1kb6_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF VDR DNA-BINDING DOMAIN BOUND TO RAT OSTEOCALCIN (OC) RESPONSE ELEMENT
reference	Shaffer et al. 'EMBO 21 2242 2002
source	Homo sapiens
experiment	X-ray (resolution=2.70, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1kb6_A interface=22,25,29,30,83, pricgvcgdratgfhfnamtcEgcKgffRRsmkrkalftcpfngdcritkdnrrhcqacrlkrcvdigmmkefiltdeevqrKremilkrkeee > 1kb6_B interface=22,25,29,30, pricgvcgdratgfhfnamtcEgcKgffRRsmkrkalftcpfngdcritkdnrrhcqacrlkrcvdigmmkefiltdeevqrkremilkrkeeealkdslr
interface signature	EKRRK/EKRR

Estimated binding specificities ?

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# IC=8.837 IC/col=0.589 n_of_columns=15

specificity:

A |  10   0  24   0   0   5  24  24  24  10  24  45   0   0   1
C |   8   0  24  96  96  40  24  24  24  16  24  21  96  96  88
G |   8  96  24   0   0   9  24  24  24  14  24   8   0   0   2
T |  70   0  24   0   0  42  24  24  24  56  24  22   0   0   5

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updated Fri Dec 13 09:28:08 2024