1ipp_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE/DNA COMPLEX
reference	Monnat Jr. et al.
source	Physarum polycephalum
experiment	X-ray (resolution=2.20, R-factor=?)
structural superfamily	His-Me finger endonucleases;
reference complex	8vms_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1ipp_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 1ipp_B interface=54,56,60,62,64,66,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvvhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTRLK

Estimated binding specificities ?

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# IC=21.929 IC/col=1.096 n_of_columns=20

specificity:

A |   0   0  36   0   0   1   0   9   0   0  96  96   0  96  42  96   0   5   0  78
C |   0   0   6  96   0   9   0  80   0   0   0   0   9   0   1   0   0  48  96   5
G |   0  96  51   0   0   0   0   7   0   0   0   0  78   0  53   0  96   5   0   3
T |  96   0   3   0  96  86  96   0  96  96   0   0   9   0   0   0   0  38   0  10

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updated Sun Jan 4 21:28:27 2026