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structure nameCRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASE BGLII COMPLEXED WITH DNA 16-MER
(ENDONUCLEASE BGLII)
referenceSchildkraut et al. Nat.Struct.Biol. 7 134 2000
sourceBacillus subtilis
experimentX-ray (resolution=1.50, R-factor=0.192)
structural superfamilyRestriction endonuclease-like;
sequence familyRestriction endonuclease BglII;
multimeric complexes1d2i_AB 1dfm_AB
redundant complexes1d2i_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureQSNYFSNSSYR

Estimated binding specificities ?

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# IC=4.079 IC/col=0.680 n_of_columns=6 specificity:   
A |   6  96  15  74   9   4
C |   6   0  15   7   9  84
G |   6   0  49   7   9   4
T |  78   0  17   8  69   4
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Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: BGLII
AGATCTPubMed1dfm_A(1.90e-05), 1d2i_AB(1.32e-08), 1dfm_AB(1.67e-08), ... (total=4)
GGATCCPubMed1dfm_A(6.95e-03), 1d2i_AB(1.08e-02), 1dfm_AB(1.20e-02), ... (total=4)
GGATCTPubMed1dfm_A(1.90e-05), 1d2i_AB(4.24e-05), 1dfm_AB(5.02e-05), ... (total=4)
AGATCCPubMed1dfm_A(1.90e-05), 1d2i_AB(4.24e-05), 1dfm_AB(5.02e-05), ... (total=4)

Dendrogram of similar interfaces ?

matrix format



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updated Fri Sep 13 15:30:53 2024