1y6f_AB : 3D-footprint complex

structure name	ALPHA-GLUCOSYLTRANSFERASE IN COMPLEX WITH UDP-GLUCOSE AND DNA CONTAINING AN ABASIC SITE
reference	Lariviere et al. J.Mol.Biol. 352 139 2005
source	Enterobacteria phage T4
experiment	X-ray (resolution=2.40, R-factor=?)
structural superfamily	UDP-Glycosyltransferase/glycogen phosphorylase;
reference complex	1y8z_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1y6f_A interface=122,126,200,201,230,232,233,234,235,238,267, mgsmricifmarglegcgvtkfsleqrdwfiknghevtlvyakdksftrtsshdhksfsipvilakeydkalklvndcdiliinsvpatsvqeatinnykklldnikpsirvvvyqhdhsvLslrRnlgleetvrradvifshsdngdfnkvlmkewypeeaptvynfqppmdivkvrstywkdvseinmninrwigrtTTwkgfyqmfdfhekflkpagkstvmegleRsPAFIaiKekgipyeyygnreidkmnlapnqpaqilDcyinsemlermsksgfgyqlsklnqkylqrsleythlelgacgtipvfwkstgenlkfrvdntpltshdsgiiwfdendmestferikelssdralydrerekayeflyqhqdssfcfkeqfdiitk > 1y6f_B interface=121,201,232,233,235, gsmricifmarglegcgvtkfsleqrdwfiknghevtlvyakdksftrtsshdhksfsipvilakeydkalklvndcdiliinsvpatsvqeatinnykklldnikpsirvvvyqhdhsvLslrrnlgleetvrradvifshsdngdfnkvlmkewypeteaptvynfqppmdivkvrstywkdvseinmninrwigrttTwkgfyqmfdfhekflkpagkstvmeglersPAfIaikekgipyeyygnreidkmnlapnqpaqildcyinsemlermsksgfgyqlsklnqkylqrsleythlelgacgtipvfwkstgenlkfrvdntpltshdsgiiwfdendmestferikelssdralydrerekayeflyqhqdssfcfkeqfdiitk
interface signature	LRTTRPAFIKD/LTPAI

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# IC=5.778 IC/col=0.722 n_of_columns=8

A |   0  23  53  24  24   0   0  96
C |  96  21  21  24  24   0   0   0
G |   0  10   1  24  24   0  96   0
T |   0  42  21  24  24  96   0   0

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updated Fri Dec 13 11:36:04 2024