1xbr_AB : 3D-footprint complex

structure name	T DOMAIN FROM XENOPUS LAEVIS BOUND TO DNA
reference	Nature 389 884 1997 Escherichia coli BL21(DE3)
source	XENOPUS LAEVIS
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	p53-like transcription factors;
reference complex	1xbr_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1xbr_A interface=29,156,157,173,177, elkvsleerdlwtrfkeltnemivtkngRrmfpvlkvsmsgldpnamytvlldfvaadnhrwkyvngewvpggkpepqapscvyihpdspnfgahwmkdpvsfskvkltnkmngggqimlnslhkyeprihivrvggtqrmitshsfpetqfiavTAyqneeitalkikhnpFakaFldakern > 1xbr_B interface=29,156,157,173,177, elkvsleerdlwtrfkeltnemivtkngRrmfpvlkvsmsgldpnamytvlldfvaadnhrwkyvngewvpggkpepqapscvyihpdspnfgahwmkdpvsfskvkltnkmngggqimlnslhkyeprihivrvggtqrmitshsfpetqfiavTAyqneeitalkikhnpFakaFldaker
interface signature	RTAFF/RTAFF

Estimated binding specificities ?

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# IC=9.538 IC/col=0.530 n_of_columns=18

specificity:

A |   3  24  24  24   0  88   0  24  18  24  14   0   0   0  24  24  24  84
C |   5  24  24  24  96   3  89  24   7  24   7   1   3   0  24  24  24   3
G |   0  24  24  24   0   5   0  24  11  24  55  92   1  96  24  24  24   3
T |  88  24  24  24   0   0   7  24  60  24  20   3  92   0  24  24  24   6

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updated Fri Dec 13 11:34:15 2024