1rz9_ABCDE : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF AAV REP COMPLEXED WITH THE REP-BINDING SEQUENCE
reference	Hickman et al.
source	Adeno-associated virus - 5
experiment	X-ray (resolution=3.10, R-factor=?)
structural superfamily	Origin of replication-binding domain, RBD-like;
reference complex	1uut_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1rz9_A interface=102,106,137,138, matfyevivrvpfdveehlpgisdsfvdwvtgqiwelppesdlnltlveqpqltvadrirrvflyewnkfskqeskffvqfekgseyfhlhtlvetsgissMvlgRyvsqiraqlvkvvfqgiepqindwvaitkvKKggankvvdsgyipayllpkvqpelqwawtnldeyklaalnleerkrlvaqflaes > 1rz9_B interface=102,106,137,138, matfyevivrvpfdveehlpgisdsfvdwvtgqiwelppesdlnltlveqpqltvadrirrvflyewnkfskqeskffvqfekgseyfhlhtlvetsgissMvlgRyvsqiraqlvkvvfqgiepqindwvaitkvKKggankvvdsgyipayllpkvqpelqwawtnldeyklaalnleerkrlvaqflaes > 1rz9_C interface=102,106,137,138, matfyevivrvpfdveehlpgisdsfvdwvtgqiwelppesdlnltlveqpqltvadrirrvflyewnkfskqeskffvqfekgseyfhlhtlvetsgissMvlgRyvsqiraqlvkvvfqgiepqindwvaitkvKKggankvvdsgyipayllpkvqpelqwawtnldeyklaalnleerkrlvaqflaes > 1rz9_D interface=102,106,137,138, matfyevivrvpfdveehlpgisdsfvdwvtgqiwelppesdlnltlveqpqltvadrirrvflyewnkfskqeskffvqfekgseyfhlhtlvetsgissMvlgRyvsqiraqlvkvvfqgiepqindwvaitkvKKggankvvdsgyipayllpkvqpelqwawtnldeyklaalnleerkrlvaqflaes > 1rz9_E interface=102,106,137, matfyevivrvpfdveehlpgisdsfvdwvtgqiwelppesdlnltlveqpqltvadrirrvflyewnkfskqeskffvqfekgseyfhlhtlvetsgissMvlgRyvsqiraqlvkvvfqgiepqindwvaitkvKkggankvvdsgyipayllpkvqpelqwawtnldeyklaalnleerkrlvaqflaes
interface signature	MRKK/MRKK/MRKK/MRKK/MRK

Estimated binding specificities ?

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# IC=18.241 IC/col=0.869 n_of_columns=21

specificity:

A |   1   0  24   0   0  24   0   1   0   1  13   2   0  24   9   1   3  24   0   1   1
C |   0   0  24  96   0  24   1  90   0  82   9  92   0  24  13   1   1  24   0  94   1
G |  71   0  24   0  96  24   0   1  96   9   9   1  96  24  13  83  92  24   0   0  93
T |  24  96  24   0   0  24  95   4   0   4  65   1   0  24  61  11   0  24  96   1   1

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updated Wed Jun 24 11:31:35 2026