1cyq_AB : 3D-footprint complex

structure name	INTRON ENCODED HOMING ENDONUCLEASE I-PPOI (H98A)/DNA HOMING SITE COMPLEX
reference	Stoddard et al. Nat.Struct.Biol. 6 1096 1999
source	Physarum polycephalum
experiment	X-ray (resolution=1.93, R-factor=?)
structural superfamily	His-Me finger endonucleases;
reference complex	8vms_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1cyq_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctasalchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 1cyq_B interface=54,56,60,62,64,66,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvvhRwgshtvpfllepdningktctasalchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTRLK

Estimated binding specificities ?

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# IC=19.903 IC/col=0.995 n_of_columns=20

specificity:

A |   0   0  24   0   0   0   3   3   3   0  94  76   7  32   0  96   0   6   0  77
C |   0   0  24  96   0  96  34  86   6   0   0   5   5   1   0   0   0  59  96   7
G |   0  96  24   0   0   0   0   7   5   0   1   7  78  61  96   0  96   3   0   7
T |  96   0  24   0  96   0  59   0  82  96   1   8   6   2   0   0   0  28   0   5

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updated Fri Dec 13 08:53:05 2024