interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF BACTERIOPHAGE LAMBDA CI-NTD IN COMPLEX WITH SIGMA- REGION4 OF THERMUS AQUATICUS BOUND TO DNA
referenceHochschild et al. Mol.Cell 13 45 2004
sourceTHERMUS AQUATICUS / ENTEROBACTERIA PHAGE LAMBDA
experimentX-ray (resolution=2.30, R-factor=?)
structural superfamilylambda repressor-like DNA-binding domains;
reference complex1rio_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKKQSN/KQSN/TRERRQ

Estimated binding specificities ?

readout + contactlogo
# IC=21.166 IC/col=1.008 n_of_columns=21 specificity:   
A |   9   0   5   0  96  96   1   0  68   0   3  24   0   0   0   0   6   3  24   0  87
C |   6   0   3  96   0   0   3  10  10  96   3  24   0  96   0   0  10   0  24   0   3
G |   6  96   3   0   0   0  92   0  10   0   3  24  96   0  96  96   5  93  24   0   3
T |  75   0  85   0   0   0   0  86   8   0  87  24   0   0   0   0  75   0  24  96   3
scan!

home
updated Fri Dec 13 11:04:24 2024