1kb2_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF VDR DNA-BINDING DOMAIN BOUND TO MOUSE OSTEOPONTIN (SPP) RESPONSE ELEMENT
reference	Shaffer et al. 'EMBO 21 2242 2002
source	Homo sapiens
experiment	X-ray (resolution=2.70, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1kb2_A interface=21,24,28,29,82, ricgvcgdratgfhfnamtcEgcKgffRRsmkrkalftcpfngdcritkdnrrhcqacrlkrcvdigmmkefiltdeevqrKremilkr > 1kb2_B interface=21,24,28,29, ricgvcgdratgfhfnamtcEgcKgffRRsmkrkalftcpfngdcritkdnrrhcqacrlkrcvdigmmkefiltdeevqrkrem
interface signature	EKRRK/EKRR

Estimated binding specificities ?

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# IC=9.304 IC/col=0.665 n_of_columns=14

specificity:

A |  13  24   3  92   0   5  24  24  24   3   3  72  93   0
C |  16  24  93   1  96  72  24  24  24   4   5   3   3  96
G |   5  24   0   3   0   3  24  24  24   3  16  16   0   0
T |  62  24   0   0   0  16  24  24  24  86  72   5   0   0

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updated Fri Dec 13 09:27:47 2024