| structure name | CRYSTAL STRUCTURE OF C-REL BOUND TO DNA (C-REL PROTO-ONCOGENE PROTEIN) |
| reference | Ruetsche et al. Structure 9 669 2001 |
| source | Gallus gallus |
| experiment | X-ray (resolution=2.85, R-factor=?) |
| structural superfamily | p53-like transcription factors;E set domains; |
| sequence family | Rel homology domain RHD; IPT/TIG domain; |
| multimeric complexes | 1gji_AB |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RRYCER |
Estimated binding specificities ?
readout + contact |  |
A | 15 0 0 96 54 C | 13 0 0 0 13 G | 27 96 96 0 13 T | 41 0 0 0 16scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: C-REL | ||
| TTGGAAATTCC | PubMed | 1gji_A(7.38e-03), 1gji_AB(1.89e-04) |
| GGGAAAGTAC | PubMed | 1gji_A(5.42e-03) |
| CGGAGTTTCC | PubMed | 1gji_A(5.42e-03), 1gji_AB(1.02e-04) |
Dendrogram of similar interfaces ?
matrix formatRGRGYTCTEC--------RT------ L +1gji_A +-----1 RGRG----EC--------RGPTKT-- L ! +2ram_A ! RGRGYTCCEC----KT--KTPTKTRG L +--------------6 +1nfk_A ! ! +-2 RCRCYC--EC--HC----KT----RG L ! ! ! +1svc_P ! +---5 RGRGYA--EC--HG----KG------ L +------7 ! +7w7l_B ! ! +-3 RGRGYTCCEC--HG----KG------ L ! ! +1a3q_A --8 ! RG--YT--TTECRG------QA---- L ! +--------------------1imh_C ! ----------------RTVC------ L ! +4l0y_A +--------------------------4 ----------------RTVC------ L +3wu1_A |
home
updated Fri Sep 13 15:37:48 2024