1j4w_A : 3D-footprint complex

structure name	COMPLEX OF THE KH3 AND KH4 DOMAINS OF FBP WITH A SINGLE_STRANDED 29MER DNA OLIGONUCLEOTIDE FROM THE FUSE ELEMENT OF THE C-MYC ONCOGENE (FUSE BINDING PROTEIN)
source	HOMO SAPIENS
experiment	NMR
structural superfamily	Eukaryotic type KH-domain KH-domain type I;
sequence family	KH domain;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1j4w_A interface=11,14,18,37,38,48,86,88,90,97,107,109,110, gshmidvpipRfaVgivIgrngemikkiqndagvriQFkpddgttpeRiaqitgppdraqhaaeiitdllrsvqqefnfivptgkTgLiIgkggetIksisqqsgaRiELqrnpppnadpnmklftirgtpqqidyarqlieeki
interface signature	RVIQFRTLIIREL

Estimated binding specificities ?

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# IC=11.096 IC/col=0.793 n_of_columns=14

specificity:

A |  16  96   0   0  24   0  16  24  24  24   0   0   0   0
C |  13   0   0   0  24  96  54  24  24  24   0   0   0   0
G |  13   0   0   0  24   0  13  24  24  24   0   0   0   0
T |  54   0  96  96  24   0  13  24  24  24  96  96  96  96

scan!

Dendrogram of similar interfaces ?

matrix format

  
  ----RTVTITIT--IT--QTFT----RT------------TALTIAITRCECLT   L   +--------------1j4w_A    
                                                               ! 
  ------ACSTIC--ICRCKCIC--ECRC--------------------------   L --3              +1zzi_A    
                                                               !            +-1 
  ------VCSCICKCVCRC------ICRCPANAFAKCKCDC--------------       +------------2 +3vke_A    
                                                                            ! 
  TTRT----SAICKAVCRC----NTICRC--------------------------   L                +-2axy_C

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updated Sun Aug 3 05:37:45 2025