1ipp_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE/DNA COMPLEX
reference	Monnat Jr. et al.
source	Physarum polycephalum
experiment	X-ray (resolution=2.20, R-factor=?)
structural superfamily	His-Me finger endonucleases;
reference complex	8vms_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1ipp_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 1ipp_B interface=54,56,60,62,64,66,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvvhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTRLK

Estimated binding specificities ?

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# IC=19.964 IC/col=0.998 n_of_columns=20

specificity:

A |   7   0  24   0   0   0   7   3  10   0  96  82   3  92  72  96   0   3   0  96
C |   7   0  24  96   0  25   6  86   3   0   0   7   4   3   0   0   0  55  96   0
G |   3  96  24   0   0   0   3   1   3   0   0   6  84   0  23   0  96   4   0   0
T |  79   0  24   0  96  71  80   6  80  96   0   1   5   1   1   0   0  34   0   0

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updated Fri Dec 13 09:23:32 2024