1tgh_A : 3D-footprint complex

structure name	TATA BINDING PROTEIN (TBP)/DNA COMPLEX (PROTEIN TATA BINDING PROTEIN TBP)
reference	Dickerson et al.
source	HOMO SAPIENS
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	TATA-box binding protein-like;
sequence family	Transcription factor TFIID or TATAbinding;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1tgh_A interface=9,11,39,54,56,62,64,99,101,130,131,145,147,153,155, sgivpqlqNiVstvnlgckldlktialrarnaeynpkrFaavimrireprttaLiFssgkmVcTgakseeqsrlaarkyarvvqklgfpakfldfkiqNmVgscdvkfpirleglvlthqqfssyepelFPgliyrmikprivlLiFvsgkvVlTgakvraeiyeafeniypilkgfrkt
interface signature	NVFLFVTNVFPLFVT

Estimated binding specificities ?

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# IC=8.517 IC/col=0.946 n_of_columns=9

specificity:

A |  22   0  95   6  91   1  78   0  87
C |  18   0   0   3   0  15   6   0   2
G |  39   0   0   3   5   0   8   0   4
T |  17  96   1  84   0  80   4  96   3

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updated Thu Sep 12 15:34:10 2024