1pyi_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A PPR1-DNA COMPLEX: DNA RECOGNITION BY PROTEINS CONTAINING A ZN2CYS6 BINUCLEAR CLUSTER
reference	Marmorstein et al.
source	Saccharomyces cerevisiae
experiment	X-ray (resolution=3.20, R-factor=?)
structural superfamily	Zn2/Cys6 DNA-binding domain;
reference complex	1pyi_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1pyi_A interface=11,12,13, srtackrcrlKKIkcdqefpsckrcaklevpcvsldpatgkdvprsyvffledrlavmmrvlkeygvdptkirgnipatsddepfdlk > 1pyi_B interface=11,12,13, srtackrcrlKKIkcdqefpsckrcaklevpcvsldpatgkdvprsyvffledrlavmmrvlkeygvdpt
interface signature	KKI/KKI

Estimated binding specificities ?

readout + contact

# IC=5.849 IC/col=0.487 n_of_columns=12

specificity:

A |  13  13   0  24  24  24  24  24  24   0   0   0
C |  57  13   0  24  24  24  24  24  24  96  96   0
G |  13  57  96  24  24  24  24  24  24   0   0  96
T |  13  13   0  24  24  24  24  24  24   0   0   0

scan!

home
updated Mon Sep 9 13:57:59 2024