1kb6_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF VDR DNA-BINDING DOMAIN BOUND TO RAT OSTEOCALCIN (OC) RESPONSE ELEMENT
reference	Shaffer et al. 'EMBO 21 2242 2002
source	Homo sapiens
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	1kb2_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1kb6_A interface=22,25,29,30,83, pricgvcgdratgfhfnamtcEgcKgffRRsmkrkalftcpfngdcritkdnrrhcqacrlkrcvdigmmkefiltdeevqrKremilkrkeee > 1kb6_B interface=22,25,29,30, pricgvcgdratgfhfnamtcEgcKgffRRsmkrkalftcpfngdcritkdnrrhcqacrlkrcvdigmmkefiltdeevqrkremilkrkeeealkdslr
interface signature	EKRRK/EKRR

Estimated binding specificities ?

readout + contact

# IC=8.844 IC/col=0.590 n_of_columns=15

specificity:

A |  10   0  24   0   0   6  24  24  24  27  24  50   0   0   0
C |  14   0  24  96  96  48  24  24  24  10  24  27  96  96  90
G |  10  96  24   0   0   7  24  24  24   9  24  11   0   0   2
T |  62   0  24   0   0  35  24  24  24  50  24   8   0   0   4

scan!

home
updated Mon Sep 9 12:34:37 2024