interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF TYPE II RESTRCITION ENDONUCLEASE, ECOO109I COMPLEXED WITH COGNATE DNA
(ECOO109IR)
referenceHashimoto et al. J.Biol.Chem. 280 5605 2005
sourceESCHERICHIA COLI
experimentX-ray (resolution=1.90, R-factor=0.173)
structural superfamilyRestriction endonuclease-like;
multimeric complexes1wte_AB
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureTTKWTQLMDK

Estimated binding specificities ?

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# IC=7.140 IC/col=1.020 n_of_columns=7 specificity:   
A |  13  13   0   0   0   0   0
C |  13  16   0  96  96  96   0
G |  57  54  96   0   0   0   0
T |  13  13   0   0   0   0  96
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: ECOO109I
GGNCCPubMed1wte_AB(1.00e-03)
GGGTCCTPubMed1wte_AB(5.53e-07)

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updated Tue Dec 17 22:29:14 2024