1nzb_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF WILD TYPE CRE RECOMBINASE-LOXP SYNAPSE
reference	Meyer et al. 'Nucleic 31 5449 2003
source	Enterobacteria phage P1
experiment	X-ray (resolution=3.10, R-factor=?)
structural superfamily	DNA breaking-rejoining enzymes;lambda integrase-like, N-terminal domain;
reference complex	7rhx_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1nzb_A interface=31,32,35,38,77,78,81,232,235,248,250,253,273,308, nlpalpvdatsdevrknlmdmfrdrqafseHTwkMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgqlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmlihigrtktlvstagvekalslgvtklverwisvsgvaddpnnylfcRvrKngvaapsatsqlStRalEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtNvnivmnyirnldsetgamvrlled > 1nzb_B interface=21,22,24,25,28,67,68,71,75,182,222,225,238,240,243,263,298,300, sdevrknlmdmfrdrqafseHTwKMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmlihigrtKtlvstagvekalslgvtklverwisvsgvaddpnnylfcRvrKngvaapsatsqlStRalEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtNvNivmnyirnldsetgamvrlled
interface signature	HTMSKTQRKSRERN/HTKMSKTQQKRKSRERNN

Estimated binding specificities ?

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# IC=25.970 IC/col=0.764 n_of_columns=34

specificity:

A |  75   9  24  24  24  24   2   0   0   0  88   0  96   0  24  82   4  96  24  24  12   0  96   0  96   0   0  88  24  24  24  24  88   1
C |   8  10  24  24  24  24   2  96   0   0   3   0   0   0  24   2   8   0  24  24   2   0   0   0   0  96   0   2  24  24  24  24   2   2
G |   8   5  24  24  24  24   4   0  96   0   0   0   0  96  24   7   2   0  24  24   5   0   0   0   0   0  96   4  24  24  24  24   2   0
T |   5  72  24  24  24  24  88   0   0  96   5  96   0   0  24   5  82   0  24  24  77  96   0  96   0   0   0   2  24  24  24  24   4  93

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updated Sun Jan 4 22:15:28 2026