1vol_AB : 3D-footprint complex

structure name	TFIIB (HUMAN CORE DOMAIN)/TBP (A.THALIANA)/TATA ELEMENT TERNARY COMPLEX
reference	Nikolov et al. Nature 377 119 1995
source	HOMO SAPIENS / ARABIDOPSIS THALIANA
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	TATA-box binding protein-like;Cyclin-like;Zinc beta-ribbon;
reference complex	1qna_B 5iy6_M
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1vol_A interface= ammnafkeittmadrinlprnkvdrtnnlfrqayeqkslkgrandaiasaclyiacrqegvprtfkeicavsriskkeigrcfklilkaletsvdlittgdfmsrfcsnlclpkqvqmaathiarkaveldlvpgrspisvaaaaiymasqasaekrtqkeigdiagvadvtirqsyrliyprapdlfptdfkfdtpvdklpql > 1vol_B interface=16,18,46,61,63,69,71,106,108,137,138,152,154,160,162, vdlskhpsgivptlqNiVstvnldckldlkaialqarnaeynpkrFaavimrirepkttaLiFasgkmVcTgaksedfskmaarkyarivqklgfpakfkdfkiqNiVgscdvkfpirleglayshaafssyepelFPgliyrmkvpkivlLiFvsgkiViTgakmrdetykafeniypvlsefrki
interface signature	/NVFLFVTNVFPLFVT

Estimated binding specificities ?

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# IC=9.453 IC/col=0.945 n_of_columns=10

specificity:

A |  10  24   0  96   0  96  96  64  96  12
C |  10  24   0   0   0   0   0  10   0  10
G |  66  24   0   0   0   0   0  10   0  74
T |  10  24  96   0  96   0   0  12   0   0

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updated Sun Jan 4 23:51:42 2026