I79) DG(J213):DC(I78) DC(J214):DG(I77) DG(J215):DC(I76) DG(J216):DC(I75) DA(J217):DT(I74) DT(J218):DA(I73) DT(J219):DA(I72) DC(J220):DG(I71) DC(J221):DG(I70) DG(J222):DC(I69) DC(J223):DG(I68) DT(J224):DA(I67) DG(J225):DC(I66) DA(J226):DT(I65) DA(J227):DT(I64) DC(J228):DG(I63) DA(J229):DT(I62) DT(J230):DA(I61) DG(J231):DC(I60) DC(J232):DG(I59) DC(J233):DG(I58) DT(J234):DA(I57) DT(J235):DA(I56) DT(J236):DA(I55) DT(J237):DA(I54) DG(J238):DC(I53) DA(J239):DT(I52) DT(J240):DA(I51) DG(J241):DC(I50) DG(J242):DC(I49) DA(J243):DT(I48) DG(J244):DC(I47) DC(J245):DG(I46) DA(J246):DT(I45) DG(J247):DC(I44) DT(J248):DA(I43) DT(J249):DA(I42) DT(J250):DA(I41) DC(J251):DG(I40) DC(J252):DG(I39) DA(J253):DT(I38) DA(J254):DT(I37) DA(J255):DT(I36) DT(J256):DA(I35) DA(J257):DT(I34) DC(J258):DG(I33) DA(J259):DT(I32) DC(J260):DG(I31) DT(J261):DA(I30) DT(J262):DA(I29) DT(J263):DA(I28) DT(J264):DA(I27) DG(J265):DC(I25) DT(J267):DA(I24) DA(J268):DT(I23) DG(J269):DC(I22) DA(J270):DT(I21) DA(J271):DT(I20) DT(J272):DA(I19) DC(J273):DG(I18) DT(J274):DA(I17) DG(J275):DC(I16) DC(J276):DG(I15) DA(J277):DT(I14) DG(J278):DC(I13) DG(J279):DC(I12) DT(J280):DA(I11) DG(J281):DC(I10) DG(J282):DC(I9) DA(J283):DT(I8) DT(J284):DA(I7) DA(J285):DT(I6) DT(J286):DA(I5) DT(J287):DA(I4) DG(J288):DC(I3) DA(J289):DT(I2) DT(J290):DA(I1) chainA ( 2) HIS439 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 3) ARG440 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 28) LEU465 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) ARG483 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 22) ARG45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainC ( 1) LYS814 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) ARG842 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainD chainE ( 2) HIS639 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 ( 3) ARG640 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 4) TYR641 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ( 28) LEU665 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 46) ARG683 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainF chainG ( 1) LYS1014 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) ARG1042 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainH ( 4) ARG1430 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 10) ILE1436 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence pHRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaceaylvglfedtnlcaihakrvtimpkdiqlarrirgera/dniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg/KtsrsakagvifpvgrmlryikkghpkyRigvgapvymaavleyltaeilelavnaardnkkgrvtprhillavandeelnqllkgvtiasggvlpnihpellakk/RkesysiyvykvlkqvhpdtgisskamgImnsfvndiferiaseasrlahynkrstitsrevqtavrlllpgelakhavsegtkavtkytssk/pHRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaceaylvglfedtnlcaihakrvtimpkdiqlarrirgera/kVLRdniqgitkpairrlarrggvkriSgliyeetrgvlkvflenVirdavtytehakrktvtamdvvyalkrqgrtlygfgg/KtsrsakagvifpvgrmlryikkghpkyRigvgapvymaavleyltaeilelavnaardnkkgrvtprhillavandeelnqllkgvtiasggvlpnihpellakk/krgRkesysIyvykvlkqvhpdtgisskamgimnsfvndiferiaseasrlahynkrstitsrevqtavrlllpgelakhavsegtkavtkytssk >1u35_G:Histone-fold; title=CRYSTAL STRUCTURE OF THE NUCLEOSOME CORE PARTICLE CONTAINING THE HISTONE DOMAIN OF MACROH2A organism=? DNA sequence