| structure name | CRYSTAL STRUCTURE OF MYOD BHLH DOMAIN BOUND TO DNA: PERSPECTIVES ON DNA RECOGNITION AND IMPLICATIONS FOR TRANSCRIPTIONAL ACTIVATION (PROTEIN MYOD BHLH DOMAIN) |
| reference | Weintraub et al. 'Cell(Cambridge,Mass.)' 77 451 1994 |
| source | MUS MUSCULUS |
| experiment | X-ray (resolution=2.80, R-factor=0.253) |
| structural superfamily | HLH, helix-loop-helix DNA-binding domain; |
| sequence family | Helixloophelix DNAbinding domain; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence |
No structural evidence for specific binding to DNA (<4 informative columns)
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: MYOD | ||
| CANNTG | PubMed | 1mdy_AB(1.13e-03), 1mdy_CD(3.37e-03) |
| CAGGTG | PubMed | 1mdy_AB(1.13e-03), 1mdy_CD(3.37e-03) |
| CAGCTG | PubMed | 1mdy_AB(1.13e-03), 1mdy_CD(3.37e-03) |
| CACGTG | PubMed | 1mdy_AB(1.13e-03), 1mdy_CD(3.37e-03) |
| CAGATG | PubMed | 1mdy_AB(1.13e-03), 1mdy_CD(3.37e-03) |
Dendrogram of similar interfaces ?
matrix format--HGNT--EC--RCRG-- L +----------------------7d8t_A ! --HGNTMTEA--RCRG-- L --3 +-1nlw_D ! +-----------------1 ----HG----ET--RCRG L +--2 +-5gnj_I ! NTRGEC--RC-------- +-------------------2ql2_A |
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updated Thu Sep 12 14:56:56 2024