1cyq_AB : 3D-footprint complex

structure name	INTRON ENCODED HOMING ENDONUCLEASE I-PPOI (H98A)/DNA HOMING SITE COMPLEX
reference	Stoddard et al. Nat.Struct.Biol. 6 1096 1999
source	Physarum polycephalum
experiment	X-ray (resolution=1.93, R-factor=?)
structural superfamily	His-Me finger endonucleases;
reference complex	8vms_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1cyq_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctasalchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 1cyq_B interface=54,56,60,62,64,66,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvvhRwgshtvpfllepdningktctasalchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTRLK

Estimated binding specificities ?

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# IC=20.096 IC/col=1.005 n_of_columns=20

specificity:

A |   3   0  24   0   0   0   3   7   6   0  96  83   2  32   0  96   0  24   0  96
C |  10   0   9  96   0  96  67  80   3   1   0   3   5   0   0   0   0  24  96   0
G |   3  96  57   0   0   0   1   6   7   0   0   7  84  61  96   0  96  24   0   0
T |  80   0   6   0  96   0  25   3  80  95   0   3   5   3   0   0   0  24   0   0

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updated Tue Jul 29 14:29:01 2025