1nvp_AC : 3D-footprint complex

structure name	HUMAN TFIIA/TBP/DNA COMPLEX
reference	Bleichenbacher et al. J.Mol.Biol. 332 783 2003
source	HOMO SAPIENS
experiment	X-ray (resolution=2.10, R-factor=?)
structural superfamily	TATA-box binding protein-like;Transcription factor IIA TFIIA, beta-barrel domain;
reference complex	1cdw_A 1nvp_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1nvp_A interface=9,11,39,54,56,62,64,99,101,130,131,145,147,153,155, sgivpqlqNiVstvnlgckldlktialrarnaeynpkrFaavimrireprttaLiFssgkmVcTgakseeqsrlaarkyarvvqklgfpakfldfkiqNmVgscdvkfpirleglvlthqqfssyepelFPgliyrmikprivlLiFvsgkvVlTgakvraeiyeafeniypilkgfrkt > 1nvp_C interface= dtenvvvcQyDkihrsknkwkfhlkdgimnlngrdyifSkaigdaew
interface signature	NVFLFVTNVFPLFVT/QDS

Estimated binding specificities ?

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# IC=9.607 IC/col=0.801 n_of_columns=12

specificity:

A |   8   4  24  24   4  96   4  96  82  87  96   4
C |   4   4  24  24   4   0   4   0   6   4   0  13
G |  80  82  24  24   4   0   6   0   4   0   0  75
T |   4   6  24  24  84   0  82   0   4   5   0   4

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updated Mon Sep 9 13:08:36 2024