interface graph thumbnail
legend  pdf

structure nameCATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA COMPLEX + ADENOSINE-3',5'- CYCLIC-MONOPHOSPHATE
(PROTEIN CATABOLITE GENE ACTIVATOR PROTEIN CAP)
referenceVojtechovsky et al. Nat.Struct.Biol. 3 837 1996
sourceEscherichia coli
experimentX-ray (resolution=2.70, R-factor=?)
structural superfamilycAMP-binding domain-like;"Winged helix" DNA-binding domain;
sequence familyCyclic nucleotidebinding domain; Bacterial regulatory proteins, crp famil;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSRER

Estimated binding specificities ?

readout + contactlogo
# IC=4.066 IC/col=0.813 n_of_columns=5 specificity:   
A |  12   3   4   0  81
C |  12   5   4   0   4
G |  12  85   7  96   7
T |  60   3  81   0   4
scan!

home
updated Mon Dec 16 18:46:18 2024