1jb7_B : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

Dendrogram of similar interfaces ?

matrix format

structure name	DNA G-QUARTETS IN A 1.86 A RESOLUTION STRUCTURE OF AN OXYTRICHA NOVA TELOMERIC PROTEIN-DNA COMPLEX (TELOMERE-BINDING PROTEIN BETA SUBUNIT)
reference	Horvath et al.
source	STERKIELLA NOVA
experiment	X-ray (resolution=1.86, R-factor=0.232)
structural superfamily	Nucleic acid-binding proteins;
sequence family	Telomerebinding protein beta subunit TEBP;
redundant complexes	1otc
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1jb7_B interface=36,37,40,41,43,50,98,101,126,132,137, qqqsafkqlytelfnnegdfskvssnlkkplkcyvKEsyPHfLvtdgyfFvapyftkeavnefhakfpnvnivdltdkvivinnwslelrrvnsaevFtsYanlearlivhsfkpnlqerlnptrYpvnlfRddefKttiqhfrhtalqaainktvkgdnlvdiskvadaagkkgkvdagivkasaskgdefsdfsfkegntatlkiadifvqekg

  
  KTEGPGHGLG------FG--FGYGYTRGKG   L                                 +2i0q_B    
                                                +--------------------1 
  KTEGPGHGLG------FG--FGYGYGRGKG   L   +--------2                    +1jb7_B    
                                       !        ! 
  ------TTATNTTTATFTNT----------   L --3        +--------------------6bhx_B    
                                       ! 
  --EGPGHGLG------FG--FGYTYTRTKT   L   +-----------------------------1ph6_B

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updated Thu Sep 12 14:46:06 2024