| structure name | CRYSTAL STRUCTURE OF DNAA DOMAINIV COMPLEXED WITH DNAABOX DNA (CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA) |
| reference | RIKEN Structural Genomics/Proteomics Initiative (RSGI) |
| source | ESCHERICHIA COLI |
| experiment | X-ray (resolution=2.10, R-factor=0.229) |
| structural superfamily | TrpR-like; |
| sequence family | Bacterial dnaA protein helixturnhelix; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RLPDHTTLH |
Estimated binding specificities ?
| readout + contact |  |
A | 67 0 9 0 96 9 96 C | 9 0 67 87 0 76 0 G | 11 0 11 0 0 9 0 T | 9 96 9 9 0 2 0scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: DNAA | ||
| TTATCCACA | PubMed | 1j1v_A(9.05e-11) |
| TNCACA | PubMed | 1j1v_A(7.04e-06) |
| TTGTCCACA | PubMed | 1j1v_A(5.89e-07) |
| TTTTCCACA | PubMed | 1j1v_A(5.89e-07) |
| TCCACA | PubMed | 1j1v_A(9.80e-10) |
| CCGTTCACA | PubMed | 1j1v_A(2.46e-03) |
| TCCCCA | PubMed | 1j1v_A(7.57e-05) |
| TTATACACA | PubMed | 1j1v_A(7.46e-06) |
| CCTGTGGATAACA | PubMed | 1j1v_A(1.94e-09) |
| TGTGNAT | PubMed | 1j1v_A(2.82e-08) |
| TGTTATCCACAGG | PubMed | 1j1v_A(1.94e-09) |
| TTNCACA | PubMed | 1j1v_A(5.71e-05) |
| TTATCCAAA | PubMed | 1j1v_A(3.45e-06) |
| TTCAC | PubMed | 1j1v_A(7.02e-03) |
| TGATCCACA | PubMed | 1j1v_A(9.05e-11) |
| TGGATCAG | PubMed | 1j1v_A(1.74e-04) |
| site | source | matches (E-value) |
Dendrogram of similar interfaces ?
matrix formatRALTPTDCHGTCTCLTHT---------- L +-----------1j1v_A +-----------3 ----------------NT----NAIARG L ! ! +1b72_B +-4 +----------2 ----------------NT----NAITRG L ! ! +5zjt_B ! ! ------HCRGRGQAQGKG---------- L --5 +-----------------------2glo_A ! ----------KGTCKGTCHT-------- L ! +4wuh_B +-------------------------1 ------TC--KTTCKGTCHTST------ L +7ve5_B |
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updated Mon Dec 16 17:56:54 2024