1mhd_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A SMAD MH1 DOMAIN BOUND TO DNA
reference	'Cell(Cambridge,Mass.)' 94 585 1998
source	HOMO SAPIENS
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	SMAD MH1 domain;
reference complex	5od6_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1mhd_A interface=65,67,72, pivkrllgwkkgeqngqeekwcekavkslvkklkktgqldelekaittqnvntkcitiprsldgRlQvshrKglphviycrlwrwpdlhshhelramelcefafnmkkdevcvnpyhyqrvet > 1mhd_B interface=65,67,72, pivkrllgwkkgeqngqeekwcekavkslvkklkktgqldelekaittqnvntkcitiprsldgRlQvshrKglphviycrlwrwpdlhshhelramelcefafnmkkdevcvnpyhyqrvet
interface signature	RQK/RQK

Estimated binding specificities ?

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# IC=10.087 IC/col=1.009 n_of_columns=10

specificity:

A |   0   0  12   0   0  96   0  64   0   6
C |   0   0   0  71   0   0   0   8  96   6
G |   0  96  12  19   0   0   7  12   0   6
T |  96   0  72   6  96   0  89  12   0  78

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updated Mon Sep 9 13:02:14 2024