1cez_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A T7 RNA POLYMERASE-T7 PROMOTER COMPLEX (PROTEIN BACTERIOPHAGE T7 RNA POLYMERASE)
reference	Cheetham et al. Nature 399 80 1999
source	Enterobacteria phage T7
experiment	X-ray (resolution=2.40, R-factor=0.224)
structural superfamily	DNA/RNA polymerases;
sequence family	DNAdependent RNA polymerase;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1cez_A interface=75,77,210,216,219,725,727,735,737,739, iakndfsdielaaipfntladhygerlareqlalehesyemgearfrkmfplittllpkmiarindwfeevkakRgKrptafqflqeikpeavayitikttlacltsadnttvqavasaigraiedearfgrirdleakhfkknveeqlnkrvghvykkafmqvveadmlskgllggeawsswhkedsihvgvrciemliestgmvslhRqnagvVgqDsetielapeyaeaiatragalagispmfqpcvvppkpwtgitgggywangrrplalvrthskkalmryedvympevykainiaqntawkinkkvlavanvitkwkhcpvedipaiereelpmkpedidmnpealtawkraaaavyrkdkarksrrislefmleqankfanhkaiwfpynmdwrgrvyavsmfnpqgndmtkglltlakgkpigkegyywlkihgancagvdkvpfperikfieenhenimacaksplentwwaeqdspfcflafcfeyagvqhhglsyncslplafdgscsgiqhfsamlrdevggravnllpsetvqdiygivakkvneilqadaingtdnevvtvtdentgeisekvklgtkalagqwlaygvtrsvtkrsvmtlaygskefgfrqqvledtiqpaidsgkglmftqpnqaagymakliwesvsvtvvaaveamnwlksaakllaaevkdkktgeilrkrcavhwvtpdgfpvwqeykkpiqtRlNlmflgqfRlQpTintnkdseidahkqesgiapnfvhsqdgshlrktvvwahekygiesfalihdsfgtipadaanlfkavretmvdtyescdvladfydqfadqlhesqldkmpalpakgnlnlrdilesdfafa
interface signature	RKRVDRNRQT

Estimated binding specificities ?

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# IC=11.098 IC/col=0.854 n_of_columns=13

specificity:

A |   0   0   0  96   0   9   9  24   0  24  11   0  84
C |   0   0   0   0   0   4  70  24   5  24   4   4   4
G |  96   0  96   0  96   4   4  24   9  24  13   4   4
T |   0  96   0   0   0  79  13  24  82  24  68  88   4

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updated Mon Dec 16 17:42:43 2024