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structure nameTHE BINDING DOMAIN OF SKN-1 IN COMPLEX WITH DNA: A NEW DNA-BINDING MOTIF
(DNA-BINDING DOMAIN OF SKN-1)
referenceDaughdrill et al. Nat.Struct.Biol. 5 484 1998
sourceCaenorhabditis elegans
experimentX-ray (resolution=2.50, R-factor=0.240)
structural superfamilyA DNA-binding domain in eukaryotic transcription factors;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRNACRR

Estimated binding specificities ?

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# IC=2.312 IC/col=0.463 n_of_columns=5 specificity:   
A |  10   8  36   3  60
C |   9   8  19  86  12
G |   9  72  22   4  20
T |  68   8  19   3   4
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: SKN-1
CGTCAPubMed1skn_P(1.49e-04)
GTCATPubMed1skn_P(1.49e-04)

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updated Sun Aug 3 05:55:52 2025