1gxp_EF : 3D-footprint complex

structure name	PHOB EFFECTOR DOMAIN IN COMPLEX WITH PHO BOX DNA.
reference	Gomis-Ruth et al. Structure 10 701 2002
source	ESCHERICHIA COLI
experiment	X-ray (resolution=2.50, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1gxp_E interface=66,67,70,73,74,92, veeviemqglsldptshrvmageeplemgptefkllhffmthpervysreqllnhvwgtnvyvedRTvdVhiRRlrkalepgghdrmvqtvRgtgyrfstrf > 1gxp_F interface=66,67,70,73,74,92, veeviemqglsldptshrvmageeplemgptefkllhffmthpervysreqllnhvwgtnvyvedRTvdVhiRRlrkalepgghdrmvqtvRgtgyrfstrf
interface signature	RTVRRR/RTVRRR

Estimated binding specificities ?

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# IC=15.200 IC/col=0.844 n_of_columns=18

specificity:

A |   3   0   0   3  96  24  96  90  96  15  24   0   3   0   0  24  24  15
C |   0   0   0  84   0  24   0   3   0  19  24   0   3   0  96  24  24  17
G |   3  96   0   6   0  24   0   0   0  49  24   0  88   0   0  24  24  61
T |  90   0  96   3   0  24   0   3   0  13  24  96   2  96   0  24  24   3

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updated Fri Dec 13 09:14:36 2024