1efa_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE LAC REPRESSOR DIMER BOUND TO OPERATOR AND THE ANTI-INDUCER ONPF
reference	Bell et al.
source	Escherichia coli
experiment	X-ray (resolution=2.60, R-factor=?)
structural superfamily	Periplasmic binding protein-like I;lambda repressor-like DNA-binding domains;
reference complex	1efa_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1efa_A interface=5,6,15,16,17,20,21,52,55,56, kpvtLYdvaeyagvSYQtvSRvvnqashvsaktrekveaamaelnyipnrvAqqLAgkqslligvatsslalhapsqivaaiksradqlgasvvvsmversgveacktavhnllaqrvsgliinyplddqdaiaveaactnvpalfldvsdqtpinsiifshedgtrlgvehlvalghqqiallagplssvsarlrlagwhkyltrnqiqpiaeregdwsamsgfqqtmqmlnegivptamlvandqmalgamraitesglrvgadisvvgyddtedsscyipplttikqdfrllgqtsvdrllqlsqgqavkgnqllpvslvkrktt > 1efa_B interface=5,6,15,16,17,20,21,28,52,55,56, kpvtLYdvaeyagvSYQtvSRvvnqasHvsaktrekveaamaelnyipnrvAqqLAgkqslligvatsslalhapsqivaaiksradqlgasvvvsmversgveacktavhnllaqrvsgliinyplddqdaiaveaactnvpalfldvsdqtpinsiifshedgtrlgvehlvalghqqiallagplssvsarlrlagwhkyltrnqiqpiaeregdwsamsgfqqtmqmlnegivptamlvandqmalgamraitesglrvgadisvvgyddtedsscyipplttikqdfrllgqtsvdrllqlsqgqavkgnqllpvslvkrkttla
interface signature	LYSYQSRALA/LYSYQSRHALA

Estimated binding specificities ?

readout + contact

# IC=16.093 IC/col=1.073 n_of_columns=15

specificity:

A |   7   0   0   0   7  86   4   0   0   1   7   0  96   0  88
C |   4   0   0  14   4   1   0  96   0  91   4  86   0  96   4
G |   9   0  96   0  81   0  83   0  96   0   4   1   0   0   4
T |  76  96   0  82   4   9   9   0   0   4  81   9   0   0   0

scan!

home
updated Mon Sep 9 12:06:39 2024