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structure namePROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES
(CATABOLITE GENE ACTIVATOR PROTEIN)
referenceVojtechovsky et al.
sourceEscherichia coli
experimentX-ray (resolution=3.00, R-factor=0.252)
structural superfamilycAMP-binding domain-like;"Winged helix" DNA-binding domain;
sequence familyCyclic nucleotidebinding domain; Bacterial regulatory proteins, crp famil;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSRETR

Estimated binding specificities ?

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# IC=3.968 IC/col=0.794 n_of_columns=5 specificity:   
A |  11   0   9   9  96
C |   9   0   9  11   0
G |   9  96  11  67   0
T |  67   0  67   9   0
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updated Mon Dec 16 18:18:21 2024