1cqt_AI : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A TERNARY COMPLEX CONTAINING AN OCA-B PEPTIDE, THE OCT-1 POU DOMAIN, AND AN OCTAMER ELEMENT
reference	Chasman et al.
source	HOMO SAPIENS
experiment	X-ray (resolution=3.20, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;Homeodomain-like;
reference complex	1cqt_I 1o4x_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1cqt_A interface=42,43,44,47,48,54,58,75,78,120,123,124,127, epsdleeleqfaktfkqrriklgftqgdvglamgklygndfSQTtiSRfealnLsfkNmcklkpllekwlndaeRkkRtsietnirvaleksflenqkptseeitmiadqlnmekevirVwfCNrrQkekrinp > 1cqt_I interface=4,7,9, arpYqgVrVkepvkellrrkrg
interface signature	SQTSRLNRRVCNQ/YVV

Estimated binding specificities ?

readout + contact

# IC=9.443 IC/col=0.944 n_of_columns=10

specificity:

A |  12  96   0   0  12   0  24  96   0  48
C |  12   0   0   0   0   0  24   0   0  12
G |  12   0   0   0   0  96  24   0   0  12
T |  60   0  96  96  84   0  24   0  96  24

scan!

home
updated Mon Sep 9 12:01:49 2024