1lb2_ABE : 3D-footprint complex

structure name	STRUCTURE OF THE E. COLI ALPHA C-TERMINAL DOMAIN OF RNA POLYMERASE IN COMPLEX WITH CAP AND DNA
reference	Parkinson et al. Science 297 1562 2002
source	ESCHERICHIA COLI
experiment	X-ray (resolution=3.10, R-factor=?)
structural superfamily	C-terminal domain of RNA polymerase alpha subunit;
reference complex	3n4m_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1lb2_A interface=162,171,172,173,174,177, ptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemilsylnqgdfigelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqmarrlqvtsekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrQeigqivgcSRETvgRilkmledqnlisahgktivvygtr > 1lb2_B interface=16, dpillrpvddleltvRsanclkaeaihyigdlvqrtevellktpnlgkkslteikdvlasrglslgmrlenw > 1lb2_E interface=16, dpillrpvddleltvRsanclkaeaihyigdlvqrtevellktpnlgkkslteikdvlasrglslg
interface signature	QSRETR/R/R

Estimated binding specificities ?

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# IC=8.025 IC/col=0.472 n_of_columns=17

specificity:

A |   0   0  90   0  89  24  24  24  22  48  24  24  24  24  24  59  93
C |   0  96   2  96   3  24  24  24  20  18  24  24  24  24  24   3   2
G |   0   0   2   0   2  24  24  24  12  14  24  24  24  24  24   2   0
T |  96   0   2   0   2  24  24  24  42  16  24  24  24  24  24  32   1

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updated Mon Sep 9 12:47:14 2024