1xo0_AB : 3D-footprint complex

structure name	HIGH RESOLUTION STRUCTURE OF THE HOLLIDAY JUNCTION INTERMEDIATE IN CRE-LOXP SITE-SPECIFIC RECOMBINATION
reference	Van Duyne et al. J.Biol.Chem. 280 8290 2005
source	Enterobacteria phage P1
experiment	X-ray (resolution=2.00, R-factor=?)
structural superfamily	DNA breaking-rejoining enzymes;lambda integrase-like, N-terminal domain;
reference complex	7rhx_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1xo0_A interface= sdevrknlmdmfrdrqafsehtwkmllsvcrswaawcklnnrkwfpaepedvrdyllylqarglavktiqqhlgqlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllkiaeiarirvkdisrtdggrmlihigrtktlvstagvekalslgvtklverwisvsgvaddpnnylfcrvrkngvaapsatsqlstralegifeathrliygakddsgqrylawsghsarvgaardmaragvsipeimqaggwtnvnivmnyirnldsetgamvrlled > 1xo0_B interface=21,22,24,25,28,67,68,71,75,182,222,224,225,238,240,243,263, sdevrknlmdmfrdrqafseHTwKMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllkiaeiarirvkdisrtdggrmlihigrtKtlvstagvekalslgvtklverwisvsgvaddpnnylfcRvRKngvaapsatsqlStRalEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtnvnivmnyirnldsetgamvrlled
interface signature	/HTKMSKTQQKRRKSRER

Estimated binding specificities ?

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# IC=10.482 IC/col=0.806 n_of_columns=13

specificity:

A |   0  67  24  24  24  19   0   0   0  96   0  96  19
C |   0  19  24  24  24   9  96   0   0   0   0   0   9
G |   0  10  24  24  24   9   0  96   0   0   0   0  11
T |  96   0  24  24  24  59   0   0  96   0  96   0  57

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updated Mon Jan 5 00:01:14 2026