1je8_EF : 3D-footprint complex

structure name	TWO-COMPONENT RESPONSE REGULATOR NARL/DNA COMPLEX: DNA BENDING FOUND IN A HIGH AFFINITY SITE
reference	Kaczor-Grzeskowiak et al. Nat.Struct.Biol. 9 771 2002
source	Escherichia coli
experiment	X-ray (resolution=2.12, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1je8_E interface=36,37,39,40,41,43, erdvnqltprerdilkliaqglpnkmiarrlditeSTvKVHvKhmlkkmklksrveaavwvhqerif > 1je8_F interface=35,36,38,39,40,42, rdvnqltprerdilkliaqglpnkmiarrlditeSTvKVHvKhmlkkmklksrveaavwvhqerif
interface signature	STKVHK/STKVHK

Estimated binding specificities ?

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# IC=10.435 IC/col=0.652 n_of_columns=16

specificity:

A |   0  69   0   0  24  69  24  24  24  24   1  24   0   0   8  96
C |   0   8  96  96  24   8  24  24  24  24   8  24   0   0  11   0
G |   0  11   0   0  24  11  24  24  24  24   0  24  96  96   8   0
T |  96   8   0   0  24   8  24  24  24  24  87  24   0   0  69   0

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updated Mon Sep 9 12:31:11 2024