| structure name | TAQ POLYMERASE (E.C.2.7.7.7)/DNA/B-OCTYLGLUCOSIDE COMPLEX (PROTEIN TAQ POLYMERASE) |
| reference | Steitz et al. |
| source | Thermus aquaticus |
| experiment | X-ray (resolution=3.00, R-factor=?) |
| structural superfamily | DNA/RNA polymerases;PIN domain-like;5' to 3' exonuclease, C-terminal subdomain;Ribonuclease H-like; |
| sequence family | DNA polymerase family A; Taq polymerase, exonuclease; 5'3' exonuclease, Nterminal resolvase; 5'3' exonuclease, Cterminal SAM fold; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | NNFYRRNQ |
Estimated binding specificities ?
| contact |  |
A | 9 12 19 0 C | 9 60 19 96 G | 9 12 39 0 T | 69 12 19 0scan! |
Dendrogram of similar interfaces ?
matrix format----------------------------------NANC------FC--YG------RG--------------RGNGQC-- L +------------1tau_A ! --------------VAAAKC------------RTNGNC----TC----YCMCSAHARAQAEA------------NGQG-- ! +-6fbc_A ! +-3 ------------------RC------------RANGNGRT----YG--YT--SCYC------------------NTQT-- L ! ! +-6vdd_A +-7 +-4 ------------------KT----YG------RGNGNGRC----YG--YAIGSCYC----NGRC--FG--------QAHG ! ! ! ! +-4yfu_D ! ! ! +-2 LCNGKGYGMGRCEG------------SGHGVC------------------------------------------------ ! ! +-5 +-1kln_A ! ! ! ! --------------------KA--------------NT--------------------------------------QGHT L +------------8 ! ! ! +-6xbu_A ! ! +------6 +--1 ------------------NA--KG--------RC--NT----QC--------------------NG--YGATRT--QGHC L ! ! ! +-4x0p_B ! ! ! ------------------KT------------RG------EGKGYGACYCAC----RC----------QTATRTNGQGHC L +-9 ! +-----4xvk_A ! ! ! ----------------------KT--------RTNG------------YA--------------------------QA-- ! ! +--------------1x9m_A -10 ! ----------------------NG--------RTTT------IGYG--YG------------------------NGQT-- ! +---------------------------4ztu_A ! ----------------------------------------------TGYGVG--YT------------------------ L +----------------------------4boc_A |
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updated Fri Sep 13 16:00:54 2024