1rio_ABH : 3D-footprint complex

structure name	STRUCTURE OF BACTERIOPHAGE LAMBDA CI-NTD IN COMPLEX WITH SIGMA- REGION4 OF THERMUS AQUATICUS BOUND TO DNA
reference	Hochschild et al. Mol.Cell 13 45 2004
source	THERMUS AQUATICUS / ENTEROBACTERIA PHAGE LAMBDA
experiment	X-ray (resolution=2.30, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	1rio_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1rio_A interface=3,4,44,45,55, stKKkpltqeqledarrlkaiyekkknelglsqesvadkmgmgQSgvgalfngiNalnaynaallakilkvsveefspsiareiyemyeavhhhhhh > 1rio_B interface=4,44,45,55, stkKkpltqeqledarrlkaiyekkknelglsqesvadkmgmgQSgvgalfngiNalnaynaallakilkvsveefspsiareiyemyeavhhhhh > 1rio_H interface=43,44,45,46,48,49, seelekalsklsereamvlklrkglidgrehtleevgayfgvTRERiRQienkalrklkyh
interface signature	KKQSN/KQSN/TRERRQ

Estimated binding specificities ?

readout + contact

# IC=21.166 IC/col=1.008 n_of_columns=21

specificity:

A |   9   0   5   0  96  96   1   0  68   0   3  24   0   0   0   0   6   3  24   0  87
C |   6   0   3  96   0   0   3  10  10  96   3  24   0  96   0   0  10   0  24   0   3
G |   6  96   3   0   0   0  92   0  10   0   3  24  96   0  96  96   5  93  24   0   3
T |  75   0  85   0   0   0   0  86   8   0  87  24   0   0   0   0  75   0  24  96   3

scan!

home
updated Fri Dec 13 11:04:24 2024