1dmu_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE RESTRICTION ENDONUCLEASE BGLI (E.C.3.1.21.4) BOUND TO ITS DNA RECOGNITION SEQUENCE (BGLI RESTRICTION ENDONUCLEASE)
reference	Phillips et al.
source	Bacillus subtilis
experiment	X-ray (resolution=2.20, R-factor=0.183)
structural superfamily	Restriction endonuclease-like;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1dmu_A interface=71,73,150,266,267,271,277, mynlhrekifmsynqnkqylednpeiqekielyglnllnevisdneeeiradyneanflhpfwmnyppldRgKmpkgdqipwievgekavgskltrlvsqreditvreiglptgpderylltsptiysltngftdsimmfvdiksvgprDsdydlvlspnqvsgngdwaqleggiqnnqqtiqgprssqiflptipplyilsdgtiapvvhlfikpiyamrsltkgdtgqslykiklasvpnglglfcnpgyafdsaykflfrpgKDdrtKsllqkRvrvdlrvldkigprvmtidmdk
interface signature	RKDKDKR

Estimated binding specificities ?

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# IC=4.986 IC/col=1.247 n_of_columns=4

specificity:

A |  96   0   0   2
C |   0   0   0  88
G |   0  96  96   4
T |   0   0   0   2

scan!

Dendrogram of similar interfaces ?

matrix format

  
  KG----DC----------KG--KTRG----   L                +-----------1dmu_A    
                                       +------------1 
  --------ECRG----QTKGSC--RGRGYT   L   !            +-----------2ezv_A    
                                     --3 
  ----NC--------TT--------------   L   !       +----------------1sx5_A    
                                       +-------2 
  --RA--------NTPADA------------   L           +----------------5tgx_A

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updated Fri Sep 13 15:31:22 2024