DA(I1):DT(J290) DT(I2):DA(J289) DC(I3):DG(J288) DA(I4):DT(J287) DA(I5):DT(J286) DT(I6):DA(J285) DA(I7):DT(J284) DT(I8):DA(J283) DC(I9):DG(J282) DC(I10):DG(J281) DA(I11):DT(J280) DC(I12):DG(J279) DC(I13):DG(J278) DT(I14):DA(J277) DG(I15):DC(J276) DC(I16):DG(J275) DA(I17):DT(J274) DG(I18):DC(J273) DA(I19):DT(J272) DT(I20):DA(J271) DT(I21):DA(J270) DC(I22):DG(J269) DT(I23):DA(J268) DA(I24):DT(J267) DC(I25):DG(J265) DA(I27):DT(J264) DA(I28):DT(J263) DA(I29):DT(J262) DA(I30):DT(J261) DG(I31):DC(J260) DT(I32):DA(J259) DG(I33):DC(J258) DT(I34):DA(J257) DA(I35):DT(J256) DT(I36):DA(J255) DT(I37):DA(J254) DT(I38):DA(J253) DG(I39):DC(J252) DG(I40):DC(J251) DA(I41):DT(J250) DA(I42):DT(J249) DA(I43):DT(J248) DC(I44):DG(J247) DT(I45):DA(J246) DG(I46):DC(J245) DC(I47):DG(J244) DT(I48):DA(J243) DC(I49):DG(J242) DC(I50):DG(J241) DA(I51):DT(J240) DT(I52):DA(J239) DC(I53):DG(J238) DA(I54):DT(J237) DA(I55):DT(J236) DA(I56):DT(J235) DA(I57):DT(J234) DG(I58):DC(J233) DG(I59):DC(J232) DC(I60):DG(J231) DA(I61):DT(J230) DT(I62):DA(J229) DG(I63):DC(J228) DT(I64):DA(J227) DT(I65):DA(J226) DC(I66):DG(J225) DA(I67):DT(J224) DG(I68):DC(J223) DC(I69):DG(J222) DG(I70):DC(J221) DG(I71):DC(J220) DA(I72):DT(J219) DA(I73):DT(J218) DT(I74):DA(J217) DC(I75):DG(J216) DC(I76):DG(J215) DG(I77):DC(J214) DC(I78):DG(J213) DT(I79):DA(J212) DG(I80):DC(J211) DA(I81):DT(J210) DA(I82):DT(J209) DC(I83):DG(J208) DA(I84):DT(J207) DT(I85):DA(J206) DG(I86):DC(J205) DC(I87):DG(J204) DC(I88):DG(J203) DT(I89):DA(J202) DT(I90):DA(J201) DT(I91):DA(J200) DT(I92):DA(J199) DG(I93):DC(J198) DA(I94):DT(J197) DT(I95):DA(J196) DG(I96):DC(J195) DG(I97):DC(J194) DA(I98):DT(J193) DG(I99):DC(J192) DC(I100):DG(J191) DA(I101):DT(J190) DG(I102):DC(J189) DT(I103):DA(J188) DT(I104):DA(J187) DT(I105):DA(J186) DC(I106):DG(J185) DC(I107):DG(J184) DA(I108):DT(J183) DA(I109):DT(J182) DA(I110):DT(J181) DT(I111):DA(J180) DA(I112):DT(J179) DC(I113):DG(J178) DA(I114):DT(J177) DC(I115):DG(J176) DT(I116):DA(J175) DT(I117):DA(J174) DT(I118):DA(J173) DT(I119):DA(J172) DG(I120):DC(J170) DT(I122):DA(J169) DA(I123):DT(J168) DG(I124):DC(J167) DA(I125):DT(J166) DA(I126):DT(J165) DT(I127):DA(J164) DC(I128):DG(J163) DT(I129):DA(J162) DG(I130):DC(J161) DC(I131):DG(J160) DA(I132):DT(J159) DG(I133):DC(J158) DG(I134):DC(J157) DT(I135):DA(J156) DG(I136):DC(J155) DG(I137):DC(J154) DA(I138):DT(J153) DT(I139):DA(J152) DA(I140):DT(J151) DT(I141):DA(J150) DT(I142):DA(J149) DG(I143):DC(J148) DA(I144):DT(J147) DT(I145):DA(J146) chainG ( 1) LYS1014 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 29) ARG1042 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence KtsrsakagvifpvgrmlryikkghpkyRigvgapvymaavleyltaeilelavnaardnkkgrvtprhillavandeelnqllkgvtiasggvlpnihpellakk >1u45_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=8OXOGUANINE AT THE PRE-INSERTION SITE OF THE POLYMERASE ACTIVE SITE organism=Geobacillus stearothermophilus DNA sequence DC(B21):DG(C12) DC(B22):DG(C11) DT(B23):DA(C10) DG(B24):DC(C9) DA(B25):DT(C8) DC(B26):DG(C7) DT(B27):DA(C6) DC(B28):DG(C5) DG(B29):DC(C4) chainA (286) LYS582 0 0 0 0 3 5 0 0 0 (319) ARG615 0 0 0 0 0 0 0 3 11 (329) ASN625 0 0 0 0 0 3 4 1 0 (333) ARG629 0 0 0 0 0 0 0 8 4 (418) TYR714 0 0 0 0 0 0 0 0 46 (497) ASN793 0 0 0 0 0 0 0 0 1 (501) GLN797 0 0 0 0 0 0 0 1 5 (533) HIS829 0 0 0 0 0 0 0 2 0 prot.sequence aamaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgKlqstyiegllkvvrpdtkkvhtifnqaltqtgRlsstepNlqNipiRleegrkirqafvpsesdwlifaadysqiElrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnfgivYgisdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfaermamNtpiQgsaadiikkamidlnarlkeerlqahlllqvHdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak >1u47_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=CYTOSINE-8-OXOGUANINE BASE PAIR AT THE POLYMERASE ACTIVE SITE organism=Geobacillus stearothermophilus DNA sequence DC(C5):DG(B28) DG(C6):DC(B27) DA(C7):DT(B26) DG(C8):DC(B25) DT(C9):DA(B24) DC(C10):DG(B23) DA(C11):DT(B22) DG(C12):DC(B21) DG(C13):DC(B20) chainA (286) LYS582 0 0 4 3 0 0 0 0 0 (291) TYR587 0 1 0 0 0 0 0 0 0 (319) ARG615 1 0 0 0 0 0 0 0 0 (326) ASN622 0 1 0 0 0 0 0 0 0 (329) ASN625 1 7 1 0 0 0 0 0 0 prot.sequence aamaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgKlqstYiegllkvvrpdtkkvhtifnqaltqtgRlsstepNlqNipirleegrkirqafvpsesdwlifaadysqielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnfgivYgisdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqahlllqvhdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak >1u48_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=EXTENSION OF A CYTOSINE-8-OXOGUANINE BASE PAIR organism=Geobacillus stearothermophilus DNA sequence DC(B20):DG(C13) DT(B21):DA(C12) DG(B22):DC(C11) DA(B23):DT(C10) DC(B24):DG(C9) DT(B25):DA(C8) DC(B26):DG(C7) DG(B27):DC(C6) DC(B28):8OG(C5) DA(B29):DT(C4) chainA (286) LYS582 0 0 0 0 0 3 5 0 0 0 (291) TYR587 0 0 0 0 0 0 0 1 0 0 (319) ARG615 0 0 0 0 0 0 0 0 1 8 (326) ASN622 0 0 0 0 0 0 0 1 0 0 (329) ASN625 0 0 0 0 0 0 2 9 1 0 (333) ARG629 0 0 0 0 0 0 0 0 8 4 (418) TYR714 0 0 0 0 0 0 0 0 0 44 (501) GLN797 0 0 0 0 0 0 0 0 0 3 prot.sequence aamaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgKlqsTYiegllkvvrpdtkkvhtifnqaltqtgRlsstepNlqNipiRleegrkirqafvpsesdwlifaadysqielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnfgivYgisdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfaermamntpiQgsaadiikkamidlnarlkeerlqahlllqvHdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak >1u49_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=ADENINE-8OXOGUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE organism=Geobacillus stearothermophilus DNA sequence DC(C5):DG(B28) DG(C6):DC(B27) DA(C7):DT(B26) DG(C8):DC(B25) DT(C9):DA(B24) DC(C10):DG(B23) DA(C11):DT(B22) DG(C12):DC(B21) DG(C13):DC(B20) chainA (286) LYS582 0 0 5 3 0 0 0 0 0 (291) TYR587 0 1 0 0 0 0 0 0 0 (319) ARG615 3 0 0 0 0 0 0 0 0 (326) ASN622 0 1 0 0 0 0 0 0 0 (329) ASN625 1 7 2 0 0 0 0 0 0 (333) ARG629 5 0 0 0 0 0 0 0 0 (533) HIS829 1 0 0 0 0 0 0 0 0 prot.sequence aamaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgKlqsTYiegllkvvrpdtkkvhtifnqaltqtgRlsstepNlqNipiRleegrkirqafvpsesdwlifaadysqielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnfgivYgisdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqahlllqvHdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak >1u4b_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=EXTENSION OF AN ADENINE-8OXOGUANINE MISMATCH organism=Geobacillus stearothermophilus DNA sequence DT(C4):DA(B29) DA(C5):DT(B28) 8OG(C6):DA(B27) DC(C7):DG(B26) DG(C8):DC(B25) DA(C9):DT(B24) DG(C10):DC(B23) DT(C11):DA(B22) DC(C12):DG(B21) DA(C13):DT(B20) chainA (286) LYS582 0 0 0 6 2 0 0 0 0 0 (319) ARG615 7 1 0 0 0 0 0 0 0 0 (329) ASN625 0 1 6 2 0 0 0 0 0 0 (418) TYR714 48 0 0 0 0 0 0 0 0 0 (501) GLN797 2 0 0 0 0 0 0 0 0 0 prot.sequence aamaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgKlqsTyiegllkvvrpdtkkvhtifnqaltqtgRlsstepnlqNipirleegrkirqafvpsesdwlifaadysqielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnfgivYgisdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfaermamntpiQgsaadiikkamidlnarlkeerlqahlllqvHdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak >1u78_A:Homeodomain-like; title=STRUCTURE OF THE BIPARTITE DNA-BINDING DOMAIN OF TC3 TRANSPOSASE BOUND TO TRANSPOSON DNA organism=Caenorhabditis elegans DNA sequence DT(C29):DA(B27) DG(C30):DC(B26) DT(C31):DA(B25) DG(C32):DC(B24) DG(C33):DC(B23) DG(C34):DC(B22) DA(C35):DT(B21) DA(C36):DT(B20) DA(C37):DT(B19) DG(C38):DC(B18) DT(C39):DA(B17) DT(C40):DA(B16) DC(C41):DG(B15) DT(C42):DA(B14) DA(C43):DT(B13) DT(C44):DA(B12) DA(C45):DT(B11) DG(C46):DC(B10) DG(C47):DC(B9) DA(C48):DT(B8) DC(C49):DG(B7) DC(C50):DG(B6) DC(C51):DG(B5) DC(C52):DG(B4) DC(C53):DG(B3) chainA ( 1) PRO2 0 0 0 0 0 0 0 0 0 0 0 0 0 4 7 5 3 0 0 0 0 0 0 0 0 ( 2) ARG3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 18 10 0 0 0 0 0 0 0 ( 25) HIS26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 10 0 0 ( 34) SER35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 2 0 0 0 0 0 0 ( 35) ARG36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 14 6 0 0 0 ( 36) HIS37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 17 17 0 0 0 0 0 0 ( 39) ARG40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 3 0 0 0 0 ( 53) ARG54 0 0 0 0 0 0 0 0 0 0 0 0 1 10 12 0 0 0 0 0 0 0 0 0 0 ( 56) ARG57 0 0 0 0 0 0 0 0 0 5 10 4 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 91) SER92 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 92) LYS93 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 93) ARG94 0 0 0 0 14 15 8 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 94) THR95 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 96) LEU97 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 97) ASN98 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence PRgsalsdteraqldvmkllnvslHemsrkisrSRHciRvylkdpvsygtskRapRrkalsvrdernviraasnscktardirnelqlsaSKRTiLNvikrsg >1u8r_ABCD:Iron-dependent_repressor_protein,_dimerization_domain;"Winged_helix"_DNA-binding_domain;C-terminal_domain_of_transcriptional_repressors; title=CRYSTAL STRUCTURE OF AN IDER-DNA COMPLEX REVEALS A CONFORMATIONAL CHANGE IN ACTIVATED IDER FOR BASE-SPECIFIC INTERACTIONS organism=Mycobacterium tuberculosis DNA sequence DC(F1):DG(E32) DA(F2):DT(E31) DC(F3):DG(E30) DT(F4):DA(E29) DA(F5):DT(E28) DA(F6):DT(E27) DA(F7):DT(E26) DA(F8):DT(E25) DT(F9):DA(E24) DT(F10):DA(E23) DA(F11):DT(E22) DG(F12):DC(E21) DG(F13):DC(E20) DG(F14):DC(E19) DC(F15):DG(E18) DA(F16):DT(E17) DG(F17):DC(E16) DC(F18):DG(E15) DC(F19):DG(E14) DT(F20):DA(E13) DG(F21):DC(E12) DT(F22):DA(E11) DG(F23):DC(E10) DC(F24):DG(E9) DT(F25):DA(E8) DA(F26):DT(E7) DA(F27):DT(E6) DC(F28):DG(E5) DA(F29):DT(E4) DG(F30):DC(E3) DG(F31):DC(E2) DG(F32):DC(E1) chainA ( 37) SER37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 ( 39) PRO39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 9 3 0 0 0 0 0 0 0 0 0 0 0 ( 40) THR40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 43) GLN43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 47) ARG47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainB ( 37) SER37 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 39) PRO39 0 0 0 0 0 0 0 0 5 3 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 40) THR40 0 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 42) SER42 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 43) GLN43 0 0 0 0 0 0 0 0 0 0 0 0 7 