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legend  pdf

structure namePROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES
(CATABOLITE GENE ACTIVATOR PROTEIN)
referenceEbright et al.
sourceEscherichia coli
experimentX-ray (resolution=3.00, R-factor=0.260)
structural superfamilycAMP-binding domain-like;"Winged helix" DNA-binding domain;
sequence familyCyclic nucleotidebinding domain; Bacterial regulatory proteins, crp famil;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSRDR

Estimated binding specificities ?

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# IC=2.917 IC/col=0.729 n_of_columns=4 specificity:   
A |  12  12  12  96
C |  12  60   0   0
G |  60  12  84   0
T |  12  12   0   0
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updated Mon Dec 16 18:18:35 2024