interface graph thumbnail
legend  pdf

structure nameEBNA-1 NUCLEAR PROTEIN/DNA COMPLEX
referenceBochkareva et al.
sourceHuman herpesvirus 4
experimentX-ray (resolution=2.20, R-factor=?)
structural superfamilyViral DNA-binding domain;
reference complex7u1t_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKWFRNKFKTYNR/KWFRKFKTYNR

Estimated binding specificities ?

readout + contactlogo
# IC=18.892 IC/col=1.050 n_of_columns=18 specificity:   
A |   0   0   0  96  96   9   1  78   0  82   7   5   2   1   1   0   0   2
C |   0   0   0   0   0  11  92   7  11   0   5  11  86   3   1  96  96  92
G |  94  96  96   0   0  61   0   5   0  14  13  78   1   4   0   0   0   1
T |   2   0   0   0   0  15   3   6  85   0  71   2   7  88  94   0   0   1
scan!

home
updated Fri Dec 13 08:45:54 2024