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 47) ARG47 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainC ( 37) SER37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 39) PRO39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 9 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 40) THR40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 43) GLN43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 47) ARG47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 chainD ( 37) SER37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 ( 39) PRO39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 3 2 0 0 0 0 0 ( 40) THR40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 ( 43) GLN43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 2 0 0 0 0 0 0 0 0 0 ( 47) ARG47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 prot.sequence mnelvdttemylrtiydleeegvtplrariaerldqSgPTvsQtvsRmerdgllrvagdrhleltekgralaiavmrkhrlaerllvdviglpweevhaeacrwehvmsedverrlvkvlnnpttspfgnpipgldelgvglvrltelpagspvavvvrqltehvqgdidlitrlkdagvvpnarvtvettpgggvtivipghenvtlphemahavkvekv/mnelvdttemylrtiydleeegvtplrariaerldqSgPTvSQtvsRmerdgllrvagdrhleltekgralaiavmrkhrlaerllvdviglpweevhaeacrwehvmsedverrlvkvlnnpttspfgnpipgldelgvglvrltelpagspvavvvrqltehvqgdidlitrlkdagvvpnarvtvettpgggvtivipghenvtlphemahavkvekv/mnelvdttemylrtiydleeegvtplrariaerldqSgPTvsQtvsRmerdgllrvagdrhleltekgralaiavmrkhrlaerllvdviglpweevhaeacrwehvmsedverrlvkvlnnpttspfgnpipgldelgvglvrltelpagspvavvvrqltehvqgdidlitrlkdagvvpnarvtvettpgggvtivipghenvtlphemahavkvekv/mnelvdttemylrtiydleeegvtplrariaerldqSgPTvsQtvsRmerdgllrvagdrhleltekgralaiavmrkhrlaerllvdviglpweevhaeacrwehvmsedverrlvkvlnnpttspfgnpipgldelgvglvrltelpagspvavvvrqltehvqgdidlitrlkdagvvpnarvtvettpgggvtivipghenvtlphemahavkvekv >1u8r_B:Iron-dependent_repressor_protein,_dimerization_domain;"Winged_helix"_DNA-binding_domain;C-terminal_domain_of_transcriptional_repressors; title=CRYSTAL STRUCTURE OF AN IDER-DNA COMPLEX REVEALS A CONFORMATIONAL CHANGE IN ACTIVATED IDER FOR BASE-SPECIFIC INTERACTIONS organism=Mycobacterium tuberculosis DNA sequence DC(F1):DG(E32) DA(F2):DT(E31) DC(F3):DG(E30) DT(F4):DA(E29) DA(F5):DT(E28) DA(F6):DT(E27) DA(F7):DT(E26) DA(F8):DT(E25) DT(F9):DA(E24) DT(F10):DA(E23) DA(F11):DT(E22) DG(F12):DC(E21) DG(F13):DC(E20) DG(F14):DC(E19) DC(F15):DG(E18) DA(F16):DT(E17) DG(F17):DC(E16) DC(F18):DG(E15) DC(F19):DG(E14) DT(F20):DA(E13) DG(F21):DC(E12) DT(F22):DA(E11) DG(F23):DC(E10) DC(F24):DG(E9) DT(F25):DA(E8) DA(F26):DT(E7) DA(F27):DT(E6) DC(F28):DG(E5) DA(F29):DT(E4) DG(F30):DC(E3) DG(F31):DC(E2) DG(F32):DC(E1) chainB ( 37) SER37 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 39) PRO39 0 0 0 0 0 0 0 0 5 3 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 40) THR40 0 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 42) SER42 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 43) GLN43 0 0 0 0 0 0 0 0 0 0 0 0 7 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 47) ARG47 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence mnelvdttemylrtiydleeegvtplrariaerldqSgPTvSQtvsRmerdgllrvagdrhleltekgralaiavmrkhrlaerllvdviglpweevhaeacrwehvmsedverrlvkvlnnpttspfgnpipgldelgvglvrltelpagspvavvvrqltehvqgdidlitrlkdagvvpnarvtvettpgggvtivipghenvtlphemahavkvekv >1u8r_GHIJ:Iron-dependent_repressor_protein,_dimerization_domain;"Winged_helix"_DNA-binding_domain;C-terminal_domain_of_transcriptional_repressors; title=CRYSTAL STRUCTURE OF AN IDER-DNA COMPLEX