1xbr_AB : 3D-footprint complex

structure name	T DOMAIN FROM XENOPUS LAEVIS BOUND TO DNA
reference	Nature 389 884 1997 Escherichia coli BL21(DE3)
source	XENOPUS LAEVIS
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	p53-like transcription factors;
reference complex	1xbr_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1xbr_A interface=29,156,157,173,177, elkvsleerdlwtrfkeltnemivtkngRrmfpvlkvsmsgldpnamytvlldfvaadnhrwkyvngewvpggkpepqapscvyihpdspnfgahwmkdpvsfskvkltnkmngggqimlnslhkyeprihivrvggtqrmitshsfpetqfiavTAyqneeitalkikhnpFakaFldakern > 1xbr_B interface=29,156,157,173,177, elkvsleerdlwtrfkeltnemivtkngRrmfpvlkvsmsgldpnamytvlldfvaadnhrwkyvngewvpggkpepqapscvyihpdspnfgahwmkdpvsfskvkltnkmngggqimlnslhkyeprihivrvggtqrmitshsfpetqfiavTAyqneeitalkikhnpFakaFldaker
interface signature	RTAFF/RTAFF

Estimated binding specificities ?

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# IC=9.060 IC/col=0.503 n_of_columns=18

specificity:

A |   2  24  24  24   0  86   4  24  24  60  14  11   2   0  24  24  24  93
C |   0  24  24  24  96   0  91  24  24  15   9   9   4   0  24  24  24   0
G |   2  24  24  24   0   7   1  24  24   9  61  62   2  96  24  24  24   2
T |  92  24  24  24   0   3   0  24  24  12  12  14  88   0  24  24  24   1

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updated Mon Sep 9 14:33:05 2024