1cez_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A T7 RNA POLYMERASE-T7 PROMOTER COMPLEX (PROTEIN BACTERIOPHAGE T7 RNA POLYMERASE)
reference	Cheetham et al. Nature 399 80 1999
source	Enterobacteria phage T7
experiment	X-ray (resolution=2.40, R-factor=0.224)
structural superfamily	DNA/RNA polymerases;
sequence family	DNAdependent RNA polymerase;
reference complex	1msw_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1cez_A interface=75,77,210,216,219,725,727,735,737,739, iakndfsdielaaipfntladhygerlareqlalehesyemgearfrkmfplittllpkmiarindwfeevkakRgKrptafqflqeikpeavayitikttlacltsadnttvqavasaigraiedearfgrirdleakhfkknveeqlnkrvghvykkafmqvveadmlskgllggeawsswhkedsihvgvrciemliestgmvslhRqnagvVgqDsetielapeyaeaiatragalagispmfqpcvvppkpwtgitgggywangrrplalvrthskkalmryedvympevykainiaqntawkinkkvlavanvitkwkhcpvedipaiereelpmkpedidmnpealtawkraaaavyrkdkarksrrislefmleqankfanhkaiwfpynmdwrgrvyavsmfnpqgndmtkglltlakgkpigkegyywlkihgancagvdkvpfperikfieenhenimacaksplentwwaeqdspfcflafcfeyagvqhhglsyncslplafdgscsgiqhfsamlrdevggravnllpsetvqdiygivakkvneilqadaingtdnevvtvtdentgeisekvklgtkalagqwlaygvtrsvtkrsvmtlaygskefgfrqqvledtiqpaidsgkglmftqpnqaagymakliwesvsvtvvaaveamnwlksaakllaaevkdkktgeilrkrcavhwvtpdgfpvwqeykkpiqtRlNlmflgqfRlQpTintnkdseidahkqesgiapnfvhsqdgshlrktvvwahekygiesfalihdsfgtipadaanlfkavretmvdtyescdvladfydqfadqlhesqldkmpalpakgnlnlrdilesdfafa
interface signature	RKRVDRNRQT

Estimated binding specificities ?

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# IC=11.104 IC/col=0.854 n_of_columns=13

specificity:

A |   0  78  66  24  72  24   6  96   0   0   0  96   0
C |   6   6  12  24   6  24   6   0  96   0  96   0  96
G |   6   6   6  24   6  24  72   0   0   0   0   0   0
T |  84   6  12  24  12  24  12   0   0  96   0   0   0

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updated Thu Sep 12 14:34:42 2024