1uaa_AB : 3D-footprint complex

structure name	E. COLI REP HELICASE/DNA COMPLEX
reference	Korolev et al. 'Cell(Cambridge,Mass.)' 90 635 1997
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
reference complex	1uaa_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1uaa_A interface=84,109,128,132,133,136,182,249,250,349,355,536,554,576,578,612, rlnpgqqqavefvtgpclvlagagsgktrvitnkiahlirgcgyqarhiaavtftnkaaremkervgqtlgrkearglmistfHtlgldiikreyaalgmkanfslfdDtdqlallkelteglieddKvllQQliStisnwkndlktpsqaaasaigerdrifahcyglydahlkacnvldFddlillptlllqaneevrkrwqnkiryllvdeyqdtntsqyelvkllvgsrarftvvgdddqsiysWRgarpqnlvllsqdfpalkvikleqnyrssgrilkaaniliannphvfekrlfselgygaelkvlsanneeheaervtgeliahhfvnktqykdyailyRgnhqsRvfekflmqnripykisggtsffsrpeikdllaylrvltnpdddsaflrivntpkreigpatlkklgewamtrnksmftasfdmglsqtlsgrgyealtrfthwlaeiqrlaerepiaavrdlihgmdyeswlyetspspkaaemrmknvnqlfswmtemlegseldepmtltqvvtrftlRdmmereeeldqvqlmtlHaskglefpyvymvgmeegflpHqSsidednideerrlayvgitraqkeltftlckerRqygelvrpepsrfllelpqddliw > 1uaa_B interface=84,89,92,93,102,104,106,109,132,182,249,250,349,549,571,573,574, rlnpgqqqavefvtgpclvlagagsgktrvitnkiahlirgcgyqarhiaavtftnkaaremkervgqtlgrkearglmistfHtlglDiiKReyaalgmkAnFsLfdDtdqlallkelteglieddkvllQqlistisnwkndlktpsqaaasaigerdrifahcyglydahlkacnvldFddlillptlllqaneevrkrwqnkiryllvdeyqdtntsqyelvkllvgsrarftvvgdddqsiysWRgarpqnlvllsqdfpalkvikleqnyrssgrilkaaniliannphvfekrlfselgygaelkvlsanneeheaervtgeliahhfvnktqykdyailyRgnhqsrvfekflmqnripykisggtsffsrpeikdllaylrvltnpdddsaflrivntpkreigpatlkklgewamtrnksmftasfdmglsqtlsgrgyealtrfthwlaeiqrlaerepiaavrdlihgmdyeswlyetspspkaaemrmknvnqlfswmtemlegseldepmtltqvvtrftlrdeeldqvqlmtlHaskglefpyvymvgmeegflpHqSSidednideerrlayvgitraqkeltftlckerrqygelvrpepsrfllelpqddliweq
interface signature	HDKQQSFWRRRRHHSR/HDKRAFLDQFWRRHHSS

Estimated binding specificities ?

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# IC=16.990 IC/col=1.062 n_of_columns=16

specificity:

A |   0   0   0   0   0  14   0   0  21   0  24   0   0   0   4   0
C |   0   0   0   0   0  14   0   0  21   0  24   0   0   0   7   0
G |   0   0   0   0   0  14   0   0  23   0  24   0   0   0   4   0
T |  96  96  96  96  96  54  96  96  31  96  24  96  96  96  81  96

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updated Mon Sep 9 14:24:45 2024