1cqt_AI : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A TERNARY COMPLEX CONTAINING AN OCA-B PEPTIDE, THE OCT-1 POU DOMAIN, AND AN OCTAMER ELEMENT
reference	Chasman et al.
source	HOMO SAPIENS
experiment	X-ray (resolution=3.20, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1cqt_A interface=42,43,44,47,48,54,58,75,78,120,123,124,127, epsdleeleqfaktfkqrriklgftqgdvglamgklygndfSQTtiSRfealnLsfkNmcklkpllekwlndaeRkkRtsietnirvaleksflenqkptseeitmiadqlnmekevirVwfCNrrQkekrinp > 1cqt_I interface=4,7,9, arpYqgVrVkepvkellrrkrg
interface signature	SQTSRLNRRVCNQ/YVV

Estimated binding specificities ?

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# IC=9.202 IC/col=0.920 n_of_columns=10

specificity:

A |  17  96   0  24   0  62  96  96   0  61
C |   8   0   0  24  96   8   0   0   0  10
G |  10   0   0  24   0   0   0   0   0  17
T |  61   0  96  24   0  26   0   0  96   8

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updated Fri Dec 13 08:52:54 2024