1jt0_ABCD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A COOPERATIVE QACR-DNA COMPLEX
reference	Schumacher et al. 'EMBO 21 1210 2002
source	STAPHYLOCOCCUS AUREUS
experiment	X-ray (resolution=2.90, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1jt0_A interface=24,34,35,37,39,40, nlkdkilgvakelfikngynattTgeivklsesSKgNlYYhfktkenlfleilnieeskwqeqwkkeqikaktnrekfylynelsltteyyyplqnaiiefyteyyktnsinekmnklenkyidayhvifkegnlngewsindvnavskiaanavngivtftheqnineriklmnkfsqiflnglskh > 1jt0_B interface=24,34,35,37,39,40, nlkdkilgvakelfikngynattTgeivklsesSKgNlYYhfktkenlfleilnieeskwqeqwkkeqikaktnrekfylynelsltteyyyplqnaiiefyteyyktnsinekmnklenkyidayhvifkegnlngewsindvnavskiaanavngivtftheqnineriklmnkfsqiflnglskh > 1jt0_C interface=24,34,35,37,39,40, nlkdkilgvakelfikngynattTgeivklsesSKgNlYYhfktkenlfleilnieeskwqeqwkkeqikaktnrekfylynelsltteyyyplqnaiiefyteyyktnsinekmnklenkyidayhvifkegnlngewsindvnavskiaanavngivtftheqnineriklmnkfsqiflnglskh > 1jt0_D interface=24,34,35,37,39,40, nlkdkilgvakelfikngynattTgeivklsesSKgNlYYhfktkenlfleilnieeskwqeqwkkeqikaktnrekfylynelsltteyyyplqnaiiefyteyyktnsinekmnklenkyidayhvifkegnlngewsindvnavskiaanavngivtftheqnineriklmnkfsqiflngl
interface signature	TSKNYY/TSKNYY/TSKNYY/TSKNYY

Estimated binding specificities ?

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# IC=19.882 IC/col=0.904 n_of_columns=22

specificity:

A |  92   0  65  15  96   0   0  24  24   0   0   0  96  13  24   0   0   0   3  24  94   1
C |   3   0  13  13   0  96  96  24  24   0  96   0   0  17  24   0   0   0  86  24   1   4
G |   1   0  15  55   0   0   0  24  24   0   0  96   0  15  24  96  96   0   4  24   1   1
T |   0  96   3  13   0   0   0  24  24  96   0   0   0  51  24   0   0  96   3  24   0  90

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updated Fri Dec 13 09:25:59 2024