1jt0_ABCD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A COOPERATIVE QACR-DNA COMPLEX
reference	Schumacher et al. 'EMBO 21 1210 2002
source	STAPHYLOCOCCUS AUREUS
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	Tetracyclin repressor-like, C-terminal domain;Homeodomain-like;
reference complex	1jt0_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1jt0_A interface=24,34,35,37,39,40, nlkdkilgvakelfikngynattTgeivklsesSKgNlYYhfktkenlfleilnieeskwqeqwkkeqikaktnrekfylynelsltteyyyplqnaiiefyteyyktnsinekmnklenkyidayhvifkegnlngewsindvnavskiaanavngivtftheqnineriklmnkfsqiflnglskh > 1jt0_B interface=24,34,35,37,39,40, nlkdkilgvakelfikngynattTgeivklsesSKgNlYYhfktkenlfleilnieeskwqeqwkkeqikaktnrekfylynelsltteyyyplqnaiiefyteyyktnsinekmnklenkyidayhvifkegnlngewsindvnavskiaanavngivtftheqnineriklmnkfsqiflnglskh > 1jt0_C interface=24,34,35,37,39,40, nlkdkilgvakelfikngynattTgeivklsesSKgNlYYhfktkenlfleilnieeskwqeqwkkeqikaktnrekfylynelsltteyyyplqnaiiefyteyyktnsinekmnklenkyidayhvifkegnlngewsindvnavskiaanavngivtftheqnineriklmnkfsqiflnglskh > 1jt0_D interface=24,34,35,37,39,40, nlkdkilgvakelfikngynattTgeivklsesSKgNlYYhfktkenlfleilnieeskwqeqwkkeqikaktnrekfylynelsltteyyyplqnaiiefyteyyktnsinekmnklenkyidayhvifkegnlngewsindvnavskiaanavngivtftheqnineriklmnkfsqiflngl
interface signature	TSKNYY/TSKNYY/TSKNYY/TSKNYY

Estimated binding specificities ?

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# IC=19.899 IC/col=0.904 n_of_columns=22

specificity:

A |  90   0  24   9  96   0   0  24  85   0   0   0  96  24  24   0   0   0  15  13  96   2
C |   1   1  24  13   0  96  96  24   1   0  96   0   0  24  24   0   0   0  51  17   0   1
G |   4   1  24  59   0   0   0  24   3   0   0  96   0  24  24  96  96   0  17   3   0   1
T |   1  94  24  15   0   0   0  24   7  96   0   0   0  24  24   0   0  96  13  63   0  92

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updated Mon Sep 9 12:32:24 2024