1qln_A : 3D-footprint complex

structure name	STRUCTURE OF A TRANSCRIBING T7 RNA POLYMERASE INITIATION COMPLEX (BACTERIOPHAGE T7 RNA POLYMERASE)
reference	Cheetham et al. Science 286 2305 1999
source	BACTERIOPHAGE T7
experiment	X-ray (resolution=2.40, R-factor=0.223)
structural superfamily	DNA/RNA polymerases;
sequence family	DNAdependent RNA polymerase;
reference complex	1msw_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1qln_A interface=75,77,114,118,185,210,213,216,219,725,727,735,737,739,740,741, iakndfsdielaaipfntladhygerlareqlalehesyemgearfrkmfplittllpkmiarindwfeevkakRgKrptafqflqeikpeavayitikttlacltsadnttvQavaSaigraiedearfgrirdleakhfkknveeqlnkrvghvykkafmqvveadmlskgllggeawsswhKedsihvgvrciemliestgmvslhRqnAgvVgqDsetielapeyaeaiatragalagispmfqpcvvppkpwtgitgggywangrrplalvrthskkalmryedvympevykainiaqntawkinkkvlavanvitkwkhcpvedipaiereelpmkpedidmnpealtawkraaaavyrkdkarksrrislefmleqankfanhkaiwfpynmdwrgrvyavsmfnpqgndmtkglltlakgkpigkegyywlkihgancagvdkvpfperikfieenhenimacaksplentwwaeqdspfcflafcfeyagvqhhglsyncslplafdgscsgiqhfsamlrdevggravnllpsetvqdiygivakkvneilqadaingtdnevvtvtdentgeisekvklgtkalagqwlaygvtrsvtkrsvmtlaygskefgfrqqvledtiqpaidsgkglmftqpnqaagymakliwesvsvtvvaaveamnwlksaakllaaevkdkktgeilrkrcavhwvtpdgfpvwqeykkpiqtRlNlmflgqfRlQpTINtnkdseidahkqesgiapnfvhsqdgshlrktvvwahekygiesfalihdsfgtipadaanlfkavretmvdtyescdvladfydqfadqlhesqldkmpalpakgnlnlrdilesdfafa
interface signature	RKQSKRAVDRNRQTIN

Estimated binding specificities ?

readout + contact

# IC=11.336 IC/col=0.872 n_of_columns=13

specificity:

A |   0  79  73  24  90  24  11  73   0   0   0  96   0
C |   5   5   7  24   0  24   7   5  96   0  96   0  96
G |   0   7   5  24   5  24  73  13   0   0   0   0   0
T |  91   5  11  24   1  24   5   5   0  96   0   0   0

scan!

home
updated Thu Sep 12 15:21:22 2024