1b3t_AB : 3D-footprint complex

structure name	EBNA-1 NUCLEAR PROTEIN/DNA COMPLEX
reference	Bochkareva et al.
source	Human herpesvirus 4
experiment	X-ray (resolution=2.20, R-factor=?)
structural superfamily	Viral DNA-binding domain;
reference complex	7u1t_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1b3t_A interface=1,4,5,9,15,17,18,54,55,58,59,62, KggWFgkhRgqggsNpKFeniaeglrallarshverttdegtwvagvfvyggsKTslYNlrRgtalaipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnirvtvcsfddgvdlp > 1b3t_B interface=1,4,5,9,17,18,54,55,58,59,62, KggWFgkhRgqggsnpKFeniaeglrallarshverttdegtwvagvfvyggsKTslYNlrRgtalaipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnirvtvcsfddgvdlp
interface signature	KWFRNKFKTYNR/KWFRKFKTYNR

Estimated binding specificities ?

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# IC=19.564 IC/col=1.087 n_of_columns=18

specificity:

A |   0   0   0  96  92   8   4  84   4  90   1   9   1   0   0   0   0   1
C |   0   0   0   0   1   9  90   5   9   1   9   4  86   1   0  96  96  93
G |  96  96  96   0   1  72   1   3   1   1  12  82   4   3   0   0   0   1
T |   0   0   0   0   2   7   1   4  82   4  74   1   5  92  96   0   0   1

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updated Mon Sep 9 11:55:32 2024