1hf0_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF OCT-1 BOUND TO DNA AS A DIMER
reference	Scholer et al. Mol.Cell 8 569 2001
source	HOMO SAPIENS
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;Homeodomain-like;
reference complex	1o4x_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1hf0_A interface=22,38,39,40,43,44,71,74,115,116,119,120,123, leeleqfaktfkqrriklgftQgdvglamgklygndfSQTtiSRfealnlsfknmsklkpllekwlndaeRkkRtsietnirvaleksflenqkptseeitmiadqlnmekeviRVwfSNrrQkekri > 1hf0_B interface=22,38,39,40,43,44,71,74,116,119,120,123, leeleqfaktfkqrriklgftQgdvglamgklygndfSQTtiSRfealnlsfknmsklkpllekwlndaeRkkRtsietnirvaleksflenqkptseeitmiadqlnmekevirVwfSNrrQkekri
interface signature	QSQTSRRRRVSNQ/QSQTSRRRVSNQ

Estimated binding specificities ?

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# IC=18.358 IC/col=1.080 n_of_columns=17

specificity:

A |   0   7   1   3   4   0  72  96  96   0   7   0  96  96  96   0   8
C |  88   6   3   7   0   0   6   0   0   3   3  96   0   0   0   3   0
G |   0  76   0  10   0  96  15   0   0  84  76   0   0   0   0   1  88
T |   8   7  92  76  92   0   3   0   0   9  10   0   0   0   0  92   0

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updated Mon Sep 9 12:25:06 2024