1b3t_AB : 3D-footprint complex

structure name	EBNA-1 NUCLEAR PROTEIN/DNA COMPLEX
reference	Bochkareva et al.
source	Human herpesvirus 4
experiment	X-ray (resolution=2.20, R-factor=?)
structural superfamily	Viral DNA-binding domain;
reference complex	7u1t_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1b3t_A interface=1,4,5,9,15,17,18,54,55,58,59,62, KggWFgkhRgqggsNpKFeniaeglrallarshverttdegtwvagvfvyggsKTslYNlrRgtalaipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnirvtvcsfddgvdlp > 1b3t_B interface=1,4,5,9,17,18,54,55,58,59,62, KggWFgkhRgqggsnpKFeniaeglrallarshverttdegtwvagvfvyggsKTslYNlrRgtalaipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnirvtvcsfddgvdlp
interface signature	KWFRNKFKTYNR/KWFRKFKTYNR

Estimated binding specificities ?

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# IC=18.439 IC/col=1.024 n_of_columns=18

specificity:

A |   1   0   0  96  92   1   1  55   4  76  24   7   3   1   0   0   0   0
C |   4   0   0   0   0   4  81  21   5   1  24   1  79   1   0  96  96  96
G |  90  96  96   0   1  90   1  19   1  12  24  88   9   0   0   0   0   0
T |   1   0   0   0   3   1  13   1  86   7  24   0   5  94  96   0   0   0

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updated Tue Jul 29 14:22:04 2025