structure name | SOLUTION NMR STRUCTURE OF THE COMPLEX OF GCC-BOX BINDING DOMAIN OF ATERF1 AND GCC-BOX DNA, MINIMIZED AVERAGE STRUCTURE (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) |
source | ARABIDOPSIS THALIANA |
experiment | NMR |
structural superfamily | DNA-binding domain; |
sequence family | AP2 domain; |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | RRWERRW |
Estimated binding specificities ?
readout + contact |
A | 8 87 0 0 0 0 8 0 69 C | 11 0 0 96 96 0 72 96 11 G | 8 1 96 0 0 96 8 0 8 T | 69 8 0 0 0 0 8 0 8scan! |
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: ATERF1 | ||
AGCCGCC | PubMed | 1gcc_A(8.04e-11) |
GCCGCC | PubMed | 1gcc_A(1.18e-08) |
Dendrogram of similar interfaces ?
matrix formatRGRG----EC--RG------RGWC L +5wx9_A +----------------1 RGRGWA--EC--RG------RGWC L +----2 +1gcc_A ! ! --RT-------------------- L --3 +----------------6kdn_A ! --KA--YT--KG--RGECSARG-- L +---------------------3rmp_A |
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updated Fri Sep 13 15:37:32 2024