REVEALS A CONFORMATIONAL CHANGE IN ACTIVATED IDER FOR BASE-SPECIFIC INTERACTIONS organism=Mycobacterium tuberculosis DNA sequence DC(K1):DG(L32) DC(K2):DG(L31) DC(K3):DG(L30) DT(K4):DA(L29) DG(K5):DC(L28) DT(K6):DA(L27) DT(K7):DA(L26) DA(K8):DT(L25) DG(K9):DC(L24) DC(K10):DG(L23) DA(K11):DT(L22) DC(K12):DG(L21) DA(K13):DT(L20) DG(K14):DC(L19) DG(K15):DC(L18) DC(K16):DG(L17) DT(K17):DA(L16) DG(K18):DC(L15) DC(K19):DG(L14) DC(K20):DG(L13) DC(K21):DG(L12) DT(K22):DA(L11) DA(K23):DT(L10) DA(K24):DT(L9) DT(K25):DA(L8) DT(K26):DA(L7) DT(K27):DA(L6) DT(K28):DA(L5) DA(K29):DT(L4) DG(K30):DC(L3) DT(K31):DA(L2) DG(K32):DC(L1) chainG ( 37) SER37 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 39) PRO39 0 0 0 0 0 0 0 0 0 0 0 3 9 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 40) THR40 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 43) GLN43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 47) ARG47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainH ( 37) SER37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 ( 39) PRO39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 3 2 0 0 0 0 0 0 0 0 ( 40) THR40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 0 ( 42) SER42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ( 43) GLN43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 9 0 0 0 0 0 0 0 0 0 0 0 0 ( 47) ARG47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 chainI ( 37) SER37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 39) PRO39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 9 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 40) THR40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 43) GLN43 0 0 0 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 47) ARG47 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 chainJ ( 37) SER37 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 39) PRO39 0 0 0 0 0 5 3 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 40) THR40 0 0 0 0 0 0 0 0 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 42) SER42 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 43) GLN43 0 0 0 0 0 0 0 0 0 2 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ( 47) ARG47 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence mnelvdttemylrtiydleeegvtplrariaerldqSgPTvsQtvsRmerdgllrvagdrhleltekgralaiavmrkhrlaerllvdviglpweevhaeacrwehvmsedverrlvkvlnnpttspfgnpipgldelgvglvrltelpagspvavvvrqltehvqgdidlitrlkdagvvpnarvtvettpgggvtivipghenvtlphemahavkvekv/mnelvdttemylrtiydleeegvtplrariaerldqSgPTvSQtvsRmerdgllrvagdrhleltekgralaiavmrkhrlaerllvdviglpweevhaeacrwehvmsedverrlvkvlnnpttspfgnpipgldelgvgnlvrltelpagspvavvvrqltehvqgdidlitrlkdagvvpnarvtvettpgggvtivipghenvtlphemahavkvekv/mnelvdttemylrtiydleeegvtplrariaerldqSgPTvsQtvsRmerdgllrvagdrhleltekgralaiavmrkhrlaerllvdviglpweevhaeacrwehvmsedverrlvkvlnnpttspfgnpipgldelgvglvrltelpagspvavvvrqltehvqgdidlitrlkdagvvpnarvtvettpgggvtivipghenvtlphemahavkvekv/mnelvdttemylrtiydleeegvtplrariaerldqSgPTvSQtvsRmerdgllrvagdrhleltekgralaiavmrkhrlaerllvdviglpweevhaeacrwehvmsedverrlvkvlnnpttspfgnpipgldelgvgnlvrltelpagspvavvvrqltehvqgdidlitrlkdagvvpnarvtvettpgggvtivipghenvtlphemahavkvekv >1ua0_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=AMINOFLUORENE DNA ADDUCT AT THE PRE-INSERTION SITE OF A DNA POLYMERASE organism=Geobacillus stearothermophilus DNA sequence DC(C4):DG(B29) DA(C5):DT(B28) DC(C6):DG(B27) DC(C7):DG(B26) DA(C8):DT(B25) DT(C9):DA(B24) DC(C10):DG(B23) DC(C11):DG(B22) DC(C12):DG(B21) chainA (286) LYS582 0 0 0 6 3 0 0 0 0 (291) TYR587 0 0 1 0 0 0 0 0 0 (319) ARG615 11 2 0 0 0 0 0 0 0 (326) ASN622 0 0 1 0 0 0 0 0 0 (329) ASN625 0 1 9 2 0 0 0 0 0 (333) ARG629 2 8 0 0 0 0 0 0 0 (418) TYR714 45 0 0 0 0 0 0 0 0 (501) GLN797 4 1 0 0 0 0 0 0 0 prot.sequence aamaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgKlqsTYiegllkvvrpdtkkvhtifnqaltqtgRlsstepNlqNipiRleegrkirqafvpsesdwlifaadysqiElrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnfgivYgisdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfaermamNtpiQgsaadiikkamidlnarlkeerlqahlllqvHdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak >1ua1_A:DNA/RNA_polymerases;Ribonuclease_H-like; title=STRUCTURE OF AMINOFLUORENE ADDUCT PAIRED OPPOSITE CYTOSINE AT THE POLYMERASE ACTIVE SITE. organism=Geobacillus stearothermophilus DNA sequence DG(C27):DC(B16) DC(C28):DG(B15) DA(C29):DT(B14) DC(C30):DG(B13) DC(C31):DG(B12) DA(C32):DT(B11) DT(C33):DA(B10) DC(C34):DG(B9) DC(C35):DG(B8) DC(C36):DG(B7) DT(C37):DA(B6) chainA (286) LYS582 0 0 0 6 1 0 0 0 0 0 0 (291) TYR587 0 0 1 0 0 0 0 0 0 0 0 (319) ARG615 7 3 0 0 0 0 0 0 0 0 0 (329) ASN625 0 1 4 2 0 0 0 0 0 0 0 (414) PHE710 2 0 0 0 0 0 0 0 0 0 0 (418) TYR714 51 0 0 0 0 0 0 0 0 0 0 (420) ILE716 4 0 0 0 0 0 0 0 0 0 0 (533) HIS829 0 1 0 0 0 0 0 0 0 0 0 prot.sequence aamaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgKlqsTYiegllkvvrpdtkkvhtifnqaltqtgRlsstepNlqNipirleegrkirqafvpsesdwlifaadysqielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnFgivYgIsdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfaermamNtpiqgsaadiikkamidlnarlkeerlqahlllqvHdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak >1uaa_AB:P-loop_containing_nucleoside_triphosphate_hydrolases; title=E. COLI REP HELICASE/DNA COMPLEX organism=? DNA sequence DT(C15) DT(C1) DT(C2) DT(C3) DT(C4) DT(C5) DT(C6) DT(C7) DT(C8) DT(C9) DT(C10) DT(C11) DT(C12) DT(C13) DT(C14):DT(C15) chainA (128) LYS129 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 (132) GLN133 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 (133) GLN134 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 (136) SER137 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 (249) TRP250 0 0 0 0 0 0 0 0 0 0 0 0 0 46 9 (250) ARG251 8 0 0 0 0 0 0 0 0 0 0 0 0 0 14 (349) ARG350 0 0 0 0 0 0 0 0 0 0 0 0 8 15 0 (355) ARG356 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 (554) HIS558 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 (576) HIS580 0 0 0 0 0 0 0 0 0 0 0 0 9 0 0 (578) SER582 0 0 0 0 0 0 0 0 0 0 0 0 10 0 0 (612) ARG616 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 chainB ( 84) HIS85 0 0 0 0 1 7 0 0 0 0 0 0 0 0 0 ( 89) ASP90 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 ( 92) LYS93 0 0 0 0 0 0 0 0 8 0 0 0 0 0 0 ( 93) ARG94 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 (102) ALA103 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 (104) PHE105 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 (106) LEU107 0 0 0 0 0 0 2 4 0 0 0 0 0 0 0 (109) ASP110 0 0 0 0 0 11 0 0 0 0 0 0 0 0 0 (132) GLN133 0 0 1 5 0 0 0 0 0 0 0 0 0 0 0 (182) PHE183 0 0 0 0 0 31 2 0 0 0 0 0 0 0 0 (249) TRP250 0 0 60 10 0 0 0 0 0 0 0 0 0 0 0 (250) ARG251 0 0 0 7 12 1 0 0 0 0 0 0 0 0 0 (349) ARG350 0 9 6 0 0 0 0 0 0 0 0 0 0 0 0 (549) HIS558 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 (571) HIS580 0 21 0 0 0 0 0 0 0 0 0 0 0 0 0 (573) SER582 0 12 