1je8_AB : 3D-footprint complex

structure name	TWO-COMPONENT RESPONSE REGULATOR NARL/DNA COMPLEX: DNA BENDING FOUND IN A HIGH AFFINITY SITE
reference	Kaczor-Grzeskowiak et al. Nat.Struct.Biol. 9 771 2002
source	Escherichia coli
experiment	X-ray (resolution=2.12, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1je8_A interface=35,36,38,39,40,42, rdvnqltprerdilkliaqglpnkmiarrlditeSTvKVHvKhmlkkmklksrveaavwvhqerif > 1je8_B interface=35,36,38,39,40,42, rdvnqltprerdilkliaqglpnkmiarrlditeSTvKVHvKhmlkkmklksrveaavwvhqerif
interface signature	STKVHK/STKVHK

Estimated binding specificities ?

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# IC=11.921 IC/col=0.745 n_of_columns=16

specificity:

A |   0  63   0   0  24  96  24  24  24  24   0  17   0   0   8  96
C |   0   8  96  96  24   0  24  24  24  24   0  10   0   0   8   0
G |   0  17   0   0  24   0  24  24  24  24   0  61  96  96   8   0
T |  96   8   0   0  24   0  24  24  24  24  96   8   0   0  72   0

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updated Mon Sep 9 12:30:59 2024