1nvp_AC : 3D-footprint complex

structure name	HUMAN TFIIA/TBP/DNA COMPLEX
reference	Bleichenbacher et al. J.Mol.Biol. 332 783 2003
source	HOMO SAPIENS
experiment	X-ray (resolution=2.10, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1nvp_A interface=9,11,39,54,56,62,64,99,101,130,131,145,147,153,155, sgivpqlqNiVstvnlgckldlktialrarnaeynpkrFaavimrireprttaLiFssgkmVcTgakseeqsrlaarkyarvvqklgfpakfldfkiqNmVgscdvkfpirleglvlthqqfssyepelFPgliyrmikprivlLiFvsgkvVlTgakvraeiyeafeniypilkgfrkt > 1nvp_C interface= dtenvvvcQyDkihrsknkwkfhlkdgimnlngrdyifSkaigdaew
interface signature	NVFLFVTNVFPLFVT/QDS

Estimated binding specificities ?

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# IC=9.496 IC/col=0.791 n_of_columns=12

specificity:

A |   3   0   6   3   0  84   0  84  24  24   3  11
C |  76   0  11   3   0   3   0   6  24  24  84  76
G |  11   0   3   3   0   3   0   3  24  24   6   3
T |   6  96  76  87  96   6  96   3  24  24   3   6

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updated Fri Dec 13 10:03:56 2024