structure name | DDTTP-TRAPPED CLOSED TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS (DNA POLYMERASE I) |
reference | Mitaxov et al. Proc.Natl.Acad.Sci.USA 96 9491 1999 |
source | Thermus aquaticus |
experiment | X-ray (resolution=2.30, R-factor=0.227) |
structural superfamily | DNA/RNA polymerases;Ribonuclease H-like; |
sequence family | DNA polymerase family A; Taq polymerase, exonuclease; |
redundant complexes | 4ktq 3ktq 1qsy 2ktq 1qss 1tau |
reference complex | 6fbc_A |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | KTYRNNETFYMRNQH |
Estimated binding specificities ?
readout + contact |
A | 20 19 11 14 C | 19 38 9 52 G | 38 19 67 14 T | 19 20 9 16scan! |
Dendrogram of similar interfaces ?
matrix format------------------------KG--YG--------RGNGNG--TAFA--YAMASARA--------EARAQA--HG L +--1qtm_A +-----2 ------------DTKT--------KC------------RG--NTRGAAFA--YCIA----LAQTNANT----QC---- L ! ! +-2hhv_A +--------------3 +-1 LCNGKGYGMGEG------------------SGHGVC------------------------------------------ ! ! +-1kln_A --4 ! --------------------------KT----------RTNG----------YA------------------QA---- L ! +--------1x9m_A ! ----------------ATYTDGKG------------RC------------TTYT--------------------HT-- L +-----------------------1msw_D |
home
updated Mon Dec 18 05:55:16 2023