1jt0_ABCD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A COOPERATIVE QACR-DNA COMPLEX
reference	Schumacher et al. 'EMBO 21 1210 2002
source	STAPHYLOCOCCUS AUREUS
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	Tetracyclin repressor-like, C-terminal domain;Homeodomain-like;
reference complex	1jt0_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1jt0_A interface=24,34,35,37,39,40, nlkdkilgvakelfikngynattTgeivklsesSKgNlYYhfktkenlfleilnieeskwqeqwkkeqikaktnrekfylynelsltteyyyplqnaiiefyteyyktnsinekmnklenkyidayhvifkegnlngewsindvnavskiaanavngivtftheqnineriklmnkfsqiflnglskh > 1jt0_B interface=24,34,35,37,39,40, nlkdkilgvakelfikngynattTgeivklsesSKgNlYYhfktkenlfleilnieeskwqeqwkkeqikaktnrekfylynelsltteyyyplqnaiiefyteyyktnsinekmnklenkyidayhvifkegnlngewsindvnavskiaanavngivtftheqnineriklmnkfsqiflnglskh > 1jt0_C interface=24,34,35,37,39,40, nlkdkilgvakelfikngynattTgeivklsesSKgNlYYhfktkenlfleilnieeskwqeqwkkeqikaktnrekfylynelsltteyyyplqnaiiefyteyyktnsinekmnklenkyidayhvifkegnlngewsindvnavskiaanavngivtftheqnineriklmnkfsqiflnglskh > 1jt0_D interface=24,34,35,37,39,40, nlkdkilgvakelfikngynattTgeivklsesSKgNlYYhfktkenlfleilnieeskwqeqwkkeqikaktnrekfylynelsltteyyyplqnaiiefyteyyktnsinekmnklenkyidayhvifkegnlngewsindvnavskiaanavngivtftheqnineriklmnkfsqiflngl
interface signature	TSKNYY/TSKNYY/TSKNYY/TSKNYY

Estimated binding specificities ?

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# IC=18.655 IC/col=0.848 n_of_columns=22

specificity:

A |  90   0  59  17  96   0   0  24  24   0   0   0  94  24  24   0   0   0   3  24  90   1
C |   4   1  11  13   0  96  95  24  24   0  96   0   1  24  24   1   0   0  69  24   1   1
G |   1   0  15  55   0   0   1  24  24   0   0  96   1  24  24  95  96   0  11  24   4   4
T |   1  95  11  11   0   0   0  24  24  96   0   0   0  24  24   0   0  96  13  24   1  90

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updated Wed Jun 24 09:35:01 2026