1kb6_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF VDR DNA-BINDING DOMAIN BOUND TO RAT OSTEOCALCIN (OC) RESPONSE ELEMENT
reference	Shaffer et al. 'EMBO 21 2242 2002
source	Homo sapiens
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	1kb2_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1kb6_A interface=22,25,29,30,83, pricgvcgdratgfhfnamtcEgcKgffRRsmkrkalftcpfngdcritkdnrrhcqacrlkrcvdigmmkefiltdeevqrKremilkrkeee > 1kb6_B interface=22,25,29,30, pricgvcgdratgfhfnamtcEgcKgffRRsmkrkalftcpfngdcritkdnrrhcqacrlkrcvdigmmkefiltdeevqrkremilkrkeeealkdslr
interface signature	EKRRK/EKRR

Estimated binding specificities ?

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# IC=8.926 IC/col=0.595 n_of_columns=15

specificity:

A |   7   0   0  14  24  24  24  24  24  60   0   0  64   0  67
C |   1   0   0  14  24  24  24  24  24   9   0   0  10  96   7
G |  85  96  96  14  24  24  24  24  24  17  96  96  12   0  12
T |   3   0   0  54  24  24  24  24  24  10   0   0  10   0  10

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updated Sun Jan 4 21:33:20 2026