1pp8_FMU : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE T. VAGINALIS IBP39 INITIATOR BINDING DOMAIN (IBD) BOUND TO THE ALPHA-SCS INR ELEMENT
reference	Schumacher et al. 'Cell(Cambridge,Mass.)' 115 413 2003
source	Trichomonas vaginalis
experiment	X-ray (resolution=3.05, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	1pp7_U
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1pp8_F interface=24,25,27,80,81,84, dsndleasftsrlppeivaalkrKSsRdpnsrfprklhmlltylasnpqleeeiglswisdtefkmkkknvalvmgiklNTlnVnlrdlafeqlqhdkggwtqwkrsgftrns > 1pp8_M interface=25,26,28,81,82,84,85, mdsndleasftsrlppeivaalkrKSsRdpnsrfprklhmlltylasnpqleeeiglswisdtefkmkkknvalvmgiklNTlNVnlrdlafeqlqhdkggwtqwkrsgftrnsvfed > 1pp8_U interface=24,25,27,80,81,84,85, dsndleasftsrlppeivaalkrKSsRdpnsrfprklhmlltylasnpqleeeiglswisdtefkmkkknvalvmgiklNTlnVNlrdlafeqlqhdkggwtqwkrsgftr
interface signature	KSRNTV/KSRNTNV/KSRNTVN

Estimated binding specificities ?

readout + contact

# IC=20.944 IC/col=0.616 n_of_columns=34

specificity:

A |   0   0  24  90  24  24   0   1  69   7  24  24   1   0   0  96  24  24   0   1  24  24  24  24  24   0   5  90  24  24   0   4  24   0
C |   0   0  24   1  24  24   1   4   9  71  24  24   4   0   0   0  24  24   2   1  24  24  24  24  24   0   9   1  24  24   0   1  24  96
G |   1   0  24   1  24  24   0  90   9  11  24  24   9   0  96   0  24  24   0  93  24  24  24  24  24   0  71   1  24  24   0  90  24   0
T |  95  96  24   4  24  24  95   1   9   7  24  24  82  96   0   0  24  24  94   1  24  24  24  24  24  96  11   4  24  24  96   1  24   0

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updated Mon Sep 9 13:56:01 2024