interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF THE GCM DOMAIN BOUND TO DNA
(MGCM1)
referenceMuller et al. 'Embo 22 1835 2003
sourceMUS MUSCULUS
experimentX-ray (resolution=2.85, R-factor=0.219)
structural superfamilyGCM domain;
sequence familyGCM motif protein;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureNTNHI

Estimated binding specificities ?

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# IC=4.434 IC/col=0.887 n_of_columns=5 specificity:   
A |   0   0   0  13  13
C |  96  96  96  13  54
G |   0   0   0  54  16
T |   0   0   0  16  13
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: GCM
ATGCGGGTPubMed1odh_A(1.69e-06)
CCCGCATPubMed1odh_A(7.33e-07)

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updated Sat Jan 10 04:51:48 2026