1jt0_ABCD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A COOPERATIVE QACR-DNA COMPLEX
reference	Schumacher et al. 'EMBO 21 1210 2002
source	STAPHYLOCOCCUS AUREUS
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	Tetracyclin repressor-like, C-terminal domain;Homeodomain-like;
reference complex	1jt0_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1jt0_A interface=24,34,35,37,39,40, nlkdkilgvakelfikngynattTgeivklsesSKgNlYYhfktkenlfleilnieeskwqeqwkkeqikaktnrekfylynelsltteyyyplqnaiiefyteyyktnsinekmnklenkyidayhvifkegnlngewsindvnavskiaanavngivtftheqnineriklmnkfsqiflnglskh > 1jt0_B interface=24,34,35,37,39,40, nlkdkilgvakelfikngynattTgeivklsesSKgNlYYhfktkenlfleilnieeskwqeqwkkeqikaktnrekfylynelsltteyyyplqnaiiefyteyyktnsinekmnklenkyidayhvifkegnlngewsindvnavskiaanavngivtftheqnineriklmnkfsqiflnglskh > 1jt0_C interface=24,34,35,37,39,40, nlkdkilgvakelfikngynattTgeivklsesSKgNlYYhfktkenlfleilnieeskwqeqwkkeqikaktnrekfylynelsltteyyyplqnaiiefyteyyktnsinekmnklenkyidayhvifkegnlngewsindvnavskiaanavngivtftheqnineriklmnkfsqiflnglskh > 1jt0_D interface=24,34,35,37,39,40, nlkdkilgvakelfikngynattTgeivklsesSKgNlYYhfktkenlfleilnieeskwqeqwkkeqikaktnrekfylynelsltteyyyplqnaiiefyteyyktnsinekmnklenkyidayhvifkegnlngewsindvnavskiaanavngivtftheqnineriklmnkfsqiflngl
interface signature	TSKNYY/TSKNYY/TSKNYY/TSKNYY

Estimated binding specificities ?

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# IC=18.112 IC/col=0.823 n_of_columns=22

specificity:

A |  90   1  70  12  96   0   0  24  24   0   0   0  89  24  24   2   0   0   3  24  89   2
C |   2   2   8   8   0  96  94  24  24   2  96   0   2  24  24   2   0   0  75  24   3   8
G |   2   2  10  70   0   0   2  24  24   2   0  96   3  24  24  89  96   0  10  24   2   2
T |   2  91   8   6   0   0   0  24  24  92   0   0   2  24  24   3   0  96   8  24   2  84

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updated Sun Jan 4 21:30:52 2026