0 0 0 0 0 0 0 0 0 0 0 0 0 (574) SER583 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence rlnpgqqqavefvtgpclvlagagsgktrvitnkiahlirgcgyqarhiaavtftnkaaremkervgqtlgrkearglmistfHtlgldiikreyaalgmkanfslfdDtdqlallkelteglieddKvllQQliStisnwkndlktpsqaaasaigerdrifahcyglydahlkacnvldFddlillptlllqaneevrkrwqnkiryllvdeyqdtntsqyelvkllvgsrarftvvgdddqsiysWRgarpqnlvllsqdfpalkvikleqnyrssgrilkaaniliannphvfekrlfselgygaelkvlsanneeheaervtgeliahhfvnktqykdyailyRgnhqsRvfekflmqnripykisggtsffsrpeikdllaylrvltnpdddsaflrivntpkreigpatlkklgewamtrnksmftasfdmglsqtlsgrgyealtrfthwlaeiqrlaerepiaavrdlihgmdyeswlyetspspkaaemrmknvnqlfswmtemlegseldepmtltqvvtrftlRdmmereeeldqvqlmtlHaskglefpyvymvgmeegflpHqSsidednideerrlayvgitraqkeltftlckerRqygelvrpepsrfllelpqddliw/rlnpgqqqavefvtgpclvlagagsgktrvitnkiahlirgcgyqarhiaavtftnkaaremkervgqtlgrkearglmistfHtlglDiiKReyaalgmkAnFsLfdDtdqlallkelteglieddkvllQqlistisnwkndlktpsqaaasaigerdrifahcyglydahlkacnvldFddlillptlllqaneevrkrwqnkiryllvdeyqdtntsqyelvkllvgsrarftvvgdddqsiysWRgarpqnlvllsqdfpalkvikleqnyrssgrilkaaniliannphvfekrlfselgygaelkvlsanneeheaervtgeliahhfvnktqykdyailyRgnhqsrvfekflmqnripykisggtsffsrpeikdllaylrvltnpdddsaflrivntpkreigpatlkklgewamtrnksmftasfdmglsqtlsgrgyealtrfthwlaeiqrlaerepiaavrdlihgmdyeswlyetspspkaaemrmknvnqlfswmtemlegseldepmtltqvvtrftlrdeeldqvqlmtlHaskglefpyvymvgmeegflpHqSSidednideerrlayvgitraqkeltftlckerrqygelvrpepsrfllelpqddliweq >1uaa_B:P-loop_containing_nucleoside_triphosphate_hydrolases;?; title=E. COLI REP HELICASE/DNA COMPLEX organism=? DNA sequence DT(C15) DT(C1) DT(C2) DT(C3) DT(C4) DT(C5) DT(C6) DT(C7) DT(C8) DT(C9) DT(C10) DT(C11) DT(C12) DT(C13) DT(C14):DT(C15) chainB ( 84) HIS85 0 0 0 0 1 7 0 0 0 0 0 0 0 0 0 ( 89) ASP90 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 ( 92) LYS93 0 0 0 0 0 0 0 0 8 0 0 0 0 0 0 ( 93) ARG94 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 (102) ALA103 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 (104) PHE105 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 (106) LEU107 0 0 0 0 0 0 2 4 0 0 0 0 0 0 0 (109) ASP110 0 0 0 0 0 11 0 0 0 0 0 0 0 0 0 (132) GLN133 0 0 1 5 0 0 0 0 0 0 0 0 0 0 0 (182) PHE183 0 0 0 0 0 31 2 0 0 0 0 0 0 0 0 (249) TRP250 0 0 60 10 0 0 0 0 0 0 0 0 0 0 0 (250) ARG251 0 0 0 7 12 1 0 0 0 0 0 0 0 0 0 (349) ARG350 0 9 6 0 0 0 0 0 0 0 0 0 0 0 0 (549) HIS558 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 (571) HIS580 0 21 0 0 0 0 0 0 0 0 0 0 0 0 0 (573) SER582 0 12 0 0 0 0 0 0 0 0 0 0 0 0 0 (574) SER583 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 prot.sequence rlnpgqqqavefvtgpclvlagagsgktrvitnkiahlirgcgyqarhiaavtftnkaaremkervgqtlgrkearglmistfHtlglDiiKReyaalgmkAnFsLfdDtdqlallkelteglieddkvllQqlistisnwkndlktpsqaaasaigerdrifahcyglydahlkacnvldFddlillptlllqaneevrkrwqnkiryllvdeyqdtntsqyelvkllvgsrarftvvgdddqsiysWRgarpqnlvllsqdfpalkvikleqnyrssgrilkaaniliannphvfekrlfselgygaelkvlsanneeheaervtgeliahhfvnktqykdyailyRgnhqsrvfekflmqnripykisggtsffsrpeikdllaylrvltnpdddsaflrivntpkreigpatlkklgewamtrnksmftasfdmglsqtlsgrgyealtrfthwlaeiqrlaerepiaavrdlihgmdyeswlyetspspkaaemrmknvnqlfswmtemlegseldepmtltqvvtrftlrdeeldqvqlmtlHaskglefpyvymvgmeegflpHqSSidednideerrlayvgitraqkeltftlckerrqygelvrpepsrfllelpqddliweq >1ubd_C:C2H2_and_C2HC_zinc_fingers; title=CO-CRYSTAL STRUCTURE OF HUMAN YY1 ZINC FINGER DOMAIN BOUND TO THE ADENO-ASSOCIATED VIRUS P5 INITIATOR ELEMENT organism=Homo sapiens DNA sequence DC(B21):DG(A20) DG(B22):DC(A19) DC(B23):DG(A18) DT(B24):DA(A17) DT(B25):DA(A16) DC(B26):